##gff-version 3
HG003_chrY	CAT	gene	40449	41804	.	+	.	source_gene_common_name=ENSG00000292329;source_gene=ENSG00000292329.1;alternative_source_transcripts=ENST00000711121.1,ENST00000711121.1;gene_id=HG003_chrY_G0000001;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000292329;gene_sources=liftoff;ID=HG003_chrY_G0000001;Name=ENSG00000292329
HG003_chrY	CAT	transcript	40449	41804	1000	+	.	source_transcript=ENST00000711121.1;source_transcript_name=ENST00000711121;source_gene=ENSG00000292329.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292329.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711121.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711121.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292329;alternative_source_transcripts=ENST00000711121.1,ENST00000711121.1;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_G0000001;transcript_name=HG003_chrY_T0000001;gene_name=ENSG00000292329;ID=HG003_chrY_T0000001;Name=ENSG00000292329
HG003_chrY	CAT	exon	40449	40552	.	+	.	source_transcript=ENST00000711121.1;source_transcript_name=ENST00000711121;source_gene=ENSG00000292329.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292329.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711121.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711121.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292329;alternative_source_transcripts=ENST00000711121.1,ENST00000711121.1;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=HG003_chrY_T0000001;gene_name=ENSG00000292329;ID=exon:HG003_chrY_T0000001:0;Name=ENSG00000292329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	40553	41649	.	+	.	source_transcript=ENST00000711121.1;source_transcript_name=ENST00000711121;source_gene=ENSG00000292329.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292329.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711121.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711121.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292329;alternative_source_transcripts=ENST00000711121.1,ENST00000711121.1;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=HG003_chrY_T0000001;gene_name=ENSG00000292329;ID=intron:HG003_chrY_T0000001:0;Name=ENSG00000292329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	41650	41804	.	+	.	source_transcript=ENST00000711121.1;source_transcript_name=ENST00000711121;source_gene=ENSG00000292329.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292329.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711121.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711121.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292329;alternative_source_transcripts=ENST00000711121.1,ENST00000711121.1;transcript_id=HG003_chrY_T0000001;gene_id=HG003_chrY_G0000001;Parent=HG003_chrY_T0000001;transcript_name=HG003_chrY_T0000001;gene_name=ENSG00000292329;ID=exon:HG003_chrY_T0000001:1;Name=ENSG00000292329;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	54665	69030	.	-	.	source_gene_common_name=ENSG00000310553;source_gene=ENSG00000310553.1;alternative_source_transcripts=ENST00000850732.1,ENST00000850732.1;gene_id=HG003_chrY_G0000002;gene_biotype=lncRNA;gene_name=ENSG00000310553;gene_sources=liftoff;ID=HG003_chrY_G0000002;Name=ENSG00000310553
HG003_chrY	CAT	transcript	54665	69030	1000	-	.	source_transcript=ENST00000850732.1;source_transcript_name=ENST00000850732;source_gene=ENSG00000310553.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310553.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850732.1;transcript_score=299.79200000000003;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310553;alternative_source_transcripts=ENST00000850732.1,ENST00000850732.1;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_G0000002;transcript_name=HG003_chrY_T0000002;gene_name=ENSG00000310553;ID=HG003_chrY_T0000002;Name=ENSG00000310553
HG003_chrY	CAT	exon	54665	54856	.	-	.	source_transcript=ENST00000850732.1;source_transcript_name=ENST00000850732;source_gene=ENSG00000310553.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310553.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850732.1;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310553;alternative_source_transcripts=ENST00000850732.1,ENST00000850732.1;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=HG003_chrY_T0000002;gene_name=ENSG00000310553;ID=exon:HG003_chrY_T0000002:0;Name=ENSG00000310553;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	54857	68502	.	-	.	source_transcript=ENST00000850732.1;source_transcript_name=ENST00000850732;source_gene=ENSG00000310553.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310553.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850732.1;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310553;alternative_source_transcripts=ENST00000850732.1,ENST00000850732.1;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=HG003_chrY_T0000002;gene_name=ENSG00000310553;ID=intron:HG003_chrY_T0000002:0;Name=ENSG00000310553;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	68503	68641	.	-	.	source_transcript=ENST00000850732.1;source_transcript_name=ENST00000850732;source_gene=ENSG00000310553.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310553.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850732.1;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310553;alternative_source_transcripts=ENST00000850732.1,ENST00000850732.1;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=HG003_chrY_T0000002;gene_name=ENSG00000310553;ID=exon:HG003_chrY_T0000002:1;Name=ENSG00000310553;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	68642	68881	.	-	.	source_transcript=ENST00000850732.1;source_transcript_name=ENST00000850732;source_gene=ENSG00000310553.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310553.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850732.1;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310553;alternative_source_transcripts=ENST00000850732.1,ENST00000850732.1;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=HG003_chrY_T0000002;gene_name=ENSG00000310553;ID=intron:HG003_chrY_T0000002:1;Name=ENSG00000310553;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	68882	69030	.	-	.	source_transcript=ENST00000850732.1;source_transcript_name=ENST00000850732;source_gene=ENSG00000310553.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310553.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850732.1;transcript_score=299.79200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310553;alternative_source_transcripts=ENST00000850732.1,ENST00000850732.1;transcript_id=HG003_chrY_T0000002;gene_id=HG003_chrY_G0000002;Parent=HG003_chrY_T0000002;transcript_name=HG003_chrY_T0000002;gene_name=ENSG00000310553;ID=exon:HG003_chrY_T0000002:2;Name=ENSG00000310553;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	69142	96217	.	+	.	source_gene_common_name=PLCXD1;source_gene=ENSG00000292344.1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;gene_id=HG003_chrY_G0000003;gene_biotype=protein_coding;gene_name=PLCXD1;gene_sources=liftoff;ID=HG003_chrY_G0000003;Name=PLCXD1
HG003_chrY	CAT	transcript	69142	96214	100	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=HG003_chrY_T0000003;Name=PLCXD1
HG003_chrY	CAT	exon	69142	69214	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000003:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	69215	74361	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000003:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	74362	74564	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000003:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	74565	77045	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000003:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	77046	77193	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000003:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	77067	77193	.	+	0	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000003:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	77067	77069	.	+	0	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=start_codon:HG003_chrY_T0000003;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	77194	81603	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000003:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	81604	81740	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000003:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	81604	81740	.	+	2	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000003:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	81741	83518	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000003:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	83519	83647	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000003:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	83519	83647	.	+	0	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000003:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	83648	84369	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000003:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	84370	84525	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000003:5;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	84370	84525	.	+	0	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000003:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	84526	85905	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000003:5;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	85906	86089	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000003:6;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	85906	86089	.	+	0	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000003:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	86090	91967	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000003:6;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	91968	96214	.	+	.	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000003:7;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	91968	92206	.	+	2	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000003:5;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	92204	92206	.	+	0	source_transcript=ENST00000711184.1;source_transcript_name=PLCXD1-220;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711184.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711184.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711184.1,ENST00000711184.1;transcript_id=HG003_chrY_T0000003;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000003;transcript_name=HG003_chrY_T0000003;gene_name=PLCXD1;ID=stop_codon:HG003_chrY_T0000003;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	69144	84408	1000	+	.	source_transcript=ENST00000711183.1;source_transcript_name=PLCXD1-219;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711183.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711183.1,ENST00000711183.1;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=HG003_chrY_T0000004;gene_name=PLCXD1;ID=HG003_chrY_T0000004;Name=PLCXD1
HG003_chrY	CAT	exon	69144	69214	.	+	.	source_transcript=ENST00000711183.1;source_transcript_name=PLCXD1-219;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711183.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711183.1,ENST00000711183.1;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=HG003_chrY_T0000004;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000004:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	69215	77045	.	+	.	source_transcript=ENST00000711183.1;source_transcript_name=PLCXD1-219;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711183.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711183.1,ENST00000711183.1;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=HG003_chrY_T0000004;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000004:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	77046	77193	.	+	.	source_transcript=ENST00000711183.1;source_transcript_name=PLCXD1-219;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711183.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711183.1,ENST00000711183.1;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=HG003_chrY_T0000004;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000004:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	77194	81603	.	+	.	source_transcript=ENST00000711183.1;source_transcript_name=PLCXD1-219;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711183.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711183.1,ENST00000711183.1;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=HG003_chrY_T0000004;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000004:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	81604	81740	.	+	.	source_transcript=ENST00000711183.1;source_transcript_name=PLCXD1-219;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711183.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711183.1,ENST00000711183.1;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=HG003_chrY_T0000004;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000004:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	81741	83518	.	+	.	source_transcript=ENST00000711183.1;source_transcript_name=PLCXD1-219;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711183.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711183.1,ENST00000711183.1;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=HG003_chrY_T0000004;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000004:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	83519	83663	.	+	.	source_transcript=ENST00000711183.1;source_transcript_name=PLCXD1-219;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711183.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711183.1,ENST00000711183.1;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=HG003_chrY_T0000004;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000004:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	83664	84369	.	+	.	source_transcript=ENST00000711183.1;source_transcript_name=PLCXD1-219;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711183.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711183.1,ENST00000711183.1;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=HG003_chrY_T0000004;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000004:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	84370	84408	.	+	.	source_transcript=ENST00000711183.1;source_transcript_name=PLCXD1-219;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711183.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711183.1,ENST00000711183.1;transcript_id=HG003_chrY_T0000004;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000004;transcript_name=HG003_chrY_T0000004;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000004:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	69173	84500	100	+	.	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=HG003_chrY_T0000005;Name=PLCXD1
HG003_chrY	CAT	exon	69173	69214	.	+	.	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000005:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	69215	77045	.	+	.	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000005:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	77046	77193	.	+	.	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000005:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	77067	77193	.	+	0	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000005:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	77067	77069	.	+	0	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=start_codon:HG003_chrY_T0000005;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	77194	81603	.	+	.	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000005:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	81604	81740	.	+	.	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000005:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	81604	81740	.	+	2	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000005:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	81741	83518	.	+	.	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000005:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	83519	83647	.	+	.	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000005:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	83519	83647	.	+	0	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000005:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	83648	84369	.	+	.	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000005:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	84370	84500	.	+	.	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000005:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	84370	84500	.	+	0	source_transcript=ENST00000711182.1;source_transcript_name=PLCXD1-218;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711182.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711182.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711182.1,ENST00000711182.1;transcript_id=HG003_chrY_T0000005;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000005;transcript_name=HG003_chrY_T0000005;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000005:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	73935	81740	100	+	.	source_transcript=ENST00000711181.1;source_transcript_name=PLCXD1-217;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711181.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711181.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711181.1,ENST00000711181.1;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=HG003_chrY_T0000007;gene_name=PLCXD1;ID=HG003_chrY_T0000007;Name=PLCXD1
HG003_chrY	CAT	exon	73935	74001	.	+	.	source_transcript=ENST00000711181.1;source_transcript_name=PLCXD1-217;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711181.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711181.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711181.1,ENST00000711181.1;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=HG003_chrY_T0000007;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000007:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	74002	74361	.	+	.	source_transcript=ENST00000711181.1;source_transcript_name=PLCXD1-217;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711181.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711181.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711181.1,ENST00000711181.1;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=HG003_chrY_T0000007;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000007:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	74362	74564	.	+	.	source_transcript=ENST00000711181.1;source_transcript_name=PLCXD1-217;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711181.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711181.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711181.1,ENST00000711181.1;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=HG003_chrY_T0000007;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000007:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	74565	77045	.	+	.	source_transcript=ENST00000711181.1;source_transcript_name=PLCXD1-217;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711181.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711181.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711181.1,ENST00000711181.1;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=HG003_chrY_T0000007;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000007:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	77046	77193	.	+	.	source_transcript=ENST00000711181.1;source_transcript_name=PLCXD1-217;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711181.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711181.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711181.1,ENST00000711181.1;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=HG003_chrY_T0000007;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000007:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	77067	77193	.	+	0	source_transcript=ENST00000711181.1;source_transcript_name=PLCXD1-217;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711181.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711181.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711181.1,ENST00000711181.1;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=HG003_chrY_T0000007;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000007:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	77067	77069	.	+	0	source_transcript=ENST00000711181.1;source_transcript_name=PLCXD1-217;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711181.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711181.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711181.1,ENST00000711181.1;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=HG003_chrY_T0000007;gene_name=PLCXD1;ID=start_codon:HG003_chrY_T0000007;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	77194	81603	.	+	.	source_transcript=ENST00000711181.1;source_transcript_name=PLCXD1-217;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711181.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711181.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711181.1,ENST00000711181.1;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=HG003_chrY_T0000007;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000007:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	81604	81740	.	+	.	source_transcript=ENST00000711181.1;source_transcript_name=PLCXD1-217;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711181.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711181.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711181.1,ENST00000711181.1;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=HG003_chrY_T0000007;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000007:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	81604	81740	.	+	2	source_transcript=ENST00000711181.1;source_transcript_name=PLCXD1-217;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711181.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711181.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711181.1,ENST00000711181.1;transcript_id=HG003_chrY_T0000007;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000007;transcript_name=HG003_chrY_T0000007;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000007:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	74074	81658	100	+	.	source_transcript=ENST00000711180.1;source_transcript_name=PLCXD1-216;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711180.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711180.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711180.1,ENST00000711180.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=HG003_chrY_T0000008;gene_name=PLCXD1;ID=HG003_chrY_T0000008;Name=PLCXD1
HG003_chrY	CAT	exon	74074	74136	.	+	.	source_transcript=ENST00000711180.1;source_transcript_name=PLCXD1-216;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711180.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711180.1,ENST00000711180.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000008;transcript_name=HG003_chrY_T0000008;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000008:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	74137	74361	.	+	.	source_transcript=ENST00000711180.1;source_transcript_name=PLCXD1-216;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711180.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711180.1,ENST00000711180.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000008;transcript_name=HG003_chrY_T0000008;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000008:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	74362	74564	.	+	.	source_transcript=ENST00000711180.1;source_transcript_name=PLCXD1-216;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711180.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711180.1,ENST00000711180.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000008;transcript_name=HG003_chrY_T0000008;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000008:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	74565	77045	.	+	.	source_transcript=ENST00000711180.1;source_transcript_name=PLCXD1-216;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711180.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711180.1,ENST00000711180.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000008;transcript_name=HG003_chrY_T0000008;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000008:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	77046	77193	.	+	.	source_transcript=ENST00000711180.1;source_transcript_name=PLCXD1-216;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711180.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711180.1,ENST00000711180.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000008;transcript_name=HG003_chrY_T0000008;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000008:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	77067	77193	.	+	0	source_transcript=ENST00000711180.1;source_transcript_name=PLCXD1-216;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711180.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711180.1,ENST00000711180.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000008;transcript_name=HG003_chrY_T0000008;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000008:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	77067	77069	.	+	0	source_transcript=ENST00000711180.1;source_transcript_name=PLCXD1-216;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711180.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711180.1,ENST00000711180.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000008;transcript_name=HG003_chrY_T0000008;gene_name=PLCXD1;ID=start_codon:HG003_chrY_T0000008;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	77194	81603	.	+	.	source_transcript=ENST00000711180.1;source_transcript_name=PLCXD1-216;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711180.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711180.1,ENST00000711180.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000008;transcript_name=HG003_chrY_T0000008;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000008:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	81604	81658	.	+	.	source_transcript=ENST00000711180.1;source_transcript_name=PLCXD1-216;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711180.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711180.1,ENST00000711180.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000008;transcript_name=HG003_chrY_T0000008;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000008:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	81604	81658	.	+	2	source_transcript=ENST00000711180.1;source_transcript_name=PLCXD1-216;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711180.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711180.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711180.1,ENST00000711180.1;transcript_id=HG003_chrY_T0000008;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000008;transcript_name=HG003_chrY_T0000008;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000008:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	74261	96217	100	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=HG003_chrY_T0000009;Name=PLCXD1
HG003_chrY	CAT	exon	74261	74564	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000009:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	74565	77045	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000009:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	77046	77193	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000009:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	77067	77193	.	+	0	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000009:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	77067	77069	.	+	0	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=start_codon:HG003_chrY_T0000009;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	77194	81603	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000009:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	81604	81740	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000009:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	81604	81740	.	+	2	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000009:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	81741	83518	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000009:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	83519	83647	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000009:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	83519	83647	.	+	0	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000009:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	83648	84369	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000009:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	84370	84525	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000009:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	84370	84525	.	+	0	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000009:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	84526	85905	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000009:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	85906	86089	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000009:5;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	85906	86089	.	+	0	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000009:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	86090	91967	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000009:5;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	91968	96217	.	+	.	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000009:6;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	91968	92206	.	+	2	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000009:5;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	92204	92206	.	+	0	source_transcript=ENST00000711179.1;source_transcript_name=PLCXD1-215;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711179.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711179.1,ENST00000711179.1;transcript_id=HG003_chrY_T0000009;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000009;transcript_name=HG003_chrY_T0000009;gene_name=PLCXD1;ID=stop_codon:HG003_chrY_T0000009;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	76042	81700	100	+	.	source_transcript=ENST00000711177.1;source_transcript_name=PLCXD1-214;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711177.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711177.1,ENST00000711177.1;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=HG003_chrY_T0000010;gene_name=PLCXD1;ID=HG003_chrY_T0000010;Name=PLCXD1
HG003_chrY	CAT	exon	76042	76080	.	+	.	source_transcript=ENST00000711177.1;source_transcript_name=PLCXD1-214;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711177.1,ENST00000711177.1;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000010;transcript_name=HG003_chrY_T0000010;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000010:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	76081	77045	.	+	.	source_transcript=ENST00000711177.1;source_transcript_name=PLCXD1-214;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711177.1,ENST00000711177.1;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000010;transcript_name=HG003_chrY_T0000010;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000010:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	77046	77193	.	+	.	source_transcript=ENST00000711177.1;source_transcript_name=PLCXD1-214;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711177.1,ENST00000711177.1;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000010;transcript_name=HG003_chrY_T0000010;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000010:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	77067	77193	.	+	0	source_transcript=ENST00000711177.1;source_transcript_name=PLCXD1-214;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711177.1,ENST00000711177.1;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000010;transcript_name=HG003_chrY_T0000010;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000010:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	77067	77069	.	+	0	source_transcript=ENST00000711177.1;source_transcript_name=PLCXD1-214;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711177.1,ENST00000711177.1;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000010;transcript_name=HG003_chrY_T0000010;gene_name=PLCXD1;ID=start_codon:HG003_chrY_T0000010;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	77194	81603	.	+	.	source_transcript=ENST00000711177.1;source_transcript_name=PLCXD1-214;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711177.1,ENST00000711177.1;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000010;transcript_name=HG003_chrY_T0000010;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000010:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	81604	81700	.	+	.	source_transcript=ENST00000711177.1;source_transcript_name=PLCXD1-214;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711177.1,ENST00000711177.1;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000010;transcript_name=HG003_chrY_T0000010;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000010:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	81604	81700	.	+	2	source_transcript=ENST00000711177.1;source_transcript_name=PLCXD1-214;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711177.1,ENST00000711177.1;transcript_id=HG003_chrY_T0000010;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000010;transcript_name=HG003_chrY_T0000010;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000010:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	76344	84510	100	+	.	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=HG003_chrY_T0000011;Name=PLCXD1
HG003_chrY	CAT	exon	76344	76367	.	+	.	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000011:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	76368	77045	.	+	.	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000011:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	77046	77193	.	+	.	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000011:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	77067	77193	.	+	0	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000011:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	77067	77069	.	+	0	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=start_codon:HG003_chrY_T0000011;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	77194	81603	.	+	.	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000011:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	81604	81740	.	+	.	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000011:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	81604	81740	.	+	2	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000011:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	81741	83518	.	+	.	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000011:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	83519	83647	.	+	.	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000011:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	83519	83647	.	+	0	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000011:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	83648	84369	.	+	.	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000011:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	84370	84510	.	+	.	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000011:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	84370	84510	.	+	0	source_transcript=ENST00000711176.1;source_transcript_name=PLCXD1-213;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711176.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711176.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711176.1,ENST00000711176.1;transcript_id=HG003_chrY_T0000011;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000011;transcript_name=HG003_chrY_T0000011;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000011:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	76358	84500	100	+	.	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=HG003_chrY_T0000012;Name=PLCXD1
HG003_chrY	CAT	exon	76358	76399	.	+	.	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000012:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	76400	77045	.	+	.	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000012:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	77046	77193	.	+	.	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000012:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	77067	77193	.	+	0	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000012:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	77067	77069	.	+	0	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=start_codon:HG003_chrY_T0000012;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	77194	81603	.	+	.	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000012:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	81604	81740	.	+	.	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000012:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	81604	81740	.	+	2	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000012:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	81741	83518	.	+	.	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000012:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	83519	83647	.	+	.	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000012:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	83519	83647	.	+	0	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000012:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	83648	84369	.	+	.	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000012:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	84370	84500	.	+	.	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000012:4;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	84370	84500	.	+	0	source_transcript=ENST00000711175.1;source_transcript_name=PLCXD1-212;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711175.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711175.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711175.1,ENST00000711175.1;transcript_id=HG003_chrY_T0000012;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000012;transcript_name=HG003_chrY_T0000012;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000012:3;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	76613	83628	100	+	.	source_transcript=ENST00000711174.1;source_transcript_name=PLCXD1-211;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711174.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711174.1,ENST00000711174.1;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_G0000003;transcript_name=HG003_chrY_T0000013;gene_name=PLCXD1;ID=HG003_chrY_T0000013;Name=PLCXD1
HG003_chrY	CAT	exon	76613	77193	.	+	.	source_transcript=ENST00000711174.1;source_transcript_name=PLCXD1-211;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711174.1,ENST00000711174.1;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000013;transcript_name=HG003_chrY_T0000013;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000013:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	77067	77193	.	+	0	source_transcript=ENST00000711174.1;source_transcript_name=PLCXD1-211;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711174.1,ENST00000711174.1;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000013;transcript_name=HG003_chrY_T0000013;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000013:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	77067	77069	.	+	0	source_transcript=ENST00000711174.1;source_transcript_name=PLCXD1-211;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711174.1,ENST00000711174.1;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000013;transcript_name=HG003_chrY_T0000013;gene_name=PLCXD1;ID=start_codon:HG003_chrY_T0000013;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	77194	81603	.	+	.	source_transcript=ENST00000711174.1;source_transcript_name=PLCXD1-211;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711174.1,ENST00000711174.1;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000013;transcript_name=HG003_chrY_T0000013;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000013:0;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	81604	81740	.	+	.	source_transcript=ENST00000711174.1;source_transcript_name=PLCXD1-211;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711174.1,ENST00000711174.1;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000013;transcript_name=HG003_chrY_T0000013;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000013:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	81604	81740	.	+	2	source_transcript=ENST00000711174.1;source_transcript_name=PLCXD1-211;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711174.1,ENST00000711174.1;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000013;transcript_name=HG003_chrY_T0000013;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000013:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	81741	83518	.	+	.	source_transcript=ENST00000711174.1;source_transcript_name=PLCXD1-211;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711174.1,ENST00000711174.1;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000013;transcript_name=HG003_chrY_T0000013;gene_name=PLCXD1;ID=intron:HG003_chrY_T0000013:1;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	83519	83628	.	+	.	source_transcript=ENST00000711174.1;source_transcript_name=PLCXD1-211;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711174.1,ENST00000711174.1;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000013;transcript_name=HG003_chrY_T0000013;gene_name=PLCXD1;ID=exon:HG003_chrY_T0000013:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	83519	83628	.	+	0	source_transcript=ENST00000711174.1;source_transcript_name=PLCXD1-211;source_gene=ENSG00000292344.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292344.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711174.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PLCXD1;alternative_source_transcripts=ENST00000711174.1,ENST00000711174.1;transcript_id=HG003_chrY_T0000013;gene_id=HG003_chrY_G0000003;Parent=HG003_chrY_T0000013;transcript_name=HG003_chrY_T0000013;gene_name=PLCXD1;ID=CDS:HG003_chrY_T0000013:2;Name=PLCXD1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	71766	74705	.	-	.	source_gene_common_name=ENSG00000310554;source_gene=ENSG00000310554.1;alternative_source_transcripts=ENST00000850733.1,ENST00000850733.1;gene_id=HG003_chrY_G0000004;gene_biotype=lncRNA;gene_name=ENSG00000310554;gene_sources=liftoff;ID=HG003_chrY_G0000004;Name=ENSG00000310554
HG003_chrY	CAT	transcript	71766	74705	1000	-	.	source_transcript=ENST00000850733.1;source_transcript_name=ENST00000850733;source_gene=ENSG00000310554.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310554.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850733.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310554;alternative_source_transcripts=ENST00000850733.1,ENST00000850733.1;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000004;Parent=HG003_chrY_G0000004;transcript_name=HG003_chrY_T0000006;gene_name=ENSG00000310554;ID=HG003_chrY_T0000006;Name=ENSG00000310554
HG003_chrY	CAT	exon	71766	72592	.	-	.	source_transcript=ENST00000850733.1;source_transcript_name=ENST00000850733;source_gene=ENSG00000310554.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310554.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850733.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310554;alternative_source_transcripts=ENST00000850733.1,ENST00000850733.1;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000004;Parent=HG003_chrY_T0000006;transcript_name=HG003_chrY_T0000006;gene_name=ENSG00000310554;ID=exon:HG003_chrY_T0000006:0;Name=ENSG00000310554;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	72593	74365	.	-	.	source_transcript=ENST00000850733.1;source_transcript_name=ENST00000850733;source_gene=ENSG00000310554.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310554.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850733.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310554;alternative_source_transcripts=ENST00000850733.1,ENST00000850733.1;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000004;Parent=HG003_chrY_T0000006;transcript_name=HG003_chrY_T0000006;gene_name=ENSG00000310554;ID=intron:HG003_chrY_T0000006:0;Name=ENSG00000310554;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	74366	74705	.	-	.	source_transcript=ENST00000850733.1;source_transcript_name=ENST00000850733;source_gene=ENSG00000310554.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310554.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850733.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310554;alternative_source_transcripts=ENST00000850733.1,ENST00000850733.1;transcript_id=HG003_chrY_T0000006;gene_id=HG003_chrY_G0000004;Parent=HG003_chrY_T0000006;transcript_name=HG003_chrY_T0000006;gene_name=ENSG00000310554;ID=exon:HG003_chrY_T0000006:1;Name=ENSG00000310554;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	96207	115467	.	-	.	source_gene_common_name=GTPBP6;source_gene=ENSG00000292358.2;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;gene_id=HG003_chrY_G0000005;gene_biotype=protein_coding;gene_name=GTPBP6;gene_sources=liftoff,transMap,transMap_pairwise;ID=HG003_chrY_G0000005;Name=GTPBP6
HG003_chrY	CAT	transcript	96207	115467	100	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_G0000005;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=HG003_chrY_T0000014;Name=GTPBP6
HG003_chrY	CAT	exon	96207	98059	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000014:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	97936	98059	.	-	1	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000014:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	97936	97938	.	-	0	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=stop_codon:HG003_chrY_T0000014;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	98060	100169	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000014:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100170	100322	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000014:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100170	100322	.	-	1	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000014:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100323	100541	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000014:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100542	100690	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000014:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100542	100690	.	-	0	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000014:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100691	105348	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000014:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	105349	105557	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000014:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	105349	105557	.	-	2	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000014:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	105558	106795	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000014:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	106796	106954	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000014:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	106796	106954	.	-	2	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000014:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	106955	108179	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000014:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108180	108247	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000014:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108180	108247	.	-	1	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000014:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	108248	108919	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000014:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108920	109050	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000014:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108920	109050	.	-	0	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000014:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109051	109255	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000014:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	109256	109326	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000014:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	109256	109326	.	-	2	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000014:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109327	113592	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000014:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	113593	113730	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000014:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	113593	113730	.	-	2	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000014:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	113731	115107	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000014:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	115108	115467	.	-	.	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000014:9;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	115108	115456	.	-	0	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000014:9;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	115454	115456	.	-	0	source_transcript=ENST00000850822.1;source_transcript_name=GTPBP6-206;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850822.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000850822.1,ENST00000850822.1;transcript_id=HG003_chrY_T0000014;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000014;transcript_name=HG003_chrY_T0000014;gene_name=GTPBP6;ID=start_codon:HG003_chrY_T0000014;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	97391	106487	1000	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_G0000005;transcript_name=HG003_chrY_T0000015;gene_name=GTPBP6;ID=HG003_chrY_T0000015;Name=GTPBP6
HG003_chrY	CAT	exon	97391	98059	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000015;transcript_name=HG003_chrY_T0000015;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000015:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	98060	100169	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000015;transcript_name=HG003_chrY_T0000015;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000015:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100170	100322	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000015;transcript_name=HG003_chrY_T0000015;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000015:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100323	100541	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000015;transcript_name=HG003_chrY_T0000015;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000015:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100542	100690	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000015;transcript_name=HG003_chrY_T0000015;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000015:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100691	105348	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000015;transcript_name=HG003_chrY_T0000015;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000015:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	105349	106069	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000015;transcript_name=HG003_chrY_T0000015;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000015:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	106070	106166	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000015;transcript_name=HG003_chrY_T0000015;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000015:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	106167	106487	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000015;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000015;transcript_name=HG003_chrY_T0000015;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000015:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	97391	106487	1000	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_G0000005;transcript_name=HG003_chrY_T0000016;gene_name=GTPBP6;ID=HG003_chrY_T0000016;Name=GTPBP6
HG003_chrY	CAT	exon	97391	98059	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000016;transcript_name=HG003_chrY_T0000016;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000016:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	98060	100169	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000016;transcript_name=HG003_chrY_T0000016;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000016:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100170	100322	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000016;transcript_name=HG003_chrY_T0000016;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000016:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100323	100541	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000016;transcript_name=HG003_chrY_T0000016;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000016:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100542	100690	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000016;transcript_name=HG003_chrY_T0000016;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000016:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100691	105348	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000016;transcript_name=HG003_chrY_T0000016;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000016:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	105349	106061	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000016;transcript_name=HG003_chrY_T0000016;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000016:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	106062	106158	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000016;transcript_name=HG003_chrY_T0000016;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000016:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	106159	106487	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000016;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000016;transcript_name=HG003_chrY_T0000016;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000016:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	97391	106487	1000	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_G0000005;transcript_name=HG003_chrY_T0000017;gene_name=GTPBP6;ID=HG003_chrY_T0000017;Name=GTPBP6
HG003_chrY	CAT	exon	97391	98059	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000017;transcript_name=HG003_chrY_T0000017;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000017:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	98060	100169	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000017;transcript_name=HG003_chrY_T0000017;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000017:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100170	100322	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000017;transcript_name=HG003_chrY_T0000017;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000017:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100323	100541	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000017;transcript_name=HG003_chrY_T0000017;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000017:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100542	100690	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000017;transcript_name=HG003_chrY_T0000017;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000017:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100691	105348	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000017;transcript_name=HG003_chrY_T0000017;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000017:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	105349	106487	.	-	.	source_transcript=ENST00000711232.1;source_transcript_name=GTPBP6-204;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711232.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711232.1;transcript_score=274.256;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;transcript_id=HG003_chrY_T0000017;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000017;transcript_name=HG003_chrY_T0000017;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000017:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	97621	115465	100	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_G0000005;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=HG003_chrY_T0000018;Name=GTPBP6
HG003_chrY	CAT	exon	97621	98059	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000018:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	97936	98059	.	-	1	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000018:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	97936	97938	.	-	0	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=stop_codon:HG003_chrY_T0000018;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	98060	100169	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000018:0;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100170	100322	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000018:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100170	100322	.	-	1	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000018:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100323	100541	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000018:1;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	100542	100690	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000018:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	100542	100690	.	-	0	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000018:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	100691	105348	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000018:2;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	105349	105557	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000018:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	105349	105557	.	-	2	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000018:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	105558	106795	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000018:3;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	106796	106954	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000018:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	106796	106954	.	-	2	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000018:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	106955	108179	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000018:4;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108180	108247	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000018:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108180	108247	.	-	1	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000018:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	108248	108919	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000018:5;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	108920	109050	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000018:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	108920	109050	.	-	0	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000018:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109051	109255	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000018:6;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	109256	109326	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000018:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	109256	109326	.	-	2	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000018:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	109327	113592	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000018:7;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	113593	113730	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000018:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	113593	113730	.	-	2	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000018:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	113731	115107	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=intron:HG003_chrY_T0000018:8;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	115108	115465	.	-	.	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=exon:HG003_chrY_T0000018:9;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	115108	115456	.	-	0	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=CDS:HG003_chrY_T0000018:9;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	115454	115456	.	-	0	source_transcript=ENST00000711233.1;source_transcript_name=GTPBP6-205;source_gene=ENSG00000292358.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292358.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711233.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711233.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GTPBP6;alternative_source_transcripts=ENST00000711233.1,ENST00000711233.1;transcript_id=HG003_chrY_T0000018;gene_id=HG003_chrY_G0000005;Parent=HG003_chrY_T0000018;transcript_name=HG003_chrY_T0000018;gene_name=GTPBP6;ID=start_codon:HG003_chrY_T0000018;Name=GTPBP6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	117659	118520	.	+	.	source_gene_common_name=LINC00685;source_gene=ENSG00000292342.1;alternative_source_transcripts=ENST00000711187.1,ENST00000711187.1;gene_id=HG003_chrY_G0000006;gene_biotype=lncRNA;gene_name=LINC00685;gene_sources=liftoff;ID=HG003_chrY_G0000006;Name=LINC00685
HG003_chrY	CAT	transcript	117659	118520	1000	+	.	source_transcript=ENST00000711187.1;source_transcript_name=LINC00685-203;source_gene=ENSG00000292342.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292342.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711187.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=ENST00000711187.1,ENST00000711187.1;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_G0000006;transcript_name=HG003_chrY_T0000019;gene_name=LINC00685;ID=HG003_chrY_T0000019;Name=LINC00685
HG003_chrY	CAT	exon	117659	117917	.	+	.	source_transcript=ENST00000711187.1;source_transcript_name=LINC00685-203;source_gene=ENSG00000292342.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292342.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711187.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=ENST00000711187.1,ENST00000711187.1;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000019;transcript_name=HG003_chrY_T0000019;gene_name=LINC00685;ID=exon:HG003_chrY_T0000019:0;Name=LINC00685;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	117918	118351	.	+	.	source_transcript=ENST00000711187.1;source_transcript_name=LINC00685-203;source_gene=ENSG00000292342.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292342.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711187.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=ENST00000711187.1,ENST00000711187.1;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000019;transcript_name=HG003_chrY_T0000019;gene_name=LINC00685;ID=intron:HG003_chrY_T0000019:0;Name=LINC00685;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	118352	118520	.	+	.	source_transcript=ENST00000711187.1;source_transcript_name=LINC00685-203;source_gene=ENSG00000292342.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292342.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711187.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00685;alternative_source_transcripts=ENST00000711187.1,ENST00000711187.1;transcript_id=HG003_chrY_T0000019;gene_id=HG003_chrY_G0000006;Parent=HG003_chrY_T0000019;transcript_name=HG003_chrY_T0000019;gene_name=LINC00685;ID=exon:HG003_chrY_T0000019:1;Name=LINC00685;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	130621	184765	.	-	.	source_gene_common_name=PPP2R3B;source_gene=ENSG00000292327.1;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;gene_id=HG003_chrY_G0000007;gene_biotype=protein_coding;gene_name=PPP2R3B;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000007;Name=PPP2R3B
HG003_chrY	CAT	transcript	130621	184717	100	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=HG003_chrY_T0000020;Name=PPP2R3B
HG003_chrY	CAT	exon	130621	131205	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	131055	131205	.	-	1	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	131055	131057	.	-	0	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=stop_codon:HG003_chrY_T0000020;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	131206	135293	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000020:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	135294	135400	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	135294	135400	.	-	0	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135401	135467	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000020:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	135468	135586	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	135468	135586	.	-	2	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135587	137574	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000020:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	137575	137750	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	137575	137750	.	-	1	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	137751	138077	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000020:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138078	138167	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	138078	138167	.	-	1	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	138168	138663	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000020:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138664	138712	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	138664	138712	.	-	2	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	138713	141890	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000020:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	141891	142047	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	141891	142047	.	-	0	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142048	142555	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000020:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	142556	142642	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:7;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	142556	142642	.	-	0	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:7;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142643	143082	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000020:7;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143083	143157	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:8;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	143083	143157	.	-	0	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:8;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143158	143583	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000020:8;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143584	143686	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:9;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	143584	143686	.	-	1	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:9;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143687	143939	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000020:9;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143940	144043	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:10;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	143940	144043	.	-	0	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:10;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	144044	157739	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000020:10;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	157740	157925	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:11;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	157740	157925	.	-	0	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:11;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	157926	184177	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000020:11;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	184178	184717	.	-	.	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000020:12;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	184178	184501	.	-	0	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000020:12;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	184499	184501	.	-	0	source_transcript=ENST00000711115.1;source_transcript_name=PPP2R3B-234;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711115.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711115.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711115.1,ENST00000711115.1;transcript_id=HG003_chrY_T0000020;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000020;transcript_name=HG003_chrY_T0000020;gene_name=PPP2R3B;ID=start_codon:HG003_chrY_T0000020;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	130923	138492	1000	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711114.1;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=HG003_chrY_T0000021;gene_name=PPP2R3B;ID=HG003_chrY_T0000021;Name=PPP2R3B
HG003_chrY	CAT	exon	130923	131205	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711114.1;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000021;transcript_name=HG003_chrY_T0000021;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000021:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	131206	135293	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711114.1;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000021;transcript_name=HG003_chrY_T0000021;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000021:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	135294	135586	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711114.1;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000021;transcript_name=HG003_chrY_T0000021;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000021:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135587	137574	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711114.1;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000021;transcript_name=HG003_chrY_T0000021;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000021:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	137575	137750	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711114.1;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000021;transcript_name=HG003_chrY_T0000021;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000021:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	137751	138077	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711114.1;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000021;transcript_name=HG003_chrY_T0000021;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000021:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138078	138492	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711114.1;transcript_id=HG003_chrY_T0000021;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000021;transcript_name=HG003_chrY_T0000021;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000021:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	130923	138492	1000	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=HG003_chrY_T0000022;gene_name=PPP2R3B;ID=HG003_chrY_T0000022;Name=PPP2R3B
HG003_chrY	CAT	exon	130923	131205	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000022;transcript_name=HG003_chrY_T0000022;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000022:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	131206	135293	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000022;transcript_name=HG003_chrY_T0000022;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000022:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	135294	135400	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000022;transcript_name=HG003_chrY_T0000022;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000022:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135401	135467	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000022;transcript_name=HG003_chrY_T0000022;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000022:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	135468	135586	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000022;transcript_name=HG003_chrY_T0000022;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000022:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135587	137574	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000022;transcript_name=HG003_chrY_T0000022;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000022:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	137575	137750	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000022;transcript_name=HG003_chrY_T0000022;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000022:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	137751	138077	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000022;transcript_name=HG003_chrY_T0000022;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000022:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138078	138492	.	-	.	source_transcript=ENST00000711114.1;source_transcript_name=PPP2R3B-233;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711114.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711114.1;transcript_score=298.991;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000022;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000022;transcript_name=HG003_chrY_T0000022;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000022:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	130927	143674	1000	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=HG003_chrY_T0000023;Name=PPP2R3B
HG003_chrY	CAT	exon	130927	135586	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000023:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135587	137574	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000023:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	137575	137750	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000023:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	137751	138077	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000023:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138078	138712	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000023:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	138713	141890	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000023:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	141891	142047	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000023:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142048	142555	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000023:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	142556	142642	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000023:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142643	143082	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000023:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143083	143157	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000023:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143158	143583	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000023:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143584	143674	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711113.1;transcript_id=HG003_chrY_T0000023;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000023;transcript_name=HG003_chrY_T0000023;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000023:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	130927	143674	1000	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=HG003_chrY_T0000024;Name=PPP2R3B
HG003_chrY	CAT	exon	130927	135400	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000024:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135401	135467	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000024:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	135468	135586	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000024:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135587	137574	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000024:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	137575	137750	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000024:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	137751	138077	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000024:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138078	138712	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000024:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	138713	141890	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000024:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	141891	142047	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000024:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142048	142555	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000024:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	142556	142642	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000024:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142643	143082	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000024:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143083	143157	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000024:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143158	143583	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000024:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143584	143674	.	-	.	source_transcript=ENST00000711113.1;source_transcript_name=PPP2R3B-232;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711113.1;transcript_score=299.31100000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;transcript_id=HG003_chrY_T0000024;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000024;transcript_name=HG003_chrY_T0000024;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000024:7;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	135303	142004	1000	-	.	source_transcript=ENST00000711112.1;source_transcript_name=PPP2R3B-231;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711112.1;transcript_score=299.43899999999996;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711112.1,ENST00000711112.1;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=HG003_chrY_T0000025;gene_name=PPP2R3B;ID=HG003_chrY_T0000025;Name=PPP2R3B
HG003_chrY	CAT	exon	135303	135586	.	-	.	source_transcript=ENST00000711112.1;source_transcript_name=PPP2R3B-231;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711112.1;transcript_score=299.43899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711112.1,ENST00000711112.1;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000025;transcript_name=HG003_chrY_T0000025;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000025:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	135587	137574	.	-	.	source_transcript=ENST00000711112.1;source_transcript_name=PPP2R3B-231;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711112.1;transcript_score=299.43899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711112.1,ENST00000711112.1;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000025;transcript_name=HG003_chrY_T0000025;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000025:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	137575	137750	.	-	.	source_transcript=ENST00000711112.1;source_transcript_name=PPP2R3B-231;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711112.1;transcript_score=299.43899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711112.1,ENST00000711112.1;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000025;transcript_name=HG003_chrY_T0000025;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000025:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	137751	138077	.	-	.	source_transcript=ENST00000711112.1;source_transcript_name=PPP2R3B-231;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711112.1;transcript_score=299.43899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711112.1,ENST00000711112.1;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000025;transcript_name=HG003_chrY_T0000025;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000025:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138078	138167	.	-	.	source_transcript=ENST00000711112.1;source_transcript_name=PPP2R3B-231;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711112.1;transcript_score=299.43899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711112.1,ENST00000711112.1;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000025;transcript_name=HG003_chrY_T0000025;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000025:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	138168	138663	.	-	.	source_transcript=ENST00000711112.1;source_transcript_name=PPP2R3B-231;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711112.1;transcript_score=299.43899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711112.1,ENST00000711112.1;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000025;transcript_name=HG003_chrY_T0000025;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000025:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138664	138712	.	-	.	source_transcript=ENST00000711112.1;source_transcript_name=PPP2R3B-231;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711112.1;transcript_score=299.43899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711112.1,ENST00000711112.1;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000025;transcript_name=HG003_chrY_T0000025;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000025:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	138713	141890	.	-	.	source_transcript=ENST00000711112.1;source_transcript_name=PPP2R3B-231;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711112.1;transcript_score=299.43899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711112.1,ENST00000711112.1;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000025;transcript_name=HG003_chrY_T0000025;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000025:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	141891	142004	.	-	.	source_transcript=ENST00000711112.1;source_transcript_name=PPP2R3B-231;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711112.1;transcript_score=299.43899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711112.1,ENST00000711112.1;transcript_id=HG003_chrY_T0000025;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000025;transcript_name=HG003_chrY_T0000025;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000025:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	137575	142001	1000	-	.	source_transcript=ENST00000711128.1;source_transcript_name=PPP2R3B-240;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711128.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711128.1,ENST00000711128.1;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=HG003_chrY_T0000026;gene_name=PPP2R3B;ID=HG003_chrY_T0000026;Name=PPP2R3B
HG003_chrY	CAT	exon	137575	137750	.	-	.	source_transcript=ENST00000711128.1;source_transcript_name=PPP2R3B-240;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711128.1,ENST00000711128.1;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000026;transcript_name=HG003_chrY_T0000026;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000026:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	137751	138077	.	-	.	source_transcript=ENST00000711128.1;source_transcript_name=PPP2R3B-240;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711128.1,ENST00000711128.1;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000026;transcript_name=HG003_chrY_T0000026;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000026:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138078	138167	.	-	.	source_transcript=ENST00000711128.1;source_transcript_name=PPP2R3B-240;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711128.1,ENST00000711128.1;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000026;transcript_name=HG003_chrY_T0000026;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000026:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	138168	138663	.	-	.	source_transcript=ENST00000711128.1;source_transcript_name=PPP2R3B-240;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711128.1,ENST00000711128.1;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000026;transcript_name=HG003_chrY_T0000026;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000026:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	138664	139018	.	-	.	source_transcript=ENST00000711128.1;source_transcript_name=PPP2R3B-240;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711128.1,ENST00000711128.1;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000026;transcript_name=HG003_chrY_T0000026;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000026:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	139019	141890	.	-	.	source_transcript=ENST00000711128.1;source_transcript_name=PPP2R3B-240;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711128.1,ENST00000711128.1;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000026;transcript_name=HG003_chrY_T0000026;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000026:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	141891	142001	.	-	.	source_transcript=ENST00000711128.1;source_transcript_name=PPP2R3B-240;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711128.1,ENST00000711128.1;transcript_id=HG003_chrY_T0000026;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000026;transcript_name=HG003_chrY_T0000026;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000026:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	138692	142896	1000	-	.	source_transcript=ENST00000711127.1;source_transcript_name=PPP2R3B-239;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711127.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711127.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711127.1,ENST00000711127.1;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=HG003_chrY_T0000027;gene_name=PPP2R3B;ID=HG003_chrY_T0000027;Name=PPP2R3B
HG003_chrY	CAT	exon	138692	138712	.	-	.	source_transcript=ENST00000711127.1;source_transcript_name=PPP2R3B-239;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711127.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711127.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711127.1,ENST00000711127.1;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000027;transcript_name=HG003_chrY_T0000027;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000027:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	138713	141890	.	-	.	source_transcript=ENST00000711127.1;source_transcript_name=PPP2R3B-239;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711127.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711127.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711127.1,ENST00000711127.1;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000027;transcript_name=HG003_chrY_T0000027;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000027:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	141891	142047	.	-	.	source_transcript=ENST00000711127.1;source_transcript_name=PPP2R3B-239;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711127.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711127.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711127.1,ENST00000711127.1;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000027;transcript_name=HG003_chrY_T0000027;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000027:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142048	142555	.	-	.	source_transcript=ENST00000711127.1;source_transcript_name=PPP2R3B-239;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711127.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711127.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711127.1,ENST00000711127.1;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000027;transcript_name=HG003_chrY_T0000027;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000027:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	142556	142896	.	-	.	source_transcript=ENST00000711127.1;source_transcript_name=PPP2R3B-239;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711127.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711127.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711127.1,ENST00000711127.1;transcript_id=HG003_chrY_T0000027;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000027;transcript_name=HG003_chrY_T0000027;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000027:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	141271	184765	1000	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=HG003_chrY_T0000028;Name=PPP2R3B
HG003_chrY	CAT	exon	141271	142047	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000028:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142048	142555	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000028:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	142556	142642	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000028:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	142643	143082	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000028:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143083	143157	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000028:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143158	143583	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000028:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143584	143686	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000028:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143687	143939	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000028:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143940	144043	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000028:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	144044	157739	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000028:4;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	157740	157925	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000028:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	157926	158589	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000028:5;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	158590	158667	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000028:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	158668	184177	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000028:6;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	184178	184765	.	-	.	source_transcript=ENST00000711126.1;source_transcript_name=PPP2R3B-238;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711126.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711126.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711126.1,ENST00000711126.1;transcript_id=HG003_chrY_T0000028;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000028;transcript_name=HG003_chrY_T0000028;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000028:7;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	143019	157851	1000	-	.	source_transcript=ENST00000711125.1;source_transcript_name=PPP2R3B-237;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711125.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711125.1;transcript_score=299.563;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711125.1,ENST00000711125.1;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=HG003_chrY_T0000029;gene_name=PPP2R3B;ID=HG003_chrY_T0000029;Name=PPP2R3B
HG003_chrY	CAT	exon	143019	143157	.	-	.	source_transcript=ENST00000711125.1;source_transcript_name=PPP2R3B-237;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711125.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711125.1;transcript_score=299.563;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711125.1,ENST00000711125.1;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000029;transcript_name=HG003_chrY_T0000029;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000029:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143158	143583	.	-	.	source_transcript=ENST00000711125.1;source_transcript_name=PPP2R3B-237;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711125.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711125.1;transcript_score=299.563;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711125.1,ENST00000711125.1;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000029;transcript_name=HG003_chrY_T0000029;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000029:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143584	143686	.	-	.	source_transcript=ENST00000711125.1;source_transcript_name=PPP2R3B-237;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711125.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711125.1;transcript_score=299.563;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711125.1,ENST00000711125.1;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000029;transcript_name=HG003_chrY_T0000029;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000029:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143687	143939	.	-	.	source_transcript=ENST00000711125.1;source_transcript_name=PPP2R3B-237;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711125.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711125.1;transcript_score=299.563;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711125.1,ENST00000711125.1;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000029;transcript_name=HG003_chrY_T0000029;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000029:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143940	144043	.	-	.	source_transcript=ENST00000711125.1;source_transcript_name=PPP2R3B-237;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711125.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711125.1;transcript_score=299.563;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711125.1,ENST00000711125.1;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000029;transcript_name=HG003_chrY_T0000029;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000029:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	144044	157739	.	-	.	source_transcript=ENST00000711125.1;source_transcript_name=PPP2R3B-237;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711125.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711125.1;transcript_score=299.563;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711125.1,ENST00000711125.1;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000029;transcript_name=HG003_chrY_T0000029;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000029:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	157740	157851	.	-	.	source_transcript=ENST00000711125.1;source_transcript_name=PPP2R3B-237;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711125.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711125.1;transcript_score=299.563;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711125.1,ENST00000711125.1;transcript_id=HG003_chrY_T0000029;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000029;transcript_name=HG003_chrY_T0000029;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000029:3;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	143102	144188	1000	-	.	source_transcript=ENST00000711124.1;source_transcript_name=PPP2R3B-236;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711124.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711124.1;transcript_score=299.755;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711124.1,ENST00000711124.1;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=HG003_chrY_T0000030;gene_name=PPP2R3B;ID=HG003_chrY_T0000030;Name=PPP2R3B
HG003_chrY	CAT	exon	143102	143157	.	-	.	source_transcript=ENST00000711124.1;source_transcript_name=PPP2R3B-236;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711124.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711124.1;transcript_score=299.755;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711124.1,ENST00000711124.1;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000030;transcript_name=HG003_chrY_T0000030;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000030:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143158	143583	.	-	.	source_transcript=ENST00000711124.1;source_transcript_name=PPP2R3B-236;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711124.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711124.1;transcript_score=299.755;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711124.1,ENST00000711124.1;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000030;transcript_name=HG003_chrY_T0000030;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000030:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143584	143686	.	-	.	source_transcript=ENST00000711124.1;source_transcript_name=PPP2R3B-236;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711124.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711124.1;transcript_score=299.755;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711124.1,ENST00000711124.1;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000030;transcript_name=HG003_chrY_T0000030;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000030:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	143687	143939	.	-	.	source_transcript=ENST00000711124.1;source_transcript_name=PPP2R3B-236;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711124.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711124.1;transcript_score=299.755;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711124.1,ENST00000711124.1;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000030;transcript_name=HG003_chrY_T0000030;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000030:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	143940	144188	.	-	.	source_transcript=ENST00000711124.1;source_transcript_name=PPP2R3B-236;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711124.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711124.1;transcript_score=299.755;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711124.1,ENST00000711124.1;transcript_id=HG003_chrY_T0000030;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000030;transcript_name=HG003_chrY_T0000030;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000030:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	143961	172333	100	-	.	source_transcript=ENST00000711123.1;source_transcript_name=PPP2R3B-235;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711123.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711123.1,ENST00000711123.1;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_G0000007;transcript_name=HG003_chrY_T0000031;gene_name=PPP2R3B;ID=HG003_chrY_T0000031;Name=PPP2R3B
HG003_chrY	CAT	exon	143961	144043	.	-	.	source_transcript=ENST00000711123.1;source_transcript_name=PPP2R3B-235;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711123.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711123.1,ENST00000711123.1;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000031;transcript_name=HG003_chrY_T0000031;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000031:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	143961	144043	.	-	0	source_transcript=ENST00000711123.1;source_transcript_name=PPP2R3B-235;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711123.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711123.1,ENST00000711123.1;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000031;transcript_name=HG003_chrY_T0000031;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000031:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	144044	157739	.	-	.	source_transcript=ENST00000711123.1;source_transcript_name=PPP2R3B-235;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711123.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711123.1,ENST00000711123.1;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000031;transcript_name=HG003_chrY_T0000031;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000031:0;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	157740	157925	.	-	.	source_transcript=ENST00000711123.1;source_transcript_name=PPP2R3B-235;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711123.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711123.1,ENST00000711123.1;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000031;transcript_name=HG003_chrY_T0000031;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000031:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	157740	157925	.	-	0	source_transcript=ENST00000711123.1;source_transcript_name=PPP2R3B-235;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711123.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711123.1,ENST00000711123.1;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000031;transcript_name=HG003_chrY_T0000031;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000031:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	157926	171820	.	-	.	source_transcript=ENST00000711123.1;source_transcript_name=PPP2R3B-235;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711123.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711123.1,ENST00000711123.1;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000031;transcript_name=HG003_chrY_T0000031;gene_name=PPP2R3B;ID=intron:HG003_chrY_T0000031:1;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	171821	172333	.	-	.	source_transcript=ENST00000711123.1;source_transcript_name=PPP2R3B-235;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711123.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711123.1,ENST00000711123.1;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000031;transcript_name=HG003_chrY_T0000031;gene_name=PPP2R3B;ID=exon:HG003_chrY_T0000031:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	171821	172060	.	-	0	source_transcript=ENST00000711123.1;source_transcript_name=PPP2R3B-235;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711123.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711123.1,ENST00000711123.1;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000031;transcript_name=HG003_chrY_T0000031;gene_name=PPP2R3B;ID=CDS:HG003_chrY_T0000031:2;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	172058	172060	.	-	0	source_transcript=ENST00000711123.1;source_transcript_name=PPP2R3B-235;source_gene=ENSG00000292327.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292327.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711123.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP2R3B;alternative_source_transcripts=ENST00000711123.1,ENST00000711123.1;transcript_id=HG003_chrY_T0000031;gene_id=HG003_chrY_G0000007;Parent=HG003_chrY_T0000031;transcript_name=HG003_chrY_T0000031;gene_name=PPP2R3B;ID=start_codon:HG003_chrY_T0000031;Name=PPP2R3B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	184772	315056	.	+	.	source_gene_common_name=ENSG00000292349;source_gene=ENSG00000292349.2;alternative_source_transcripts=ENST00000850672.1,ENST00000850672.1;gene_id=HG003_chrY_G0000008;gene_biotype=lncRNA;gene_name=ENSG00000292349;gene_sources=liftoff;ID=HG003_chrY_G0000008;Name=ENSG00000292349
HG003_chrY	CAT	transcript	184772	219747	1000	+	.	source_transcript=ENST00000850672.1;source_transcript_name=ENST00000850672;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850672.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850672.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850672.1,ENST00000850672.1;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=HG003_chrY_T0000032;gene_name=ENSG00000292349;ID=HG003_chrY_T0000032;Name=ENSG00000292349
HG003_chrY	CAT	exon	184772	184882	.	+	.	source_transcript=ENST00000850672.1;source_transcript_name=ENST00000850672;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850672.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850672.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850672.1,ENST00000850672.1;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000032;transcript_name=HG003_chrY_T0000032;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000032:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	184883	219435	.	+	.	source_transcript=ENST00000850672.1;source_transcript_name=ENST00000850672;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850672.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850672.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850672.1,ENST00000850672.1;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000032;transcript_name=HG003_chrY_T0000032;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000032:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	219436	219747	.	+	.	source_transcript=ENST00000850672.1;source_transcript_name=ENST00000850672;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850672.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850672.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850672.1,ENST00000850672.1;transcript_id=HG003_chrY_T0000032;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000032;transcript_name=HG003_chrY_T0000032;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000032:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	184776	219742	1000	+	.	source_transcript=ENST00000850673.1;source_transcript_name=ENST00000850673;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850673.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850673.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850673.1,ENST00000850673.1;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=HG003_chrY_T0000033;gene_name=ENSG00000292349;ID=HG003_chrY_T0000033;Name=ENSG00000292349
HG003_chrY	CAT	exon	184776	184882	.	+	.	source_transcript=ENST00000850673.1;source_transcript_name=ENST00000850673;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850673.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850673.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850673.1,ENST00000850673.1;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000033;transcript_name=HG003_chrY_T0000033;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000033:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	184883	216745	.	+	.	source_transcript=ENST00000850673.1;source_transcript_name=ENST00000850673;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850673.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850673.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850673.1,ENST00000850673.1;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000033;transcript_name=HG003_chrY_T0000033;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000033:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	216746	217234	.	+	.	source_transcript=ENST00000850673.1;source_transcript_name=ENST00000850673;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850673.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850673.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850673.1,ENST00000850673.1;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000033;transcript_name=HG003_chrY_T0000033;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000033:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	217235	219435	.	+	.	source_transcript=ENST00000850673.1;source_transcript_name=ENST00000850673;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850673.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850673.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850673.1,ENST00000850673.1;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000033;transcript_name=HG003_chrY_T0000033;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000033:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	219436	219742	.	+	.	source_transcript=ENST00000850673.1;source_transcript_name=ENST00000850673;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850673.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850673.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850673.1,ENST00000850673.1;transcript_id=HG003_chrY_T0000033;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000033;transcript_name=HG003_chrY_T0000033;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000033:2;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	184790	204264	1000	+	.	source_transcript=ENST00000850833.1;source_transcript_name=ENST00000850833;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850833.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850833.1,ENST00000850833.1;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=HG003_chrY_T0000034;gene_name=ENSG00000292349;ID=HG003_chrY_T0000034;Name=ENSG00000292349
HG003_chrY	CAT	exon	184790	185100	.	+	.	source_transcript=ENST00000850833.1;source_transcript_name=ENST00000850833;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850833.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850833.1,ENST00000850833.1;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000034;transcript_name=HG003_chrY_T0000034;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000034:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	185101	203219	.	+	.	source_transcript=ENST00000850833.1;source_transcript_name=ENST00000850833;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850833.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850833.1,ENST00000850833.1;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000034;transcript_name=HG003_chrY_T0000034;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000034:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	203220	204264	.	+	.	source_transcript=ENST00000850833.1;source_transcript_name=ENST00000850833;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850833.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850833.1,ENST00000850833.1;transcript_id=HG003_chrY_T0000034;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000034;transcript_name=HG003_chrY_T0000034;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000034:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	184793	271313	1000	+	.	source_transcript=ENST00000850674.1;source_transcript_name=ENST00000850674;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850674.1;transcript_score=299.84;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850674.1,ENST00000850674.1;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=HG003_chrY_T0000035;gene_name=ENSG00000292349;ID=HG003_chrY_T0000035;Name=ENSG00000292349
HG003_chrY	CAT	exon	184793	185100	.	+	.	source_transcript=ENST00000850674.1;source_transcript_name=ENST00000850674;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850674.1;transcript_score=299.84;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850674.1,ENST00000850674.1;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000035;transcript_name=HG003_chrY_T0000035;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000035:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	185101	258608	.	+	.	source_transcript=ENST00000850674.1;source_transcript_name=ENST00000850674;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850674.1;transcript_score=299.84;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850674.1,ENST00000850674.1;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000035;transcript_name=HG003_chrY_T0000035;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000035:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	258609	259221	.	+	.	source_transcript=ENST00000850674.1;source_transcript_name=ENST00000850674;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850674.1;transcript_score=299.84;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850674.1,ENST00000850674.1;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000035;transcript_name=HG003_chrY_T0000035;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000035:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	259222	268681	.	+	.	source_transcript=ENST00000850674.1;source_transcript_name=ENST00000850674;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850674.1;transcript_score=299.84;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850674.1,ENST00000850674.1;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000035;transcript_name=HG003_chrY_T0000035;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000035:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	268682	268802	.	+	.	source_transcript=ENST00000850674.1;source_transcript_name=ENST00000850674;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850674.1;transcript_score=299.84;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850674.1,ENST00000850674.1;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000035;transcript_name=HG003_chrY_T0000035;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000035:2;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	268803	269878	.	+	.	source_transcript=ENST00000850674.1;source_transcript_name=ENST00000850674;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850674.1;transcript_score=299.84;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850674.1,ENST00000850674.1;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000035;transcript_name=HG003_chrY_T0000035;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000035:2;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	269879	270077	.	+	.	source_transcript=ENST00000850674.1;source_transcript_name=ENST00000850674;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850674.1;transcript_score=299.84;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850674.1,ENST00000850674.1;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000035;transcript_name=HG003_chrY_T0000035;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000035:3;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	270078	270683	.	+	.	source_transcript=ENST00000850674.1;source_transcript_name=ENST00000850674;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850674.1;transcript_score=299.84;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850674.1,ENST00000850674.1;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000035;transcript_name=HG003_chrY_T0000035;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000035:3;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	270684	271313	.	+	.	source_transcript=ENST00000850674.1;source_transcript_name=ENST00000850674;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850674.1;transcript_score=299.84;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850674.1,ENST00000850674.1;transcript_id=HG003_chrY_T0000035;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000035;transcript_name=HG003_chrY_T0000035;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000035:4;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	184845	315056	1000	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=HG003_chrY_T0000036;Name=ENSG00000292349
HG003_chrY	CAT	exon	184845	185100	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000036:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	185101	233966	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000036:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	233967	234081	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000036:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	234082	235610	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000036:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	235611	235777	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000036:2;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	235778	258608	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000036:2;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	258609	259221	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000036:3;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	259222	286383	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000036:3;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	286384	286524	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000036:4;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	286525	293086	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000036:4;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	293087	293202	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000036:5;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	293203	299145	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000036:5;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	299146	299219	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000036:6;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	299220	313993	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000036:6;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	313994	315056	.	+	.	source_transcript=ENST00000850675.1;source_transcript_name=ENST00000850675;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850675.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850675.1,ENST00000850675.1;transcript_id=HG003_chrY_T0000036;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000036;transcript_name=HG003_chrY_T0000036;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000036:7;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	203505	216504	1000	+	.	source_transcript=ENST00000850676.1;source_transcript_name=ENST00000850676;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850676.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850676.1,ENST00000850676.1;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=HG003_chrY_T0000038;gene_name=ENSG00000292349;ID=HG003_chrY_T0000038;Name=ENSG00000292349
HG003_chrY	CAT	exon	203505	204137	.	+	.	source_transcript=ENST00000850676.1;source_transcript_name=ENST00000850676;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850676.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850676.1,ENST00000850676.1;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000038;transcript_name=HG003_chrY_T0000038;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000038:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	204138	207059	.	+	.	source_transcript=ENST00000850676.1;source_transcript_name=ENST00000850676;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850676.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850676.1,ENST00000850676.1;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000038;transcript_name=HG003_chrY_T0000038;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000038:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	207060	207306	.	+	.	source_transcript=ENST00000850676.1;source_transcript_name=ENST00000850676;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850676.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850676.1,ENST00000850676.1;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000038;transcript_name=HG003_chrY_T0000038;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000038:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	207307	213937	.	+	.	source_transcript=ENST00000850676.1;source_transcript_name=ENST00000850676;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850676.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850676.1,ENST00000850676.1;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000038;transcript_name=HG003_chrY_T0000038;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000038:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	213938	214226	.	+	.	source_transcript=ENST00000850676.1;source_transcript_name=ENST00000850676;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850676.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850676.1,ENST00000850676.1;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000038;transcript_name=HG003_chrY_T0000038;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000038:2;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	214227	216130	.	+	.	source_transcript=ENST00000850676.1;source_transcript_name=ENST00000850676;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850676.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850676.1,ENST00000850676.1;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000038;transcript_name=HG003_chrY_T0000038;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000038:2;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	216131	216504	.	+	.	source_transcript=ENST00000850676.1;source_transcript_name=ENST00000850676;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850676.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850676.1,ENST00000850676.1;transcript_id=HG003_chrY_T0000038;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000038;transcript_name=HG003_chrY_T0000038;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000038:3;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	203761	268979	1000	+	.	source_transcript=ENST00000850677.1;source_transcript_name=ENST00000850677;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850677.1;transcript_score=299.762;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850677.1,ENST00000850677.1;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=HG003_chrY_T0000039;gene_name=ENSG00000292349;ID=HG003_chrY_T0000039;Name=ENSG00000292349
HG003_chrY	CAT	exon	203761	204108	.	+	.	source_transcript=ENST00000850677.1;source_transcript_name=ENST00000850677;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850677.1;transcript_score=299.762;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850677.1,ENST00000850677.1;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000039;transcript_name=HG003_chrY_T0000039;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000039:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	204109	258608	.	+	.	source_transcript=ENST00000850677.1;source_transcript_name=ENST00000850677;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850677.1;transcript_score=299.762;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850677.1,ENST00000850677.1;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000039;transcript_name=HG003_chrY_T0000039;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000039:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	258609	259221	.	+	.	source_transcript=ENST00000850677.1;source_transcript_name=ENST00000850677;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850677.1;transcript_score=299.762;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850677.1,ENST00000850677.1;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000039;transcript_name=HG003_chrY_T0000039;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000039:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	259222	268681	.	+	.	source_transcript=ENST00000850677.1;source_transcript_name=ENST00000850677;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850677.1;transcript_score=299.762;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850677.1,ENST00000850677.1;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000039;transcript_name=HG003_chrY_T0000039;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000039:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	268682	268979	.	+	.	source_transcript=ENST00000850677.1;source_transcript_name=ENST00000850677;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850677.1;transcript_score=299.762;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850677.1,ENST00000850677.1;transcript_id=HG003_chrY_T0000039;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000039;transcript_name=HG003_chrY_T0000039;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000039:2;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	212617	214257	1000	+	.	source_transcript=ENST00000850678.1;source_transcript_name=ENST00000850678;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850678.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850678.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850678.1,ENST00000850678.1;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=HG003_chrY_T0000040;gene_name=ENSG00000292349;ID=HG003_chrY_T0000040;Name=ENSG00000292349
HG003_chrY	CAT	exon	212617	213062	.	+	.	source_transcript=ENST00000850678.1;source_transcript_name=ENST00000850678;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850678.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850678.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850678.1,ENST00000850678.1;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000040;transcript_name=HG003_chrY_T0000040;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000040:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	213063	213937	.	+	.	source_transcript=ENST00000850678.1;source_transcript_name=ENST00000850678;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850678.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850678.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850678.1,ENST00000850678.1;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000040;transcript_name=HG003_chrY_T0000040;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000040:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	213938	214257	.	+	.	source_transcript=ENST00000850678.1;source_transcript_name=ENST00000850678;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850678.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850678.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850678.1,ENST00000850678.1;transcript_id=HG003_chrY_T0000040;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000040;transcript_name=HG003_chrY_T0000040;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000040:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	213937	219747	1000	+	.	source_transcript=ENST00000850679.1;source_transcript_name=ENST00000850679;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850679.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850679.1,ENST00000850679.1;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=HG003_chrY_T0000041;gene_name=ENSG00000292349;ID=HG003_chrY_T0000041;Name=ENSG00000292349
HG003_chrY	CAT	exon	213937	214000	.	+	.	source_transcript=ENST00000850679.1;source_transcript_name=ENST00000850679;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850679.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850679.1,ENST00000850679.1;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000041;transcript_name=HG003_chrY_T0000041;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000041:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	214001	216610	.	+	.	source_transcript=ENST00000850679.1;source_transcript_name=ENST00000850679;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850679.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850679.1,ENST00000850679.1;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000041;transcript_name=HG003_chrY_T0000041;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000041:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	216611	217234	.	+	.	source_transcript=ENST00000850679.1;source_transcript_name=ENST00000850679;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850679.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850679.1,ENST00000850679.1;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000041;transcript_name=HG003_chrY_T0000041;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000041:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	217235	219435	.	+	.	source_transcript=ENST00000850679.1;source_transcript_name=ENST00000850679;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850679.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850679.1,ENST00000850679.1;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000041;transcript_name=HG003_chrY_T0000041;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000041:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	219436	219747	.	+	.	source_transcript=ENST00000850679.1;source_transcript_name=ENST00000850679;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850679.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850679.1,ENST00000850679.1;transcript_id=HG003_chrY_T0000041;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000041;transcript_name=HG003_chrY_T0000041;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000041:2;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	216970	219744	1000	+	.	source_transcript=ENST00000850832.1;source_transcript_name=ENST00000850832;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850832.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850832.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850832.1,ENST00000850832.1;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_G0000008;transcript_name=HG003_chrY_T0000042;gene_name=ENSG00000292349;ID=HG003_chrY_T0000042;Name=ENSG00000292349
HG003_chrY	CAT	exon	216970	217175	.	+	.	source_transcript=ENST00000850832.1;source_transcript_name=ENST00000850832;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850832.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850832.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850832.1,ENST00000850832.1;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000042;transcript_name=HG003_chrY_T0000042;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000042:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	217176	219435	.	+	.	source_transcript=ENST00000850832.1;source_transcript_name=ENST00000850832;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850832.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850832.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850832.1,ENST00000850832.1;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000042;transcript_name=HG003_chrY_T0000042;gene_name=ENSG00000292349;ID=intron:HG003_chrY_T0000042:0;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	219436	219744	.	+	.	source_transcript=ENST00000850832.1;source_transcript_name=ENST00000850832;source_gene=ENSG00000292349.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292349.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850832.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850832.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292349;alternative_source_transcripts=ENST00000850832.1,ENST00000850832.1;transcript_id=HG003_chrY_T0000042;gene_id=HG003_chrY_G0000008;Parent=HG003_chrY_T0000042;transcript_name=HG003_chrY_T0000042;gene_name=ENSG00000292349;ID=exon:HG003_chrY_T0000042:1;Name=ENSG00000292349;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	185910	186200	.	-	.	source_gene_common_name=Metazoa_SRP;source_gene=ENSG00000292350.1;alternative_source_transcripts=ENST00000711149.1,ENST00000711149.1;gene_id=HG003_chrY_G0000009;gene_biotype=misc_RNA;gene_name=Metazoa_SRP;gene_sources=liftoff;ID=HG003_chrY_G0000009;Name=Metazoa_SRP
HG003_chrY	CAT	transcript	185910	186200	1000	-	.	source_transcript=ENST00000711149.1;source_transcript_name=Metazoa_SRP.216-201;source_gene=ENSG00000292350.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000292350.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000711149.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711149.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=Metazoa_SRP;alternative_source_transcripts=ENST00000711149.1,ENST00000711149.1;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_G0000009;transcript_name=HG003_chrY_T0000037;gene_name=Metazoa_SRP;ID=HG003_chrY_T0000037;Name=Metazoa_SRP
HG003_chrY	CAT	exon	185910	186200	.	-	.	source_transcript=ENST00000711149.1;source_transcript_name=Metazoa_SRP.216-201;source_gene=ENSG00000292350.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000292350.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000711149.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711149.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=Metazoa_SRP;alternative_source_transcripts=ENST00000711149.1,ENST00000711149.1;transcript_id=HG003_chrY_T0000037;gene_id=HG003_chrY_G0000009;Parent=HG003_chrY_T0000037;transcript_name=HG003_chrY_T0000037;gene_name=Metazoa_SRP;ID=exon:HG003_chrY_T0000037:0;Name=Metazoa_SRP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	328399	328726	.	-	.	source_gene_common_name=FABP5P13;source_gene=ENSG00000292352.1;alternative_source_transcripts=ENST00000711147.1,ENST00000711147.1;gene_id=HG003_chrY_G0000010;gene_biotype=processed_pseudogene;gene_name=FABP5P13;gene_sources=liftoff;ID=HG003_chrY_G0000010;Name=FABP5P13
HG003_chrY	CAT	transcript	328399	328726	1000	-	.	source_transcript=ENST00000711147.1;source_transcript_name=FABP5P13-204;source_gene=ENSG00000292352.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292352.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711147.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711147.1;transcript_score=199.695;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FABP5P13;alternative_source_transcripts=ENST00000711147.1,ENST00000711147.1;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000010;Parent=HG003_chrY_G0000010;transcript_name=HG003_chrY_T0000043;gene_name=FABP5P13;ID=HG003_chrY_T0000043;Name=FABP5P13
HG003_chrY	CAT	exon	328399	328726	.	-	.	source_transcript=ENST00000711147.1;source_transcript_name=FABP5P13-204;source_gene=ENSG00000292352.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292352.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711147.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711147.1;transcript_score=199.695;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FABP5P13;alternative_source_transcripts=ENST00000711147.1,ENST00000711147.1;transcript_id=HG003_chrY_T0000043;gene_id=HG003_chrY_G0000010;Parent=HG003_chrY_T0000043;transcript_name=HG003_chrY_T0000043;gene_name=FABP5P13;ID=exon:HG003_chrY_T0000043:0;Name=FABP5P13;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	350782	350898	.	-	.	source_gene_common_name=KRT18P53;source_gene=ENSG00000292353.1;alternative_source_transcripts=ENST00000711146.1,ENST00000711146.1;gene_id=HG003_chrY_G0000011;gene_biotype=processed_pseudogene;gene_name=KRT18P53;gene_sources=liftoff;ID=HG003_chrY_G0000011;Name=KRT18P53
HG003_chrY	CAT	transcript	350782	350898	1000	-	.	source_transcript=ENST00000711146.1;source_transcript_name=KRT18P53-204;source_gene=ENSG00000292353.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292353.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711146.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711146.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KRT18P53;alternative_source_transcripts=ENST00000711146.1,ENST00000711146.1;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000011;Parent=HG003_chrY_G0000011;transcript_name=HG003_chrY_T0000044;gene_name=KRT18P53;ID=HG003_chrY_T0000044;Name=KRT18P53
HG003_chrY	CAT	exon	350782	350898	.	-	.	source_transcript=ENST00000711146.1;source_transcript_name=KRT18P53-204;source_gene=ENSG00000292353.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292353.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711146.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711146.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KRT18P53;alternative_source_transcripts=ENST00000711146.1,ENST00000711146.1;transcript_id=HG003_chrY_T0000044;gene_id=HG003_chrY_G0000011;Parent=HG003_chrY_T0000044;transcript_name=HG003_chrY_T0000044;gene_name=KRT18P53;ID=exon:HG003_chrY_T0000044:0;Name=KRT18P53;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	410502	411310	.	+	.	source_gene_common_name=ENSG00000310543;source_gene=ENSG00000310543.1;alternative_source_transcripts=ENST00000850702.1,ENST00000850702.1;gene_id=HG003_chrY_G0000012;gene_biotype=lncRNA;gene_name=ENSG00000310543;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000012;Name=ENSG00000310543
HG003_chrY	CAT	transcript	410502	411310	1000	+	.	source_transcript=ENST00000850702.1;source_transcript_name=ENST00000850702;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850702.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850702.1;transcript_score=297.802;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;alternative_source_transcripts=ENST00000850702.1,ENST00000850702.1;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_G0000012;transcript_name=HG003_chrY_T0000045;gene_name=ENSG00000310543;ID=HG003_chrY_T0000045;Name=ENSG00000310543
HG003_chrY	CAT	exon	410502	410897	.	+	.	source_transcript=ENST00000850702.1;source_transcript_name=ENST00000850702;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850702.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850702.1;transcript_score=297.802;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;alternative_source_transcripts=ENST00000850702.1,ENST00000850702.1;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_T0000045;transcript_name=HG003_chrY_T0000045;gene_name=ENSG00000310543;ID=exon:HG003_chrY_T0000045:0;Name=ENSG00000310543;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	410898	411073	.	+	.	source_transcript=ENST00000850702.1;source_transcript_name=ENST00000850702;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850702.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850702.1;transcript_score=297.802;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;alternative_source_transcripts=ENST00000850702.1,ENST00000850702.1;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_T0000045;transcript_name=HG003_chrY_T0000045;gene_name=ENSG00000310543;ID=intron:HG003_chrY_T0000045:0;Name=ENSG00000310543;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	411074	411310	.	+	.	source_transcript=ENST00000850702.1;source_transcript_name=ENST00000850702;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850702.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850702.1;transcript_score=297.802;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;alternative_source_transcripts=ENST00000850702.1,ENST00000850702.1;transcript_id=HG003_chrY_T0000045;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_T0000045;transcript_name=HG003_chrY_T0000045;gene_name=ENSG00000310543;ID=exon:HG003_chrY_T0000045:1;Name=ENSG00000310543;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	410592	411310	1000	+	.	source_transcript=ENST00000850703.1;source_transcript_name=ENST00000850703;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850703.1;alignment_mode=transMap;normalized_transcript_id=ENST00000850703.1;transcript_score=197.846;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;alternative_source_transcripts=ENST00000850703.1;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_G0000012;transcript_name=HG003_chrY_T0000046;gene_name=ENSG00000310543;ID=HG003_chrY_T0000046;Name=ENSG00000310543
HG003_chrY	CAT	exon	410592	411310	.	+	.	source_transcript=ENST00000850703.1;source_transcript_name=ENST00000850703;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850703.1;alignment_mode=transMap;normalized_transcript_id=ENST00000850703.1;transcript_score=197.846;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;alternative_source_transcripts=ENST00000850703.1;transcript_id=HG003_chrY_T0000046;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_T0000046;transcript_name=HG003_chrY_T0000046;gene_name=ENSG00000310543;ID=exon:HG003_chrY_T0000046:0;Name=ENSG00000310543;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	410592	411310	1000	+	.	source_transcript=ENST00000850703.1;source_transcript_name=ENST00000850703;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850703.1;transcript_score=197.846;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_G0000012;transcript_name=HG003_chrY_T0000047;gene_name=ENSG00000310543;ID=HG003_chrY_T0000047;Name=ENSG00000310543
HG003_chrY	CAT	exon	410592	410897	.	+	.	source_transcript=ENST00000850703.1;source_transcript_name=ENST00000850703;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850703.1;transcript_score=197.846;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_T0000047;transcript_name=HG003_chrY_T0000047;gene_name=ENSG00000310543;ID=exon:HG003_chrY_T0000047:0;Name=ENSG00000310543;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	410898	410970	.	+	.	source_transcript=ENST00000850703.1;source_transcript_name=ENST00000850703;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850703.1;transcript_score=197.846;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_T0000047;transcript_name=HG003_chrY_T0000047;gene_name=ENSG00000310543;ID=intron:HG003_chrY_T0000047:0;Name=ENSG00000310543;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	410971	411310	.	+	.	source_transcript=ENST00000850703.1;source_transcript_name=ENST00000850703;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850703.1;transcript_score=197.846;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;transcript_id=HG003_chrY_T0000047;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_T0000047;transcript_name=HG003_chrY_T0000047;gene_name=ENSG00000310543;ID=exon:HG003_chrY_T0000047:1;Name=ENSG00000310543;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	410614	411310	1000	+	.	source_transcript=ENST00000850704.1;source_transcript_name=ENST00000850704;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850704.1;transcript_score=297.531;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;alternative_source_transcripts=ENST00000850704.1,ENST00000850704.1;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_G0000012;transcript_name=HG003_chrY_T0000048;gene_name=ENSG00000310543;ID=HG003_chrY_T0000048;Name=ENSG00000310543
HG003_chrY	CAT	exon	410614	410897	.	+	.	source_transcript=ENST00000850704.1;source_transcript_name=ENST00000850704;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850704.1;transcript_score=297.531;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;alternative_source_transcripts=ENST00000850704.1,ENST00000850704.1;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_T0000048;transcript_name=HG003_chrY_T0000048;gene_name=ENSG00000310543;ID=exon:HG003_chrY_T0000048:0;Name=ENSG00000310543;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	410898	411031	.	+	.	source_transcript=ENST00000850704.1;source_transcript_name=ENST00000850704;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850704.1;transcript_score=297.531;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;alternative_source_transcripts=ENST00000850704.1,ENST00000850704.1;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_T0000048;transcript_name=HG003_chrY_T0000048;gene_name=ENSG00000310543;ID=intron:HG003_chrY_T0000048:0;Name=ENSG00000310543;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	411032	411310	.	+	.	source_transcript=ENST00000850704.1;source_transcript_name=ENST00000850704;source_gene=ENSG00000310543.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310543.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850704.1;transcript_score=297.531;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310543;alternative_source_transcripts=ENST00000850704.1,ENST00000850704.1;transcript_id=HG003_chrY_T0000048;gene_id=HG003_chrY_G0000012;Parent=HG003_chrY_T0000048;transcript_name=HG003_chrY_T0000048;gene_name=ENSG00000310543;ID=exon:HG003_chrY_T0000048:1;Name=ENSG00000310543;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	434572	468841	.	+	.	source_gene_common_name=SHOX;source_gene=ENSG00000292354.1;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;gene_id=HG003_chrY_G0000013;gene_biotype=protein_coding;gene_name=SHOX;gene_sources=liftoff;ID=HG003_chrY_G0000013;Name=SHOX
HG003_chrY	CAT	transcript	434572	468841	100	+	.	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_G0000013;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=HG003_chrY_T0000049;Name=SHOX
HG003_chrY	CAT	exon	434572	434833	.	+	.	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=exon:HG003_chrY_T0000049:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	434834	440721	.	+	.	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=intron:HG003_chrY_T0000049:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	440722	441430	.	+	.	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=exon:HG003_chrY_T0000049:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	441154	441430	.	+	0	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=CDS:HG003_chrY_T0000049:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	441154	441156	.	+	0	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=start_codon:HG003_chrY_T0000049;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	441431	444874	.	+	.	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=intron:HG003_chrY_T0000049:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	444875	445083	.	+	.	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=exon:HG003_chrY_T0000049:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	444875	445083	.	+	2	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=CDS:HG003_chrY_T0000049:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	445084	450906	.	+	.	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=intron:HG003_chrY_T0000049:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	450907	450964	.	+	.	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=exon:HG003_chrY_T0000049:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	450907	450964	.	+	0	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=CDS:HG003_chrY_T0000049:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	450965	451084	.	+	.	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=intron:HG003_chrY_T0000049:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	451085	451173	.	+	.	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=exon:HG003_chrY_T0000049:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	451085	451173	.	+	2	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=CDS:HG003_chrY_T0000049:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	451174	468214	.	+	.	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=intron:HG003_chrY_T0000049:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	468215	468841	.	+	.	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=exon:HG003_chrY_T0000049:5;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	468215	468259	.	+	0	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=CDS:HG003_chrY_T0000049:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	468257	468259	.	+	0	source_transcript=ENST00000711143.1;source_transcript_name=SHOX-207;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711143.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711143.1,ENST00000711143.1;transcript_id=HG003_chrY_T0000049;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000049;transcript_name=HG003_chrY_T0000049;gene_name=SHOX;ID=stop_codon:HG003_chrY_T0000049;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	434572	456906	100	+	.	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_G0000013;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=HG003_chrY_T0000050;Name=SHOX
HG003_chrY	CAT	exon	434572	434833	.	+	.	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=exon:HG003_chrY_T0000050:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	434834	440721	.	+	.	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=intron:HG003_chrY_T0000050:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	440722	441430	.	+	.	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=exon:HG003_chrY_T0000050:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	441154	441430	.	+	0	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=CDS:HG003_chrY_T0000050:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	441154	441156	.	+	0	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=start_codon:HG003_chrY_T0000050;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	441431	444874	.	+	.	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=intron:HG003_chrY_T0000050:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	444875	445083	.	+	.	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=exon:HG003_chrY_T0000050:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	444875	445083	.	+	2	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=CDS:HG003_chrY_T0000050:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	445084	450906	.	+	.	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=intron:HG003_chrY_T0000050:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	450907	450964	.	+	.	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=exon:HG003_chrY_T0000050:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	450907	450964	.	+	0	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=CDS:HG003_chrY_T0000050:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	450965	451084	.	+	.	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=intron:HG003_chrY_T0000050:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	451085	451173	.	+	.	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=exon:HG003_chrY_T0000050:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	451085	451173	.	+	2	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=CDS:HG003_chrY_T0000050:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	451174	454475	.	+	.	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=intron:HG003_chrY_T0000050:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	454476	456906	.	+	.	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=exon:HG003_chrY_T0000050:5;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	454476	454721	.	+	0	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=CDS:HG003_chrY_T0000050:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	454719	454721	.	+	0	source_transcript=ENST00000711145.1;source_transcript_name=SHOX-208;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711145.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711145.1,ENST00000711145.1;transcript_id=HG003_chrY_T0000050;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000050;transcript_name=HG003_chrY_T0000050;gene_name=SHOX;ID=stop_codon:HG003_chrY_T0000050;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	441047	461019	100	+	.	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_G0000013;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=HG003_chrY_T0000051;Name=SHOX
HG003_chrY	CAT	exon	441047	441430	.	+	.	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=exon:HG003_chrY_T0000051:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	441154	441430	.	+	0	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=CDS:HG003_chrY_T0000051:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	441154	441156	.	+	0	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=start_codon:HG003_chrY_T0000051;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	441431	444874	.	+	.	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=intron:HG003_chrY_T0000051:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	444875	445083	.	+	.	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=exon:HG003_chrY_T0000051:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	444875	445083	.	+	2	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=CDS:HG003_chrY_T0000051:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	445084	450906	.	+	.	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=intron:HG003_chrY_T0000051:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	450907	450964	.	+	.	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=exon:HG003_chrY_T0000051:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	450907	450964	.	+	0	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=CDS:HG003_chrY_T0000051:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	450965	451084	.	+	.	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=intron:HG003_chrY_T0000051:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	451085	451173	.	+	.	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=exon:HG003_chrY_T0000051:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	451085	451173	.	+	2	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=CDS:HG003_chrY_T0000051:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	451174	454475	.	+	.	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=intron:HG003_chrY_T0000051:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	454476	461019	.	+	.	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=exon:HG003_chrY_T0000051:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	454476	454721	.	+	0	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=CDS:HG003_chrY_T0000051:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	454719	454721	.	+	0	source_transcript=ENST00000711142.1;source_transcript_name=SHOX-206;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711142.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711142.1,ENST00000711142.1;transcript_id=HG003_chrY_T0000051;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000051;transcript_name=HG003_chrY_T0000051;gene_name=SHOX;ID=stop_codon:HG003_chrY_T0000051;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	441063	468841	100	+	.	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_G0000013;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=HG003_chrY_T0000052;Name=SHOX
HG003_chrY	CAT	exon	441063	441430	.	+	.	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=exon:HG003_chrY_T0000052:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	441154	441430	.	+	0	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=CDS:HG003_chrY_T0000052:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	441154	441156	.	+	0	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=start_codon:HG003_chrY_T0000052;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	441431	444874	.	+	.	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=intron:HG003_chrY_T0000052:0;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	444875	445083	.	+	.	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=exon:HG003_chrY_T0000052:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	444875	445083	.	+	2	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=CDS:HG003_chrY_T0000052:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	445084	450906	.	+	.	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=intron:HG003_chrY_T0000052:1;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	450907	450964	.	+	.	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=exon:HG003_chrY_T0000052:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	450907	450964	.	+	0	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=CDS:HG003_chrY_T0000052:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	450965	451084	.	+	.	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=intron:HG003_chrY_T0000052:2;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	451085	451173	.	+	.	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=exon:HG003_chrY_T0000052:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	451085	451173	.	+	2	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=CDS:HG003_chrY_T0000052:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	451174	468214	.	+	.	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=intron:HG003_chrY_T0000052:3;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	468215	468841	.	+	.	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=exon:HG003_chrY_T0000052:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	468215	468259	.	+	0	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=CDS:HG003_chrY_T0000052:4;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	468257	468259	.	+	0	source_transcript=ENST00000711141.1;source_transcript_name=SHOX-205;source_gene=ENSG00000292354.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292354.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711141.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHOX;alternative_source_transcripts=ENST00000711141.1,ENST00000711141.1;transcript_id=HG003_chrY_T0000052;gene_id=HG003_chrY_G0000013;Parent=HG003_chrY_T0000052;transcript_name=HG003_chrY_T0000052;gene_name=SHOX;ID=stop_codon:HG003_chrY_T0000052;Name=SHOX;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	773124	774067	.	-	.	source_gene_common_name=ENSG00000310541;source_gene=ENSG00000310541.1;alternative_source_transcripts=ENST00000850692.1,ENST00000850692.1;gene_id=HG003_chrY_G0000014;gene_biotype=lncRNA;gene_name=ENSG00000310541;gene_sources=liftoff;ID=HG003_chrY_G0000014;Name=ENSG00000310541
HG003_chrY	CAT	transcript	773124	774067	1000	-	.	source_transcript=ENST00000850692.1;source_transcript_name=ENST00000850692;source_gene=ENSG00000310541.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310541.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850692.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850692.1;transcript_score=298.592;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310541;alternative_source_transcripts=ENST00000850692.1,ENST00000850692.1;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_G0000014;transcript_name=HG003_chrY_T0000053;gene_name=ENSG00000310541;ID=HG003_chrY_T0000053;Name=ENSG00000310541
HG003_chrY	CAT	exon	773124	773452	.	-	.	source_transcript=ENST00000850692.1;source_transcript_name=ENST00000850692;source_gene=ENSG00000310541.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310541.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850692.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850692.1;transcript_score=298.592;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310541;alternative_source_transcripts=ENST00000850692.1,ENST00000850692.1;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000053;transcript_name=HG003_chrY_T0000053;gene_name=ENSG00000310541;ID=exon:HG003_chrY_T0000053:0;Name=ENSG00000310541;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	773453	773970	.	-	.	source_transcript=ENST00000850692.1;source_transcript_name=ENST00000850692;source_gene=ENSG00000310541.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310541.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850692.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850692.1;transcript_score=298.592;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310541;alternative_source_transcripts=ENST00000850692.1,ENST00000850692.1;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000053;transcript_name=HG003_chrY_T0000053;gene_name=ENSG00000310541;ID=intron:HG003_chrY_T0000053:0;Name=ENSG00000310541;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	773971	774067	.	-	.	source_transcript=ENST00000850692.1;source_transcript_name=ENST00000850692;source_gene=ENSG00000310541.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310541.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850692.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850692.1;transcript_score=298.592;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310541;alternative_source_transcripts=ENST00000850692.1,ENST00000850692.1;transcript_id=HG003_chrY_T0000053;gene_id=HG003_chrY_G0000014;Parent=HG003_chrY_T0000053;transcript_name=HG003_chrY_T0000053;gene_name=ENSG00000310541;ID=exon:HG003_chrY_T0000053:1;Name=ENSG00000310541;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	798322	802516	.	+	.	source_gene_common_name=ENSG00000292335;source_gene=ENSG00000292335.2;alternative_source_transcripts=ENST00000850729.1,ENST00000850729.1;gene_id=HG003_chrY_G0000015;gene_biotype=lncRNA;gene_name=ENSG00000292335;gene_sources=liftoff;ID=HG003_chrY_G0000015;Name=ENSG00000292335
HG003_chrY	CAT	transcript	798322	802508	1000	+	.	source_transcript=ENST00000850729.1;source_transcript_name=ENST00000850729;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850729.1;transcript_score=299.486;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850729.1,ENST00000850729.1;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_G0000015;transcript_name=HG003_chrY_T0000054;gene_name=ENSG00000292335;ID=HG003_chrY_T0000054;Name=ENSG00000292335
HG003_chrY	CAT	exon	798322	798653	.	+	.	source_transcript=ENST00000850729.1;source_transcript_name=ENST00000850729;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850729.1;transcript_score=299.486;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850729.1,ENST00000850729.1;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000054;transcript_name=HG003_chrY_T0000054;gene_name=ENSG00000292335;ID=exon:HG003_chrY_T0000054:0;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	798654	801507	.	+	.	source_transcript=ENST00000850729.1;source_transcript_name=ENST00000850729;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850729.1;transcript_score=299.486;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850729.1,ENST00000850729.1;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000054;transcript_name=HG003_chrY_T0000054;gene_name=ENSG00000292335;ID=intron:HG003_chrY_T0000054:0;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	801508	801571	.	+	.	source_transcript=ENST00000850729.1;source_transcript_name=ENST00000850729;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850729.1;transcript_score=299.486;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850729.1,ENST00000850729.1;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000054;transcript_name=HG003_chrY_T0000054;gene_name=ENSG00000292335;ID=exon:HG003_chrY_T0000054:1;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	801572	802126	.	+	.	source_transcript=ENST00000850729.1;source_transcript_name=ENST00000850729;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850729.1;transcript_score=299.486;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850729.1,ENST00000850729.1;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000054;transcript_name=HG003_chrY_T0000054;gene_name=ENSG00000292335;ID=intron:HG003_chrY_T0000054:1;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	802127	802508	.	+	.	source_transcript=ENST00000850729.1;source_transcript_name=ENST00000850729;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850729.1;transcript_score=299.486;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850729.1,ENST00000850729.1;transcript_id=HG003_chrY_T0000054;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000054;transcript_name=HG003_chrY_T0000054;gene_name=ENSG00000292335;ID=exon:HG003_chrY_T0000054:2;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	798367	802508	1000	+	.	source_transcript=ENST00000850730.1;source_transcript_name=ENST00000850730;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850730.1;transcript_score=299.552;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850730.1,ENST00000850730.1;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_G0000015;transcript_name=HG003_chrY_T0000055;gene_name=ENSG00000292335;ID=HG003_chrY_T0000055;Name=ENSG00000292335
HG003_chrY	CAT	exon	798367	798653	.	+	.	source_transcript=ENST00000850730.1;source_transcript_name=ENST00000850730;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850730.1;transcript_score=299.552;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850730.1,ENST00000850730.1;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000055;transcript_name=HG003_chrY_T0000055;gene_name=ENSG00000292335;ID=exon:HG003_chrY_T0000055:0;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	798654	802126	.	+	.	source_transcript=ENST00000850730.1;source_transcript_name=ENST00000850730;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850730.1;transcript_score=299.552;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850730.1,ENST00000850730.1;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000055;transcript_name=HG003_chrY_T0000055;gene_name=ENSG00000292335;ID=intron:HG003_chrY_T0000055:0;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	802127	802508	.	+	.	source_transcript=ENST00000850730.1;source_transcript_name=ENST00000850730;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850730.1;transcript_score=299.552;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850730.1,ENST00000850730.1;transcript_id=HG003_chrY_T0000055;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000055;transcript_name=HG003_chrY_T0000055;gene_name=ENSG00000292335;ID=exon:HG003_chrY_T0000055:1;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	798402	802508	1000	+	.	source_transcript=ENST00000850731.1;source_transcript_name=ENST00000850731;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850731.1;transcript_score=299.567;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850731.1,ENST00000850731.1;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_G0000015;transcript_name=HG003_chrY_T0000056;gene_name=ENSG00000292335;ID=HG003_chrY_T0000056;Name=ENSG00000292335
HG003_chrY	CAT	exon	798402	798648	.	+	.	source_transcript=ENST00000850731.1;source_transcript_name=ENST00000850731;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850731.1;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850731.1,ENST00000850731.1;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000056;transcript_name=HG003_chrY_T0000056;gene_name=ENSG00000292335;ID=exon:HG003_chrY_T0000056:0;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	798649	801507	.	+	.	source_transcript=ENST00000850731.1;source_transcript_name=ENST00000850731;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850731.1;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850731.1,ENST00000850731.1;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000056;transcript_name=HG003_chrY_T0000056;gene_name=ENSG00000292335;ID=intron:HG003_chrY_T0000056:0;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	801508	801571	.	+	.	source_transcript=ENST00000850731.1;source_transcript_name=ENST00000850731;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850731.1;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850731.1,ENST00000850731.1;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000056;transcript_name=HG003_chrY_T0000056;gene_name=ENSG00000292335;ID=exon:HG003_chrY_T0000056:1;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	801572	802126	.	+	.	source_transcript=ENST00000850731.1;source_transcript_name=ENST00000850731;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850731.1;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850731.1,ENST00000850731.1;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000056;transcript_name=HG003_chrY_T0000056;gene_name=ENSG00000292335;ID=intron:HG003_chrY_T0000056:1;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	802127	802508	.	+	.	source_transcript=ENST00000850731.1;source_transcript_name=ENST00000850731;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850731.1;transcript_score=299.567;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850731.1,ENST00000850731.1;transcript_id=HG003_chrY_T0000056;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000056;transcript_name=HG003_chrY_T0000056;gene_name=ENSG00000292335;ID=exon:HG003_chrY_T0000056:2;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	798417	802516	1000	+	.	source_transcript=ENST00000850826.1;source_transcript_name=ENST00000850826;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850826.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850826.1;transcript_score=299.51800000000003;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850826.1,ENST00000850826.1;transcript_id=HG003_chrY_T0000057;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_G0000015;transcript_name=HG003_chrY_T0000057;gene_name=ENSG00000292335;ID=HG003_chrY_T0000057;Name=ENSG00000292335
HG003_chrY	CAT	exon	798417	798648	.	+	.	source_transcript=ENST00000850826.1;source_transcript_name=ENST00000850826;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850826.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850826.1;transcript_score=299.51800000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850826.1,ENST00000850826.1;transcript_id=HG003_chrY_T0000057;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000057;transcript_name=HG003_chrY_T0000057;gene_name=ENSG00000292335;ID=exon:HG003_chrY_T0000057:0;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	798649	802126	.	+	.	source_transcript=ENST00000850826.1;source_transcript_name=ENST00000850826;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850826.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850826.1;transcript_score=299.51800000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850826.1,ENST00000850826.1;transcript_id=HG003_chrY_T0000057;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000057;transcript_name=HG003_chrY_T0000057;gene_name=ENSG00000292335;ID=intron:HG003_chrY_T0000057:0;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	802127	802516	.	+	.	source_transcript=ENST00000850826.1;source_transcript_name=ENST00000850826;source_gene=ENSG00000292335.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292335.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850826.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850826.1;transcript_score=299.51800000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292335;alternative_source_transcripts=ENST00000850826.1,ENST00000850826.1;transcript_id=HG003_chrY_T0000057;gene_id=HG003_chrY_G0000015;Parent=HG003_chrY_T0000057;transcript_name=HG003_chrY_T0000057;gene_name=ENSG00000292335;ID=exon:HG003_chrY_T0000057:1;Name=ENSG00000292335;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	816636	818234	.	-	.	source_gene_common_name=RPL14P5;source_gene=ENSG00000292328.1;alternative_source_transcripts=ENST00000711122.1,ENST00000711122.1;gene_id=HG003_chrY_G0000016;gene_biotype=processed_pseudogene;gene_name=RPL14P5;gene_sources=liftoff;ID=HG003_chrY_G0000016;Name=RPL14P5
HG003_chrY	CAT	transcript	816636	818234	1000	-	.	source_transcript=ENST00000711122.1;source_transcript_name=RPL14P5-202;source_gene=ENSG00000292328.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292328.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711122.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711122.1;transcript_score=299.863;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPL14P5;alternative_source_transcripts=ENST00000711122.1,ENST00000711122.1;transcript_id=HG003_chrY_T0000058;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_G0000016;transcript_name=HG003_chrY_T0000058;gene_name=RPL14P5;ID=HG003_chrY_T0000058;Name=RPL14P5
HG003_chrY	CAT	exon	816636	816684	.	-	.	source_transcript=ENST00000711122.1;source_transcript_name=RPL14P5-202;source_gene=ENSG00000292328.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292328.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711122.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711122.1;transcript_score=299.863;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPL14P5;alternative_source_transcripts=ENST00000711122.1,ENST00000711122.1;transcript_id=HG003_chrY_T0000058;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000058;transcript_name=HG003_chrY_T0000058;gene_name=RPL14P5;ID=exon:HG003_chrY_T0000058:0;Name=RPL14P5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	816685	817224	.	-	.	source_transcript=ENST00000711122.1;source_transcript_name=RPL14P5-202;source_gene=ENSG00000292328.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292328.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711122.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711122.1;transcript_score=299.863;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPL14P5;alternative_source_transcripts=ENST00000711122.1,ENST00000711122.1;transcript_id=HG003_chrY_T0000058;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000058;transcript_name=HG003_chrY_T0000058;gene_name=RPL14P5;ID=intron:HG003_chrY_T0000058:0;Name=RPL14P5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	817225	817513	.	-	.	source_transcript=ENST00000711122.1;source_transcript_name=RPL14P5-202;source_gene=ENSG00000292328.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292328.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711122.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711122.1;transcript_score=299.863;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPL14P5;alternative_source_transcripts=ENST00000711122.1,ENST00000711122.1;transcript_id=HG003_chrY_T0000058;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000058;transcript_name=HG003_chrY_T0000058;gene_name=RPL14P5;ID=exon:HG003_chrY_T0000058:1;Name=RPL14P5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	817514	817842	.	-	.	source_transcript=ENST00000711122.1;source_transcript_name=RPL14P5-202;source_gene=ENSG00000292328.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292328.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711122.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711122.1;transcript_score=299.863;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPL14P5;alternative_source_transcripts=ENST00000711122.1,ENST00000711122.1;transcript_id=HG003_chrY_T0000058;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000058;transcript_name=HG003_chrY_T0000058;gene_name=RPL14P5;ID=intron:HG003_chrY_T0000058:1;Name=RPL14P5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	817843	818234	.	-	.	source_transcript=ENST00000711122.1;source_transcript_name=RPL14P5-202;source_gene=ENSG00000292328.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292328.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711122.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711122.1;transcript_score=299.863;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPL14P5;alternative_source_transcripts=ENST00000711122.1,ENST00000711122.1;transcript_id=HG003_chrY_T0000058;gene_id=HG003_chrY_G0000016;Parent=HG003_chrY_T0000058;transcript_name=HG003_chrY_T0000058;gene_name=RPL14P5;ID=exon:HG003_chrY_T0000058:2;Name=RPL14P5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	923552	924535	.	+	.	source_gene_common_name=ENSG00000310548;source_gene=ENSG00000310548.1;alternative_source_transcripts=ENST00000850715.1,ENST00000850715.1;gene_id=HG003_chrY_G0000017;gene_biotype=lncRNA;gene_name=ENSG00000310548;gene_sources=liftoff;ID=HG003_chrY_G0000017;Name=ENSG00000310548
HG003_chrY	CAT	transcript	923552	924535	1000	+	.	source_transcript=ENST00000850715.1;source_transcript_name=ENST00000850715;source_gene=ENSG00000310548.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310548.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850715.1;transcript_score=299.76300000000003;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310548;alternative_source_transcripts=ENST00000850715.1,ENST00000850715.1;transcript_id=HG003_chrY_T0000059;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_G0000017;transcript_name=HG003_chrY_T0000059;gene_name=ENSG00000310548;ID=HG003_chrY_T0000059;Name=ENSG00000310548
HG003_chrY	CAT	exon	923552	923677	.	+	.	source_transcript=ENST00000850715.1;source_transcript_name=ENST00000850715;source_gene=ENSG00000310548.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310548.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850715.1;transcript_score=299.76300000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310548;alternative_source_transcripts=ENST00000850715.1,ENST00000850715.1;transcript_id=HG003_chrY_T0000059;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000059;transcript_name=HG003_chrY_T0000059;gene_name=ENSG00000310548;ID=exon:HG003_chrY_T0000059:0;Name=ENSG00000310548;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	923678	923811	.	+	.	source_transcript=ENST00000850715.1;source_transcript_name=ENST00000850715;source_gene=ENSG00000310548.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310548.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850715.1;transcript_score=299.76300000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310548;alternative_source_transcripts=ENST00000850715.1,ENST00000850715.1;transcript_id=HG003_chrY_T0000059;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000059;transcript_name=HG003_chrY_T0000059;gene_name=ENSG00000310548;ID=intron:HG003_chrY_T0000059:0;Name=ENSG00000310548;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	923812	924535	.	+	.	source_transcript=ENST00000850715.1;source_transcript_name=ENST00000850715;source_gene=ENSG00000310548.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310548.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850715.1;transcript_score=299.76300000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310548;alternative_source_transcripts=ENST00000850715.1,ENST00000850715.1;transcript_id=HG003_chrY_T0000059;gene_id=HG003_chrY_G0000017;Parent=HG003_chrY_T0000059;transcript_name=HG003_chrY_T0000059;gene_name=ENSG00000310548;ID=exon:HG003_chrY_T0000059:1;Name=ENSG00000310548;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	984342	994014	.	+	.	source_gene_common_name=ENSG00000310556;source_gene=ENSG00000310556.1;alternative_source_transcripts=ENST00000850736.1,ENST00000850736.1;gene_id=HG003_chrY_G0000018;gene_biotype=lncRNA;gene_name=ENSG00000310556;gene_sources=liftoff;ID=HG003_chrY_G0000018;Name=ENSG00000310556
HG003_chrY	CAT	transcript	984342	988669	1000	+	.	source_transcript=ENST00000850736.1;source_transcript_name=ENST00000850736;source_gene=ENSG00000310556.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310556.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850736.1;transcript_score=299.616;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310556;alternative_source_transcripts=ENST00000850736.1,ENST00000850736.1;transcript_id=HG003_chrY_T0000060;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_G0000018;transcript_name=HG003_chrY_T0000060;gene_name=ENSG00000310556;ID=HG003_chrY_T0000060;Name=ENSG00000310556
HG003_chrY	CAT	exon	984342	984428	.	+	.	source_transcript=ENST00000850736.1;source_transcript_name=ENST00000850736;source_gene=ENSG00000310556.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310556.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850736.1;transcript_score=299.616;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310556;alternative_source_transcripts=ENST00000850736.1,ENST00000850736.1;transcript_id=HG003_chrY_T0000060;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000060;transcript_name=HG003_chrY_T0000060;gene_name=ENSG00000310556;ID=exon:HG003_chrY_T0000060:0;Name=ENSG00000310556;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	984429	987713	.	+	.	source_transcript=ENST00000850736.1;source_transcript_name=ENST00000850736;source_gene=ENSG00000310556.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310556.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850736.1;transcript_score=299.616;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310556;alternative_source_transcripts=ENST00000850736.1,ENST00000850736.1;transcript_id=HG003_chrY_T0000060;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000060;transcript_name=HG003_chrY_T0000060;gene_name=ENSG00000310556;ID=intron:HG003_chrY_T0000060:0;Name=ENSG00000310556;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	987714	988669	.	+	.	source_transcript=ENST00000850736.1;source_transcript_name=ENST00000850736;source_gene=ENSG00000310556.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310556.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850736.1;transcript_score=299.616;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310556;alternative_source_transcripts=ENST00000850736.1,ENST00000850736.1;transcript_id=HG003_chrY_T0000060;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000060;transcript_name=HG003_chrY_T0000060;gene_name=ENSG00000310556;ID=exon:HG003_chrY_T0000060:1;Name=ENSG00000310556;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	984370	994014	1000	+	.	source_transcript=ENST00000850735.1;source_transcript_name=ENST00000850735;source_gene=ENSG00000310556.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310556.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850735.1;transcript_score=299.848;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310556;alternative_source_transcripts=ENST00000850735.1,ENST00000850735.1;transcript_id=HG003_chrY_T0000061;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_G0000018;transcript_name=HG003_chrY_T0000061;gene_name=ENSG00000310556;ID=HG003_chrY_T0000061;Name=ENSG00000310556
HG003_chrY	CAT	exon	984370	984428	.	+	.	source_transcript=ENST00000850735.1;source_transcript_name=ENST00000850735;source_gene=ENSG00000310556.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310556.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850735.1;transcript_score=299.848;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310556;alternative_source_transcripts=ENST00000850735.1,ENST00000850735.1;transcript_id=HG003_chrY_T0000061;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000061;transcript_name=HG003_chrY_T0000061;gene_name=ENSG00000310556;ID=exon:HG003_chrY_T0000061:0;Name=ENSG00000310556;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	984429	987713	.	+	.	source_transcript=ENST00000850735.1;source_transcript_name=ENST00000850735;source_gene=ENSG00000310556.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310556.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850735.1;transcript_score=299.848;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310556;alternative_source_transcripts=ENST00000850735.1,ENST00000850735.1;transcript_id=HG003_chrY_T0000061;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000061;transcript_name=HG003_chrY_T0000061;gene_name=ENSG00000310556;ID=intron:HG003_chrY_T0000061:0;Name=ENSG00000310556;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	987714	988049	.	+	.	source_transcript=ENST00000850735.1;source_transcript_name=ENST00000850735;source_gene=ENSG00000310556.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310556.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850735.1;transcript_score=299.848;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310556;alternative_source_transcripts=ENST00000850735.1,ENST00000850735.1;transcript_id=HG003_chrY_T0000061;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000061;transcript_name=HG003_chrY_T0000061;gene_name=ENSG00000310556;ID=exon:HG003_chrY_T0000061:1;Name=ENSG00000310556;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	988050	993751	.	+	.	source_transcript=ENST00000850735.1;source_transcript_name=ENST00000850735;source_gene=ENSG00000310556.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310556.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850735.1;transcript_score=299.848;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310556;alternative_source_transcripts=ENST00000850735.1,ENST00000850735.1;transcript_id=HG003_chrY_T0000061;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000061;transcript_name=HG003_chrY_T0000061;gene_name=ENSG00000310556;ID=intron:HG003_chrY_T0000061:1;Name=ENSG00000310556;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	993752	994014	.	+	.	source_transcript=ENST00000850735.1;source_transcript_name=ENST00000850735;source_gene=ENSG00000310556.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310556.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850735.1;transcript_score=299.848;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310556;alternative_source_transcripts=ENST00000850735.1,ENST00000850735.1;transcript_id=HG003_chrY_T0000061;gene_id=HG003_chrY_G0000018;Parent=HG003_chrY_T0000061;transcript_name=HG003_chrY_T0000061;gene_name=ENSG00000310556;ID=exon:HG003_chrY_T0000061:2;Name=ENSG00000310556;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1004982	1027303	.	-	.	source_gene_common_name=CRLF2;source_gene=ENSG00000292363.1;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;gene_id=HG003_chrY_G0000019;gene_biotype=protein_coding;gene_name=CRLF2;gene_sources=liftoff;ID=HG003_chrY_G0000019;Name=CRLF2
HG003_chrY	CAT	transcript	1004982	1027229	100	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_G0000019;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=HG003_chrY_T0000062;Name=CRLF2
HG003_chrY	CAT	exon	1004982	1005652	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=exon:HG003_chrY_T0000062:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1005389	1005652	.	-	0	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000062:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1005389	1005391	.	-	0	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=stop_codon:HG003_chrY_T0000062;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1005653	1007721	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=intron:HG003_chrY_T0000062:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1007722	1007806	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=exon:HG003_chrY_T0000062:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1007722	1007806	.	-	1	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000062:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1007807	1011285	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=intron:HG003_chrY_T0000062:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1011286	1011406	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=exon:HG003_chrY_T0000062:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1011286	1011406	.	-	2	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000062:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1011407	1013102	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=intron:HG003_chrY_T0000062:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1013103	1013265	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=exon:HG003_chrY_T0000062:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1013103	1013265	.	-	0	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000062:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1013266	1016951	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=intron:HG003_chrY_T0000062:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1016952	1017085	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=exon:HG003_chrY_T0000062:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1016952	1017085	.	-	2	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000062:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1017086	1021007	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=intron:HG003_chrY_T0000062:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1021008	1021174	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=exon:HG003_chrY_T0000062:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1021008	1021174	.	-	1	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000062:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1021175	1023377	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=intron:HG003_chrY_T0000062:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1023378	1023480	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=exon:HG003_chrY_T0000062:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1023378	1023480	.	-	2	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000062:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1023481	1027135	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=intron:HG003_chrY_T0000062:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1027136	1027229	.	-	.	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=exon:HG003_chrY_T0000062:7;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1027136	1027214	.	-	0	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000062:7;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1027212	1027214	.	-	0	source_transcript=ENST00000711254.1;source_transcript_name=CRLF2-204;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711254.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711254.1,ENST00000711254.1;transcript_id=HG003_chrY_T0000062;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000062;transcript_name=HG003_chrY_T0000062;gene_name=CRLF2;ID=start_codon:HG003_chrY_T0000062;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1004984	1027303	1000	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_G0000019;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=HG003_chrY_T0000063;Name=CRLF2
HG003_chrY	CAT	exon	1004984	1005652	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=exon:HG003_chrY_T0000063:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1005653	1007721	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=intron:HG003_chrY_T0000063:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1007722	1007806	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=exon:HG003_chrY_T0000063:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1007807	1011285	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=intron:HG003_chrY_T0000063:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1011286	1011406	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=exon:HG003_chrY_T0000063:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1011407	1013343	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=intron:HG003_chrY_T0000063:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1013344	1013688	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=exon:HG003_chrY_T0000063:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1013470	1013688	.	-	0	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000063:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1013470	1013472	.	-	0	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=stop_codon:HG003_chrY_T0000063;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1013689	1016951	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=intron:HG003_chrY_T0000063:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1016952	1017085	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=exon:HG003_chrY_T0000063:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1016952	1017085	.	-	2	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000063:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1017086	1021007	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=intron:HG003_chrY_T0000063:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1021008	1021174	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=exon:HG003_chrY_T0000063:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1021008	1021174	.	-	1	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000063:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1021175	1023377	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=intron:HG003_chrY_T0000063:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1023378	1023477	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=exon:HG003_chrY_T0000063:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1023378	1023477	.	-	2	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000063:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1023478	1027135	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=intron:HG003_chrY_T0000063:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1027136	1027303	.	-	.	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=exon:HG003_chrY_T0000063:7;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1027136	1027214	.	-	0	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000063:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1027212	1027214	.	-	0	source_transcript=ENST00000711255.1;source_transcript_name=CRLF2-205;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711255.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711255.1;transcript_score=299.721;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711255.1,ENST00000711255.1;transcript_id=HG003_chrY_T0000063;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000063;transcript_name=HG003_chrY_T0000063;gene_name=CRLF2;ID=start_codon:HG003_chrY_T0000063;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1005389	1027214	100	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_G0000019;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=HG003_chrY_T0000064;Name=CRLF2
HG003_chrY	CAT	exon	1005389	1005652	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=exon:HG003_chrY_T0000064:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1005389	1005652	.	-	0	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000064:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1005389	1005391	.	-	0	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=stop_codon:HG003_chrY_T0000064;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1005653	1007721	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=intron:HG003_chrY_T0000064:0;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1007722	1007806	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=exon:HG003_chrY_T0000064:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1007722	1007806	.	-	1	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000064:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1007807	1011285	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=intron:HG003_chrY_T0000064:1;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1011286	1011406	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=exon:HG003_chrY_T0000064:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1011286	1011406	.	-	2	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000064:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1011407	1013102	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=intron:HG003_chrY_T0000064:2;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1013103	1013265	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=exon:HG003_chrY_T0000064:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1013103	1013265	.	-	0	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000064:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1013266	1016951	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=intron:HG003_chrY_T0000064:3;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1016952	1017085	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=exon:HG003_chrY_T0000064:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1016952	1017085	.	-	2	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000064:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1017086	1021007	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=intron:HG003_chrY_T0000064:4;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1021008	1021174	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=exon:HG003_chrY_T0000064:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1021008	1021020	.	-	0	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=CDS:HG003_chrY_T0000064:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1021018	1021020	.	-	0	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=start_codon:HG003_chrY_T0000064;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1021175	1027135	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=intron:HG003_chrY_T0000064:5;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1027136	1027214	.	-	.	source_transcript=ENST00000711256.1;source_transcript_name=CRLF2-206;source_gene=ENSG00000292363.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292363.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711256.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711256.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CRLF2;alternative_source_transcripts=ENST00000711256.1,ENST00000711256.1;transcript_id=HG003_chrY_T0000064;gene_id=HG003_chrY_G0000019;Parent=HG003_chrY_T0000064;transcript_name=HG003_chrY_T0000064;gene_name=CRLF2;ID=exon:HG003_chrY_T0000064:6;Name=CRLF2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1063210	1064212	.	-	.	source_gene_common_name=ENSG00000310545;source_gene=ENSG00000310545.1;alternative_source_transcripts=ENST00000850707.1,ENST00000850707.1;gene_id=HG003_chrY_G0000020;gene_biotype=lncRNA;gene_name=ENSG00000310545;gene_sources=liftoff;ID=HG003_chrY_G0000020;Name=ENSG00000310545
HG003_chrY	CAT	transcript	1063210	1064212	1000	-	.	source_transcript=ENST00000850707.1;source_transcript_name=ENST00000850707;source_gene=ENSG00000310545.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310545.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850707.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310545;alternative_source_transcripts=ENST00000850707.1,ENST00000850707.1;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_G0000020;transcript_name=HG003_chrY_T0000065;gene_name=ENSG00000310545;ID=HG003_chrY_T0000065;Name=ENSG00000310545
HG003_chrY	CAT	exon	1063210	1064212	.	-	.	source_transcript=ENST00000850707.1;source_transcript_name=ENST00000850707;source_gene=ENSG00000310545.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310545.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850707.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310545;alternative_source_transcripts=ENST00000850707.1,ENST00000850707.1;transcript_id=HG003_chrY_T0000065;gene_id=HG003_chrY_G0000020;Parent=HG003_chrY_T0000065;transcript_name=HG003_chrY_T0000065;gene_name=ENSG00000310545;ID=exon:HG003_chrY_T0000065:0;Name=ENSG00000310545;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1063232	1078752	.	+	.	source_gene_common_name=ENSG00000310544;source_gene=ENSG00000310544.1;gene_id=HG003_chrY_G0000021;gene_biotype=lncRNA;gene_name=ENSG00000310544;gene_sources=liftoff,transMap,transMap_pairwise;ID=HG003_chrY_G0000021;Name=ENSG00000310544
HG003_chrY	CAT	transcript	1063232	1078752	1000	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=transMap;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_G0000021;transcript_name=HG003_chrY_T0000066;gene_name=ENSG00000310544;ID=HG003_chrY_T0000066;Name=ENSG00000310544
HG003_chrY	CAT	exon	1063232	1064166	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=transMap;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000066;transcript_name=HG003_chrY_T0000066;gene_name=ENSG00000310544;ID=exon:HG003_chrY_T0000066:0;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1064167	1077240	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=transMap;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000066;transcript_name=HG003_chrY_T0000066;gene_name=ENSG00000310544;ID=intron:HG003_chrY_T0000066:0;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1077241	1077311	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=transMap;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000066;transcript_name=HG003_chrY_T0000066;gene_name=ENSG00000310544;ID=exon:HG003_chrY_T0000066:1;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1077312	1077909	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=transMap;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000066;transcript_name=HG003_chrY_T0000066;gene_name=ENSG00000310544;ID=intron:HG003_chrY_T0000066:1;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1077910	1078752	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=transMap;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000066;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000066;transcript_name=HG003_chrY_T0000066;gene_name=ENSG00000310544;ID=exon:HG003_chrY_T0000066:2;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1063232	1078752	1000	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_G0000021;transcript_name=HG003_chrY_T0000067;gene_name=ENSG00000310544;ID=HG003_chrY_T0000067;Name=ENSG00000310544
HG003_chrY	CAT	exon	1063232	1064166	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000067;transcript_name=HG003_chrY_T0000067;gene_name=ENSG00000310544;ID=exon:HG003_chrY_T0000067:0;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1064167	1077240	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000067;transcript_name=HG003_chrY_T0000067;gene_name=ENSG00000310544;ID=intron:HG003_chrY_T0000067:0;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1077241	1077287	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000067;transcript_name=HG003_chrY_T0000067;gene_name=ENSG00000310544;ID=exon:HG003_chrY_T0000067:1;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1077288	1077885	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000067;transcript_name=HG003_chrY_T0000067;gene_name=ENSG00000310544;ID=intron:HG003_chrY_T0000067:1;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1077886	1078752	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000067;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000067;transcript_name=HG003_chrY_T0000067;gene_name=ENSG00000310544;ID=exon:HG003_chrY_T0000067:2;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1063232	1078752	1000	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_G0000021;transcript_name=HG003_chrY_T0000068;gene_name=ENSG00000310544;ID=HG003_chrY_T0000068;Name=ENSG00000310544
HG003_chrY	CAT	exon	1063232	1064166	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000068;transcript_name=HG003_chrY_T0000068;gene_name=ENSG00000310544;ID=exon:HG003_chrY_T0000068:0;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1064167	1077240	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000068;transcript_name=HG003_chrY_T0000068;gene_name=ENSG00000310544;ID=intron:HG003_chrY_T0000068:0;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1077241	1078752	.	+	.	source_transcript=ENST00000850705.1;source_transcript_name=ENST00000850705;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850705.1;transcript_score=249.621;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;transcript_id=HG003_chrY_T0000068;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000068;transcript_name=HG003_chrY_T0000068;gene_name=ENSG00000310544;ID=exon:HG003_chrY_T0000068:1;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1064038	1069810	1000	+	.	source_transcript=ENST00000850706.1;source_transcript_name=ENST00000850706;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850706.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;alternative_source_transcripts=ENST00000850706.1,ENST00000850706.1;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_G0000021;transcript_name=HG003_chrY_T0000069;gene_name=ENSG00000310544;ID=HG003_chrY_T0000069;Name=ENSG00000310544
HG003_chrY	CAT	exon	1064038	1064166	.	+	.	source_transcript=ENST00000850706.1;source_transcript_name=ENST00000850706;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850706.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;alternative_source_transcripts=ENST00000850706.1,ENST00000850706.1;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000069;transcript_name=HG003_chrY_T0000069;gene_name=ENSG00000310544;ID=exon:HG003_chrY_T0000069:0;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1064167	1069545	.	+	.	source_transcript=ENST00000850706.1;source_transcript_name=ENST00000850706;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850706.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;alternative_source_transcripts=ENST00000850706.1,ENST00000850706.1;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000069;transcript_name=HG003_chrY_T0000069;gene_name=ENSG00000310544;ID=intron:HG003_chrY_T0000069:0;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1069546	1069810	.	+	.	source_transcript=ENST00000850706.1;source_transcript_name=ENST00000850706;source_gene=ENSG00000310544.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310544.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850706.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310544;alternative_source_transcripts=ENST00000850706.1,ENST00000850706.1;transcript_id=HG003_chrY_T0000069;gene_id=HG003_chrY_G0000021;Parent=HG003_chrY_T0000069;transcript_name=HG003_chrY_T0000069;gene_name=ENSG00000310544;ID=exon:HG003_chrY_T0000069:1;Name=ENSG00000310544;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1083945	1143942	.	+	.	source_gene_common_name=CSF2RA;source_gene=ENSG00000292357.2;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;gene_id=HG003_chrY_G0000022;gene_biotype=protein_coding;gene_name=CSF2RA;gene_sources=liftoff,transMap_pairwise;ID=HG003_chrY_G0000022;Name=CSF2RA
HG003_chrY	CAT	transcript	1083945	1143942	100	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=HG003_chrY_T0000070;Name=CSF2RA
HG003_chrY	CAT	exon	1083945	1084031	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000070:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000070:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000070:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000070;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000070:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000070:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000070:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000070:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000070:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000070:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000070:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000070:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000070:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000070:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000070:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000070:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000070:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000070:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000070:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000070:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000070:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000070:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1143596	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000070:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1143597	1143942	.	+	.	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000070:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1143597	1143632	.	+	0	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000070:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1143630	1143632	.	+	0	source_transcript=ENST00000850688.1;source_transcript_name=CSF2RA-241;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850688.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850688.1,ENST00000850688.1;transcript_id=HG003_chrY_T0000070;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000070;transcript_name=HG003_chrY_T0000070;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000070;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083952	1128725	100	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=HG003_chrY_T0000071;Name=CSF2RA
HG003_chrY	CAT	exon	1083952	1084031	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000071:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000071;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000071:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000071:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000071:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000071:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000071:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000071:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000071:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1121696	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1121697	1121798	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1121697	1121798	.	+	2	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000071:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1121799	1122358	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000071:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000071:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000071:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128725	.	+	.	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000071:13;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000071:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=ENST00000711138.1;source_transcript_name=CSF2RA-229;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711138.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711138.1,ENST00000711138.1;transcript_id=HG003_chrY_T0000071;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000071;transcript_name=HG003_chrY_T0000071;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000071;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083960	1129172	100	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=HG003_chrY_T0000072;Name=CSF2RA
HG003_chrY	CAT	exon	1083960	1084031	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000072:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000072:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000072:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000072;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000072:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000072:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000072:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000072:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000072:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000072:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000072:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000072:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000072:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000072:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000072:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000072:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000072:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000072:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000072:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000072:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000072:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000072:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000072:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1129172	.	+	.	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000072:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000072:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=ENST00000711137.1;source_transcript_name=CSF2RA-228;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711137.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711137.1,ENST00000711137.1;transcript_id=HG003_chrY_T0000072;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000072;transcript_name=HG003_chrY_T0000072;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000072;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128726	100	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=HG003_chrY_T0000073;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000073:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099694	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000073:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000073:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000073;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000073:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000073:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000073:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000073:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000073:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000073:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000073:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000073:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000073:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000073:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000073:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000073:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000073:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000073:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000073:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000073:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000073:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000073:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000073:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128726	.	+	.	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000073:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000073:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=ENST00000711129.1;source_transcript_name=CSF2RA-223;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711129.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711129.1,ENST00000711129.1;transcript_id=HG003_chrY_T0000073;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000073;transcript_name=HG003_chrY_T0000073;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000073;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1128509	1000	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=HG003_chrY_T0000074;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1100059	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099900	.	+	0	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000074:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000074;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1099898	1099900	.	+	0	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000074;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1100060	1102784	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1121696	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1121697	1121798	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1121799	1122358	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000074:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128509	.	+	.	source_transcript=ENST00000711135.1;source_transcript_name=CSF2RA-226;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711135.1,ENST00000711135.1;transcript_id=HG003_chrY_T0000074;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000074;transcript_name=HG003_chrY_T0000074;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000074:13;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083966	1118978	1000	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=HG003_chrY_T0000075;Name=CSF2RA
HG003_chrY	CAT	exon	1083966	1084031	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000075:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000075:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000075:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000075:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000075:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1105517	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000075:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000075:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000075:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000075:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000075:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000075:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000075:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000075:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000075:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000075:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000075:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1118978	.	+	.	source_transcript=ENST00000711136.1;source_transcript_name=CSF2RA-227;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711136.1,ENST00000711136.1;transcript_id=HG003_chrY_T0000075;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000075;transcript_name=HG003_chrY_T0000075;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000075:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083970	1111690	100	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=HG003_chrY_T0000076;Name=CSF2RA
HG003_chrY	CAT	exon	1083970	1084031	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000076:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1099694	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000076:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000076:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000076:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000076;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000076:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000076:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000076:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000076:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000076:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000076:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000076:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000076:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000076:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000076:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000076:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000076:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000076:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111690	.	+	.	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000076:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111690	.	+	2	source_transcript=ENST00000711130.1;source_transcript_name=CSF2RA-224;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711130.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711130.1,ENST00000711130.1;transcript_id=HG003_chrY_T0000076;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000076;transcript_name=HG003_chrY_T0000076;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000076:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083970	1141744	100	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=HG003_chrY_T0000077;Name=CSF2RA
HG003_chrY	CAT	exon	1083970	1084031	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000077:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000077;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000077:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000077:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000077:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000077:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000077:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000077:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000077:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000077:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000077:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141034	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141035	1141057	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141035	1141057	.	+	0	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000077:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1141058	1141389	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000077:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141390	1141744	.	+	.	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000077:13;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141390	1141537	.	+	1	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000077:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141535	1141537	.	+	0	source_transcript=ENST00000850689.1;source_transcript_name=CSF2RA-242;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850689.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850689.1,ENST00000850689.1;transcript_id=HG003_chrY_T0000077;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000077;transcript_name=HG003_chrY_T0000077;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000077;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083982	1128715	100	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=HG003_chrY_T0000078;Name=CSF2RA
HG003_chrY	CAT	exon	1083982	1084031	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1099425	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099426	1099577	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099578	1099694	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000078:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000078;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000078:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000078:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000078:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000078:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000078:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000078:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000078:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000078:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000078:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000078:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128715	.	+	.	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000078:13;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128270	.	+	0	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000078:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128268	1128270	.	+	0	source_transcript=ENST00000711131.1;source_transcript_name=CSF2RA-225;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711131.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711131.1,ENST00000711131.1;transcript_id=HG003_chrY_T0000078;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000078;transcript_name=HG003_chrY_T0000078;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000078;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083984	1124377	100	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=HG003_chrY_T0000079;Name=CSF2RA
HG003_chrY	CAT	exon	1083984	1084031	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000079:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000079:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000079:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000079;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000079:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000079:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000079:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000079:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000079:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000079:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000079:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000079:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000079:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000079:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000079:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000079:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000079:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000079:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000079:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000079:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000079:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000079:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1124063	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000079:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1124064	1124377	.	+	.	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000079:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1124064	1124171	.	+	0	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000079:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1124169	1124171	.	+	0	source_transcript=ENST00000711220.1;source_transcript_name=CSF2RA-230;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711220.1,ENST00000711220.1;transcript_id=HG003_chrY_T0000079;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000079;transcript_name=HG003_chrY_T0000079;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000079;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083984	1128713	100	+	.	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=HG003_chrY_T0000080;Name=CSF2RA
HG003_chrY	CAT	exon	1083984	1084031	.	+	.	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000080:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000080:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000080:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000080:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000080:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000080:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000080;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000080:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000080:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000080:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1104172	.	+	.	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000080:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1104173	1104197	.	+	.	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000080:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1104173	1104197	.	+	0	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000080:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1104198	1128630	.	+	.	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000080:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128631	1128713	.	+	.	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000080:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128631	1128659	.	+	2	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000080:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128657	1128659	.	+	0	source_transcript=ENST00000711221.1;source_transcript_name=CSF2RA-231;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711221.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711221.1,ENST00000711221.1;transcript_id=HG003_chrY_T0000080;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000080;transcript_name=HG003_chrY_T0000080;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000080;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083986	1141763	100	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=HG003_chrY_T0000081;Name=CSF2RA
HG003_chrY	CAT	exon	1083986	1084031	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000081:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000081:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000081:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000081;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000081:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000081:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000081:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000081:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000081:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000081:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000081:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000081:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000081:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000081:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000081:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000081:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000081:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000081:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000081:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000081:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000081:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000081:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1141034	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000081:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1141035	1141763	.	+	.	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000081:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1141035	1141061	.	+	0	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000081:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1141059	1141061	.	+	0	source_transcript=ENST00000850690.1;source_transcript_name=CSF2RA-243;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850690.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850690.1,ENST00000850690.1;transcript_id=HG003_chrY_T0000081;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000081;transcript_name=HG003_chrY_T0000081;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000081;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083986	1143785	100	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=HG003_chrY_T0000082;Name=CSF2RA
HG003_chrY	CAT	exon	1083986	1084031	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000082:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000082:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000082:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000082;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000082:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000082:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000082:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000082:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000082:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000082:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000082:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000082:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000082:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000082:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000082:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000082:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000082:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000082:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1122358	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000082:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122455	.	+	2	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000082:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000082:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123963	.	+	1	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000082:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1143596	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000082:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1143597	1143785	.	+	.	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000082:12;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1143597	1143632	.	+	0	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000082:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1143630	1143632	.	+	0	source_transcript=ENST00000850691.1;source_transcript_name=CSF2RA-244;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850691.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000850691.1,ENST00000850691.1;transcript_id=HG003_chrY_T0000082;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000082;transcript_name=HG003_chrY_T0000082;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000082;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083987	1099237	1000	+	.	source_transcript=ENST00000711222.1;source_transcript_name=CSF2RA-232;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711222.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711222.1;transcript_score=299.56399999999996;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711222.1,ENST00000711222.1;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000083;gene_name=CSF2RA;ID=HG003_chrY_T0000083;Name=CSF2RA
HG003_chrY	CAT	exon	1083987	1084031	.	+	.	source_transcript=ENST00000711222.1;source_transcript_name=CSF2RA-232;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711222.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711222.1;transcript_score=299.56399999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711222.1,ENST00000711222.1;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000083;transcript_name=HG003_chrY_T0000083;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000083:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000711222.1;source_transcript_name=CSF2RA-232;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711222.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711222.1;transcript_score=299.56399999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711222.1,ENST00000711222.1;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000083;transcript_name=HG003_chrY_T0000083;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000083:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091798	.	+	.	source_transcript=ENST00000711222.1;source_transcript_name=CSF2RA-232;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711222.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711222.1;transcript_score=299.56399999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711222.1,ENST00000711222.1;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000083;transcript_name=HG003_chrY_T0000083;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000083:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091799	1098884	.	+	.	source_transcript=ENST00000711222.1;source_transcript_name=CSF2RA-232;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711222.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711222.1;transcript_score=299.56399999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711222.1,ENST00000711222.1;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000083;transcript_name=HG003_chrY_T0000083;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000083:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1098885	1099237	.	+	.	source_transcript=ENST00000711222.1;source_transcript_name=CSF2RA-232;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711222.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711222.1;transcript_score=299.56399999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711222.1,ENST00000711222.1;transcript_id=HG003_chrY_T0000083;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000083;transcript_name=HG003_chrY_T0000083;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000083:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083997	1128725	100	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=HG003_chrY_T0000084;Name=CSF2RA
HG003_chrY	CAT	exon	1083997	1084031	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000084:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000084:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000084:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000084:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000084:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000084:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000084;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000084:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000084:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000084:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000084:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000084:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000084:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000084:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000084:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000084:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000084:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000084:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000084:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000084:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000084:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000084:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000084:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000084:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000084:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000084:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000084:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000084:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1128192	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000084:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128725	.	+	.	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000084:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1128193	1128380	.	+	2	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000084:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1128378	1128380	.	+	0	source_transcript=ENST00000711223.1;source_transcript_name=CSF2RA-233;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711223.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711223.1,ENST00000711223.1;transcript_id=HG003_chrY_T0000084;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000084;transcript_name=HG003_chrY_T0000084;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000084;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083997	1128725	100	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=HG003_chrY_T0000085;Name=CSF2RA
HG003_chrY	CAT	exon	1083997	1084031	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000085:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000085:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000085:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000085:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000085:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000085:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000085;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000085:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000085:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000085:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000085:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000085:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000085:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000085:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000085:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000085:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000085:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000085:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000085:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1123881	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000085:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000085:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123937	.	+	2	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000085:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1123935	1123937	.	+	0	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000085;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000085:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128725	.	+	.	source_transcript=ENST00000711224.1;source_transcript_name=CSF2RA-234;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711224.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711224.1,ENST00000711224.1;transcript_id=HG003_chrY_T0000085;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000085;transcript_name=HG003_chrY_T0000085;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000085:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1083997	1128725	1000	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=HG003_chrY_T0000086;Name=CSF2RA
HG003_chrY	CAT	exon	1083997	1084031	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000086:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1084032	1091734	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000086:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1091735	1091822	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000086:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1091823	1099694	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000086:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1099695	1099796	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000086:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000086:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000086;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000086:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000086:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000086:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000086:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000086:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000086:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000086:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000086:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000086:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000086:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000086:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000086:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000086:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000086:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000086:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000086:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000086:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000086:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1122358	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000086:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1122359	1122455	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000086:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1122359	1122406	.	+	0	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000086:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1122404	1122406	.	+	0	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000086;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1122456	1123881	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000086:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000086:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000086:10;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128725	.	+	.	source_transcript=ENST00000711225.1;source_transcript_name=CSF2RA-235;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711225.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711225.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711225.1,ENST00000711225.1;transcript_id=HG003_chrY_T0000086;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000086;transcript_name=HG003_chrY_T0000086;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000086:11;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1099703	1128429	100	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=HG003_chrY_T0000087;Name=CSF2RA
HG003_chrY	CAT	exon	1099703	1099796	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000087:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1099721	1099796	.	+	0	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000087:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1099721	1099723	.	+	0	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=start_codon:HG003_chrY_T0000087;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1099797	1102784	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000087:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1102785	1102927	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000087:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1102785	1102927	.	+	2	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000087:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000087:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105641	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000087:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105518	1105641	.	+	0	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000087:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000087:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1105887	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000087:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1105758	1105887	.	+	2	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000087:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105888	1107333	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000087:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1107334	1107506	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000087:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1107334	1107506	.	+	1	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000087:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000087:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000087:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1111623	1111756	.	+	2	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000087:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000087:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000087:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1112722	1112751	.	+	0	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000087:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000087:6;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000087:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1118926	1119061	.	+	0	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000087:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1123881	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000087:7;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1123882	1123963	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000087:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1123882	1123937	.	+	2	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=CDS:HG003_chrY_T0000087:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1123935	1123937	.	+	0	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=stop_codon:HG003_chrY_T0000087;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1123964	1128192	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000087:8;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128193	1128429	.	+	.	source_transcript=ENST00000711226.1;source_transcript_name=CSF2RA-236;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711226.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711226.1,ENST00000711226.1;transcript_id=HG003_chrY_T0000087;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000087;transcript_name=HG003_chrY_T0000087;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000087:9;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1102657	1105639	1000	+	.	source_transcript=ENST00000711227.1;source_transcript_name=CSF2RA-237;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711227.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711227.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711227.1,ENST00000711227.1;transcript_id=HG003_chrY_T0000088;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000088;gene_name=CSF2RA;ID=HG003_chrY_T0000088;Name=CSF2RA
HG003_chrY	CAT	exon	1102657	1102927	.	+	.	source_transcript=ENST00000711227.1;source_transcript_name=CSF2RA-237;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711227.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711227.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711227.1,ENST00000711227.1;transcript_id=HG003_chrY_T0000088;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000088;transcript_name=HG003_chrY_T0000088;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000088:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1102928	1105517	.	+	.	source_transcript=ENST00000711227.1;source_transcript_name=CSF2RA-237;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711227.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711227.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711227.1,ENST00000711227.1;transcript_id=HG003_chrY_T0000088;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000088;transcript_name=HG003_chrY_T0000088;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000088:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105518	1105639	.	+	.	source_transcript=ENST00000711227.1;source_transcript_name=CSF2RA-237;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711227.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711227.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711227.1,ENST00000711227.1;transcript_id=HG003_chrY_T0000088;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000088;transcript_name=HG003_chrY_T0000088;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000088:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1105597	1106104	1000	+	.	source_transcript=ENST00000711228.1;source_transcript_name=CSF2RA-238;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711228.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711228.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711228.1,ENST00000711228.1;transcript_id=HG003_chrY_T0000089;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000089;gene_name=CSF2RA;ID=HG003_chrY_T0000089;Name=CSF2RA
HG003_chrY	CAT	exon	1105597	1105641	.	+	.	source_transcript=ENST00000711228.1;source_transcript_name=CSF2RA-238;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711228.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711228.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711228.1,ENST00000711228.1;transcript_id=HG003_chrY_T0000089;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000089;transcript_name=HG003_chrY_T0000089;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000089:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1105642	1105757	.	+	.	source_transcript=ENST00000711228.1;source_transcript_name=CSF2RA-238;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711228.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711228.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711228.1,ENST00000711228.1;transcript_id=HG003_chrY_T0000089;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000089;transcript_name=HG003_chrY_T0000089;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000089:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1105758	1106104	.	+	.	source_transcript=ENST00000711228.1;source_transcript_name=CSF2RA-238;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711228.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711228.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711228.1,ENST00000711228.1;transcript_id=HG003_chrY_T0000089;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000089;transcript_name=HG003_chrY_T0000089;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000089:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1107450	1128713	1000	+	.	source_transcript=ENST00000711229.1;source_transcript_name=CSF2RA-239;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711229.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711229.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711229.1,ENST00000711229.1;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000090;gene_name=CSF2RA;ID=HG003_chrY_T0000090;Name=CSF2RA
HG003_chrY	CAT	exon	1107450	1107506	.	+	.	source_transcript=ENST00000711229.1;source_transcript_name=CSF2RA-239;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711229.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711229.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711229.1,ENST00000711229.1;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000090;transcript_name=HG003_chrY_T0000090;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000090:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1107507	1111622	.	+	.	source_transcript=ENST00000711229.1;source_transcript_name=CSF2RA-239;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711229.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711229.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711229.1,ENST00000711229.1;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000090;transcript_name=HG003_chrY_T0000090;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000090:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1111623	1111756	.	+	.	source_transcript=ENST00000711229.1;source_transcript_name=CSF2RA-239;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711229.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711229.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711229.1,ENST00000711229.1;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000090;transcript_name=HG003_chrY_T0000090;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000090:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711229.1;source_transcript_name=CSF2RA-239;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711229.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711229.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711229.1,ENST00000711229.1;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000090;transcript_name=HG003_chrY_T0000090;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000090:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112751	.	+	.	source_transcript=ENST00000711229.1;source_transcript_name=CSF2RA-239;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711229.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711229.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711229.1,ENST00000711229.1;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000090;transcript_name=HG003_chrY_T0000090;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000090:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112752	1118925	.	+	.	source_transcript=ENST00000711229.1;source_transcript_name=CSF2RA-239;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711229.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711229.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711229.1,ENST00000711229.1;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000090;transcript_name=HG003_chrY_T0000090;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000090:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1118926	1119061	.	+	.	source_transcript=ENST00000711229.1;source_transcript_name=CSF2RA-239;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711229.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711229.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711229.1,ENST00000711229.1;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000090;transcript_name=HG003_chrY_T0000090;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000090:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1119062	1121332	.	+	.	source_transcript=ENST00000711229.1;source_transcript_name=CSF2RA-239;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711229.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711229.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711229.1,ENST00000711229.1;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000090;transcript_name=HG003_chrY_T0000090;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000090:3;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1121333	1121352	.	+	.	source_transcript=ENST00000711229.1;source_transcript_name=CSF2RA-239;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711229.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711229.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711229.1,ENST00000711229.1;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000090;transcript_name=HG003_chrY_T0000090;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000090:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1121353	1128614	.	+	.	source_transcript=ENST00000711229.1;source_transcript_name=CSF2RA-239;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711229.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711229.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711229.1,ENST00000711229.1;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000090;transcript_name=HG003_chrY_T0000090;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000090:4;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1128615	1128713	.	+	.	source_transcript=ENST00000711229.1;source_transcript_name=CSF2RA-239;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711229.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711229.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711229.1,ENST00000711229.1;transcript_id=HG003_chrY_T0000090;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000090;transcript_name=HG003_chrY_T0000090;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000090:5;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1111520	1112873	1000	+	.	source_transcript=ENST00000711230.1;source_transcript_name=CSF2RA-240;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711230.1;transcript_score=299.743;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711230.1;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000094;gene_name=CSF2RA;ID=HG003_chrY_T0000094;Name=CSF2RA
HG003_chrY	CAT	exon	1111520	1111756	.	+	.	source_transcript=ENST00000711230.1;source_transcript_name=CSF2RA-240;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711230.1;transcript_score=299.743;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711230.1;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000094;transcript_name=HG003_chrY_T0000094;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000094:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711230.1;source_transcript_name=CSF2RA-240;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711230.1;transcript_score=299.743;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711230.1;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000094;transcript_name=HG003_chrY_T0000094;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000094:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112873	.	+	.	source_transcript=ENST00000711230.1;source_transcript_name=CSF2RA-240;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711230.1;transcript_score=299.743;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;alternative_source_transcripts=ENST00000711230.1;transcript_id=HG003_chrY_T0000094;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000094;transcript_name=HG003_chrY_T0000094;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000094:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1111520	1113212	1000	+	.	source_transcript=ENST00000711230.1;source_transcript_name=CSF2RA-240;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711230.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711230.1;transcript_score=299.743;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_G0000022;transcript_name=HG003_chrY_T0000095;gene_name=CSF2RA;ID=HG003_chrY_T0000095;Name=CSF2RA
HG003_chrY	CAT	exon	1111520	1111756	.	+	.	source_transcript=ENST00000711230.1;source_transcript_name=CSF2RA-240;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711230.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711230.1;transcript_score=299.743;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000095;transcript_name=HG003_chrY_T0000095;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000095:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1111757	1112721	.	+	.	source_transcript=ENST00000711230.1;source_transcript_name=CSF2RA-240;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711230.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711230.1;transcript_score=299.743;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000095;transcript_name=HG003_chrY_T0000095;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000095:0;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1112722	1112870	.	+	.	source_transcript=ENST00000711230.1;source_transcript_name=CSF2RA-240;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711230.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711230.1;transcript_score=299.743;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000095;transcript_name=HG003_chrY_T0000095;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000095:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1112871	1113209	.	+	.	source_transcript=ENST00000711230.1;source_transcript_name=CSF2RA-240;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711230.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711230.1;transcript_score=299.743;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000095;transcript_name=HG003_chrY_T0000095;gene_name=CSF2RA;ID=intron:HG003_chrY_T0000095:1;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1113210	1113212	.	+	.	source_transcript=ENST00000711230.1;source_transcript_name=CSF2RA-240;source_gene=ENSG00000292357.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292357.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711230.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711230.1;transcript_score=299.743;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSF2RA;transcript_id=HG003_chrY_T0000095;gene_id=HG003_chrY_G0000022;Parent=HG003_chrY_T0000095;transcript_name=HG003_chrY_T0000095;gene_name=CSF2RA;ID=exon:HG003_chrY_T0000095:2;Name=CSF2RA;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1110605	1110679	.	+	.	source_gene_common_name=MIR3690;source_gene=ENSG00000292355.1;gene_id=HG003_chrY_G0000023;gene_biotype=miRNA;gene_name=MIR3690;gene_sources=liftoff;ID=HG003_chrY_G0000023;Name=MIR3690
HG003_chrY	CAT	transcript	1110605	1110679	1000	+	.	source_transcript=ENST00000711140.1;source_transcript_name=MIR3690-202;source_gene=ENSG00000292355.1;source_gene_biotype=miRNA;original_gene_id=ENSG00000292355.1;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=ENST00000711140.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711140.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;transcript_id=HG003_chrY_T0000091;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_G0000023;transcript_name=HG003_chrY_T0000091;gene_name=MIR3690;ID=HG003_chrY_T0000091;Name=MIR3690
HG003_chrY	CAT	exon	1110605	1110679	.	+	.	source_transcript=ENST00000711140.1;source_transcript_name=MIR3690-202;source_gene=ENSG00000292355.1;source_gene_biotype=miRNA;original_gene_id=ENSG00000292355.1;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=ENST00000711140.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711140.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;transcript_id=HG003_chrY_T0000091;gene_id=HG003_chrY_G0000023;Parent=HG003_chrY_T0000091;transcript_name=HG003_chrY_T0000091;gene_name=MIR3690;ID=exon:HG003_chrY_T0000091:0;Name=MIR3690;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1110908	1110982	.	+	.	source_gene_common_name=MIR3690;source_gene=ENSG00000292355.1;alternative_source_transcripts=ENST00000711140.1;gene_id=HG003_chrY_G0000024;gene_biotype=miRNA;gene_name=MIR3690;gene_sources=liftoff;ID=HG003_chrY_G0000024;Name=MIR3690
HG003_chrY	CAT	transcript	1110908	1110982	1000	+	.	source_transcript=ENST00000711140.1;source_transcript_name=MIR3690-202;source_gene=ENSG00000292355.1;source_gene_biotype=miRNA;original_gene_id=ENSG00000292355.1;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=ENST00000711140.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711140.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=ENST00000711140.1;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_G0000024;transcript_name=HG003_chrY_T0000092;gene_name=MIR3690;ID=HG003_chrY_T0000092;Name=MIR3690
HG003_chrY	CAT	exon	1110908	1110982	.	+	.	source_transcript=ENST00000711140.1;source_transcript_name=MIR3690-202;source_gene=ENSG00000292355.1;source_gene_biotype=miRNA;original_gene_id=ENSG00000292355.1;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=ENST00000711140.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711140.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=ENST00000711140.1;transcript_id=HG003_chrY_T0000092;gene_id=HG003_chrY_G0000024;Parent=HG003_chrY_T0000092;transcript_name=HG003_chrY_T0000092;gene_name=MIR3690;ID=exon:HG003_chrY_T0000092:0;Name=MIR3690;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1111211	1111285	.	+	.	source_gene_common_name=MIR3690;source_gene=ENSG00000292355.1;alternative_source_transcripts=ENST00000711140.1;gene_id=HG003_chrY_G0000025;gene_biotype=miRNA;gene_name=MIR3690;gene_sources=liftoff;ID=HG003_chrY_G0000025;Name=MIR3690
HG003_chrY	CAT	transcript	1111211	1111285	1000	+	.	source_transcript=ENST00000711140.1;source_transcript_name=MIR3690-202;source_gene=ENSG00000292355.1;source_gene_biotype=miRNA;original_gene_id=ENSG00000292355.1;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=ENST00000711140.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711140.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=ENST00000711140.1;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_G0000025;transcript_name=HG003_chrY_T0000093;gene_name=MIR3690;ID=HG003_chrY_T0000093;Name=MIR3690
HG003_chrY	CAT	exon	1111211	1111285	.	+	.	source_transcript=ENST00000711140.1;source_transcript_name=MIR3690-202;source_gene=ENSG00000292355.1;source_gene_biotype=miRNA;original_gene_id=ENSG00000292355.1;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=ENST00000711140.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711140.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR3690;alternative_source_transcripts=ENST00000711140.1;transcript_id=HG003_chrY_T0000093;gene_id=HG003_chrY_G0000025;Parent=HG003_chrY_T0000093;transcript_name=HG003_chrY_T0000093;gene_name=MIR3690;ID=exon:HG003_chrY_T0000093:0;Name=MIR3690;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1118691	1118810	.	-	.	source_gene_common_name=RNA5SP498;source_gene=ENSG00000292356.1;alternative_source_transcripts=ENST00000711139.1,ENST00000711139.1;gene_id=HG003_chrY_G0000026;gene_biotype=rRNA_pseudogene;gene_name=RNA5SP498;gene_sources=liftoff;ID=HG003_chrY_G0000026;Name=RNA5SP498
HG003_chrY	CAT	transcript	1118691	1118810	1000	-	.	source_transcript=ENST00000711139.1;source_transcript_name=RNA5SP498-202;source_gene=ENSG00000292356.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000292356.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000711139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711139.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP498;alternative_source_transcripts=ENST00000711139.1,ENST00000711139.1;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_G0000026;transcript_name=HG003_chrY_T0000096;gene_name=RNA5SP498;ID=HG003_chrY_T0000096;Name=RNA5SP498
HG003_chrY	CAT	exon	1118691	1118810	.	-	.	source_transcript=ENST00000711139.1;source_transcript_name=RNA5SP498-202;source_gene=ENSG00000292356.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000292356.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000711139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711139.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP498;alternative_source_transcripts=ENST00000711139.1,ENST00000711139.1;transcript_id=HG003_chrY_T0000096;gene_id=HG003_chrY_G0000026;Parent=HG003_chrY_T0000096;transcript_name=HG003_chrY_T0000096;gene_name=RNA5SP498;ID=exon:HG003_chrY_T0000096:0;Name=RNA5SP498;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1155927	1200962	.	+	.	source_gene_common_name=IL3RA;source_gene=ENSG00000292332.1;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;gene_id=HG003_chrY_G0000027;gene_biotype=protein_coding;gene_name=IL3RA;gene_sources=liftoff;ID=HG003_chrY_G0000027;Name=IL3RA
HG003_chrY	CAT	transcript	1155927	1200962	100	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_G0000027;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=HG003_chrY_T0000097;Name=IL3RA
HG003_chrY	CAT	exon	1155927	1156237	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=exon:HG003_chrY_T0000097:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1156238	1161035	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=intron:HG003_chrY_T0000097:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1161036	1161137	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=exon:HG003_chrY_T0000097:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1161074	1161137	.	+	0	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000097:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1161074	1161076	.	+	0	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=start_codon:HG003_chrY_T0000097;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1161138	1171422	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=intron:HG003_chrY_T0000097:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171423	1171555	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=exon:HG003_chrY_T0000097:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171423	1171555	.	+	2	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000097:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171556	1171644	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=intron:HG003_chrY_T0000097:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171645	1171829	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=exon:HG003_chrY_T0000097:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171645	1171829	.	+	1	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000097:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171830	1175457	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=intron:HG003_chrY_T0000097:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1175458	1175573	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=exon:HG003_chrY_T0000097:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1175458	1175573	.	+	2	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000097:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1175574	1178096	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=intron:HG003_chrY_T0000097:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1178097	1178123	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=exon:HG003_chrY_T0000097:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1178097	1178123	.	+	0	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000097:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1178124	1184416	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=intron:HG003_chrY_T0000097:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1184417	1184531	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=exon:HG003_chrY_T0000097:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1184417	1184531	.	+	0	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000097:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1184532	1196833	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=intron:HG003_chrY_T0000097:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1196834	1196939	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=exon:HG003_chrY_T0000097:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1196834	1196939	.	+	2	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000097:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1196940	1199216	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=intron:HG003_chrY_T0000097:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1199217	1199298	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=exon:HG003_chrY_T0000097:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1199217	1199298	.	+	1	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000097:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1199299	1200662	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=intron:HG003_chrY_T0000097:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1200663	1200962	.	+	.	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=exon:HG003_chrY_T0000097:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1200663	1200737	.	+	0	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000097:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1200735	1200737	.	+	0	source_transcript=ENST00000711217.1;source_transcript_name=IL3RA-204;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711217.1,ENST00000711217.1;transcript_id=HG003_chrY_T0000097;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000097;transcript_name=HG003_chrY_T0000097;gene_name=IL3RA;ID=stop_codon:HG003_chrY_T0000097;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1156096	1200962	100	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_G0000027;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=HG003_chrY_T0000098;Name=IL3RA
HG003_chrY	CAT	exon	1156096	1156237	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=exon:HG003_chrY_T0000098:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1156238	1161035	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=intron:HG003_chrY_T0000098:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1161036	1161137	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=exon:HG003_chrY_T0000098:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1161074	1161137	.	+	0	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000098:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1161074	1161076	.	+	0	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=start_codon:HG003_chrY_T0000098;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1161138	1164627	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=intron:HG003_chrY_T0000098:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1164628	1164746	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=exon:HG003_chrY_T0000098:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1164628	1164746	.	+	2	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000098:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1164747	1167745	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=intron:HG003_chrY_T0000098:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1167746	1167860	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=exon:HG003_chrY_T0000098:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1167746	1167860	.	+	0	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000098:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1167861	1171422	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=intron:HG003_chrY_T0000098:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171423	1171555	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=exon:HG003_chrY_T0000098:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171423	1171555	.	+	2	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000098:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171556	1171644	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=intron:HG003_chrY_T0000098:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171645	1171829	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=exon:HG003_chrY_T0000098:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171645	1171829	.	+	1	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000098:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171830	1175457	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=intron:HG003_chrY_T0000098:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1175458	1175573	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=exon:HG003_chrY_T0000098:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1175458	1175573	.	+	2	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000098:5;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1175574	1178096	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=intron:HG003_chrY_T0000098:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1178097	1178123	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=exon:HG003_chrY_T0000098:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1178097	1178123	.	+	0	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000098:6;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1178124	1184416	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=intron:HG003_chrY_T0000098:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1184417	1184531	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=exon:HG003_chrY_T0000098:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1184417	1184531	.	+	0	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000098:7;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1184532	1196833	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=intron:HG003_chrY_T0000098:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1196834	1196939	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=exon:HG003_chrY_T0000098:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1196834	1196939	.	+	2	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000098:8;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1196940	1199216	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=intron:HG003_chrY_T0000098:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1199217	1199298	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=exon:HG003_chrY_T0000098:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1199217	1199298	.	+	1	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000098:9;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1199299	1200662	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=intron:HG003_chrY_T0000098:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1200663	1200962	.	+	.	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=exon:HG003_chrY_T0000098:11;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1200663	1200737	.	+	0	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000098:10;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1200735	1200737	.	+	0	source_transcript=ENST00000711219.1;source_transcript_name=IL3RA-206;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711219.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711219.1,ENST00000711219.1;transcript_id=HG003_chrY_T0000098;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000098;transcript_name=HG003_chrY_T0000098;gene_name=IL3RA;ID=stop_codon:HG003_chrY_T0000098;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1156107	1175568	100	+	.	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_G0000027;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=HG003_chrY_T0000099;Name=IL3RA
HG003_chrY	CAT	exon	1156107	1156237	.	+	.	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=exon:HG003_chrY_T0000099:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1156238	1161035	.	+	.	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=intron:HG003_chrY_T0000099:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1161036	1161137	.	+	.	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=exon:HG003_chrY_T0000099:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1161074	1161137	.	+	0	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000099:0;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1161074	1161076	.	+	0	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=start_codon:HG003_chrY_T0000099;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1161138	1171422	.	+	.	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=intron:HG003_chrY_T0000099:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171423	1171555	.	+	.	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=exon:HG003_chrY_T0000099:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171423	1171555	.	+	2	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000099:1;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171556	1171644	.	+	.	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=intron:HG003_chrY_T0000099:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1171645	1171829	.	+	.	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=exon:HG003_chrY_T0000099:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1171645	1171829	.	+	1	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000099:2;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1171830	1175457	.	+	.	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=intron:HG003_chrY_T0000099:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1175458	1175568	.	+	.	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=exon:HG003_chrY_T0000099:4;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1175458	1175568	.	+	2	source_transcript=ENST00000711218.1;source_transcript_name=IL3RA-205;source_gene=ENSG00000292332.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292332.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711218.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL3RA;alternative_source_transcripts=ENST00000711218.1,ENST00000711218.1;transcript_id=HG003_chrY_T0000099;gene_id=HG003_chrY_G0000027;Parent=HG003_chrY_T0000099;transcript_name=HG003_chrY_T0000099;gene_name=IL3RA;ID=CDS:HG003_chrY_T0000099:3;Name=IL3RA;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1156476	1161125	.	-	.	source_gene_common_name=ENSG00000310549;source_gene=ENSG00000310549.1;alternative_source_transcripts=ENST00000850718.1,ENST00000850718.1;gene_id=HG003_chrY_G0000028;gene_biotype=lncRNA;gene_name=ENSG00000310549;gene_sources=liftoff;ID=HG003_chrY_G0000028;Name=ENSG00000310549
HG003_chrY	CAT	transcript	1156476	1161125	1000	-	.	source_transcript=ENST00000850718.1;source_transcript_name=ENST00000850718;source_gene=ENSG00000310549.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310549.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850718.1;transcript_score=299.65;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310549;alternative_source_transcripts=ENST00000850718.1,ENST00000850718.1;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_G0000028;transcript_name=HG003_chrY_T0000100;gene_name=ENSG00000310549;ID=HG003_chrY_T0000100;Name=ENSG00000310549
HG003_chrY	CAT	exon	1156476	1156827	.	-	.	source_transcript=ENST00000850718.1;source_transcript_name=ENST00000850718;source_gene=ENSG00000310549.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310549.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850718.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310549;alternative_source_transcripts=ENST00000850718.1,ENST00000850718.1;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_T0000100;transcript_name=HG003_chrY_T0000100;gene_name=ENSG00000310549;ID=exon:HG003_chrY_T0000100:0;Name=ENSG00000310549;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1156828	1160905	.	-	.	source_transcript=ENST00000850718.1;source_transcript_name=ENST00000850718;source_gene=ENSG00000310549.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310549.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850718.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310549;alternative_source_transcripts=ENST00000850718.1,ENST00000850718.1;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_T0000100;transcript_name=HG003_chrY_T0000100;gene_name=ENSG00000310549;ID=intron:HG003_chrY_T0000100:0;Name=ENSG00000310549;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1160906	1161125	.	-	.	source_transcript=ENST00000850718.1;source_transcript_name=ENST00000850718;source_gene=ENSG00000310549.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310549.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850718.1;transcript_score=299.65;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310549;alternative_source_transcripts=ENST00000850718.1,ENST00000850718.1;transcript_id=HG003_chrY_T0000100;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_T0000100;transcript_name=HG003_chrY_T0000100;gene_name=ENSG00000310549;ID=exon:HG003_chrY_T0000100:1;Name=ENSG00000310549;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1157950	1161123	1000	-	.	source_transcript=ENST00000850719.1;source_transcript_name=ENST00000850719;source_gene=ENSG00000310549.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310549.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850719.1;transcript_score=299.45799999999997;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310549;alternative_source_transcripts=ENST00000850719.1,ENST00000850719.1;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_G0000028;transcript_name=HG003_chrY_T0000101;gene_name=ENSG00000310549;ID=HG003_chrY_T0000101;Name=ENSG00000310549
HG003_chrY	CAT	exon	1157950	1158100	.	-	.	source_transcript=ENST00000850719.1;source_transcript_name=ENST00000850719;source_gene=ENSG00000310549.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310549.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850719.1;transcript_score=299.45799999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310549;alternative_source_transcripts=ENST00000850719.1,ENST00000850719.1;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_T0000101;transcript_name=HG003_chrY_T0000101;gene_name=ENSG00000310549;ID=exon:HG003_chrY_T0000101:0;Name=ENSG00000310549;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1158101	1160905	.	-	.	source_transcript=ENST00000850719.1;source_transcript_name=ENST00000850719;source_gene=ENSG00000310549.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310549.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850719.1;transcript_score=299.45799999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310549;alternative_source_transcripts=ENST00000850719.1,ENST00000850719.1;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_T0000101;transcript_name=HG003_chrY_T0000101;gene_name=ENSG00000310549;ID=intron:HG003_chrY_T0000101:0;Name=ENSG00000310549;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1160906	1161123	.	-	.	source_transcript=ENST00000850719.1;source_transcript_name=ENST00000850719;source_gene=ENSG00000310549.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310549.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850719.1;transcript_score=299.45799999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310549;alternative_source_transcripts=ENST00000850719.1,ENST00000850719.1;transcript_id=HG003_chrY_T0000101;gene_id=HG003_chrY_G0000028;Parent=HG003_chrY_T0000101;transcript_name=HG003_chrY_T0000101;gene_name=ENSG00000310549;ID=exon:HG003_chrY_T0000101:1;Name=ENSG00000310549;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1204419	1210499	.	-	.	source_gene_common_name=SLC25A6;source_gene=ENSG00000292334.1;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;gene_id=HG003_chrY_G0000029;gene_biotype=protein_coding;gene_name=SLC25A6;gene_sources=liftoff;ID=HG003_chrY_G0000029;Name=SLC25A6
HG003_chrY	CAT	transcript	1204419	1210499	100	-	.	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_G0000029;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=HG003_chrY_T0000102;Name=SLC25A6
HG003_chrY	CAT	exon	1204419	1205026	.	-	.	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000102:0;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1204869	1205026	.	-	2	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=CDS:HG003_chrY_T0000102:0;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1204869	1204871	.	-	0	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=stop_codon:HG003_chrY_T0000102;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1205027	1205545	.	-	.	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=intron:HG003_chrY_T0000102:0;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1205546	1205686	.	-	.	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000102:1;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1205546	1205686	.	-	2	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=CDS:HG003_chrY_T0000102:1;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1205687	1207507	.	-	.	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=intron:HG003_chrY_T0000102:1;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1207508	1207994	.	-	.	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000102:2;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1207508	1207994	.	-	0	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=CDS:HG003_chrY_T0000102:2;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1207995	1210284	.	-	.	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=intron:HG003_chrY_T0000102:2;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1210285	1210499	.	-	.	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000102:3;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1210285	1210395	.	-	0	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=CDS:HG003_chrY_T0000102:3;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1210393	1210395	.	-	0	source_transcript=ENST00000711214.1;source_transcript_name=SLC25A6-206;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711214.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711214.1,ENST00000711214.1;transcript_id=HG003_chrY_T0000102;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000102;transcript_name=HG003_chrY_T0000102;gene_name=SLC25A6;ID=start_codon:HG003_chrY_T0000102;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1205578	1210489	1000	-	.	source_transcript=ENST00000711213.1;source_transcript_name=SLC25A6-205;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711213.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711213.1,ENST00000711213.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_G0000029;transcript_name=HG003_chrY_T0000103;gene_name=SLC25A6;ID=HG003_chrY_T0000103;Name=SLC25A6
HG003_chrY	CAT	exon	1205578	1205686	.	-	.	source_transcript=ENST00000711213.1;source_transcript_name=SLC25A6-205;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711213.1,ENST00000711213.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000103;transcript_name=HG003_chrY_T0000103;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000103:0;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1205687	1207507	.	-	.	source_transcript=ENST00000711213.1;source_transcript_name=SLC25A6-205;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711213.1,ENST00000711213.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000103;transcript_name=HG003_chrY_T0000103;gene_name=SLC25A6;ID=intron:HG003_chrY_T0000103:0;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1207508	1207994	.	-	.	source_transcript=ENST00000711213.1;source_transcript_name=SLC25A6-205;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711213.1,ENST00000711213.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000103;transcript_name=HG003_chrY_T0000103;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000103:1;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1207995	1208458	.	-	.	source_transcript=ENST00000711213.1;source_transcript_name=SLC25A6-205;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711213.1,ENST00000711213.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000103;transcript_name=HG003_chrY_T0000103;gene_name=SLC25A6;ID=intron:HG003_chrY_T0000103:1;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1208459	1208557	.	-	.	source_transcript=ENST00000711213.1;source_transcript_name=SLC25A6-205;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711213.1,ENST00000711213.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000103;transcript_name=HG003_chrY_T0000103;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000103:2;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1208558	1210284	.	-	.	source_transcript=ENST00000711213.1;source_transcript_name=SLC25A6-205;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711213.1,ENST00000711213.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000103;transcript_name=HG003_chrY_T0000103;gene_name=SLC25A6;ID=intron:HG003_chrY_T0000103:2;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1210285	1210489	.	-	.	source_transcript=ENST00000711213.1;source_transcript_name=SLC25A6-205;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711213.1,ENST00000711213.1;transcript_id=HG003_chrY_T0000103;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000103;transcript_name=HG003_chrY_T0000103;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000103:3;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1205612	1210474	1000	-	.	source_transcript=ENST00000711212.1;source_transcript_name=SLC25A6-204;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711212.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711212.1,ENST00000711212.1;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_G0000029;transcript_name=HG003_chrY_T0000104;gene_name=SLC25A6;ID=HG003_chrY_T0000104;Name=SLC25A6
HG003_chrY	CAT	exon	1205612	1205686	.	-	.	source_transcript=ENST00000711212.1;source_transcript_name=SLC25A6-204;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711212.1,ENST00000711212.1;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000104;transcript_name=HG003_chrY_T0000104;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000104:0;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1205687	1207507	.	-	.	source_transcript=ENST00000711212.1;source_transcript_name=SLC25A6-204;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711212.1,ENST00000711212.1;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000104;transcript_name=HG003_chrY_T0000104;gene_name=SLC25A6;ID=intron:HG003_chrY_T0000104:0;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1207508	1207994	.	-	.	source_transcript=ENST00000711212.1;source_transcript_name=SLC25A6-204;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711212.1,ENST00000711212.1;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000104;transcript_name=HG003_chrY_T0000104;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000104:1;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1207995	1208458	.	-	.	source_transcript=ENST00000711212.1;source_transcript_name=SLC25A6-204;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711212.1,ENST00000711212.1;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000104;transcript_name=HG003_chrY_T0000104;gene_name=SLC25A6;ID=intron:HG003_chrY_T0000104:1;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1208459	1208560	.	-	.	source_transcript=ENST00000711212.1;source_transcript_name=SLC25A6-204;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711212.1,ENST00000711212.1;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000104;transcript_name=HG003_chrY_T0000104;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000104:2;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1208561	1210284	.	-	.	source_transcript=ENST00000711212.1;source_transcript_name=SLC25A6-204;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711212.1,ENST00000711212.1;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000104;transcript_name=HG003_chrY_T0000104;gene_name=SLC25A6;ID=intron:HG003_chrY_T0000104:2;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1210285	1210474	.	-	.	source_transcript=ENST00000711212.1;source_transcript_name=SLC25A6-204;source_gene=ENSG00000292334.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292334.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A6;alternative_source_transcripts=ENST00000711212.1,ENST00000711212.1;transcript_id=HG003_chrY_T0000104;gene_id=HG003_chrY_G0000029;Parent=HG003_chrY_T0000104;transcript_name=HG003_chrY_T0000104;gene_name=SLC25A6;ID=exon:HG003_chrY_T0000104:3;Name=SLC25A6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1211065	1218930	.	+	.	source_gene_common_name=LINC00106;source_gene=ENSG00000292341.2;alternative_source_transcripts=ENST00000850831.1,ENST00000850831.1;gene_id=HG003_chrY_G0000030;gene_biotype=lncRNA;gene_name=LINC00106;gene_sources=liftoff;ID=HG003_chrY_G0000030;Name=LINC00106
HG003_chrY	CAT	transcript	1211065	1218930	1000	+	.	source_transcript=ENST00000850831.1;source_transcript_name=LINC00106-208;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850831.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850831.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850831.1,ENST00000850831.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_G0000030;transcript_name=HG003_chrY_T0000105;gene_name=LINC00106;ID=HG003_chrY_T0000105;Name=LINC00106
HG003_chrY	CAT	exon	1211065	1211149	.	+	.	source_transcript=ENST00000850831.1;source_transcript_name=LINC00106-208;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850831.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850831.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850831.1,ENST00000850831.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000105;transcript_name=HG003_chrY_T0000105;gene_name=LINC00106;ID=exon:HG003_chrY_T0000105:0;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1211150	1214777	.	+	.	source_transcript=ENST00000850831.1;source_transcript_name=LINC00106-208;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850831.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850831.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850831.1,ENST00000850831.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000105;transcript_name=HG003_chrY_T0000105;gene_name=LINC00106;ID=intron:HG003_chrY_T0000105:0;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1214778	1215054	.	+	.	source_transcript=ENST00000850831.1;source_transcript_name=LINC00106-208;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850831.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850831.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850831.1,ENST00000850831.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000105;transcript_name=HG003_chrY_T0000105;gene_name=LINC00106;ID=exon:HG003_chrY_T0000105:1;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1215055	1217230	.	+	.	source_transcript=ENST00000850831.1;source_transcript_name=LINC00106-208;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850831.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850831.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850831.1,ENST00000850831.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000105;transcript_name=HG003_chrY_T0000105;gene_name=LINC00106;ID=intron:HG003_chrY_T0000105:1;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1217231	1217364	.	+	.	source_transcript=ENST00000850831.1;source_transcript_name=LINC00106-208;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850831.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850831.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850831.1,ENST00000850831.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000105;transcript_name=HG003_chrY_T0000105;gene_name=LINC00106;ID=exon:HG003_chrY_T0000105:2;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1217365	1218566	.	+	.	source_transcript=ENST00000850831.1;source_transcript_name=LINC00106-208;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850831.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850831.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850831.1,ENST00000850831.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000105;transcript_name=HG003_chrY_T0000105;gene_name=LINC00106;ID=intron:HG003_chrY_T0000105:2;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1218567	1218930	.	+	.	source_transcript=ENST00000850831.1;source_transcript_name=LINC00106-208;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850831.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850831.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850831.1,ENST00000850831.1;transcript_id=HG003_chrY_T0000105;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000105;transcript_name=HG003_chrY_T0000105;gene_name=LINC00106;ID=exon:HG003_chrY_T0000105:3;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1211115	1217818	1000	+	.	source_transcript=ENST00000850716.1;source_transcript_name=LINC00106-206;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850716.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850716.1,ENST00000850716.1;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_G0000030;transcript_name=HG003_chrY_T0000106;gene_name=LINC00106;ID=HG003_chrY_T0000106;Name=LINC00106
HG003_chrY	CAT	exon	1211115	1211149	.	+	.	source_transcript=ENST00000850716.1;source_transcript_name=LINC00106-206;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850716.1,ENST00000850716.1;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000106;transcript_name=HG003_chrY_T0000106;gene_name=LINC00106;ID=exon:HG003_chrY_T0000106:0;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1211150	1214777	.	+	.	source_transcript=ENST00000850716.1;source_transcript_name=LINC00106-206;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850716.1,ENST00000850716.1;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000106;transcript_name=HG003_chrY_T0000106;gene_name=LINC00106;ID=intron:HG003_chrY_T0000106:0;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1214778	1215054	.	+	.	source_transcript=ENST00000850716.1;source_transcript_name=LINC00106-206;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850716.1,ENST00000850716.1;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000106;transcript_name=HG003_chrY_T0000106;gene_name=LINC00106;ID=exon:HG003_chrY_T0000106:1;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1215055	1217230	.	+	.	source_transcript=ENST00000850716.1;source_transcript_name=LINC00106-206;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850716.1,ENST00000850716.1;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000106;transcript_name=HG003_chrY_T0000106;gene_name=LINC00106;ID=intron:HG003_chrY_T0000106:1;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1217231	1217364	.	+	.	source_transcript=ENST00000850716.1;source_transcript_name=LINC00106-206;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850716.1,ENST00000850716.1;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000106;transcript_name=HG003_chrY_T0000106;gene_name=LINC00106;ID=exon:HG003_chrY_T0000106:2;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1217365	1217772	.	+	.	source_transcript=ENST00000850716.1;source_transcript_name=LINC00106-206;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850716.1,ENST00000850716.1;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000106;transcript_name=HG003_chrY_T0000106;gene_name=LINC00106;ID=intron:HG003_chrY_T0000106:2;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1217773	1217818	.	+	.	source_transcript=ENST00000850716.1;source_transcript_name=LINC00106-206;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850716.1,ENST00000850716.1;transcript_id=HG003_chrY_T0000106;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000106;transcript_name=HG003_chrY_T0000106;gene_name=LINC00106;ID=exon:HG003_chrY_T0000106:3;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1214778	1218930	1000	+	.	source_transcript=ENST00000850717.1;source_transcript_name=LINC00106-207;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850717.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850717.1,ENST00000850717.1;transcript_id=HG003_chrY_T0000107;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_G0000030;transcript_name=HG003_chrY_T0000107;gene_name=LINC00106;ID=HG003_chrY_T0000107;Name=LINC00106
HG003_chrY	CAT	exon	1214778	1215054	.	+	.	source_transcript=ENST00000850717.1;source_transcript_name=LINC00106-207;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850717.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850717.1,ENST00000850717.1;transcript_id=HG003_chrY_T0000107;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000107;transcript_name=HG003_chrY_T0000107;gene_name=LINC00106;ID=exon:HG003_chrY_T0000107:0;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1215055	1217230	.	+	.	source_transcript=ENST00000850717.1;source_transcript_name=LINC00106-207;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850717.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850717.1,ENST00000850717.1;transcript_id=HG003_chrY_T0000107;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000107;transcript_name=HG003_chrY_T0000107;gene_name=LINC00106;ID=intron:HG003_chrY_T0000107:0;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1217231	1217364	.	+	.	source_transcript=ENST00000850717.1;source_transcript_name=LINC00106-207;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850717.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850717.1,ENST00000850717.1;transcript_id=HG003_chrY_T0000107;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000107;transcript_name=HG003_chrY_T0000107;gene_name=LINC00106;ID=exon:HG003_chrY_T0000107:1;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1217365	1218569	.	+	.	source_transcript=ENST00000850717.1;source_transcript_name=LINC00106-207;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850717.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850717.1,ENST00000850717.1;transcript_id=HG003_chrY_T0000107;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000107;transcript_name=HG003_chrY_T0000107;gene_name=LINC00106;ID=intron:HG003_chrY_T0000107:1;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1218570	1218930	.	+	.	source_transcript=ENST00000850717.1;source_transcript_name=LINC00106-207;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850717.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000850717.1,ENST00000850717.1;transcript_id=HG003_chrY_T0000107;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000107;transcript_name=HG003_chrY_T0000107;gene_name=LINC00106;ID=exon:HG003_chrY_T0000107:2;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1215431	1217808	1000	+	.	source_transcript=ENST00000711188.1;source_transcript_name=LINC00106-205;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711188.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000711188.1,ENST00000711188.1;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_G0000030;transcript_name=HG003_chrY_T0000108;gene_name=LINC00106;ID=HG003_chrY_T0000108;Name=LINC00106
HG003_chrY	CAT	exon	1215431	1215630	.	+	.	source_transcript=ENST00000711188.1;source_transcript_name=LINC00106-205;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711188.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000711188.1,ENST00000711188.1;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000108;transcript_name=HG003_chrY_T0000108;gene_name=LINC00106;ID=exon:HG003_chrY_T0000108:0;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1215631	1217230	.	+	.	source_transcript=ENST00000711188.1;source_transcript_name=LINC00106-205;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711188.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000711188.1,ENST00000711188.1;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000108;transcript_name=HG003_chrY_T0000108;gene_name=LINC00106;ID=intron:HG003_chrY_T0000108:0;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1217231	1217364	.	+	.	source_transcript=ENST00000711188.1;source_transcript_name=LINC00106-205;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711188.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000711188.1,ENST00000711188.1;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000108;transcript_name=HG003_chrY_T0000108;gene_name=LINC00106;ID=exon:HG003_chrY_T0000108:1;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1217365	1217772	.	+	.	source_transcript=ENST00000711188.1;source_transcript_name=LINC00106-205;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711188.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000711188.1,ENST00000711188.1;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000108;transcript_name=HG003_chrY_T0000108;gene_name=LINC00106;ID=intron:HG003_chrY_T0000108:1;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1217773	1217808	.	+	.	source_transcript=ENST00000711188.1;source_transcript_name=LINC00106-205;source_gene=ENSG00000292341.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292341.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711188.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00106;alternative_source_transcripts=ENST00000711188.1,ENST00000711188.1;transcript_id=HG003_chrY_T0000108;gene_id=HG003_chrY_G0000030;Parent=HG003_chrY_T0000108;transcript_name=HG003_chrY_T0000108;gene_name=LINC00106;ID=exon:HG003_chrY_T0000108:2;Name=LINC00106;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1219836	1230901	.	+	.	source_gene_common_name=ASMTL-AS1;source_gene=ENSG00000292331.2;alternative_source_transcripts=ENST00000850709.1,ENST00000850709.1;gene_id=HG003_chrY_G0000031;gene_biotype=lncRNA;gene_name=ASMTL-AS1;gene_sources=liftoff;ID=HG003_chrY_G0000031;Name=ASMTL-AS1
HG003_chrY	CAT	transcript	1219836	1230901	1000	+	.	source_transcript=ENST00000850709.1;source_transcript_name=ASMTL-AS1-215;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850709.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850709.1,ENST00000850709.1;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_G0000031;transcript_name=HG003_chrY_T0000109;gene_name=ASMTL-AS1;ID=HG003_chrY_T0000109;Name=ASMTL-AS1
HG003_chrY	CAT	exon	1219836	1219992	.	+	.	source_transcript=ENST00000850709.1;source_transcript_name=ASMTL-AS1-215;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850709.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850709.1,ENST00000850709.1;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000109;transcript_name=HG003_chrY_T0000109;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000109:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1219993	1220429	.	+	.	source_transcript=ENST00000850709.1;source_transcript_name=ASMTL-AS1-215;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850709.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850709.1,ENST00000850709.1;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000109;transcript_name=HG003_chrY_T0000109;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000109:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1220430	1220631	.	+	.	source_transcript=ENST00000850709.1;source_transcript_name=ASMTL-AS1-215;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850709.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850709.1,ENST00000850709.1;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000109;transcript_name=HG003_chrY_T0000109;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000109:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1220632	1221783	.	+	.	source_transcript=ENST00000850709.1;source_transcript_name=ASMTL-AS1-215;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850709.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850709.1,ENST00000850709.1;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000109;transcript_name=HG003_chrY_T0000109;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000109:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1221784	1221908	.	+	.	source_transcript=ENST00000850709.1;source_transcript_name=ASMTL-AS1-215;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850709.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850709.1,ENST00000850709.1;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000109;transcript_name=HG003_chrY_T0000109;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000109:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221909	1229619	.	+	.	source_transcript=ENST00000850709.1;source_transcript_name=ASMTL-AS1-215;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850709.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850709.1,ENST00000850709.1;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000109;transcript_name=HG003_chrY_T0000109;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000109:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229620	1229765	.	+	.	source_transcript=ENST00000850709.1;source_transcript_name=ASMTL-AS1-215;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850709.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850709.1,ENST00000850709.1;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000109;transcript_name=HG003_chrY_T0000109;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000109:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229766	1230625	.	+	.	source_transcript=ENST00000850709.1;source_transcript_name=ASMTL-AS1-215;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850709.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850709.1,ENST00000850709.1;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000109;transcript_name=HG003_chrY_T0000109;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000109:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1230626	1230901	.	+	.	source_transcript=ENST00000850709.1;source_transcript_name=ASMTL-AS1-215;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850709.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850709.1,ENST00000850709.1;transcript_id=HG003_chrY_T0000109;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000109;transcript_name=HG003_chrY_T0000109;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000109:4;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1219871	1230463	1000	+	.	source_transcript=ENST00000850711.1;source_transcript_name=ASMTL-AS1-217;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850711.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850711.1,ENST00000850711.1;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_G0000031;transcript_name=HG003_chrY_T0000110;gene_name=ASMTL-AS1;ID=HG003_chrY_T0000110;Name=ASMTL-AS1
HG003_chrY	CAT	exon	1219871	1219992	.	+	.	source_transcript=ENST00000850711.1;source_transcript_name=ASMTL-AS1-217;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850711.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850711.1,ENST00000850711.1;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000110;transcript_name=HG003_chrY_T0000110;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000110:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1219993	1220429	.	+	.	source_transcript=ENST00000850711.1;source_transcript_name=ASMTL-AS1-217;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850711.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850711.1,ENST00000850711.1;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000110;transcript_name=HG003_chrY_T0000110;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000110:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1220430	1220631	.	+	.	source_transcript=ENST00000850711.1;source_transcript_name=ASMTL-AS1-217;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850711.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850711.1,ENST00000850711.1;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000110;transcript_name=HG003_chrY_T0000110;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000110:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1220632	1221783	.	+	.	source_transcript=ENST00000850711.1;source_transcript_name=ASMTL-AS1-217;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850711.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850711.1,ENST00000850711.1;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000110;transcript_name=HG003_chrY_T0000110;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000110:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1221784	1221908	.	+	.	source_transcript=ENST00000850711.1;source_transcript_name=ASMTL-AS1-217;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850711.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850711.1,ENST00000850711.1;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000110;transcript_name=HG003_chrY_T0000110;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000110:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221909	1229619	.	+	.	source_transcript=ENST00000850711.1;source_transcript_name=ASMTL-AS1-217;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850711.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850711.1,ENST00000850711.1;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000110;transcript_name=HG003_chrY_T0000110;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000110:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229620	1229765	.	+	.	source_transcript=ENST00000850711.1;source_transcript_name=ASMTL-AS1-217;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850711.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850711.1,ENST00000850711.1;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000110;transcript_name=HG003_chrY_T0000110;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000110:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229766	1230100	.	+	.	source_transcript=ENST00000850711.1;source_transcript_name=ASMTL-AS1-217;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850711.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850711.1,ENST00000850711.1;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000110;transcript_name=HG003_chrY_T0000110;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000110:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1230101	1230463	.	+	.	source_transcript=ENST00000850711.1;source_transcript_name=ASMTL-AS1-217;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850711.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850711.1,ENST00000850711.1;transcript_id=HG003_chrY_T0000110;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000110;transcript_name=HG003_chrY_T0000110;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000110:4;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1219871	1230032	1000	+	.	source_transcript=ENST00000850825.1;source_transcript_name=ASMTL-AS1-220;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850825.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850825.1,ENST00000850825.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_G0000031;transcript_name=HG003_chrY_T0000111;gene_name=ASMTL-AS1;ID=HG003_chrY_T0000111;Name=ASMTL-AS1
HG003_chrY	CAT	exon	1219871	1219992	.	+	.	source_transcript=ENST00000850825.1;source_transcript_name=ASMTL-AS1-220;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850825.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850825.1,ENST00000850825.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000111;transcript_name=HG003_chrY_T0000111;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000111:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1219993	1220429	.	+	.	source_transcript=ENST00000850825.1;source_transcript_name=ASMTL-AS1-220;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850825.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850825.1,ENST00000850825.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000111;transcript_name=HG003_chrY_T0000111;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000111:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1220430	1220631	.	+	.	source_transcript=ENST00000850825.1;source_transcript_name=ASMTL-AS1-220;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850825.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850825.1,ENST00000850825.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000111;transcript_name=HG003_chrY_T0000111;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000111:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1220632	1221783	.	+	.	source_transcript=ENST00000850825.1;source_transcript_name=ASMTL-AS1-220;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850825.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850825.1,ENST00000850825.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000111;transcript_name=HG003_chrY_T0000111;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000111:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1221784	1221908	.	+	.	source_transcript=ENST00000850825.1;source_transcript_name=ASMTL-AS1-220;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850825.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850825.1,ENST00000850825.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000111;transcript_name=HG003_chrY_T0000111;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000111:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221909	1229619	.	+	.	source_transcript=ENST00000850825.1;source_transcript_name=ASMTL-AS1-220;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850825.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850825.1,ENST00000850825.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000111;transcript_name=HG003_chrY_T0000111;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000111:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229620	1230032	.	+	.	source_transcript=ENST00000850825.1;source_transcript_name=ASMTL-AS1-220;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850825.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850825.1,ENST00000850825.1;transcript_id=HG003_chrY_T0000111;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000111;transcript_name=HG003_chrY_T0000111;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000111:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1219881	1230901	1000	+	.	source_transcript=ENST00000850710.1;source_transcript_name=ASMTL-AS1-216;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850710.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850710.1,ENST00000850710.1;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_G0000031;transcript_name=HG003_chrY_T0000112;gene_name=ASMTL-AS1;ID=HG003_chrY_T0000112;Name=ASMTL-AS1
HG003_chrY	CAT	exon	1219881	1219992	.	+	.	source_transcript=ENST00000850710.1;source_transcript_name=ASMTL-AS1-216;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850710.1,ENST00000850710.1;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000112;transcript_name=HG003_chrY_T0000112;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000112:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1219993	1220429	.	+	.	source_transcript=ENST00000850710.1;source_transcript_name=ASMTL-AS1-216;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850710.1,ENST00000850710.1;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000112;transcript_name=HG003_chrY_T0000112;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000112:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1220430	1220631	.	+	.	source_transcript=ENST00000850710.1;source_transcript_name=ASMTL-AS1-216;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850710.1,ENST00000850710.1;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000112;transcript_name=HG003_chrY_T0000112;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000112:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1220632	1221783	.	+	.	source_transcript=ENST00000850710.1;source_transcript_name=ASMTL-AS1-216;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850710.1,ENST00000850710.1;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000112;transcript_name=HG003_chrY_T0000112;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000112:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1221784	1221908	.	+	.	source_transcript=ENST00000850710.1;source_transcript_name=ASMTL-AS1-216;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850710.1,ENST00000850710.1;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000112;transcript_name=HG003_chrY_T0000112;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000112:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221909	1229619	.	+	.	source_transcript=ENST00000850710.1;source_transcript_name=ASMTL-AS1-216;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850710.1,ENST00000850710.1;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000112;transcript_name=HG003_chrY_T0000112;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000112:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229620	1229765	.	+	.	source_transcript=ENST00000850710.1;source_transcript_name=ASMTL-AS1-216;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850710.1,ENST00000850710.1;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000112;transcript_name=HG003_chrY_T0000112;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000112:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229766	1230638	.	+	.	source_transcript=ENST00000850710.1;source_transcript_name=ASMTL-AS1-216;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850710.1,ENST00000850710.1;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000112;transcript_name=HG003_chrY_T0000112;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000112:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1230639	1230901	.	+	.	source_transcript=ENST00000850710.1;source_transcript_name=ASMTL-AS1-216;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850710.1,ENST00000850710.1;transcript_id=HG003_chrY_T0000112;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000112;transcript_name=HG003_chrY_T0000112;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000112:4;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1220175	1221816	1000	+	.	source_transcript=ENST00000711119.1;source_transcript_name=ASMTL-AS1-213;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711119.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711119.1,ENST00000711119.1;transcript_id=HG003_chrY_T0000113;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_G0000031;transcript_name=HG003_chrY_T0000113;gene_name=ASMTL-AS1;ID=HG003_chrY_T0000113;Name=ASMTL-AS1
HG003_chrY	CAT	exon	1220175	1220631	.	+	.	source_transcript=ENST00000711119.1;source_transcript_name=ASMTL-AS1-213;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711119.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711119.1,ENST00000711119.1;transcript_id=HG003_chrY_T0000113;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000113;transcript_name=HG003_chrY_T0000113;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000113:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1220632	1221699	.	+	.	source_transcript=ENST00000711119.1;source_transcript_name=ASMTL-AS1-213;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711119.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711119.1,ENST00000711119.1;transcript_id=HG003_chrY_T0000113;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000113;transcript_name=HG003_chrY_T0000113;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000113:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1221700	1221816	.	+	.	source_transcript=ENST00000711119.1;source_transcript_name=ASMTL-AS1-213;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711119.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711119.1,ENST00000711119.1;transcript_id=HG003_chrY_T0000113;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000113;transcript_name=HG003_chrY_T0000113;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000113:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1220217	1230792	1000	+	.	source_transcript=ENST00000711134.1;source_transcript_name=ASMTL-AS1-214;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711134.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711134.1,ENST00000711134.1;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_G0000031;transcript_name=HG003_chrY_T0000114;gene_name=ASMTL-AS1;ID=HG003_chrY_T0000114;Name=ASMTL-AS1
HG003_chrY	CAT	exon	1220217	1220631	.	+	.	source_transcript=ENST00000711134.1;source_transcript_name=ASMTL-AS1-214;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711134.1,ENST00000711134.1;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000114;transcript_name=HG003_chrY_T0000114;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000114:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1220632	1221783	.	+	.	source_transcript=ENST00000711134.1;source_transcript_name=ASMTL-AS1-214;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711134.1,ENST00000711134.1;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000114;transcript_name=HG003_chrY_T0000114;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000114:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1221784	1221908	.	+	.	source_transcript=ENST00000711134.1;source_transcript_name=ASMTL-AS1-214;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711134.1,ENST00000711134.1;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000114;transcript_name=HG003_chrY_T0000114;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000114:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221909	1229619	.	+	.	source_transcript=ENST00000711134.1;source_transcript_name=ASMTL-AS1-214;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711134.1,ENST00000711134.1;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000114;transcript_name=HG003_chrY_T0000114;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000114:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229620	1229765	.	+	.	source_transcript=ENST00000711134.1;source_transcript_name=ASMTL-AS1-214;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711134.1,ENST00000711134.1;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000114;transcript_name=HG003_chrY_T0000114;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000114:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229766	1230638	.	+	.	source_transcript=ENST00000711134.1;source_transcript_name=ASMTL-AS1-214;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711134.1,ENST00000711134.1;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000114;transcript_name=HG003_chrY_T0000114;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000114:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1230639	1230792	.	+	.	source_transcript=ENST00000711134.1;source_transcript_name=ASMTL-AS1-214;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711134.1,ENST00000711134.1;transcript_id=HG003_chrY_T0000114;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000114;transcript_name=HG003_chrY_T0000114;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000114:3;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1220382	1230463	1000	+	.	source_transcript=ENST00000850712.1;source_transcript_name=ASMTL-AS1-218;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850712.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850712.1,ENST00000850712.1;transcript_id=HG003_chrY_T0000115;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_G0000031;transcript_name=HG003_chrY_T0000115;gene_name=ASMTL-AS1;ID=HG003_chrY_T0000115;Name=ASMTL-AS1
HG003_chrY	CAT	exon	1220382	1220631	.	+	.	source_transcript=ENST00000850712.1;source_transcript_name=ASMTL-AS1-218;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850712.1,ENST00000850712.1;transcript_id=HG003_chrY_T0000115;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000115;transcript_name=HG003_chrY_T0000115;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000115:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1220632	1221783	.	+	.	source_transcript=ENST00000850712.1;source_transcript_name=ASMTL-AS1-218;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850712.1,ENST00000850712.1;transcript_id=HG003_chrY_T0000115;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000115;transcript_name=HG003_chrY_T0000115;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000115:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1221784	1221908	.	+	.	source_transcript=ENST00000850712.1;source_transcript_name=ASMTL-AS1-218;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850712.1,ENST00000850712.1;transcript_id=HG003_chrY_T0000115;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000115;transcript_name=HG003_chrY_T0000115;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000115:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221909	1229619	.	+	.	source_transcript=ENST00000850712.1;source_transcript_name=ASMTL-AS1-218;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850712.1,ENST00000850712.1;transcript_id=HG003_chrY_T0000115;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000115;transcript_name=HG003_chrY_T0000115;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000115:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229620	1230463	.	+	.	source_transcript=ENST00000850712.1;source_transcript_name=ASMTL-AS1-218;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850712.1,ENST00000850712.1;transcript_id=HG003_chrY_T0000115;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000115;transcript_name=HG003_chrY_T0000115;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000115:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221504	1230463	1000	+	.	source_transcript=ENST00000850713.1;source_transcript_name=ASMTL-AS1-219;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850713.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850713.1,ENST00000850713.1;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_G0000031;transcript_name=HG003_chrY_T0000121;gene_name=ASMTL-AS1;ID=HG003_chrY_T0000121;Name=ASMTL-AS1
HG003_chrY	CAT	exon	1221504	1221908	.	+	.	source_transcript=ENST00000850713.1;source_transcript_name=ASMTL-AS1-219;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850713.1,ENST00000850713.1;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000121;transcript_name=HG003_chrY_T0000121;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000121:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221909	1229619	.	+	.	source_transcript=ENST00000850713.1;source_transcript_name=ASMTL-AS1-219;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850713.1,ENST00000850713.1;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000121;transcript_name=HG003_chrY_T0000121;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000121:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229620	1230463	.	+	.	source_transcript=ENST00000850713.1;source_transcript_name=ASMTL-AS1-219;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000850713.1,ENST00000850713.1;transcript_id=HG003_chrY_T0000121;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000121;transcript_name=HG003_chrY_T0000121;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000121:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221782	1230905	1000	+	.	source_transcript=ENST00000711117.1;source_transcript_name=ASMTL-AS1-212;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711117.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711117.1,ENST00000711117.1;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_G0000031;transcript_name=HG003_chrY_T0000122;gene_name=ASMTL-AS1;ID=HG003_chrY_T0000122;Name=ASMTL-AS1
HG003_chrY	CAT	exon	1221782	1221908	.	+	.	source_transcript=ENST00000711117.1;source_transcript_name=ASMTL-AS1-212;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711117.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711117.1,ENST00000711117.1;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000122;transcript_name=HG003_chrY_T0000122;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000122:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221909	1229619	.	+	.	source_transcript=ENST00000711117.1;source_transcript_name=ASMTL-AS1-212;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711117.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711117.1,ENST00000711117.1;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000122;transcript_name=HG003_chrY_T0000122;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000122:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229620	1229765	.	+	.	source_transcript=ENST00000711117.1;source_transcript_name=ASMTL-AS1-212;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711117.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711117.1,ENST00000711117.1;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000122;transcript_name=HG003_chrY_T0000122;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000122:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229766	1230625	.	+	.	source_transcript=ENST00000711117.1;source_transcript_name=ASMTL-AS1-212;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711117.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711117.1,ENST00000711117.1;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000122;transcript_name=HG003_chrY_T0000122;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000122:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1230626	1230905	.	+	.	source_transcript=ENST00000711117.1;source_transcript_name=ASMTL-AS1-212;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711117.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711117.1,ENST00000711117.1;transcript_id=HG003_chrY_T0000122;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000122;transcript_name=HG003_chrY_T0000122;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000122:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221833	1230901	1000	+	.	source_transcript=ENST00000711116.1;source_transcript_name=ASMTL-AS1-211;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711116.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711116.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711116.1,ENST00000711116.1;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_G0000031;transcript_name=HG003_chrY_T0000123;gene_name=ASMTL-AS1;ID=HG003_chrY_T0000123;Name=ASMTL-AS1
HG003_chrY	CAT	exon	1221833	1221908	.	+	.	source_transcript=ENST00000711116.1;source_transcript_name=ASMTL-AS1-211;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711116.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711116.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711116.1,ENST00000711116.1;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000123;transcript_name=HG003_chrY_T0000123;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000123:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221909	1229667	.	+	.	source_transcript=ENST00000711116.1;source_transcript_name=ASMTL-AS1-211;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711116.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711116.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711116.1,ENST00000711116.1;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000123;transcript_name=HG003_chrY_T0000123;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000123:0;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229668	1229765	.	+	.	source_transcript=ENST00000711116.1;source_transcript_name=ASMTL-AS1-211;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711116.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711116.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711116.1,ENST00000711116.1;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000123;transcript_name=HG003_chrY_T0000123;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000123:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229766	1230640	.	+	.	source_transcript=ENST00000711116.1;source_transcript_name=ASMTL-AS1-211;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711116.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711116.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711116.1,ENST00000711116.1;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000123;transcript_name=HG003_chrY_T0000123;gene_name=ASMTL-AS1;ID=intron:HG003_chrY_T0000123:1;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1230641	1230901	.	+	.	source_transcript=ENST00000711116.1;source_transcript_name=ASMTL-AS1-211;source_gene=ENSG00000292331.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292331.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711116.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711116.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL-AS1;alternative_source_transcripts=ENST00000711116.1,ENST00000711116.1;transcript_id=HG003_chrY_T0000123;gene_id=HG003_chrY_G0000031;Parent=HG003_chrY_T0000123;transcript_name=HG003_chrY_T0000123;gene_name=ASMTL-AS1;ID=exon:HG003_chrY_T0000123:2;Name=ASMTL-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1221462	1271504	.	-	.	source_gene_common_name=ASMTL;source_gene=ENSG00000292339.1;gene_id=HG003_chrY_G0000032;gene_biotype=protein_coding;gene_name=ASMTL;gene_sources=liftoff,transMap,transMap_pairwise;ID=HG003_chrY_G0000032;Name=ASMTL
HG003_chrY	CAT	transcript	1221462	1271428	9980	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_G0000032;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=HG003_chrY_T0000116;Name=ASMTL
HG003_chrY	CAT	exon	1221462	1221812	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000116:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000116;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000116:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000116:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000116:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000116:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000116:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000116:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000116:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000116:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1253403	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253404	1253468	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1253404	1253468	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000116:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1253469	1256805	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1256806	1256853	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1256806	1256853	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000116:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1256854	1259894	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1259895	1260026	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1259895	1259945	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000116:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1259943	1259945	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000116;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1260027	1271093	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1271094	1271230	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1271231	1271420	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=intron:HG003_chrY_T0000116:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1271421	1271428	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000116;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000116;transcript_name=HG003_chrY_T0000116;gene_name=ASMTL;ID=exon:HG003_chrY_T0000116:13;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221462	1270385	100	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_G0000032;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=HG003_chrY_T0000117;Name=ASMTL
HG003_chrY	CAT	exon	1221462	1221812	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000117;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=intron:HG003_chrY_T0000117:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=intron:HG003_chrY_T0000117:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=intron:HG003_chrY_T0000117:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=intron:HG003_chrY_T0000117:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=intron:HG003_chrY_T0000117:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=intron:HG003_chrY_T0000117:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=intron:HG003_chrY_T0000117:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=intron:HG003_chrY_T0000117:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1253403	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=intron:HG003_chrY_T0000117:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253404	1253468	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1253404	1253468	.	-	0	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1253469	1256805	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=intron:HG003_chrY_T0000117:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1256806	1256853	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1256806	1256853	.	-	0	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1256854	1259894	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=intron:HG003_chrY_T0000117:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1259895	1260026	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1259895	1260026	.	-	0	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1260027	1270223	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=intron:HG003_chrY_T0000117:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1270224	1270385	.	-	.	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=exon:HG003_chrY_T0000117:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1270224	1270316	.	-	0	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000117:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1270314	1270316	.	-	0	source_transcript=ENST00000711197.1;source_transcript_name=ASMTL-212;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711197.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711197.1,ENST00000711197.1;transcript_id=HG003_chrY_T0000117;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000117;transcript_name=HG003_chrY_T0000117;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000117;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221462	1271504	9980	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_G0000032;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=HG003_chrY_T0000118;Name=ASMTL
HG003_chrY	CAT	exon	1221462	1221812	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000118:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000118;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000118:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000118:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000118:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000118:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000118:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000118:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000118:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000118:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1253403	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253404	1253468	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1253404	1253468	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000118:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1253469	1256805	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1256806	1256853	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1256806	1256853	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000118:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1256854	1259894	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1259895	1260026	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1259895	1259945	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000118:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1259943	1259945	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000118;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1260027	1271093	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1271094	1271214	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1271215	1271480	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=intron:HG003_chrY_T0000118:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1271481	1271504	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000711192.1;transcript_score=299.764;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000118;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000118;transcript_name=HG003_chrY_T0000118;gene_name=ASMTL;ID=exon:HG003_chrY_T0000118:13;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221462	1271238	100	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_G0000032;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=HG003_chrY_T0000119;Name=ASMTL
HG003_chrY	CAT	exon	1221462	1221812	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000119:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000119;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=intron:HG003_chrY_T0000119:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000119:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=intron:HG003_chrY_T0000119:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000119:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=intron:HG003_chrY_T0000119:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000119:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=intron:HG003_chrY_T0000119:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000119:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=intron:HG003_chrY_T0000119:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000119:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=intron:HG003_chrY_T0000119:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000119:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=intron:HG003_chrY_T0000119:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000119:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=intron:HG003_chrY_T0000119:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000119:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1253403	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=intron:HG003_chrY_T0000119:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253404	1253468	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1253404	1253468	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000119:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1253469	1256805	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=intron:HG003_chrY_T0000119:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1256806	1256853	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1256806	1256853	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000119:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1256854	1259894	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=intron:HG003_chrY_T0000119:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1259895	1260026	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1259895	1259945	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000119:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1259943	1259945	.	-	0	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000119;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1260027	1271093	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=intron:HG003_chrY_T0000119:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1271094	1271238	.	-	.	source_transcript=ENST00000711192.1;source_transcript_name=ASMTL-207;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711192.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;transcript_id=HG003_chrY_T0000119;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000119;transcript_name=HG003_chrY_T0000119;gene_name=ASMTL;ID=exon:HG003_chrY_T0000119:12;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1221464	1270405	100	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_G0000032;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=HG003_chrY_T0000120;Name=ASMTL
HG003_chrY	CAT	exon	1221464	1221812	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=exon:HG003_chrY_T0000120:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1221592	1221812	.	-	2	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000120:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1221592	1221594	.	-	0	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=stop_codon:HG003_chrY_T0000120;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1221813	1229608	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=intron:HG003_chrY_T0000120:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1229609	1229731	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=exon:HG003_chrY_T0000120:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1229609	1229731	.	-	2	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000120:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1229732	1234862	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=intron:HG003_chrY_T0000120:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1234863	1235006	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=exon:HG003_chrY_T0000120:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1234863	1235006	.	-	2	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000120:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1235007	1235871	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=intron:HG003_chrY_T0000120:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1235872	1236004	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=exon:HG003_chrY_T0000120:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1235872	1236004	.	-	0	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000120:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1236005	1238560	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=intron:HG003_chrY_T0000120:3;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1238561	1238745	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=exon:HG003_chrY_T0000120:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1238561	1238745	.	-	2	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000120:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1238746	1242427	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=intron:HG003_chrY_T0000120:4;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1242428	1242590	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=exon:HG003_chrY_T0000120:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1242428	1242590	.	-	0	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000120:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1242591	1244636	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=intron:HG003_chrY_T0000120:5;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1244637	1245024	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=exon:HG003_chrY_T0000120:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1244637	1245024	.	-	1	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000120:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=intron:HG003_chrY_T0000120:6;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=exon:HG003_chrY_T0000120:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1249171	1249279	.	-	2	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000120:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=intron:HG003_chrY_T0000120:7;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=exon:HG003_chrY_T0000120:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1252733	1252794	.	-	1	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000120:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1253403	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=intron:HG003_chrY_T0000120:8;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253404	1253468	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=exon:HG003_chrY_T0000120:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1253404	1253468	.	-	0	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000120:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1253469	1259894	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=intron:HG003_chrY_T0000120:9;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1259895	1260026	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=exon:HG003_chrY_T0000120:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1259895	1260026	.	-	0	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000120:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1260027	1270223	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=intron:HG003_chrY_T0000120:10;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1270224	1270405	.	-	.	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=exon:HG003_chrY_T0000120:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1270224	1270316	.	-	0	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=CDS:HG003_chrY_T0000120:11;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1270314	1270316	.	-	0	source_transcript=ENST00000711196.1;source_transcript_name=ASMTL-211;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711196.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711196.1,ENST00000711196.1;transcript_id=HG003_chrY_T0000120;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000120;transcript_name=HG003_chrY_T0000120;gene_name=ASMTL;ID=start_codon:HG003_chrY_T0000120;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1244630	1253101	1000	-	.	source_transcript=ENST00000711195.1;source_transcript_name=ASMTL-210;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711195.1;transcript_score=299.543;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711195.1,ENST00000711195.1;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_G0000032;transcript_name=HG003_chrY_T0000124;gene_name=ASMTL;ID=HG003_chrY_T0000124;Name=ASMTL
HG003_chrY	CAT	exon	1244630	1245024	.	-	.	source_transcript=ENST00000711195.1;source_transcript_name=ASMTL-210;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711195.1;transcript_score=299.543;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711195.1,ENST00000711195.1;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000124;transcript_name=HG003_chrY_T0000124;gene_name=ASMTL;ID=exon:HG003_chrY_T0000124:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1245025	1249170	.	-	.	source_transcript=ENST00000711195.1;source_transcript_name=ASMTL-210;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711195.1;transcript_score=299.543;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711195.1,ENST00000711195.1;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000124;transcript_name=HG003_chrY_T0000124;gene_name=ASMTL;ID=intron:HG003_chrY_T0000124:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1249171	1249279	.	-	.	source_transcript=ENST00000711195.1;source_transcript_name=ASMTL-210;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711195.1;transcript_score=299.543;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711195.1,ENST00000711195.1;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000124;transcript_name=HG003_chrY_T0000124;gene_name=ASMTL;ID=exon:HG003_chrY_T0000124:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=ENST00000711195.1;source_transcript_name=ASMTL-210;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711195.1;transcript_score=299.543;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711195.1,ENST00000711195.1;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000124;transcript_name=HG003_chrY_T0000124;gene_name=ASMTL;ID=intron:HG003_chrY_T0000124:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1253101	.	-	.	source_transcript=ENST00000711195.1;source_transcript_name=ASMTL-210;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711195.1;transcript_score=299.543;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711195.1,ENST00000711195.1;transcript_id=HG003_chrY_T0000124;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000124;transcript_name=HG003_chrY_T0000124;gene_name=ASMTL;ID=exon:HG003_chrY_T0000124:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1248804	1253438	1000	-	.	source_transcript=ENST00000711194.1;source_transcript_name=ASMTL-209;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711194.1;transcript_score=299.825;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711194.1,ENST00000711194.1;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_G0000032;transcript_name=HG003_chrY_T0000125;gene_name=ASMTL;ID=HG003_chrY_T0000125;Name=ASMTL
HG003_chrY	CAT	exon	1248804	1249279	.	-	.	source_transcript=ENST00000711194.1;source_transcript_name=ASMTL-209;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711194.1;transcript_score=299.825;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711194.1,ENST00000711194.1;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000125;transcript_name=HG003_chrY_T0000125;gene_name=ASMTL;ID=exon:HG003_chrY_T0000125:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1249280	1252732	.	-	.	source_transcript=ENST00000711194.1;source_transcript_name=ASMTL-209;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711194.1;transcript_score=299.825;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711194.1,ENST00000711194.1;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000125;transcript_name=HG003_chrY_T0000125;gene_name=ASMTL;ID=intron:HG003_chrY_T0000125:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1252733	1252794	.	-	.	source_transcript=ENST00000711194.1;source_transcript_name=ASMTL-209;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711194.1;transcript_score=299.825;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711194.1,ENST00000711194.1;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000125;transcript_name=HG003_chrY_T0000125;gene_name=ASMTL;ID=exon:HG003_chrY_T0000125:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1252795	1253403	.	-	.	source_transcript=ENST00000711194.1;source_transcript_name=ASMTL-209;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711194.1;transcript_score=299.825;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711194.1,ENST00000711194.1;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000125;transcript_name=HG003_chrY_T0000125;gene_name=ASMTL;ID=intron:HG003_chrY_T0000125:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1253404	1253438	.	-	.	source_transcript=ENST00000711194.1;source_transcript_name=ASMTL-209;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711194.1;transcript_score=299.825;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711194.1,ENST00000711194.1;transcript_id=HG003_chrY_T0000125;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000125;transcript_name=HG003_chrY_T0000125;gene_name=ASMTL;ID=exon:HG003_chrY_T0000125:2;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1259301	1270348	1000	-	.	source_transcript=ENST00000711193.1;source_transcript_name=ASMTL-208;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711193.1;transcript_score=299.882;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711193.1,ENST00000711193.1;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_G0000032;transcript_name=HG003_chrY_T0000126;gene_name=ASMTL;ID=HG003_chrY_T0000126;Name=ASMTL
HG003_chrY	CAT	exon	1259301	1260026	.	-	.	source_transcript=ENST00000711193.1;source_transcript_name=ASMTL-208;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711193.1;transcript_score=299.882;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711193.1,ENST00000711193.1;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000126;transcript_name=HG003_chrY_T0000126;gene_name=ASMTL;ID=exon:HG003_chrY_T0000126:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1260027	1270223	.	-	.	source_transcript=ENST00000711193.1;source_transcript_name=ASMTL-208;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711193.1;transcript_score=299.882;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711193.1,ENST00000711193.1;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000126;transcript_name=HG003_chrY_T0000126;gene_name=ASMTL;ID=intron:HG003_chrY_T0000126:0;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1270224	1270348	.	-	.	source_transcript=ENST00000711193.1;source_transcript_name=ASMTL-208;source_gene=ENSG00000292339.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292339.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711193.1;transcript_score=299.882;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMTL;alternative_source_transcripts=ENST00000711193.1,ENST00000711193.1;transcript_id=HG003_chrY_T0000126;gene_id=HG003_chrY_G0000032;Parent=HG003_chrY_T0000126;transcript_name=HG003_chrY_T0000126;gene_name=ASMTL;ID=exon:HG003_chrY_T0000126:1;Name=ASMTL;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1280448	1356010	.	-	.	source_gene_common_name=P2RY8;source_gene=ENSG00000292333.1;alternative_source_transcripts=ENST00000711216.1,ENST00000711216.1;gene_id=HG003_chrY_G0000033;gene_biotype=protein_coding;gene_name=P2RY8;gene_sources=liftoff;ID=HG003_chrY_G0000033;Name=P2RY8
HG003_chrY	CAT	transcript	1280448	1356010	100	-	.	source_transcript=ENST00000711216.1;source_transcript_name=P2RY8-204;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711216.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711216.1,ENST00000711216.1;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_G0000033;transcript_name=HG003_chrY_T0000127;gene_name=P2RY8;ID=HG003_chrY_T0000127;Name=P2RY8
HG003_chrY	CAT	exon	1280448	1284447	.	-	.	source_transcript=ENST00000711216.1;source_transcript_name=P2RY8-204;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711216.1,ENST00000711216.1;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000127;transcript_name=HG003_chrY_T0000127;gene_name=P2RY8;ID=exon:HG003_chrY_T0000127:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1283344	1284423	.	-	0	source_transcript=ENST00000711216.1;source_transcript_name=P2RY8-204;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711216.1,ENST00000711216.1;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000127;transcript_name=HG003_chrY_T0000127;gene_name=P2RY8;ID=CDS:HG003_chrY_T0000127:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1283344	1283346	.	-	0	source_transcript=ENST00000711216.1;source_transcript_name=P2RY8-204;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711216.1,ENST00000711216.1;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000127;transcript_name=HG003_chrY_T0000127;gene_name=P2RY8;ID=stop_codon:HG003_chrY_T0000127;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1284421	1284423	.	-	0	source_transcript=ENST00000711216.1;source_transcript_name=P2RY8-204;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711216.1,ENST00000711216.1;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000127;transcript_name=HG003_chrY_T0000127;gene_name=P2RY8;ID=start_codon:HG003_chrY_T0000127;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1284448	1355745	.	-	.	source_transcript=ENST00000711216.1;source_transcript_name=P2RY8-204;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711216.1,ENST00000711216.1;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000127;transcript_name=HG003_chrY_T0000127;gene_name=P2RY8;ID=intron:HG003_chrY_T0000127:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1355746	1356010	.	-	.	source_transcript=ENST00000711216.1;source_transcript_name=P2RY8-204;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711216.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711216.1,ENST00000711216.1;transcript_id=HG003_chrY_T0000127;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000127;transcript_name=HG003_chrY_T0000127;gene_name=P2RY8;ID=exon:HG003_chrY_T0000127:1;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1284302	1312895	100	-	.	source_transcript=ENST00000711215.1;source_transcript_name=P2RY8-203;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711215.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711215.1,ENST00000711215.1;transcript_id=HG003_chrY_T0000128;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_G0000033;transcript_name=HG003_chrY_T0000128;gene_name=P2RY8;ID=HG003_chrY_T0000128;Name=P2RY8
HG003_chrY	CAT	exon	1284302	1284447	.	-	.	source_transcript=ENST00000711215.1;source_transcript_name=P2RY8-203;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711215.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711215.1,ENST00000711215.1;transcript_id=HG003_chrY_T0000128;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000128;transcript_name=HG003_chrY_T0000128;gene_name=P2RY8;ID=exon:HG003_chrY_T0000128:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1284302	1284423	.	-	0	source_transcript=ENST00000711215.1;source_transcript_name=P2RY8-203;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711215.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711215.1,ENST00000711215.1;transcript_id=HG003_chrY_T0000128;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000128;transcript_name=HG003_chrY_T0000128;gene_name=P2RY8;ID=CDS:HG003_chrY_T0000128:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1284421	1284423	.	-	0	source_transcript=ENST00000711215.1;source_transcript_name=P2RY8-203;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711215.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711215.1,ENST00000711215.1;transcript_id=HG003_chrY_T0000128;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000128;transcript_name=HG003_chrY_T0000128;gene_name=P2RY8;ID=start_codon:HG003_chrY_T0000128;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1284448	1312634	.	-	.	source_transcript=ENST00000711215.1;source_transcript_name=P2RY8-203;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711215.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711215.1,ENST00000711215.1;transcript_id=HG003_chrY_T0000128;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000128;transcript_name=HG003_chrY_T0000128;gene_name=P2RY8;ID=intron:HG003_chrY_T0000128:0;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1312635	1312895	.	-	.	source_transcript=ENST00000711215.1;source_transcript_name=P2RY8-203;source_gene=ENSG00000292333.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292333.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711215.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=P2RY8;alternative_source_transcripts=ENST00000711215.1,ENST00000711215.1;transcript_id=HG003_chrY_T0000128;gene_id=HG003_chrY_G0000033;Parent=HG003_chrY_T0000128;transcript_name=HG003_chrY_T0000128;gene_name=P2RY8;ID=exon:HG003_chrY_T0000128:1;Name=P2RY8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1371556	1383824	.	-	.	source_gene_common_name=ENSG00000310546;source_gene=ENSG00000310546.1;alternative_source_transcripts=ENST00000850708.1,ENST00000850708.1;gene_id=HG003_chrY_G0000034;gene_biotype=lncRNA;gene_name=ENSG00000310546;gene_sources=liftoff;ID=HG003_chrY_G0000034;Name=ENSG00000310546
HG003_chrY	CAT	transcript	1371556	1383824	1000	-	.	source_transcript=ENST00000850708.1;source_transcript_name=ENST00000850708;source_gene=ENSG00000310546.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310546.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850708.1;transcript_score=299.86;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310546;alternative_source_transcripts=ENST00000850708.1,ENST00000850708.1;transcript_id=HG003_chrY_T0000129;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_G0000034;transcript_name=HG003_chrY_T0000129;gene_name=ENSG00000310546;ID=HG003_chrY_T0000129;Name=ENSG00000310546
HG003_chrY	CAT	exon	1371556	1372169	.	-	.	source_transcript=ENST00000850708.1;source_transcript_name=ENST00000850708;source_gene=ENSG00000310546.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310546.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850708.1;transcript_score=299.86;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310546;alternative_source_transcripts=ENST00000850708.1,ENST00000850708.1;transcript_id=HG003_chrY_T0000129;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000129;transcript_name=HG003_chrY_T0000129;gene_name=ENSG00000310546;ID=exon:HG003_chrY_T0000129:0;Name=ENSG00000310546;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1372170	1383722	.	-	.	source_transcript=ENST00000850708.1;source_transcript_name=ENST00000850708;source_gene=ENSG00000310546.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310546.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850708.1;transcript_score=299.86;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310546;alternative_source_transcripts=ENST00000850708.1,ENST00000850708.1;transcript_id=HG003_chrY_T0000129;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000129;transcript_name=HG003_chrY_T0000129;gene_name=ENSG00000310546;ID=intron:HG003_chrY_T0000129:0;Name=ENSG00000310546;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1383723	1383824	.	-	.	source_transcript=ENST00000850708.1;source_transcript_name=ENST00000850708;source_gene=ENSG00000310546.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310546.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850708.1;transcript_score=299.86;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310546;alternative_source_transcripts=ENST00000850708.1,ENST00000850708.1;transcript_id=HG003_chrY_T0000129;gene_id=HG003_chrY_G0000034;Parent=HG003_chrY_T0000129;transcript_name=HG003_chrY_T0000129;gene_name=ENSG00000310546;ID=exon:HG003_chrY_T0000129:1;Name=ENSG00000310546;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1410481	1421138	.	+	.	source_gene_common_name=AKAP17A;source_gene=ENSG00000292343.1;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;gene_id=HG003_chrY_G0000035;gene_biotype=protein_coding;gene_name=AKAP17A;gene_sources=liftoff;ID=HG003_chrY_G0000035;Name=AKAP17A
HG003_chrY	CAT	transcript	1410481	1421138	100	+	.	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_G0000035;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=HG003_chrY_T0000130;Name=AKAP17A
HG003_chrY	CAT	exon	1410481	1410646	.	+	.	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000130:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1410647	1412320	.	+	.	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000130:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1412321	1413101	.	+	.	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000130:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1412340	1413101	.	+	0	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000130:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1412340	1412342	.	+	0	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=start_codon:HG003_chrY_T0000130;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1413102	1414253	.	+	.	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000130:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1414254	1414402	.	+	.	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000130:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1414254	1414402	.	+	0	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000130:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1414403	1417809	.	+	.	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000130:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1417810	1418050	.	+	.	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000130:3;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1417810	1418050	.	+	1	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000130:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1418051	1419276	.	+	.	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000130:3;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1419277	1421138	.	+	.	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000130:4;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1419277	1420212	.	+	0	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000130:3;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1420210	1420212	.	+	0	source_transcript=ENST00000711132.1;source_transcript_name=AKAP17A-204;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711132.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711132.1,ENST00000711132.1;transcript_id=HG003_chrY_T0000130;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000130;transcript_name=HG003_chrY_T0000130;gene_name=AKAP17A;ID=stop_codon:HG003_chrY_T0000130;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1410500	1421120	1000	+	.	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_G0000035;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=HG003_chrY_T0000131;Name=AKAP17A
HG003_chrY	CAT	exon	1410500	1410646	.	+	.	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000131:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1410647	1412320	.	+	.	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000131:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1412321	1413101	.	+	.	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000131:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1412340	1413101	.	+	0	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000131:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1412340	1412342	.	+	0	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=start_codon:HG003_chrY_T0000131;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1413102	1414253	.	+	.	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000131:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1414254	1414402	.	+	.	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000131:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1414254	1414402	.	+	0	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000131:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1414403	1417809	.	+	.	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000131:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1417810	1418050	.	+	.	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000131:3;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1417810	1418050	.	+	1	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000131:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1418051	1418755	.	+	.	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000131:3;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1418756	1418825	.	+	.	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000131:4;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1418756	1418761	.	+	0	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000131:3;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1418759	1418761	.	+	0	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=stop_codon:HG003_chrY_T0000131;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1418826	1419276	.	+	.	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000131:4;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1419277	1421120	.	+	.	source_transcript=ENST00000711186.1;source_transcript_name=AKAP17A-206;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711186.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711186.1;transcript_score=299.969;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711186.1,ENST00000711186.1;transcript_id=HG003_chrY_T0000131;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000131;transcript_name=HG003_chrY_T0000131;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000131:5;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1410502	1418921	100	+	.	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_G0000035;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=HG003_chrY_T0000132;Name=AKAP17A
HG003_chrY	CAT	exon	1410502	1410646	.	+	.	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000132;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000132:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1410647	1412320	.	+	.	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000132;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000132:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1412321	1413101	.	+	.	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000132;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000132:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1412340	1413101	.	+	0	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000132;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000132:0;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1412340	1412342	.	+	0	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000132;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=start_codon:HG003_chrY_T0000132;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1413102	1414253	.	+	.	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000132;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000132:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1414254	1414402	.	+	.	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000132;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000132:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1414254	1414402	.	+	0	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000132;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000132:1;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1414403	1417809	.	+	.	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000132;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=intron:HG003_chrY_T0000132:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1417810	1418921	.	+	.	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000132;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=exon:HG003_chrY_T0000132:3;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1417810	1418239	.	+	1	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000132;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=CDS:HG003_chrY_T0000132:2;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1418237	1418239	.	+	0	source_transcript=ENST00000711185.1;source_transcript_name=AKAP17A-205;source_gene=ENSG00000292343.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292343.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711185.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711185.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AKAP17A;alternative_source_transcripts=ENST00000711185.1,ENST00000711185.1;transcript_id=HG003_chrY_T0000132;gene_id=HG003_chrY_G0000035;Parent=HG003_chrY_T0000132;transcript_name=HG003_chrY_T0000132;gene_name=AKAP17A;ID=stop_codon:HG003_chrY_T0000132;Name=AKAP17A;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1433307	1457366	.	+	.	source_gene_common_name=ASMT;source_gene=ENSG00000292336.1;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;gene_id=HG003_chrY_G0000036;gene_biotype=protein_coding;gene_name=ASMT;gene_sources=liftoff;ID=HG003_chrY_G0000036;Name=ASMT
HG003_chrY	CAT	transcript	1433307	1457366	100	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_G0000036;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=HG003_chrY_T0000133;Name=ASMT
HG003_chrY	CAT	exon	1433307	1433516	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=exon:HG003_chrY_T0000133:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1433448	1433516	.	+	0	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=CDS:HG003_chrY_T0000133:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1433448	1433450	.	+	0	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=start_codon:HG003_chrY_T0000133;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1433517	1441386	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=intron:HG003_chrY_T0000133:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1441387	1441561	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=exon:HG003_chrY_T0000133:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1441387	1441561	.	+	0	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=CDS:HG003_chrY_T0000133:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1441562	1442516	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=intron:HG003_chrY_T0000133:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1442517	1442646	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=exon:HG003_chrY_T0000133:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1442517	1442646	.	+	2	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=CDS:HG003_chrY_T0000133:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1442647	1445936	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=intron:HG003_chrY_T0000133:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1445937	1446005	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=exon:HG003_chrY_T0000133:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1445937	1446005	.	+	1	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=CDS:HG003_chrY_T0000133:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1446006	1448055	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=intron:HG003_chrY_T0000133:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1448056	1448174	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=exon:HG003_chrY_T0000133:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1448056	1448174	.	+	1	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=CDS:HG003_chrY_T0000133:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1448175	1450938	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=intron:HG003_chrY_T0000133:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1450939	1451022	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=exon:HG003_chrY_T0000133:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1450939	1451022	.	+	2	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=CDS:HG003_chrY_T0000133:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1451023	1451384	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=intron:HG003_chrY_T0000133:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1451385	1451525	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=exon:HG003_chrY_T0000133:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1451385	1451525	.	+	2	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=CDS:HG003_chrY_T0000133:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1451526	1454673	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=intron:HG003_chrY_T0000133:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1454674	1454796	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=exon:HG003_chrY_T0000133:7;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1454674	1454796	.	+	2	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=CDS:HG003_chrY_T0000133:7;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1454797	1457087	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=intron:HG003_chrY_T0000133:7;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1457088	1457366	.	+	.	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=exon:HG003_chrY_T0000133:8;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1457088	1457299	.	+	2	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=CDS:HG003_chrY_T0000133:8;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1457297	1457299	.	+	0	source_transcript=ENST00000711210.1;source_transcript_name=ASMT-210;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711210.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711210.1,ENST00000711210.1;transcript_id=HG003_chrY_T0000133;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000133;transcript_name=HG003_chrY_T0000133;gene_name=ASMT;ID=stop_codon:HG003_chrY_T0000133;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1433412	1457312	100	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_G0000036;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=HG003_chrY_T0000134;Name=ASMT
HG003_chrY	CAT	exon	1433412	1433516	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=exon:HG003_chrY_T0000134:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1433448	1433516	.	+	0	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=CDS:HG003_chrY_T0000134:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1433448	1433450	.	+	0	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=start_codon:HG003_chrY_T0000134;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1433517	1441386	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=intron:HG003_chrY_T0000134:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1441387	1441561	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=exon:HG003_chrY_T0000134:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1441387	1441561	.	+	0	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=CDS:HG003_chrY_T0000134:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1441562	1442516	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=intron:HG003_chrY_T0000134:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1442517	1442646	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=exon:HG003_chrY_T0000134:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1442517	1442646	.	+	2	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=CDS:HG003_chrY_T0000134:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1442647	1445936	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=intron:HG003_chrY_T0000134:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1445937	1446005	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=exon:HG003_chrY_T0000134:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1445937	1446005	.	+	1	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=CDS:HG003_chrY_T0000134:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1446006	1448055	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=intron:HG003_chrY_T0000134:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1448056	1448174	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=exon:HG003_chrY_T0000134:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1448056	1448174	.	+	1	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=CDS:HG003_chrY_T0000134:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1448175	1451384	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=intron:HG003_chrY_T0000134:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1451385	1451525	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=exon:HG003_chrY_T0000134:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1451385	1451525	.	+	2	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=CDS:HG003_chrY_T0000134:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1451526	1454673	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=intron:HG003_chrY_T0000134:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1454674	1454796	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=exon:HG003_chrY_T0000134:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1454674	1454796	.	+	2	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=CDS:HG003_chrY_T0000134:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1454797	1457087	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=intron:HG003_chrY_T0000134:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1457088	1457312	.	+	.	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=exon:HG003_chrY_T0000134:7;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1457088	1457299	.	+	2	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=CDS:HG003_chrY_T0000134:7;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1457297	1457299	.	+	0	source_transcript=ENST00000711209.1;source_transcript_name=ASMT-209;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711209.1,ENST00000711209.1;transcript_id=HG003_chrY_T0000134;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000134;transcript_name=HG003_chrY_T0000134;gene_name=ASMT;ID=stop_codon:HG003_chrY_T0000134;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1433423	1457366	100	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_G0000036;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=HG003_chrY_T0000135;Name=ASMT
HG003_chrY	CAT	exon	1433423	1433516	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=exon:HG003_chrY_T0000135:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1433448	1433516	.	+	0	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=CDS:HG003_chrY_T0000135:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1433448	1433450	.	+	0	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=start_codon:HG003_chrY_T0000135;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1433517	1441386	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=intron:HG003_chrY_T0000135:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1441387	1441561	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=exon:HG003_chrY_T0000135:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1441387	1441561	.	+	0	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=CDS:HG003_chrY_T0000135:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1441562	1442516	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=intron:HG003_chrY_T0000135:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1442517	1442646	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=exon:HG003_chrY_T0000135:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1442517	1442646	.	+	2	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=CDS:HG003_chrY_T0000135:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1442647	1445936	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=intron:HG003_chrY_T0000135:2;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1445937	1446005	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=exon:HG003_chrY_T0000135:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1445937	1446005	.	+	1	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=CDS:HG003_chrY_T0000135:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1446006	1448055	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=intron:HG003_chrY_T0000135:3;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1448056	1448174	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=exon:HG003_chrY_T0000135:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1448056	1448174	.	+	1	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=CDS:HG003_chrY_T0000135:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1448175	1454673	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=intron:HG003_chrY_T0000135:4;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1454674	1454796	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=exon:HG003_chrY_T0000135:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1454674	1454796	.	+	2	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=CDS:HG003_chrY_T0000135:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1454797	1457087	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=intron:HG003_chrY_T0000135:5;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1457088	1457366	.	+	.	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=exon:HG003_chrY_T0000135:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1457088	1457299	.	+	2	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=CDS:HG003_chrY_T0000135:6;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1457297	1457299	.	+	0	source_transcript=ENST00000711208.1;source_transcript_name=ASMT-208;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711208.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711208.1,ENST00000711208.1;transcript_id=HG003_chrY_T0000135;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000135;transcript_name=HG003_chrY_T0000135;gene_name=ASMT;ID=stop_codon:HG003_chrY_T0000135;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1445980	1454699	1000	+	.	source_transcript=ENST00000711207.1;source_transcript_name=ASMT-207;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711207.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711207.1;transcript_score=299.608;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711207.1,ENST00000711207.1;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_G0000036;transcript_name=HG003_chrY_T0000136;gene_name=ASMT;ID=HG003_chrY_T0000136;Name=ASMT
HG003_chrY	CAT	exon	1445980	1446267	.	+	.	source_transcript=ENST00000711207.1;source_transcript_name=ASMT-207;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711207.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711207.1;transcript_score=299.608;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711207.1,ENST00000711207.1;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000136;transcript_name=HG003_chrY_T0000136;gene_name=ASMT;ID=exon:HG003_chrY_T0000136:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1446268	1454477	.	+	.	source_transcript=ENST00000711207.1;source_transcript_name=ASMT-207;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711207.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711207.1;transcript_score=299.608;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711207.1,ENST00000711207.1;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000136;transcript_name=HG003_chrY_T0000136;gene_name=ASMT;ID=intron:HG003_chrY_T0000136:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1454478	1454699	.	+	.	source_transcript=ENST00000711207.1;source_transcript_name=ASMT-207;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711207.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711207.1;transcript_score=299.608;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711207.1,ENST00000711207.1;transcript_id=HG003_chrY_T0000136;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000136;transcript_name=HG003_chrY_T0000136;gene_name=ASMT;ID=exon:HG003_chrY_T0000136:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1454634	1457366	100	+	.	source_transcript=ENST00000711206.1;source_transcript_name=ASMT-206;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711206.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711206.1,ENST00000711206.1;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_G0000036;transcript_name=HG003_chrY_T0000137;gene_name=ASMT;ID=HG003_chrY_T0000137;Name=ASMT
HG003_chrY	CAT	exon	1454634	1454796	.	+	.	source_transcript=ENST00000711206.1;source_transcript_name=ASMT-206;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711206.1,ENST00000711206.1;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000137;transcript_name=HG003_chrY_T0000137;gene_name=ASMT;ID=exon:HG003_chrY_T0000137:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1454634	1454796	.	+	0	source_transcript=ENST00000711206.1;source_transcript_name=ASMT-206;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711206.1,ENST00000711206.1;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000137;transcript_name=HG003_chrY_T0000137;gene_name=ASMT;ID=CDS:HG003_chrY_T0000137:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1454797	1457087	.	+	.	source_transcript=ENST00000711206.1;source_transcript_name=ASMT-206;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711206.1,ENST00000711206.1;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000137;transcript_name=HG003_chrY_T0000137;gene_name=ASMT;ID=intron:HG003_chrY_T0000137:0;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1457088	1457366	.	+	.	source_transcript=ENST00000711206.1;source_transcript_name=ASMT-206;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711206.1,ENST00000711206.1;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000137;transcript_name=HG003_chrY_T0000137;gene_name=ASMT;ID=exon:HG003_chrY_T0000137:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1457088	1457299	.	+	2	source_transcript=ENST00000711206.1;source_transcript_name=ASMT-206;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711206.1,ENST00000711206.1;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000137;transcript_name=HG003_chrY_T0000137;gene_name=ASMT;ID=CDS:HG003_chrY_T0000137:1;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1457297	1457299	.	+	0	source_transcript=ENST00000711206.1;source_transcript_name=ASMT-206;source_gene=ENSG00000292336.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292336.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711206.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASMT;alternative_source_transcripts=ENST00000711206.1,ENST00000711206.1;transcript_id=HG003_chrY_T0000137;gene_id=HG003_chrY_G0000036;Parent=HG003_chrY_T0000137;transcript_name=HG003_chrY_T0000137;gene_name=ASMT;ID=stop_codon:HG003_chrY_T0000137;Name=ASMT;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1472221	1577844	.	+	.	source_gene_common_name=LINC02968;source_gene=ENSG00000310540.2;alternative_source_transcripts=ENST00000850741.1,ENST00000850741.1;gene_id=HG003_chrY_G0000037;gene_biotype=lncRNA;gene_name=LINC02968;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000037;Name=LINC02968
HG003_chrY	CAT	transcript	1472221	1545215	1000	+	.	source_transcript=ENST00000850741.1;source_transcript_name=LINC02968-237;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850741.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850741.1,ENST00000850741.1;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000138;gene_name=LINC02968;ID=HG003_chrY_T0000138;Name=LINC02968
HG003_chrY	CAT	exon	1472221	1472357	.	+	.	source_transcript=ENST00000850741.1;source_transcript_name=LINC02968-237;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850741.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850741.1,ENST00000850741.1;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000138;transcript_name=HG003_chrY_T0000138;gene_name=LINC02968;ID=exon:HG003_chrY_T0000138:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1472358	1540230	.	+	.	source_transcript=ENST00000850741.1;source_transcript_name=LINC02968-237;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850741.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850741.1,ENST00000850741.1;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000138;transcript_name=HG003_chrY_T0000138;gene_name=LINC02968;ID=intron:HG003_chrY_T0000138:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540231	1540318	.	+	.	source_transcript=ENST00000850741.1;source_transcript_name=LINC02968-237;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850741.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850741.1,ENST00000850741.1;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000138;transcript_name=HG003_chrY_T0000138;gene_name=LINC02968;ID=exon:HG003_chrY_T0000138:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1540319	1545049	.	+	.	source_transcript=ENST00000850741.1;source_transcript_name=LINC02968-237;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850741.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850741.1,ENST00000850741.1;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000138;transcript_name=HG003_chrY_T0000138;gene_name=LINC02968;ID=intron:HG003_chrY_T0000138:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1545050	1545215	.	+	.	source_transcript=ENST00000850741.1;source_transcript_name=LINC02968-237;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850741.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850741.1,ENST00000850741.1;transcript_id=HG003_chrY_T0000138;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000138;transcript_name=HG003_chrY_T0000138;gene_name=LINC02968;ID=exon:HG003_chrY_T0000138:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1472226	1565987	1000	+	.	source_transcript=ENST00000850739.1;source_transcript_name=LINC02968-235;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850739.1;transcript_score=299.757;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850739.1,ENST00000850739.1;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000139;gene_name=LINC02968;ID=HG003_chrY_T0000139;Name=LINC02968
HG003_chrY	CAT	exon	1472226	1472357	.	+	.	source_transcript=ENST00000850739.1;source_transcript_name=LINC02968-235;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850739.1;transcript_score=299.757;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850739.1,ENST00000850739.1;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000139;transcript_name=HG003_chrY_T0000139;gene_name=LINC02968;ID=exon:HG003_chrY_T0000139:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1472358	1540230	.	+	.	source_transcript=ENST00000850739.1;source_transcript_name=LINC02968-235;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850739.1;transcript_score=299.757;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850739.1,ENST00000850739.1;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000139;transcript_name=HG003_chrY_T0000139;gene_name=LINC02968;ID=intron:HG003_chrY_T0000139:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540231	1540318	.	+	.	source_transcript=ENST00000850739.1;source_transcript_name=LINC02968-235;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850739.1;transcript_score=299.757;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850739.1,ENST00000850739.1;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000139;transcript_name=HG003_chrY_T0000139;gene_name=LINC02968;ID=exon:HG003_chrY_T0000139:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1540319	1565795	.	+	.	source_transcript=ENST00000850739.1;source_transcript_name=LINC02968-235;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850739.1;transcript_score=299.757;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850739.1,ENST00000850739.1;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000139;transcript_name=HG003_chrY_T0000139;gene_name=LINC02968;ID=intron:HG003_chrY_T0000139:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1565796	1565987	.	+	.	source_transcript=ENST00000850739.1;source_transcript_name=LINC02968-235;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850739.1;transcript_score=299.757;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850739.1,ENST00000850739.1;transcript_id=HG003_chrY_T0000139;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000139;transcript_name=HG003_chrY_T0000139;gene_name=LINC02968;ID=exon:HG003_chrY_T0000139:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1472226	1472924	1000	+	.	source_transcript=ENST00000850749.1;source_transcript_name=LINC02968-245;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850749.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850749.1;transcript_score=199.285;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850749.1,ENST00000850749.1;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000140;gene_name=LINC02968;ID=HG003_chrY_T0000140;Name=LINC02968
HG003_chrY	CAT	exon	1472226	1472924	.	+	.	source_transcript=ENST00000850749.1;source_transcript_name=LINC02968-245;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850749.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850749.1;transcript_score=199.285;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850749.1,ENST00000850749.1;transcript_id=HG003_chrY_T0000140;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000140;transcript_name=HG003_chrY_T0000140;gene_name=LINC02968;ID=exon:HG003_chrY_T0000140:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1472228	1475401	1000	+	.	source_transcript=ENST00000850681.1;source_transcript_name=LINC02968-226;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850681.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850681.1;transcript_score=299.43;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850681.1,ENST00000850681.1;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000141;gene_name=LINC02968;ID=HG003_chrY_T0000141;Name=LINC02968
HG003_chrY	CAT	exon	1472228	1472357	.	+	.	source_transcript=ENST00000850681.1;source_transcript_name=LINC02968-226;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850681.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850681.1;transcript_score=299.43;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850681.1,ENST00000850681.1;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000141;transcript_name=HG003_chrY_T0000141;gene_name=LINC02968;ID=exon:HG003_chrY_T0000141:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1472358	1474634	.	+	.	source_transcript=ENST00000850681.1;source_transcript_name=LINC02968-226;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850681.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850681.1;transcript_score=299.43;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850681.1,ENST00000850681.1;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000141;transcript_name=HG003_chrY_T0000141;gene_name=LINC02968;ID=intron:HG003_chrY_T0000141:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1474635	1475401	.	+	.	source_transcript=ENST00000850681.1;source_transcript_name=LINC02968-226;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850681.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850681.1;transcript_score=299.43;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850681.1,ENST00000850681.1;transcript_id=HG003_chrY_T0000141;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000141;transcript_name=HG003_chrY_T0000141;gene_name=LINC02968;ID=exon:HG003_chrY_T0000141:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1472229	1475398	1000	+	.	source_transcript=ENST00000850680.1;source_transcript_name=LINC02968-225;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850680.1;transcript_score=299.346;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850680.1,ENST00000850680.1;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000142;gene_name=LINC02968;ID=HG003_chrY_T0000142;Name=LINC02968
HG003_chrY	CAT	exon	1472229	1472357	.	+	.	source_transcript=ENST00000850680.1;source_transcript_name=LINC02968-225;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850680.1;transcript_score=299.346;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850680.1,ENST00000850680.1;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000142;transcript_name=HG003_chrY_T0000142;gene_name=LINC02968;ID=exon:HG003_chrY_T0000142:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1472358	1474743	.	+	.	source_transcript=ENST00000850680.1;source_transcript_name=LINC02968-225;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850680.1;transcript_score=299.346;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850680.1,ENST00000850680.1;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000142;transcript_name=HG003_chrY_T0000142;gene_name=LINC02968;ID=intron:HG003_chrY_T0000142:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1474744	1475398	.	+	.	source_transcript=ENST00000850680.1;source_transcript_name=LINC02968-225;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850680.1;transcript_score=299.346;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850680.1,ENST00000850680.1;transcript_id=HG003_chrY_T0000142;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000142;transcript_name=HG003_chrY_T0000142;gene_name=LINC02968;ID=exon:HG003_chrY_T0000142:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1472231	1570359	1000	+	.	source_transcript=ENST00000850737.1;source_transcript_name=LINC02968-233;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850737.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850737.1,ENST00000850737.1;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000143;gene_name=LINC02968;ID=HG003_chrY_T0000143;Name=LINC02968
HG003_chrY	CAT	exon	1472231	1472357	.	+	.	source_transcript=ENST00000850737.1;source_transcript_name=LINC02968-233;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850737.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850737.1,ENST00000850737.1;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000143;transcript_name=HG003_chrY_T0000143;gene_name=LINC02968;ID=exon:HG003_chrY_T0000143:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1472358	1540230	.	+	.	source_transcript=ENST00000850737.1;source_transcript_name=LINC02968-233;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850737.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850737.1,ENST00000850737.1;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000143;transcript_name=HG003_chrY_T0000143;gene_name=LINC02968;ID=intron:HG003_chrY_T0000143:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540231	1540318	.	+	.	source_transcript=ENST00000850737.1;source_transcript_name=LINC02968-233;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850737.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850737.1,ENST00000850737.1;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000143;transcript_name=HG003_chrY_T0000143;gene_name=LINC02968;ID=exon:HG003_chrY_T0000143:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1540319	1565795	.	+	.	source_transcript=ENST00000850737.1;source_transcript_name=LINC02968-233;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850737.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850737.1,ENST00000850737.1;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000143;transcript_name=HG003_chrY_T0000143;gene_name=LINC02968;ID=intron:HG003_chrY_T0000143:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1565796	1565855	.	+	.	source_transcript=ENST00000850737.1;source_transcript_name=LINC02968-233;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850737.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850737.1,ENST00000850737.1;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000143;transcript_name=HG003_chrY_T0000143;gene_name=LINC02968;ID=exon:HG003_chrY_T0000143:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1565856	1570194	.	+	.	source_transcript=ENST00000850737.1;source_transcript_name=LINC02968-233;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850737.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850737.1,ENST00000850737.1;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000143;transcript_name=HG003_chrY_T0000143;gene_name=LINC02968;ID=intron:HG003_chrY_T0000143:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1570195	1570359	.	+	.	source_transcript=ENST00000850737.1;source_transcript_name=LINC02968-233;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850737.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850737.1,ENST00000850737.1;transcript_id=HG003_chrY_T0000143;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000143;transcript_name=HG003_chrY_T0000143;gene_name=LINC02968;ID=exon:HG003_chrY_T0000143:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1472232	1476928	1000	+	.	source_transcript=ENST00000850746.1;source_transcript_name=LINC02968-242;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850746.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850746.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850746.1,ENST00000850746.1;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000144;gene_name=LINC02968;ID=HG003_chrY_T0000144;Name=LINC02968
HG003_chrY	CAT	exon	1472232	1472357	.	+	.	source_transcript=ENST00000850746.1;source_transcript_name=LINC02968-242;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850746.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850746.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850746.1,ENST00000850746.1;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000144;transcript_name=HG003_chrY_T0000144;gene_name=LINC02968;ID=exon:HG003_chrY_T0000144:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1472358	1476782	.	+	.	source_transcript=ENST00000850746.1;source_transcript_name=LINC02968-242;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850746.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850746.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850746.1,ENST00000850746.1;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000144;transcript_name=HG003_chrY_T0000144;gene_name=LINC02968;ID=intron:HG003_chrY_T0000144:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1476783	1476928	.	+	.	source_transcript=ENST00000850746.1;source_transcript_name=LINC02968-242;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850746.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850746.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850746.1,ENST00000850746.1;transcript_id=HG003_chrY_T0000144;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000144;transcript_name=HG003_chrY_T0000144;gene_name=LINC02968;ID=exon:HG003_chrY_T0000144:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1472246	1475353	1000	+	.	source_transcript=ENST00000850747.1;source_transcript_name=LINC02968-243;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850747.1;alignment_mode=transMap;normalized_transcript_id=ENST00000850747.1;transcript_score=299.444;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000145;gene_name=LINC02968;ID=HG003_chrY_T0000145;Name=LINC02968
HG003_chrY	CAT	exon	1472246	1472357	.	+	.	source_transcript=ENST00000850747.1;source_transcript_name=LINC02968-243;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850747.1;alignment_mode=transMap;normalized_transcript_id=ENST00000850747.1;transcript_score=299.444;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000145;transcript_name=HG003_chrY_T0000145;gene_name=LINC02968;ID=exon:HG003_chrY_T0000145:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1472358	1474746	.	+	.	source_transcript=ENST00000850747.1;source_transcript_name=LINC02968-243;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850747.1;alignment_mode=transMap;normalized_transcript_id=ENST00000850747.1;transcript_score=299.444;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000145;transcript_name=HG003_chrY_T0000145;gene_name=LINC02968;ID=intron:HG003_chrY_T0000145:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1474747	1475353	.	+	.	source_transcript=ENST00000850747.1;source_transcript_name=LINC02968-243;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850747.1;alignment_mode=transMap;normalized_transcript_id=ENST00000850747.1;transcript_score=299.444;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;transcript_id=HG003_chrY_T0000145;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000145;transcript_name=HG003_chrY_T0000145;gene_name=LINC02968;ID=exon:HG003_chrY_T0000145:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1472246	1475373	1000	+	.	source_transcript=ENST00000850747.1;source_transcript_name=LINC02968-243;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850747.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850747.1;transcript_score=299.444;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850747.1;transcript_id=HG003_chrY_T0000146;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000146;gene_name=LINC02968;ID=HG003_chrY_T0000146;Name=LINC02968
HG003_chrY	CAT	exon	1472246	1472357	.	+	.	source_transcript=ENST00000850747.1;source_transcript_name=LINC02968-243;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850747.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850747.1;transcript_score=299.444;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850747.1;transcript_id=HG003_chrY_T0000146;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000146;transcript_name=HG003_chrY_T0000146;gene_name=LINC02968;ID=exon:HG003_chrY_T0000146:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1472358	1474746	.	+	.	source_transcript=ENST00000850747.1;source_transcript_name=LINC02968-243;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850747.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850747.1;transcript_score=299.444;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850747.1;transcript_id=HG003_chrY_T0000146;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000146;transcript_name=HG003_chrY_T0000146;gene_name=LINC02968;ID=intron:HG003_chrY_T0000146:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1474747	1475373	.	+	.	source_transcript=ENST00000850747.1;source_transcript_name=LINC02968-243;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850747.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850747.1;transcript_score=299.444;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850747.1;transcript_id=HG003_chrY_T0000146;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000146;transcript_name=HG003_chrY_T0000146;gene_name=LINC02968;ID=exon:HG003_chrY_T0000146:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1472248	1492313	1000	+	.	source_transcript=ENST00000850682.1;source_transcript_name=LINC02968-227;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850682.1;transcript_score=299.758;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850682.1,ENST00000850682.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000147;gene_name=LINC02968;ID=HG003_chrY_T0000147;Name=LINC02968
HG003_chrY	CAT	exon	1472248	1472357	.	+	.	source_transcript=ENST00000850682.1;source_transcript_name=LINC02968-227;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850682.1;transcript_score=299.758;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850682.1,ENST00000850682.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000147;transcript_name=HG003_chrY_T0000147;gene_name=LINC02968;ID=exon:HG003_chrY_T0000147:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1472358	1476782	.	+	.	source_transcript=ENST00000850682.1;source_transcript_name=LINC02968-227;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850682.1;transcript_score=299.758;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850682.1,ENST00000850682.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000147;transcript_name=HG003_chrY_T0000147;gene_name=LINC02968;ID=intron:HG003_chrY_T0000147:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1476783	1476893	.	+	.	source_transcript=ENST00000850682.1;source_transcript_name=LINC02968-227;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850682.1;transcript_score=299.758;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850682.1,ENST00000850682.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000147;transcript_name=HG003_chrY_T0000147;gene_name=LINC02968;ID=exon:HG003_chrY_T0000147:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1476894	1492120	.	+	.	source_transcript=ENST00000850682.1;source_transcript_name=LINC02968-227;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850682.1;transcript_score=299.758;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850682.1,ENST00000850682.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000147;transcript_name=HG003_chrY_T0000147;gene_name=LINC02968;ID=intron:HG003_chrY_T0000147:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1492121	1492313	.	+	.	source_transcript=ENST00000850682.1;source_transcript_name=LINC02968-227;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850682.1;transcript_score=299.758;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850682.1,ENST00000850682.1;transcript_id=HG003_chrY_T0000147;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000147;transcript_name=HG003_chrY_T0000147;gene_name=LINC02968;ID=exon:HG003_chrY_T0000147:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1472248	1477089	1000	+	.	source_transcript=ENST00000850684.1;source_transcript_name=LINC02968-229;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850684.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850684.1;transcript_score=299.595;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850684.1,ENST00000850684.1;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000148;gene_name=LINC02968;ID=HG003_chrY_T0000148;Name=LINC02968
HG003_chrY	CAT	exon	1472248	1472357	.	+	.	source_transcript=ENST00000850684.1;source_transcript_name=LINC02968-229;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850684.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850684.1;transcript_score=299.595;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850684.1,ENST00000850684.1;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000148;transcript_name=HG003_chrY_T0000148;gene_name=LINC02968;ID=exon:HG003_chrY_T0000148:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1472358	1476351	.	+	.	source_transcript=ENST00000850684.1;source_transcript_name=LINC02968-229;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850684.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850684.1;transcript_score=299.595;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850684.1,ENST00000850684.1;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000148;transcript_name=HG003_chrY_T0000148;gene_name=LINC02968;ID=intron:HG003_chrY_T0000148:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1476352	1476674	.	+	.	source_transcript=ENST00000850684.1;source_transcript_name=LINC02968-229;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850684.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850684.1;transcript_score=299.595;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850684.1,ENST00000850684.1;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000148;transcript_name=HG003_chrY_T0000148;gene_name=LINC02968;ID=exon:HG003_chrY_T0000148:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1476675	1476782	.	+	.	source_transcript=ENST00000850684.1;source_transcript_name=LINC02968-229;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850684.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850684.1;transcript_score=299.595;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850684.1,ENST00000850684.1;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000148;transcript_name=HG003_chrY_T0000148;gene_name=LINC02968;ID=intron:HG003_chrY_T0000148:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1476783	1477089	.	+	.	source_transcript=ENST00000850684.1;source_transcript_name=LINC02968-229;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850684.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850684.1;transcript_score=299.595;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850684.1,ENST00000850684.1;transcript_id=HG003_chrY_T0000148;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000148;transcript_name=HG003_chrY_T0000148;gene_name=LINC02968;ID=exon:HG003_chrY_T0000148:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1472262	1479112	1000	+	.	source_transcript=ENST00000850683.1;source_transcript_name=LINC02968-228;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850683.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850683.1,ENST00000850683.1;transcript_id=HG003_chrY_T0000149;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000149;gene_name=LINC02968;ID=HG003_chrY_T0000149;Name=LINC02968
HG003_chrY	CAT	exon	1472262	1472357	.	+	.	source_transcript=ENST00000850683.1;source_transcript_name=LINC02968-228;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850683.1,ENST00000850683.1;transcript_id=HG003_chrY_T0000149;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000149;transcript_name=HG003_chrY_T0000149;gene_name=LINC02968;ID=exon:HG003_chrY_T0000149:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1472358	1476782	.	+	.	source_transcript=ENST00000850683.1;source_transcript_name=LINC02968-228;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850683.1,ENST00000850683.1;transcript_id=HG003_chrY_T0000149;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000149;transcript_name=HG003_chrY_T0000149;gene_name=LINC02968;ID=intron:HG003_chrY_T0000149:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1476783	1476893	.	+	.	source_transcript=ENST00000850683.1;source_transcript_name=LINC02968-228;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850683.1,ENST00000850683.1;transcript_id=HG003_chrY_T0000149;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000149;transcript_name=HG003_chrY_T0000149;gene_name=LINC02968;ID=exon:HG003_chrY_T0000149:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1476894	1478818	.	+	.	source_transcript=ENST00000850683.1;source_transcript_name=LINC02968-228;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850683.1,ENST00000850683.1;transcript_id=HG003_chrY_T0000149;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000149;transcript_name=HG003_chrY_T0000149;gene_name=LINC02968;ID=intron:HG003_chrY_T0000149:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1478819	1479112	.	+	.	source_transcript=ENST00000850683.1;source_transcript_name=LINC02968-228;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850683.1,ENST00000850683.1;transcript_id=HG003_chrY_T0000149;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000149;transcript_name=HG003_chrY_T0000149;gene_name=LINC02968;ID=exon:HG003_chrY_T0000149:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1472289	1577844	1000	+	.	source_transcript=ENST00000850685.1;source_transcript_name=LINC02968-230;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850685.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850685.1;transcript_score=299.877;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850685.1,ENST00000850685.1;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000150;gene_name=LINC02968;ID=HG003_chrY_T0000150;Name=LINC02968
HG003_chrY	CAT	exon	1472289	1472357	.	+	.	source_transcript=ENST00000850685.1;source_transcript_name=LINC02968-230;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850685.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850685.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850685.1,ENST00000850685.1;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000150;transcript_name=HG003_chrY_T0000150;gene_name=LINC02968;ID=exon:HG003_chrY_T0000150:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1472358	1540230	.	+	.	source_transcript=ENST00000850685.1;source_transcript_name=LINC02968-230;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850685.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850685.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850685.1,ENST00000850685.1;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000150;transcript_name=HG003_chrY_T0000150;gene_name=LINC02968;ID=intron:HG003_chrY_T0000150:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540231	1540318	.	+	.	source_transcript=ENST00000850685.1;source_transcript_name=LINC02968-230;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850685.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850685.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850685.1,ENST00000850685.1;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000150;transcript_name=HG003_chrY_T0000150;gene_name=LINC02968;ID=exon:HG003_chrY_T0000150:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1540319	1570194	.	+	.	source_transcript=ENST00000850685.1;source_transcript_name=LINC02968-230;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850685.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850685.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850685.1,ENST00000850685.1;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000150;transcript_name=HG003_chrY_T0000150;gene_name=LINC02968;ID=intron:HG003_chrY_T0000150:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1570195	1570496	.	+	.	source_transcript=ENST00000850685.1;source_transcript_name=LINC02968-230;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850685.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850685.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850685.1,ENST00000850685.1;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000150;transcript_name=HG003_chrY_T0000150;gene_name=LINC02968;ID=exon:HG003_chrY_T0000150:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1570497	1577490	.	+	.	source_transcript=ENST00000850685.1;source_transcript_name=LINC02968-230;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850685.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850685.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850685.1,ENST00000850685.1;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000150;transcript_name=HG003_chrY_T0000150;gene_name=LINC02968;ID=intron:HG003_chrY_T0000150:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1577491	1577844	.	+	.	source_transcript=ENST00000850685.1;source_transcript_name=LINC02968-230;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850685.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850685.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850685.1,ENST00000850685.1;transcript_id=HG003_chrY_T0000150;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000150;transcript_name=HG003_chrY_T0000150;gene_name=LINC02968;ID=exon:HG003_chrY_T0000150:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1476417	1545216	1000	+	.	source_transcript=ENST00000850686.1;source_transcript_name=LINC02968-231;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850686.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850686.1;transcript_score=299.41200000000003;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850686.1,ENST00000850686.1;transcript_id=HG003_chrY_T0000151;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000151;gene_name=LINC02968;ID=HG003_chrY_T0000151;Name=LINC02968
HG003_chrY	CAT	exon	1476417	1476674	.	+	.	source_transcript=ENST00000850686.1;source_transcript_name=LINC02968-231;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850686.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850686.1;transcript_score=299.41200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850686.1,ENST00000850686.1;transcript_id=HG003_chrY_T0000151;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000151;transcript_name=HG003_chrY_T0000151;gene_name=LINC02968;ID=exon:HG003_chrY_T0000151:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1476675	1540230	.	+	.	source_transcript=ENST00000850686.1;source_transcript_name=LINC02968-231;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850686.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850686.1;transcript_score=299.41200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850686.1,ENST00000850686.1;transcript_id=HG003_chrY_T0000151;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000151;transcript_name=HG003_chrY_T0000151;gene_name=LINC02968;ID=intron:HG003_chrY_T0000151:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540231	1540318	.	+	.	source_transcript=ENST00000850686.1;source_transcript_name=LINC02968-231;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850686.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850686.1;transcript_score=299.41200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850686.1,ENST00000850686.1;transcript_id=HG003_chrY_T0000151;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000151;transcript_name=HG003_chrY_T0000151;gene_name=LINC02968;ID=exon:HG003_chrY_T0000151:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1540319	1545049	.	+	.	source_transcript=ENST00000850686.1;source_transcript_name=LINC02968-231;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850686.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850686.1;transcript_score=299.41200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850686.1,ENST00000850686.1;transcript_id=HG003_chrY_T0000151;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000151;transcript_name=HG003_chrY_T0000151;gene_name=LINC02968;ID=intron:HG003_chrY_T0000151:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1545050	1545216	.	+	.	source_transcript=ENST00000850686.1;source_transcript_name=LINC02968-231;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850686.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850686.1;transcript_score=299.41200000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850686.1,ENST00000850686.1;transcript_id=HG003_chrY_T0000151;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000151;transcript_name=HG003_chrY_T0000151;gene_name=LINC02968;ID=exon:HG003_chrY_T0000151:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1476417	1545214	1000	+	.	source_transcript=ENST00000850742.1;source_transcript_name=LINC02968-238;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850742.1;transcript_score=299.55899999999997;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850742.1,ENST00000850742.1;transcript_id=HG003_chrY_T0000152;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000152;gene_name=LINC02968;ID=HG003_chrY_T0000152;Name=LINC02968
HG003_chrY	CAT	exon	1476417	1476674	.	+	.	source_transcript=ENST00000850742.1;source_transcript_name=LINC02968-238;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850742.1;transcript_score=299.55899999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850742.1,ENST00000850742.1;transcript_id=HG003_chrY_T0000152;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000152;transcript_name=HG003_chrY_T0000152;gene_name=LINC02968;ID=exon:HG003_chrY_T0000152:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1476675	1540230	.	+	.	source_transcript=ENST00000850742.1;source_transcript_name=LINC02968-238;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850742.1;transcript_score=299.55899999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850742.1,ENST00000850742.1;transcript_id=HG003_chrY_T0000152;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000152;transcript_name=HG003_chrY_T0000152;gene_name=LINC02968;ID=intron:HG003_chrY_T0000152:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540231	1540318	.	+	.	source_transcript=ENST00000850742.1;source_transcript_name=LINC02968-238;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850742.1;transcript_score=299.55899999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850742.1,ENST00000850742.1;transcript_id=HG003_chrY_T0000152;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000152;transcript_name=HG003_chrY_T0000152;gene_name=LINC02968;ID=exon:HG003_chrY_T0000152:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1540319	1540483	.	+	.	source_transcript=ENST00000850742.1;source_transcript_name=LINC02968-238;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850742.1;transcript_score=299.55899999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850742.1,ENST00000850742.1;transcript_id=HG003_chrY_T0000152;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000152;transcript_name=HG003_chrY_T0000152;gene_name=LINC02968;ID=intron:HG003_chrY_T0000152:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540484	1540656	.	+	.	source_transcript=ENST00000850742.1;source_transcript_name=LINC02968-238;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850742.1;transcript_score=299.55899999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850742.1,ENST00000850742.1;transcript_id=HG003_chrY_T0000152;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000152;transcript_name=HG003_chrY_T0000152;gene_name=LINC02968;ID=exon:HG003_chrY_T0000152:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1540657	1545049	.	+	.	source_transcript=ENST00000850742.1;source_transcript_name=LINC02968-238;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850742.1;transcript_score=299.55899999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850742.1,ENST00000850742.1;transcript_id=HG003_chrY_T0000152;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000152;transcript_name=HG003_chrY_T0000152;gene_name=LINC02968;ID=intron:HG003_chrY_T0000152:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1545050	1545214	.	+	.	source_transcript=ENST00000850742.1;source_transcript_name=LINC02968-238;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850742.1;transcript_score=299.55899999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850742.1,ENST00000850742.1;transcript_id=HG003_chrY_T0000152;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000152;transcript_name=HG003_chrY_T0000152;gene_name=LINC02968;ID=exon:HG003_chrY_T0000152:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1476417	1476928	1000	+	.	source_transcript=ENST00000850839.1;source_transcript_name=LINC02968-248;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850839.1;transcript_score=299.257;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850839.1,ENST00000850839.1;transcript_id=HG003_chrY_T0000153;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000153;gene_name=LINC02968;ID=HG003_chrY_T0000153;Name=LINC02968
HG003_chrY	CAT	exon	1476417	1476674	.	+	.	source_transcript=ENST00000850839.1;source_transcript_name=LINC02968-248;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850839.1;transcript_score=299.257;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850839.1,ENST00000850839.1;transcript_id=HG003_chrY_T0000153;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000153;transcript_name=HG003_chrY_T0000153;gene_name=LINC02968;ID=exon:HG003_chrY_T0000153:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1476675	1476782	.	+	.	source_transcript=ENST00000850839.1;source_transcript_name=LINC02968-248;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850839.1;transcript_score=299.257;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850839.1,ENST00000850839.1;transcript_id=HG003_chrY_T0000153;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000153;transcript_name=HG003_chrY_T0000153;gene_name=LINC02968;ID=intron:HG003_chrY_T0000153:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1476783	1476928	.	+	.	source_transcript=ENST00000850839.1;source_transcript_name=LINC02968-248;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850839.1;transcript_score=299.257;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850839.1,ENST00000850839.1;transcript_id=HG003_chrY_T0000153;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000153;transcript_name=HG003_chrY_T0000153;gene_name=LINC02968;ID=exon:HG003_chrY_T0000153:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1476428	1540697	1000	+	.	source_transcript=ENST00000850744.1;source_transcript_name=LINC02968-240;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850744.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850744.1;transcript_score=299.454;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850744.1,ENST00000850744.1;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000154;gene_name=LINC02968;ID=HG003_chrY_T0000154;Name=LINC02968
HG003_chrY	CAT	exon	1476428	1476674	.	+	.	source_transcript=ENST00000850744.1;source_transcript_name=LINC02968-240;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850744.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850744.1;transcript_score=299.454;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850744.1,ENST00000850744.1;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000154;transcript_name=HG003_chrY_T0000154;gene_name=LINC02968;ID=exon:HG003_chrY_T0000154:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1476675	1540230	.	+	.	source_transcript=ENST00000850744.1;source_transcript_name=LINC02968-240;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850744.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850744.1;transcript_score=299.454;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850744.1,ENST00000850744.1;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000154;transcript_name=HG003_chrY_T0000154;gene_name=LINC02968;ID=intron:HG003_chrY_T0000154:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540231	1540318	.	+	.	source_transcript=ENST00000850744.1;source_transcript_name=LINC02968-240;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850744.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850744.1;transcript_score=299.454;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850744.1,ENST00000850744.1;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000154;transcript_name=HG003_chrY_T0000154;gene_name=LINC02968;ID=exon:HG003_chrY_T0000154:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1540319	1540483	.	+	.	source_transcript=ENST00000850744.1;source_transcript_name=LINC02968-240;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850744.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850744.1;transcript_score=299.454;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850744.1,ENST00000850744.1;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000154;transcript_name=HG003_chrY_T0000154;gene_name=LINC02968;ID=intron:HG003_chrY_T0000154:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540484	1540697	.	+	.	source_transcript=ENST00000850744.1;source_transcript_name=LINC02968-240;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850744.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850744.1;transcript_score=299.454;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850744.1,ENST00000850744.1;transcript_id=HG003_chrY_T0000154;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000154;transcript_name=HG003_chrY_T0000154;gene_name=LINC02968;ID=exon:HG003_chrY_T0000154:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1476445	1565986	1000	+	.	source_transcript=ENST00000850740.1;source_transcript_name=LINC02968-236;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850740.1;transcript_score=299.214;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850740.1,ENST00000850740.1;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000155;gene_name=LINC02968;ID=HG003_chrY_T0000155;Name=LINC02968
HG003_chrY	CAT	exon	1476445	1476674	.	+	.	source_transcript=ENST00000850740.1;source_transcript_name=LINC02968-236;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850740.1;transcript_score=299.214;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850740.1,ENST00000850740.1;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000155;transcript_name=HG003_chrY_T0000155;gene_name=LINC02968;ID=exon:HG003_chrY_T0000155:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1476675	1540230	.	+	.	source_transcript=ENST00000850740.1;source_transcript_name=LINC02968-236;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850740.1;transcript_score=299.214;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850740.1,ENST00000850740.1;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000155;transcript_name=HG003_chrY_T0000155;gene_name=LINC02968;ID=intron:HG003_chrY_T0000155:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540231	1540318	.	+	.	source_transcript=ENST00000850740.1;source_transcript_name=LINC02968-236;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850740.1;transcript_score=299.214;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850740.1,ENST00000850740.1;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000155;transcript_name=HG003_chrY_T0000155;gene_name=LINC02968;ID=exon:HG003_chrY_T0000155:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1540319	1565795	.	+	.	source_transcript=ENST00000850740.1;source_transcript_name=LINC02968-236;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850740.1;transcript_score=299.214;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850740.1,ENST00000850740.1;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000155;transcript_name=HG003_chrY_T0000155;gene_name=LINC02968;ID=intron:HG003_chrY_T0000155:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1565796	1565986	.	+	.	source_transcript=ENST00000850740.1;source_transcript_name=LINC02968-236;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850740.1;transcript_score=299.214;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850740.1,ENST00000850740.1;transcript_id=HG003_chrY_T0000155;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000155;transcript_name=HG003_chrY_T0000155;gene_name=LINC02968;ID=exon:HG003_chrY_T0000155:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1476468	1570441	1000	+	.	source_transcript=ENST00000850738.1;source_transcript_name=LINC02968-234;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850738.1;transcript_score=299.502;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850738.1,ENST00000850738.1;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000156;gene_name=LINC02968;ID=HG003_chrY_T0000156;Name=LINC02968
HG003_chrY	CAT	exon	1476468	1476674	.	+	.	source_transcript=ENST00000850738.1;source_transcript_name=LINC02968-234;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850738.1;transcript_score=299.502;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850738.1,ENST00000850738.1;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000156;transcript_name=HG003_chrY_T0000156;gene_name=LINC02968;ID=exon:HG003_chrY_T0000156:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1476675	1540230	.	+	.	source_transcript=ENST00000850738.1;source_transcript_name=LINC02968-234;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850738.1;transcript_score=299.502;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850738.1,ENST00000850738.1;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000156;transcript_name=HG003_chrY_T0000156;gene_name=LINC02968;ID=intron:HG003_chrY_T0000156:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540231	1540318	.	+	.	source_transcript=ENST00000850738.1;source_transcript_name=LINC02968-234;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850738.1;transcript_score=299.502;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850738.1,ENST00000850738.1;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000156;transcript_name=HG003_chrY_T0000156;gene_name=LINC02968;ID=exon:HG003_chrY_T0000156:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1540319	1565795	.	+	.	source_transcript=ENST00000850738.1;source_transcript_name=LINC02968-234;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850738.1;transcript_score=299.502;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850738.1,ENST00000850738.1;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000156;transcript_name=HG003_chrY_T0000156;gene_name=LINC02968;ID=intron:HG003_chrY_T0000156:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1565796	1565855	.	+	.	source_transcript=ENST00000850738.1;source_transcript_name=LINC02968-234;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850738.1;transcript_score=299.502;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850738.1,ENST00000850738.1;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000156;transcript_name=HG003_chrY_T0000156;gene_name=LINC02968;ID=exon:HG003_chrY_T0000156:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1565856	1570194	.	+	.	source_transcript=ENST00000850738.1;source_transcript_name=LINC02968-234;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850738.1;transcript_score=299.502;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850738.1,ENST00000850738.1;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000156;transcript_name=HG003_chrY_T0000156;gene_name=LINC02968;ID=intron:HG003_chrY_T0000156:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1570195	1570441	.	+	.	source_transcript=ENST00000850738.1;source_transcript_name=LINC02968-234;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850738.1;transcript_score=299.502;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850738.1,ENST00000850738.1;transcript_id=HG003_chrY_T0000156;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000156;transcript_name=HG003_chrY_T0000156;gene_name=LINC02968;ID=exon:HG003_chrY_T0000156:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1476468	1545214	1000	+	.	source_transcript=ENST00000850743.1;source_transcript_name=LINC02968-239;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850743.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850743.1;transcript_score=299.395;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850743.1,ENST00000850743.1;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000157;gene_name=LINC02968;ID=HG003_chrY_T0000157;Name=LINC02968
HG003_chrY	CAT	exon	1476468	1476713	.	+	.	source_transcript=ENST00000850743.1;source_transcript_name=LINC02968-239;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850743.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850743.1;transcript_score=299.395;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850743.1,ENST00000850743.1;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000157;transcript_name=HG003_chrY_T0000157;gene_name=LINC02968;ID=exon:HG003_chrY_T0000157:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1476714	1540230	.	+	.	source_transcript=ENST00000850743.1;source_transcript_name=LINC02968-239;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850743.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850743.1;transcript_score=299.395;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850743.1,ENST00000850743.1;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000157;transcript_name=HG003_chrY_T0000157;gene_name=LINC02968;ID=intron:HG003_chrY_T0000157:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540231	1540318	.	+	.	source_transcript=ENST00000850743.1;source_transcript_name=LINC02968-239;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850743.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850743.1;transcript_score=299.395;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850743.1,ENST00000850743.1;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000157;transcript_name=HG003_chrY_T0000157;gene_name=LINC02968;ID=exon:HG003_chrY_T0000157:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1540319	1545049	.	+	.	source_transcript=ENST00000850743.1;source_transcript_name=LINC02968-239;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850743.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850743.1;transcript_score=299.395;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850743.1,ENST00000850743.1;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000157;transcript_name=HG003_chrY_T0000157;gene_name=LINC02968;ID=intron:HG003_chrY_T0000157:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1545050	1545214	.	+	.	source_transcript=ENST00000850743.1;source_transcript_name=LINC02968-239;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850743.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850743.1;transcript_score=299.395;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850743.1,ENST00000850743.1;transcript_id=HG003_chrY_T0000157;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000157;transcript_name=HG003_chrY_T0000157;gene_name=LINC02968;ID=exon:HG003_chrY_T0000157:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1476470	1565985	1000	+	.	source_transcript=ENST00000850687.1;source_transcript_name=LINC02968-232;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850687.1;transcript_score=299.13599999999997;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850687.1,ENST00000850687.1;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000158;gene_name=LINC02968;ID=HG003_chrY_T0000158;Name=LINC02968
HG003_chrY	CAT	exon	1476470	1476674	.	+	.	source_transcript=ENST00000850687.1;source_transcript_name=LINC02968-232;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850687.1;transcript_score=299.13599999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850687.1,ENST00000850687.1;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000158;transcript_name=HG003_chrY_T0000158;gene_name=LINC02968;ID=exon:HG003_chrY_T0000158:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1476675	1540230	.	+	.	source_transcript=ENST00000850687.1;source_transcript_name=LINC02968-232;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850687.1;transcript_score=299.13599999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850687.1,ENST00000850687.1;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000158;transcript_name=HG003_chrY_T0000158;gene_name=LINC02968;ID=intron:HG003_chrY_T0000158:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1540231	1540318	.	+	.	source_transcript=ENST00000850687.1;source_transcript_name=LINC02968-232;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850687.1;transcript_score=299.13599999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850687.1,ENST00000850687.1;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000158;transcript_name=HG003_chrY_T0000158;gene_name=LINC02968;ID=exon:HG003_chrY_T0000158:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1540319	1556441	.	+	.	source_transcript=ENST00000850687.1;source_transcript_name=LINC02968-232;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850687.1;transcript_score=299.13599999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850687.1,ENST00000850687.1;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000158;transcript_name=HG003_chrY_T0000158;gene_name=LINC02968;ID=intron:HG003_chrY_T0000158:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1556442	1556537	.	+	.	source_transcript=ENST00000850687.1;source_transcript_name=LINC02968-232;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850687.1;transcript_score=299.13599999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850687.1,ENST00000850687.1;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000158;transcript_name=HG003_chrY_T0000158;gene_name=LINC02968;ID=exon:HG003_chrY_T0000158:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1556538	1565795	.	+	.	source_transcript=ENST00000850687.1;source_transcript_name=LINC02968-232;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850687.1;transcript_score=299.13599999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850687.1,ENST00000850687.1;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000158;transcript_name=HG003_chrY_T0000158;gene_name=LINC02968;ID=intron:HG003_chrY_T0000158:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1565796	1565985	.	+	.	source_transcript=ENST00000850687.1;source_transcript_name=LINC02968-232;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850687.1;transcript_score=299.13599999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850687.1,ENST00000850687.1;transcript_id=HG003_chrY_T0000158;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000158;transcript_name=HG003_chrY_T0000158;gene_name=LINC02968;ID=exon:HG003_chrY_T0000158:3;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1546745	1556499	1000	+	.	source_transcript=ENST00000850827.1;source_transcript_name=LINC02968-246;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850827.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850827.1;transcript_score=299.551;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850827.1,ENST00000850827.1;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000159;gene_name=LINC02968;ID=HG003_chrY_T0000159;Name=LINC02968
HG003_chrY	CAT	exon	1546745	1546884	.	+	.	source_transcript=ENST00000850827.1;source_transcript_name=LINC02968-246;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850827.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850827.1;transcript_score=299.551;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850827.1,ENST00000850827.1;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000159;transcript_name=HG003_chrY_T0000159;gene_name=LINC02968;ID=exon:HG003_chrY_T0000159:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1546885	1548111	.	+	.	source_transcript=ENST00000850827.1;source_transcript_name=LINC02968-246;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850827.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850827.1;transcript_score=299.551;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850827.1,ENST00000850827.1;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000159;transcript_name=HG003_chrY_T0000159;gene_name=LINC02968;ID=intron:HG003_chrY_T0000159:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1548112	1548358	.	+	.	source_transcript=ENST00000850827.1;source_transcript_name=LINC02968-246;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850827.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850827.1;transcript_score=299.551;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850827.1,ENST00000850827.1;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000159;transcript_name=HG003_chrY_T0000159;gene_name=LINC02968;ID=exon:HG003_chrY_T0000159:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1548359	1556441	.	+	.	source_transcript=ENST00000850827.1;source_transcript_name=LINC02968-246;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850827.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850827.1;transcript_score=299.551;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850827.1,ENST00000850827.1;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000159;transcript_name=HG003_chrY_T0000159;gene_name=LINC02968;ID=intron:HG003_chrY_T0000159:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1556442	1556499	.	+	.	source_transcript=ENST00000850827.1;source_transcript_name=LINC02968-246;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850827.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850827.1;transcript_score=299.551;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850827.1,ENST00000850827.1;transcript_id=HG003_chrY_T0000159;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000159;transcript_name=HG003_chrY_T0000159;gene_name=LINC02968;ID=exon:HG003_chrY_T0000159:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1548279	1577744	1000	+	.	source_transcript=ENST00000850830.1;source_transcript_name=LINC02968-247;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850830.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850830.1;transcript_score=299.843;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850830.1,ENST00000850830.1;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000160;gene_name=LINC02968;ID=HG003_chrY_T0000160;Name=LINC02968
HG003_chrY	CAT	exon	1548279	1548358	.	+	.	source_transcript=ENST00000850830.1;source_transcript_name=LINC02968-247;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850830.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850830.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850830.1,ENST00000850830.1;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000160;transcript_name=HG003_chrY_T0000160;gene_name=LINC02968;ID=exon:HG003_chrY_T0000160:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1548359	1570194	.	+	.	source_transcript=ENST00000850830.1;source_transcript_name=LINC02968-247;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850830.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850830.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850830.1,ENST00000850830.1;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000160;transcript_name=HG003_chrY_T0000160;gene_name=LINC02968;ID=intron:HG003_chrY_T0000160:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1570195	1570496	.	+	.	source_transcript=ENST00000850830.1;source_transcript_name=LINC02968-247;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850830.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850830.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850830.1,ENST00000850830.1;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000160;transcript_name=HG003_chrY_T0000160;gene_name=LINC02968;ID=exon:HG003_chrY_T0000160:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1570497	1577490	.	+	.	source_transcript=ENST00000850830.1;source_transcript_name=LINC02968-247;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850830.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850830.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850830.1,ENST00000850830.1;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000160;transcript_name=HG003_chrY_T0000160;gene_name=LINC02968;ID=intron:HG003_chrY_T0000160:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1577491	1577744	.	+	.	source_transcript=ENST00000850830.1;source_transcript_name=LINC02968-247;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850830.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850830.1;transcript_score=299.843;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850830.1,ENST00000850830.1;transcript_id=HG003_chrY_T0000160;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000160;transcript_name=HG003_chrY_T0000160;gene_name=LINC02968;ID=exon:HG003_chrY_T0000160:2;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1565166	1566333	1000	+	.	source_transcript=ENST00000850748.1;source_transcript_name=LINC02968-244;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850748.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850748.1;transcript_score=299.716;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850748.1,ENST00000850748.1;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000161;gene_name=LINC02968;ID=HG003_chrY_T0000161;Name=LINC02968
HG003_chrY	CAT	exon	1565166	1565331	.	+	.	source_transcript=ENST00000850748.1;source_transcript_name=LINC02968-244;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850748.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850748.1;transcript_score=299.716;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850748.1,ENST00000850748.1;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000161;transcript_name=HG003_chrY_T0000161;gene_name=LINC02968;ID=exon:HG003_chrY_T0000161:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1565332	1565795	.	+	.	source_transcript=ENST00000850748.1;source_transcript_name=LINC02968-244;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850748.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850748.1;transcript_score=299.716;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850748.1,ENST00000850748.1;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000161;transcript_name=HG003_chrY_T0000161;gene_name=LINC02968;ID=intron:HG003_chrY_T0000161:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1565796	1566333	.	+	.	source_transcript=ENST00000850748.1;source_transcript_name=LINC02968-244;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850748.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850748.1;transcript_score=299.716;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850748.1,ENST00000850748.1;transcript_id=HG003_chrY_T0000161;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000161;transcript_name=HG003_chrY_T0000161;gene_name=LINC02968;ID=exon:HG003_chrY_T0000161:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1565613	1570440	1000	+	.	source_transcript=ENST00000850745.1;source_transcript_name=LINC02968-241;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850745.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850745.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850745.1,ENST00000850745.1;transcript_id=HG003_chrY_T0000162;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_G0000037;transcript_name=HG003_chrY_T0000162;gene_name=LINC02968;ID=HG003_chrY_T0000162;Name=LINC02968
HG003_chrY	CAT	exon	1565613	1565691	.	+	.	source_transcript=ENST00000850745.1;source_transcript_name=LINC02968-241;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850745.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850745.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850745.1,ENST00000850745.1;transcript_id=HG003_chrY_T0000162;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000162;transcript_name=HG003_chrY_T0000162;gene_name=LINC02968;ID=exon:HG003_chrY_T0000162:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1565692	1570194	.	+	.	source_transcript=ENST00000850745.1;source_transcript_name=LINC02968-241;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850745.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850745.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850745.1,ENST00000850745.1;transcript_id=HG003_chrY_T0000162;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000162;transcript_name=HG003_chrY_T0000162;gene_name=LINC02968;ID=intron:HG003_chrY_T0000162:0;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1570195	1570440	.	+	.	source_transcript=ENST00000850745.1;source_transcript_name=LINC02968-241;source_gene=ENSG00000310540.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310540.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850745.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850745.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC02968;alternative_source_transcripts=ENST00000850745.1,ENST00000850745.1;transcript_id=HG003_chrY_T0000162;gene_id=HG003_chrY_G0000037;Parent=HG003_chrY_T0000162;transcript_name=HG003_chrY_T0000162;gene_name=LINC02968;ID=exon:HG003_chrY_T0000162:1;Name=LINC02968;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1580979	1582414	.	+	.	source_gene_common_name=ENSG00000292330;source_gene=ENSG00000292330.1;alternative_source_transcripts=ENST00000711120.1,ENST00000711120.1;gene_id=HG003_chrY_G0000038;gene_biotype=lncRNA;gene_name=ENSG00000292330;gene_sources=liftoff;ID=HG003_chrY_G0000038;Name=ENSG00000292330
HG003_chrY	CAT	transcript	1580979	1582414	1000	+	.	source_transcript=ENST00000711120.1;source_transcript_name=ENST00000711120;source_gene=ENSG00000292330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711120.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711120.1;transcript_score=299.635;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292330;alternative_source_transcripts=ENST00000711120.1,ENST00000711120.1;transcript_id=HG003_chrY_T0000163;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_G0000038;transcript_name=HG003_chrY_T0000163;gene_name=ENSG00000292330;ID=HG003_chrY_T0000163;Name=ENSG00000292330
HG003_chrY	CAT	exon	1580979	1581184	.	+	.	source_transcript=ENST00000711120.1;source_transcript_name=ENST00000711120;source_gene=ENSG00000292330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711120.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711120.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292330;alternative_source_transcripts=ENST00000711120.1,ENST00000711120.1;transcript_id=HG003_chrY_T0000163;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000163;transcript_name=HG003_chrY_T0000163;gene_name=ENSG00000292330;ID=exon:HG003_chrY_T0000163:0;Name=ENSG00000292330;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1581185	1582070	.	+	.	source_transcript=ENST00000711120.1;source_transcript_name=ENST00000711120;source_gene=ENSG00000292330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711120.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711120.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292330;alternative_source_transcripts=ENST00000711120.1,ENST00000711120.1;transcript_id=HG003_chrY_T0000163;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000163;transcript_name=HG003_chrY_T0000163;gene_name=ENSG00000292330;ID=intron:HG003_chrY_T0000163:0;Name=ENSG00000292330;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1582071	1582414	.	+	.	source_transcript=ENST00000711120.1;source_transcript_name=ENST00000711120;source_gene=ENSG00000292330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711120.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711120.1;transcript_score=299.635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292330;alternative_source_transcripts=ENST00000711120.1,ENST00000711120.1;transcript_id=HG003_chrY_T0000163;gene_id=HG003_chrY_G0000038;Parent=HG003_chrY_T0000163;transcript_name=HG003_chrY_T0000163;gene_name=ENSG00000292330;ID=exon:HG003_chrY_T0000163:1;Name=ENSG00000292330;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1697187	1708415	.	+	.	source_gene_common_name=ENSG00000310547;source_gene=ENSG00000310547.1;alternative_source_transcripts=ENST00000850714.1,ENST00000850714.1;gene_id=HG003_chrY_G0000039;gene_biotype=lncRNA;gene_name=ENSG00000310547;gene_sources=liftoff;ID=HG003_chrY_G0000039;Name=ENSG00000310547
HG003_chrY	CAT	transcript	1697187	1708415	1000	+	.	source_transcript=ENST00000850714.1;source_transcript_name=ENST00000850714;source_gene=ENSG00000310547.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310547.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850714.1;transcript_score=298.971;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310547;alternative_source_transcripts=ENST00000850714.1,ENST00000850714.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000039;Parent=HG003_chrY_G0000039;transcript_name=HG003_chrY_T0000164;gene_name=ENSG00000310547;ID=HG003_chrY_T0000164;Name=ENSG00000310547
HG003_chrY	CAT	exon	1697187	1697377	.	+	.	source_transcript=ENST00000850714.1;source_transcript_name=ENST00000850714;source_gene=ENSG00000310547.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310547.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850714.1;transcript_score=298.971;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310547;alternative_source_transcripts=ENST00000850714.1,ENST00000850714.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000039;Parent=HG003_chrY_T0000164;transcript_name=HG003_chrY_T0000164;gene_name=ENSG00000310547;ID=exon:HG003_chrY_T0000164:0;Name=ENSG00000310547;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1697378	1707170	.	+	.	source_transcript=ENST00000850714.1;source_transcript_name=ENST00000850714;source_gene=ENSG00000310547.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310547.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850714.1;transcript_score=298.971;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310547;alternative_source_transcripts=ENST00000850714.1,ENST00000850714.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000039;Parent=HG003_chrY_T0000164;transcript_name=HG003_chrY_T0000164;gene_name=ENSG00000310547;ID=intron:HG003_chrY_T0000164:0;Name=ENSG00000310547;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1707171	1707280	.	+	.	source_transcript=ENST00000850714.1;source_transcript_name=ENST00000850714;source_gene=ENSG00000310547.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310547.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850714.1;transcript_score=298.971;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310547;alternative_source_transcripts=ENST00000850714.1,ENST00000850714.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000039;Parent=HG003_chrY_T0000164;transcript_name=HG003_chrY_T0000164;gene_name=ENSG00000310547;ID=exon:HG003_chrY_T0000164:1;Name=ENSG00000310547;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1707281	1707730	.	+	.	source_transcript=ENST00000850714.1;source_transcript_name=ENST00000850714;source_gene=ENSG00000310547.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310547.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850714.1;transcript_score=298.971;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310547;alternative_source_transcripts=ENST00000850714.1,ENST00000850714.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000039;Parent=HG003_chrY_T0000164;transcript_name=HG003_chrY_T0000164;gene_name=ENSG00000310547;ID=intron:HG003_chrY_T0000164:1;Name=ENSG00000310547;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1707731	1708415	.	+	.	source_transcript=ENST00000850714.1;source_transcript_name=ENST00000850714;source_gene=ENSG00000310547.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310547.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850714.1;transcript_score=298.971;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310547;alternative_source_transcripts=ENST00000850714.1,ENST00000850714.1;transcript_id=HG003_chrY_T0000164;gene_id=HG003_chrY_G0000039;Parent=HG003_chrY_T0000164;transcript_name=HG003_chrY_T0000164;gene_name=ENSG00000310547;ID=exon:HG003_chrY_T0000164:2;Name=ENSG00000310547;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1848617	2133996	.	-	.	source_gene_common_name=DHRSX;source_gene=ENSG00000292338.1;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;gene_id=HG003_chrY_G0000040;gene_biotype=protein_coding;gene_name=DHRSX;gene_sources=liftoff;ID=HG003_chrY_G0000040;Name=DHRSX
HG003_chrY	CAT	transcript	1848617	2132167	100	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_G0000040;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=HG003_chrY_T0000165;Name=DHRSX
HG003_chrY	CAT	exon	1848617	1850340	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=exon:HG003_chrY_T0000165:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1850152	1850340	.	-	0	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000165:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	1850152	1850154	.	-	0	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=stop_codon:HG003_chrY_T0000165;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1850341	1872882	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=intron:HG003_chrY_T0000165:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1872883	1873090	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=exon:HG003_chrY_T0000165:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1872883	1873090	.	-	1	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000165:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1873091	1896615	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=intron:HG003_chrY_T0000165:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1896616	1896823	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=exon:HG003_chrY_T0000165:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1896616	1896823	.	-	2	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000165:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1896824	1917265	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=intron:HG003_chrY_T0000165:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1917266	1917367	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=exon:HG003_chrY_T0000165:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1917266	1917367	.	-	2	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000165:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1917368	2039907	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=intron:HG003_chrY_T0000165:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2039908	2039976	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=exon:HG003_chrY_T0000165:4;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2039908	2039976	.	-	2	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000165:4;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2039977	2056360	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=intron:HG003_chrY_T0000165:4;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2056361	2056468	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=exon:HG003_chrY_T0000165:5;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2056361	2056468	.	-	2	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000165:5;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2056469	2132007	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=intron:HG003_chrY_T0000165:5;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2132008	2132167	.	-	.	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=exon:HG003_chrY_T0000165:6;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2132008	2132116	.	-	0	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000165:6;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2132114	2132116	.	-	0	source_transcript=ENST00000711204.1;source_transcript_name=DHRSX-214;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711204.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711204.1,ENST00000711204.1;transcript_id=HG003_chrY_T0000165;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000165;transcript_name=HG003_chrY_T0000165;gene_name=DHRSX;ID=start_codon:HG003_chrY_T0000165;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1872922	2132164	100	-	.	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_G0000040;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=HG003_chrY_T0000166;Name=DHRSX
HG003_chrY	CAT	exon	1872922	1873090	.	-	.	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=exon:HG003_chrY_T0000166:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1872922	1873090	.	-	1	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000166:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1873091	1896615	.	-	.	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=intron:HG003_chrY_T0000166:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1896616	1896823	.	-	.	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=exon:HG003_chrY_T0000166:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1896616	1896823	.	-	2	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000166:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1896824	1917265	.	-	.	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=intron:HG003_chrY_T0000166:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1917266	1917367	.	-	.	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=exon:HG003_chrY_T0000166:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1917266	1917367	.	-	2	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000166:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1917368	2056360	.	-	.	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=intron:HG003_chrY_T0000166:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2056361	2056468	.	-	.	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=exon:HG003_chrY_T0000166:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2056361	2056468	.	-	2	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000166:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2056469	2132007	.	-	.	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=intron:HG003_chrY_T0000166:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2132008	2132164	.	-	.	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=exon:HG003_chrY_T0000166:4;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2132008	2132116	.	-	0	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000166:4;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2132114	2132116	.	-	0	source_transcript=ENST00000711203.1;source_transcript_name=DHRSX-213;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711203.1,ENST00000711203.1;transcript_id=HG003_chrY_T0000166;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000166;transcript_name=HG003_chrY_T0000166;gene_name=DHRSX;ID=start_codon:HG003_chrY_T0000166;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1891193	1896813	1000	-	.	source_transcript=ENST00000711202.1;source_transcript_name=DHRSX-212;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711202.1;transcript_score=299.476;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711202.1,ENST00000711202.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_G0000040;transcript_name=HG003_chrY_T0000167;gene_name=DHRSX;ID=HG003_chrY_T0000167;Name=DHRSX
HG003_chrY	CAT	exon	1891193	1891566	.	-	.	source_transcript=ENST00000711202.1;source_transcript_name=DHRSX-212;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711202.1;transcript_score=299.476;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711202.1,ENST00000711202.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000167;transcript_name=HG003_chrY_T0000167;gene_name=DHRSX;ID=exon:HG003_chrY_T0000167:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1891567	1896615	.	-	.	source_transcript=ENST00000711202.1;source_transcript_name=DHRSX-212;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711202.1;transcript_score=299.476;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711202.1,ENST00000711202.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000167;transcript_name=HG003_chrY_T0000167;gene_name=DHRSX;ID=intron:HG003_chrY_T0000167:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1896616	1896813	.	-	.	source_transcript=ENST00000711202.1;source_transcript_name=DHRSX-212;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711202.1;transcript_score=299.476;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711202.1,ENST00000711202.1;transcript_id=HG003_chrY_T0000167;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000167;transcript_name=HG003_chrY_T0000167;gene_name=DHRSX;ID=exon:HG003_chrY_T0000167:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1896646	2131842	100	-	.	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_G0000040;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=HG003_chrY_T0000168;Name=DHRSX
HG003_chrY	CAT	exon	1896646	1896823	.	-	.	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=exon:HG003_chrY_T0000168:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1896646	1896823	.	-	2	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000168:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1896824	1917265	.	-	.	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=intron:HG003_chrY_T0000168:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1917266	1917367	.	-	.	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=exon:HG003_chrY_T0000168:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1917266	1917367	.	-	2	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000168:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1917368	2039907	.	-	.	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=intron:HG003_chrY_T0000168:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2039908	2039976	.	-	.	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=exon:HG003_chrY_T0000168:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2039908	2039976	.	-	2	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000168:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2039977	2056360	.	-	.	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=intron:HG003_chrY_T0000168:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2056361	2056468	.	-	.	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=exon:HG003_chrY_T0000168:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2056361	2056376	.	-	0	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000168:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2056374	2056376	.	-	0	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=start_codon:HG003_chrY_T0000168;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2056469	2131501	.	-	.	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=intron:HG003_chrY_T0000168:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2131502	2131842	.	-	.	source_transcript=ENST00000711201.1;source_transcript_name=DHRSX-211;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711201.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711201.1,ENST00000711201.1;transcript_id=HG003_chrY_T0000168;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000168;transcript_name=HG003_chrY_T0000168;gene_name=DHRSX;ID=exon:HG003_chrY_T0000168:4;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1896730	2133996	1000	-	.	source_transcript=ENST00000711200.1;source_transcript_name=DHRSX-210;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711200.1;transcript_score=299.814;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711200.1,ENST00000711200.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_G0000040;transcript_name=HG003_chrY_T0000169;gene_name=DHRSX;ID=HG003_chrY_T0000169;Name=DHRSX
HG003_chrY	CAT	exon	1896730	1896823	.	-	.	source_transcript=ENST00000711200.1;source_transcript_name=DHRSX-210;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711200.1;transcript_score=299.814;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711200.1,ENST00000711200.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000169;transcript_name=HG003_chrY_T0000169;gene_name=DHRSX;ID=exon:HG003_chrY_T0000169:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1896824	1917265	.	-	.	source_transcript=ENST00000711200.1;source_transcript_name=DHRSX-210;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711200.1;transcript_score=299.814;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711200.1,ENST00000711200.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000169;transcript_name=HG003_chrY_T0000169;gene_name=DHRSX;ID=intron:HG003_chrY_T0000169:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1917266	1917367	.	-	.	source_transcript=ENST00000711200.1;source_transcript_name=DHRSX-210;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711200.1;transcript_score=299.814;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711200.1,ENST00000711200.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000169;transcript_name=HG003_chrY_T0000169;gene_name=DHRSX;ID=exon:HG003_chrY_T0000169:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1917368	2023456	.	-	.	source_transcript=ENST00000711200.1;source_transcript_name=DHRSX-210;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711200.1;transcript_score=299.814;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711200.1,ENST00000711200.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000169;transcript_name=HG003_chrY_T0000169;gene_name=DHRSX;ID=intron:HG003_chrY_T0000169:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2023457	2023577	.	-	.	source_transcript=ENST00000711200.1;source_transcript_name=DHRSX-210;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711200.1;transcript_score=299.814;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711200.1,ENST00000711200.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000169;transcript_name=HG003_chrY_T0000169;gene_name=DHRSX;ID=exon:HG003_chrY_T0000169:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2023578	2039907	.	-	.	source_transcript=ENST00000711200.1;source_transcript_name=DHRSX-210;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711200.1;transcript_score=299.814;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711200.1,ENST00000711200.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000169;transcript_name=HG003_chrY_T0000169;gene_name=DHRSX;ID=intron:HG003_chrY_T0000169:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2039908	2039976	.	-	.	source_transcript=ENST00000711200.1;source_transcript_name=DHRSX-210;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711200.1;transcript_score=299.814;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711200.1,ENST00000711200.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000169;transcript_name=HG003_chrY_T0000169;gene_name=DHRSX;ID=exon:HG003_chrY_T0000169:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2039977	2056360	.	-	.	source_transcript=ENST00000711200.1;source_transcript_name=DHRSX-210;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711200.1;transcript_score=299.814;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711200.1,ENST00000711200.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000169;transcript_name=HG003_chrY_T0000169;gene_name=DHRSX;ID=intron:HG003_chrY_T0000169:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2056361	2056468	.	-	.	source_transcript=ENST00000711200.1;source_transcript_name=DHRSX-210;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711200.1;transcript_score=299.814;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711200.1,ENST00000711200.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000169;transcript_name=HG003_chrY_T0000169;gene_name=DHRSX;ID=exon:HG003_chrY_T0000169:4;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2056469	2133951	.	-	.	source_transcript=ENST00000711200.1;source_transcript_name=DHRSX-210;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711200.1;transcript_score=299.814;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711200.1,ENST00000711200.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000169;transcript_name=HG003_chrY_T0000169;gene_name=DHRSX;ID=intron:HG003_chrY_T0000169:4;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2133952	2133996	.	-	.	source_transcript=ENST00000711200.1;source_transcript_name=DHRSX-210;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711200.1;transcript_score=299.814;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711200.1,ENST00000711200.1;transcript_id=HG003_chrY_T0000169;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000169;transcript_name=HG003_chrY_T0000169;gene_name=DHRSX;ID=exon:HG003_chrY_T0000169:5;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1917266	2131780	100	-	.	source_transcript=ENST00000711199.1;source_transcript_name=DHRSX-209;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711199.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711199.1,ENST00000711199.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_G0000040;transcript_name=HG003_chrY_T0000170;gene_name=DHRSX;ID=HG003_chrY_T0000170;Name=DHRSX
HG003_chrY	CAT	exon	1917266	1917367	.	-	.	source_transcript=ENST00000711199.1;source_transcript_name=DHRSX-209;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711199.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711199.1,ENST00000711199.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000170;transcript_name=HG003_chrY_T0000170;gene_name=DHRSX;ID=exon:HG003_chrY_T0000170:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	1917266	1917338	.	-	0	source_transcript=ENST00000711199.1;source_transcript_name=DHRSX-209;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711199.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711199.1,ENST00000711199.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000170;transcript_name=HG003_chrY_T0000170;gene_name=DHRSX;ID=CDS:HG003_chrY_T0000170:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	1917336	1917338	.	-	0	source_transcript=ENST00000711199.1;source_transcript_name=DHRSX-209;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711199.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711199.1,ENST00000711199.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000170;transcript_name=HG003_chrY_T0000170;gene_name=DHRSX;ID=start_codon:HG003_chrY_T0000170;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1917368	2023456	.	-	.	source_transcript=ENST00000711199.1;source_transcript_name=DHRSX-209;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711199.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711199.1,ENST00000711199.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000170;transcript_name=HG003_chrY_T0000170;gene_name=DHRSX;ID=intron:HG003_chrY_T0000170:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2023457	2023577	.	-	.	source_transcript=ENST00000711199.1;source_transcript_name=DHRSX-209;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711199.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711199.1,ENST00000711199.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000170;transcript_name=HG003_chrY_T0000170;gene_name=DHRSX;ID=exon:HG003_chrY_T0000170:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2023578	2039907	.	-	.	source_transcript=ENST00000711199.1;source_transcript_name=DHRSX-209;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711199.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711199.1,ENST00000711199.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000170;transcript_name=HG003_chrY_T0000170;gene_name=DHRSX;ID=intron:HG003_chrY_T0000170:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2039908	2039976	.	-	.	source_transcript=ENST00000711199.1;source_transcript_name=DHRSX-209;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711199.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711199.1,ENST00000711199.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000170;transcript_name=HG003_chrY_T0000170;gene_name=DHRSX;ID=exon:HG003_chrY_T0000170:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2039977	2056360	.	-	.	source_transcript=ENST00000711199.1;source_transcript_name=DHRSX-209;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711199.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711199.1,ENST00000711199.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000170;transcript_name=HG003_chrY_T0000170;gene_name=DHRSX;ID=intron:HG003_chrY_T0000170:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2056361	2056468	.	-	.	source_transcript=ENST00000711199.1;source_transcript_name=DHRSX-209;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711199.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711199.1,ENST00000711199.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000170;transcript_name=HG003_chrY_T0000170;gene_name=DHRSX;ID=exon:HG003_chrY_T0000170:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2056469	2131501	.	-	.	source_transcript=ENST00000711199.1;source_transcript_name=DHRSX-209;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711199.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711199.1,ENST00000711199.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000170;transcript_name=HG003_chrY_T0000170;gene_name=DHRSX;ID=intron:HG003_chrY_T0000170:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2131502	2131780	.	-	.	source_transcript=ENST00000711199.1;source_transcript_name=DHRSX-209;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711199.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711199.1,ENST00000711199.1;transcript_id=HG003_chrY_T0000170;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000170;transcript_name=HG003_chrY_T0000170;gene_name=DHRSX;ID=exon:HG003_chrY_T0000170:4;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	1968935	2132151	1000	-	.	source_transcript=ENST00000711198.1;source_transcript_name=DHRSX-208;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711198.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711198.1,ENST00000711198.1;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_G0000040;transcript_name=HG003_chrY_T0000172;gene_name=DHRSX;ID=HG003_chrY_T0000172;Name=DHRSX
HG003_chrY	CAT	exon	1968935	1969103	.	-	.	source_transcript=ENST00000711198.1;source_transcript_name=DHRSX-208;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711198.1,ENST00000711198.1;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000172;transcript_name=HG003_chrY_T0000172;gene_name=DHRSX;ID=exon:HG003_chrY_T0000172:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1969104	2039907	.	-	.	source_transcript=ENST00000711198.1;source_transcript_name=DHRSX-208;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711198.1,ENST00000711198.1;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000172;transcript_name=HG003_chrY_T0000172;gene_name=DHRSX;ID=intron:HG003_chrY_T0000172:0;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2039908	2039976	.	-	.	source_transcript=ENST00000711198.1;source_transcript_name=DHRSX-208;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711198.1,ENST00000711198.1;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000172;transcript_name=HG003_chrY_T0000172;gene_name=DHRSX;ID=exon:HG003_chrY_T0000172:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2039977	2056360	.	-	.	source_transcript=ENST00000711198.1;source_transcript_name=DHRSX-208;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711198.1,ENST00000711198.1;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000172;transcript_name=HG003_chrY_T0000172;gene_name=DHRSX;ID=intron:HG003_chrY_T0000172:1;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2056361	2056468	.	-	.	source_transcript=ENST00000711198.1;source_transcript_name=DHRSX-208;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711198.1,ENST00000711198.1;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000172;transcript_name=HG003_chrY_T0000172;gene_name=DHRSX;ID=exon:HG003_chrY_T0000172:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2056469	2132007	.	-	.	source_transcript=ENST00000711198.1;source_transcript_name=DHRSX-208;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711198.1,ENST00000711198.1;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000172;transcript_name=HG003_chrY_T0000172;gene_name=DHRSX;ID=intron:HG003_chrY_T0000172:2;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2132008	2132151	.	-	.	source_transcript=ENST00000711198.1;source_transcript_name=DHRSX-208;source_gene=ENSG00000292338.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292338.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX;alternative_source_transcripts=ENST00000711198.1,ENST00000711198.1;transcript_id=HG003_chrY_T0000172;gene_id=HG003_chrY_G0000040;Parent=HG003_chrY_T0000172;transcript_name=HG003_chrY_T0000172;gene_name=DHRSX;ID=exon:HG003_chrY_T0000172:3;Name=DHRSX;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	1965402	1967518	.	-	.	source_gene_common_name=DHRSX-IT1;source_gene=ENSG00000292337.1;alternative_source_transcripts=ENST00000711205.1,ENST00000711205.1;gene_id=HG003_chrY_G0000041;gene_biotype=lncRNA;gene_name=DHRSX-IT1;gene_sources=liftoff;ID=HG003_chrY_G0000041;Name=DHRSX-IT1
HG003_chrY	CAT	transcript	1965402	1967518	1000	-	.	source_transcript=ENST00000711205.1;source_transcript_name=DHRSX-IT1-202;source_gene=ENSG00000292337.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292337.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711205.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711205.1;transcript_score=299.693;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX-IT1;alternative_source_transcripts=ENST00000711205.1,ENST00000711205.1;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000041;Parent=HG003_chrY_G0000041;transcript_name=HG003_chrY_T0000171;gene_name=DHRSX-IT1;ID=HG003_chrY_T0000171;Name=DHRSX-IT1
HG003_chrY	CAT	exon	1965402	1966026	.	-	.	source_transcript=ENST00000711205.1;source_transcript_name=DHRSX-IT1-202;source_gene=ENSG00000292337.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292337.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711205.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711205.1;transcript_score=299.693;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX-IT1;alternative_source_transcripts=ENST00000711205.1,ENST00000711205.1;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000041;Parent=HG003_chrY_T0000171;transcript_name=HG003_chrY_T0000171;gene_name=DHRSX-IT1;ID=exon:HG003_chrY_T0000171:0;Name=DHRSX-IT1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	1966027	1967492	.	-	.	source_transcript=ENST00000711205.1;source_transcript_name=DHRSX-IT1-202;source_gene=ENSG00000292337.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292337.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711205.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711205.1;transcript_score=299.693;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX-IT1;alternative_source_transcripts=ENST00000711205.1,ENST00000711205.1;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000041;Parent=HG003_chrY_T0000171;transcript_name=HG003_chrY_T0000171;gene_name=DHRSX-IT1;ID=intron:HG003_chrY_T0000171:0;Name=DHRSX-IT1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	1967493	1967518	.	-	.	source_transcript=ENST00000711205.1;source_transcript_name=DHRSX-IT1-202;source_gene=ENSG00000292337.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292337.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711205.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711205.1;transcript_score=299.693;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DHRSX-IT1;alternative_source_transcripts=ENST00000711205.1,ENST00000711205.1;transcript_id=HG003_chrY_T0000171;gene_id=HG003_chrY_G0000041;Parent=HG003_chrY_T0000171;transcript_name=HG003_chrY_T0000171;gene_name=DHRSX-IT1;ID=exon:HG003_chrY_T0000171:1;Name=DHRSX-IT1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2004118	2004229	.	-	.	source_gene_common_name=ENSG00000310552;source_gene=ENSG00000310552.1;alternative_source_transcripts=ENST00000850728.1,ENST00000850728.1;gene_id=HG003_chrY_G0000042;gene_biotype=lncRNA;gene_name=ENSG00000310552;gene_sources=liftoff;ID=HG003_chrY_G0000042;Name=ENSG00000310552
HG003_chrY	CAT	transcript	2004118	2004229	1000	-	.	source_transcript=ENST00000850728.1;source_transcript_name=ENST00000850728;source_gene=ENSG00000310552.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310552.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850728.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310552;alternative_source_transcripts=ENST00000850728.1,ENST00000850728.1;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_G0000042;transcript_name=HG003_chrY_T0000173;gene_name=ENSG00000310552;ID=HG003_chrY_T0000173;Name=ENSG00000310552
HG003_chrY	CAT	exon	2004118	2004229	.	-	.	source_transcript=ENST00000850728.1;source_transcript_name=ENST00000850728;source_gene=ENSG00000310552.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310552.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850728.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310552;alternative_source_transcripts=ENST00000850728.1,ENST00000850728.1;transcript_id=HG003_chrY_T0000173;gene_id=HG003_chrY_G0000042;Parent=HG003_chrY_T0000173;transcript_name=HG003_chrY_T0000173;gene_name=ENSG00000310552;ID=exon:HG003_chrY_T0000173:0;Name=ENSG00000310552;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2117602	2132167	.	-	.	source_gene_common_name=ZBED1;source_gene=ENSG00000292345.1;alternative_source_transcripts=ENST00000711172.1,ENST00000711172.1;gene_id=HG003_chrY_G0000043;gene_biotype=protein_coding;gene_name=ZBED1;gene_sources=liftoff;ID=HG003_chrY_G0000043;Name=ZBED1
HG003_chrY	CAT	transcript	2117602	2132158	100	-	.	source_transcript=ENST00000711172.1;source_transcript_name=ZBED1-211;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711172.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711172.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711172.1,ENST00000711172.1;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_G0000043;transcript_name=HG003_chrY_T0000174;gene_name=ZBED1;ID=HG003_chrY_T0000174;Name=ZBED1
HG003_chrY	CAT	exon	2117602	2121960	.	-	.	source_transcript=ENST00000711172.1;source_transcript_name=ZBED1-211;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711172.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711172.1,ENST00000711172.1;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000174;transcript_name=HG003_chrY_T0000174;gene_name=ZBED1;ID=exon:HG003_chrY_T0000174:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2119823	2121907	.	-	0	source_transcript=ENST00000711172.1;source_transcript_name=ZBED1-211;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711172.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711172.1,ENST00000711172.1;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000174;transcript_name=HG003_chrY_T0000174;gene_name=ZBED1;ID=CDS:HG003_chrY_T0000174:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2119823	2119825	.	-	0	source_transcript=ENST00000711172.1;source_transcript_name=ZBED1-211;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711172.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711172.1,ENST00000711172.1;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000174;transcript_name=HG003_chrY_T0000174;gene_name=ZBED1;ID=stop_codon:HG003_chrY_T0000174;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2121905	2121907	.	-	0	source_transcript=ENST00000711172.1;source_transcript_name=ZBED1-211;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711172.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711172.1,ENST00000711172.1;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000174;transcript_name=HG003_chrY_T0000174;gene_name=ZBED1;ID=start_codon:HG003_chrY_T0000174;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2121961	2132007	.	-	.	source_transcript=ENST00000711172.1;source_transcript_name=ZBED1-211;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711172.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711172.1,ENST00000711172.1;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000174;transcript_name=HG003_chrY_T0000174;gene_name=ZBED1;ID=intron:HG003_chrY_T0000174:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2132008	2132158	.	-	.	source_transcript=ENST00000711172.1;source_transcript_name=ZBED1-211;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711172.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711172.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711172.1,ENST00000711172.1;transcript_id=HG003_chrY_T0000174;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000174;transcript_name=HG003_chrY_T0000174;gene_name=ZBED1;ID=exon:HG003_chrY_T0000174:1;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2117602	2132158	100	-	.	source_transcript=ENST00000711173.1;source_transcript_name=ZBED1-212;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711173.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711173.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711173.1,ENST00000711173.1;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_G0000043;transcript_name=HG003_chrY_T0000175;gene_name=ZBED1;ID=HG003_chrY_T0000175;Name=ZBED1
HG003_chrY	CAT	exon	2117602	2121957	.	-	.	source_transcript=ENST00000711173.1;source_transcript_name=ZBED1-212;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711173.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711173.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711173.1,ENST00000711173.1;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000175;transcript_name=HG003_chrY_T0000175;gene_name=ZBED1;ID=exon:HG003_chrY_T0000175:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2119823	2121907	.	-	0	source_transcript=ENST00000711173.1;source_transcript_name=ZBED1-212;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711173.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711173.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711173.1,ENST00000711173.1;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000175;transcript_name=HG003_chrY_T0000175;gene_name=ZBED1;ID=CDS:HG003_chrY_T0000175:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2119823	2119825	.	-	0	source_transcript=ENST00000711173.1;source_transcript_name=ZBED1-212;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711173.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711173.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711173.1,ENST00000711173.1;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000175;transcript_name=HG003_chrY_T0000175;gene_name=ZBED1;ID=stop_codon:HG003_chrY_T0000175;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2121905	2121907	.	-	0	source_transcript=ENST00000711173.1;source_transcript_name=ZBED1-212;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711173.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711173.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711173.1,ENST00000711173.1;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000175;transcript_name=HG003_chrY_T0000175;gene_name=ZBED1;ID=start_codon:HG003_chrY_T0000175;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2121958	2132007	.	-	.	source_transcript=ENST00000711173.1;source_transcript_name=ZBED1-212;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711173.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711173.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711173.1,ENST00000711173.1;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000175;transcript_name=HG003_chrY_T0000175;gene_name=ZBED1;ID=intron:HG003_chrY_T0000175:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2132008	2132158	.	-	.	source_transcript=ENST00000711173.1;source_transcript_name=ZBED1-212;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711173.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711173.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711173.1,ENST00000711173.1;transcript_id=HG003_chrY_T0000175;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000175;transcript_name=HG003_chrY_T0000175;gene_name=ZBED1;ID=exon:HG003_chrY_T0000175:1;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2117623	2132167	100	-	.	source_transcript=ENST00000711171.1;source_transcript_name=ZBED1-210;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711171.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711171.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711171.1,ENST00000711171.1;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_G0000043;transcript_name=HG003_chrY_T0000176;gene_name=ZBED1;ID=HG003_chrY_T0000176;Name=ZBED1
HG003_chrY	CAT	exon	2117623	2121960	.	-	.	source_transcript=ENST00000711171.1;source_transcript_name=ZBED1-210;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711171.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711171.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711171.1,ENST00000711171.1;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000176;transcript_name=HG003_chrY_T0000176;gene_name=ZBED1;ID=exon:HG003_chrY_T0000176:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2119823	2121907	.	-	0	source_transcript=ENST00000711171.1;source_transcript_name=ZBED1-210;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711171.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711171.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711171.1,ENST00000711171.1;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000176;transcript_name=HG003_chrY_T0000176;gene_name=ZBED1;ID=CDS:HG003_chrY_T0000176:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2119823	2119825	.	-	0	source_transcript=ENST00000711171.1;source_transcript_name=ZBED1-210;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711171.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711171.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711171.1,ENST00000711171.1;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000176;transcript_name=HG003_chrY_T0000176;gene_name=ZBED1;ID=stop_codon:HG003_chrY_T0000176;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2121905	2121907	.	-	0	source_transcript=ENST00000711171.1;source_transcript_name=ZBED1-210;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711171.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711171.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711171.1,ENST00000711171.1;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000176;transcript_name=HG003_chrY_T0000176;gene_name=ZBED1;ID=start_codon:HG003_chrY_T0000176;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2121961	2132007	.	-	.	source_transcript=ENST00000711171.1;source_transcript_name=ZBED1-210;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711171.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711171.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711171.1,ENST00000711171.1;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000176;transcript_name=HG003_chrY_T0000176;gene_name=ZBED1;ID=intron:HG003_chrY_T0000176:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2132008	2132167	.	-	.	source_transcript=ENST00000711171.1;source_transcript_name=ZBED1-210;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711171.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711171.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711171.1,ENST00000711171.1;transcript_id=HG003_chrY_T0000176;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000176;transcript_name=HG003_chrY_T0000176;gene_name=ZBED1;ID=exon:HG003_chrY_T0000176:1;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2118170	2120159	1000	-	.	source_transcript=ENST00000711170.1;source_transcript_name=ZBED1-209;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711170.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711170.1;transcript_score=299.779;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711170.1,ENST00000711170.1;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_G0000043;transcript_name=HG003_chrY_T0000177;gene_name=ZBED1;ID=HG003_chrY_T0000177;Name=ZBED1
HG003_chrY	CAT	exon	2118170	2118890	.	-	.	source_transcript=ENST00000711170.1;source_transcript_name=ZBED1-209;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711170.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711170.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711170.1,ENST00000711170.1;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000177;transcript_name=HG003_chrY_T0000177;gene_name=ZBED1;ID=exon:HG003_chrY_T0000177:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2118891	2119975	.	-	.	source_transcript=ENST00000711170.1;source_transcript_name=ZBED1-209;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711170.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711170.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711170.1,ENST00000711170.1;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000177;transcript_name=HG003_chrY_T0000177;gene_name=ZBED1;ID=intron:HG003_chrY_T0000177:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2119976	2120159	.	-	.	source_transcript=ENST00000711170.1;source_transcript_name=ZBED1-209;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711170.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711170.1;transcript_score=299.779;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711170.1,ENST00000711170.1;transcript_id=HG003_chrY_T0000177;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000177;transcript_name=HG003_chrY_T0000177;gene_name=ZBED1;ID=exon:HG003_chrY_T0000177:1;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2119374	2131746	100	-	.	source_transcript=ENST00000711169.1;source_transcript_name=ZBED1-208;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711169.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711169.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711169.1,ENST00000711169.1;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_G0000043;transcript_name=HG003_chrY_T0000178;gene_name=ZBED1;ID=HG003_chrY_T0000178;Name=ZBED1
HG003_chrY	CAT	exon	2119374	2121960	.	-	.	source_transcript=ENST00000711169.1;source_transcript_name=ZBED1-208;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711169.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711169.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711169.1,ENST00000711169.1;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000178;transcript_name=HG003_chrY_T0000178;gene_name=ZBED1;ID=exon:HG003_chrY_T0000178:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2119823	2121907	.	-	0	source_transcript=ENST00000711169.1;source_transcript_name=ZBED1-208;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711169.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711169.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711169.1,ENST00000711169.1;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000178;transcript_name=HG003_chrY_T0000178;gene_name=ZBED1;ID=CDS:HG003_chrY_T0000178:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2119823	2119825	.	-	0	source_transcript=ENST00000711169.1;source_transcript_name=ZBED1-208;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711169.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711169.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711169.1,ENST00000711169.1;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000178;transcript_name=HG003_chrY_T0000178;gene_name=ZBED1;ID=stop_codon:HG003_chrY_T0000178;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2121905	2121907	.	-	0	source_transcript=ENST00000711169.1;source_transcript_name=ZBED1-208;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711169.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711169.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711169.1,ENST00000711169.1;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000178;transcript_name=HG003_chrY_T0000178;gene_name=ZBED1;ID=start_codon:HG003_chrY_T0000178;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2121961	2131501	.	-	.	source_transcript=ENST00000711169.1;source_transcript_name=ZBED1-208;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711169.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711169.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711169.1,ENST00000711169.1;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000178;transcript_name=HG003_chrY_T0000178;gene_name=ZBED1;ID=intron:HG003_chrY_T0000178:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2131502	2131746	.	-	.	source_transcript=ENST00000711169.1;source_transcript_name=ZBED1-208;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711169.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711169.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711169.1,ENST00000711169.1;transcript_id=HG003_chrY_T0000178;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000178;transcript_name=HG003_chrY_T0000178;gene_name=ZBED1;ID=exon:HG003_chrY_T0000178:1;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2121093	2132086	100	-	.	source_transcript=ENST00000711168.1;source_transcript_name=ZBED1-207;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711168.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711168.1,ENST00000711168.1;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_G0000043;transcript_name=HG003_chrY_T0000179;gene_name=ZBED1;ID=HG003_chrY_T0000179;Name=ZBED1
HG003_chrY	CAT	exon	2121093	2121960	.	-	.	source_transcript=ENST00000711168.1;source_transcript_name=ZBED1-207;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711168.1,ENST00000711168.1;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000179;transcript_name=HG003_chrY_T0000179;gene_name=ZBED1;ID=exon:HG003_chrY_T0000179:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2121093	2121907	.	-	0	source_transcript=ENST00000711168.1;source_transcript_name=ZBED1-207;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711168.1,ENST00000711168.1;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000179;transcript_name=HG003_chrY_T0000179;gene_name=ZBED1;ID=CDS:HG003_chrY_T0000179:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2121905	2121907	.	-	0	source_transcript=ENST00000711168.1;source_transcript_name=ZBED1-207;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711168.1,ENST00000711168.1;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000179;transcript_name=HG003_chrY_T0000179;gene_name=ZBED1;ID=start_codon:HG003_chrY_T0000179;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2121961	2132007	.	-	.	source_transcript=ENST00000711168.1;source_transcript_name=ZBED1-207;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711168.1,ENST00000711168.1;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000179;transcript_name=HG003_chrY_T0000179;gene_name=ZBED1;ID=intron:HG003_chrY_T0000179:0;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2132008	2132086	.	-	.	source_transcript=ENST00000711168.1;source_transcript_name=ZBED1-207;source_gene=ENSG00000292345.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292345.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZBED1;alternative_source_transcripts=ENST00000711168.1,ENST00000711168.1;transcript_id=HG003_chrY_T0000179;gene_id=HG003_chrY_G0000043;Parent=HG003_chrY_T0000179;transcript_name=HG003_chrY_T0000179;gene_name=ZBED1;ID=exon:HG003_chrY_T0000179:1;Name=ZBED1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2131436	2134304	.	+	.	source_gene_common_name=ENSG00000310551;source_gene=ENSG00000310551.1;alternative_source_transcripts=ENST00000850727.1,ENST00000850727.1;gene_id=HG003_chrY_G0000044;gene_biotype=lncRNA;gene_name=ENSG00000310551;gene_sources=liftoff;ID=HG003_chrY_G0000044;Name=ENSG00000310551
HG003_chrY	CAT	transcript	2131436	2134304	1000	+	.	source_transcript=ENST00000850727.1;source_transcript_name=ENST00000850727;source_gene=ENSG00000310551.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310551.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850727.1;transcript_score=299.194;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310551;alternative_source_transcripts=ENST00000850727.1,ENST00000850727.1;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_G0000044;transcript_name=HG003_chrY_T0000180;gene_name=ENSG00000310551;ID=HG003_chrY_T0000180;Name=ENSG00000310551
HG003_chrY	CAT	exon	2131436	2131507	.	+	.	source_transcript=ENST00000850727.1;source_transcript_name=ENST00000850727;source_gene=ENSG00000310551.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310551.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850727.1;transcript_score=299.194;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310551;alternative_source_transcripts=ENST00000850727.1,ENST00000850727.1;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000180;transcript_name=HG003_chrY_T0000180;gene_name=ENSG00000310551;ID=exon:HG003_chrY_T0000180:0;Name=ENSG00000310551;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2131508	2134004	.	+	.	source_transcript=ENST00000850727.1;source_transcript_name=ENST00000850727;source_gene=ENSG00000310551.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310551.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850727.1;transcript_score=299.194;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310551;alternative_source_transcripts=ENST00000850727.1,ENST00000850727.1;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000180;transcript_name=HG003_chrY_T0000180;gene_name=ENSG00000310551;ID=intron:HG003_chrY_T0000180:0;Name=ENSG00000310551;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2134005	2134304	.	+	.	source_transcript=ENST00000850727.1;source_transcript_name=ENST00000850727;source_gene=ENSG00000310551.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310551.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850727.1;transcript_score=299.194;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310551;alternative_source_transcripts=ENST00000850727.1,ENST00000850727.1;transcript_id=HG003_chrY_T0000180;gene_id=HG003_chrY_G0000044;Parent=HG003_chrY_T0000180;transcript_name=HG003_chrY_T0000180;gene_name=ENSG00000310551;ID=exon:HG003_chrY_T0000180:1;Name=ENSG00000310551;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2197022	2240638	.	-	.	source_gene_common_name=LINC03112;source_gene=ENSG00000292360.2;alternative_source_transcripts=ENST00000850835.1,ENST00000850835.1;gene_id=HG003_chrY_G0000045;gene_biotype=lncRNA;gene_name=LINC03112;gene_sources=liftoff;ID=HG003_chrY_G0000045;Name=LINC03112
HG003_chrY	CAT	transcript	2197022	2240638	1000	-	.	source_transcript=ENST00000850835.1;source_transcript_name=LINC03112-257;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850835.1;transcript_score=299.931;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850835.1,ENST00000850835.1;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000181;gene_name=LINC03112;ID=HG003_chrY_T0000181;Name=LINC03112
HG003_chrY	CAT	exon	2197022	2198292	.	-	.	source_transcript=ENST00000850835.1;source_transcript_name=LINC03112-257;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850835.1;transcript_score=299.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850835.1,ENST00000850835.1;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000181;transcript_name=HG003_chrY_T0000181;gene_name=LINC03112;ID=exon:HG003_chrY_T0000181:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2240451	.	-	.	source_transcript=ENST00000850835.1;source_transcript_name=LINC03112-257;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850835.1;transcript_score=299.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850835.1,ENST00000850835.1;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000181;transcript_name=HG003_chrY_T0000181;gene_name=LINC03112;ID=intron:HG003_chrY_T0000181:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240638	.	-	.	source_transcript=ENST00000850835.1;source_transcript_name=LINC03112-257;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850835.1;transcript_score=299.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850835.1,ENST00000850835.1;transcript_id=HG003_chrY_T0000181;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000181;transcript_name=HG003_chrY_T0000181;gene_name=LINC03112;ID=exon:HG003_chrY_T0000181:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197024	2240551	1000	-	.	source_transcript=ENST00000850842.1;source_transcript_name=LINC03112-262;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850842.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850842.1;transcript_score=299.869;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850842.1,ENST00000850842.1;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000182;gene_name=LINC03112;ID=HG003_chrY_T0000182;Name=LINC03112
HG003_chrY	CAT	exon	2197024	2198292	.	-	.	source_transcript=ENST00000850842.1;source_transcript_name=LINC03112-262;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850842.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850842.1;transcript_score=299.869;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850842.1,ENST00000850842.1;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000182;transcript_name=HG003_chrY_T0000182;gene_name=LINC03112;ID=exon:HG003_chrY_T0000182:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850842.1;source_transcript_name=LINC03112-262;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850842.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850842.1;transcript_score=299.869;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850842.1,ENST00000850842.1;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000182;transcript_name=HG003_chrY_T0000182;gene_name=LINC03112;ID=intron:HG003_chrY_T0000182:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=ENST00000850842.1;source_transcript_name=LINC03112-262;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850842.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850842.1;transcript_score=299.869;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850842.1,ENST00000850842.1;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000182;transcript_name=HG003_chrY_T0000182;gene_name=LINC03112;ID=exon:HG003_chrY_T0000182:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2240451	.	-	.	source_transcript=ENST00000850842.1;source_transcript_name=LINC03112-262;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850842.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850842.1;transcript_score=299.869;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850842.1,ENST00000850842.1;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000182;transcript_name=HG003_chrY_T0000182;gene_name=LINC03112;ID=intron:HG003_chrY_T0000182:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240551	.	-	.	source_transcript=ENST00000850842.1;source_transcript_name=LINC03112-262;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850842.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850842.1;transcript_score=299.869;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850842.1,ENST00000850842.1;transcript_id=HG003_chrY_T0000182;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000182;transcript_name=HG003_chrY_T0000182;gene_name=LINC03112;ID=exon:HG003_chrY_T0000182:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197025	2240538	1000	-	.	source_transcript=ENST00000850797.1;source_transcript_name=LINC03112-236;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850797.1;transcript_score=299.88800000000003;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850797.1,ENST00000850797.1;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000183;gene_name=LINC03112;ID=HG003_chrY_T0000183;Name=LINC03112
HG003_chrY	CAT	exon	2197025	2198292	.	-	.	source_transcript=ENST00000850797.1;source_transcript_name=LINC03112-236;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850797.1;transcript_score=299.88800000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850797.1,ENST00000850797.1;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000183;transcript_name=HG003_chrY_T0000183;gene_name=LINC03112;ID=exon:HG003_chrY_T0000183:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850797.1;source_transcript_name=LINC03112-236;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850797.1;transcript_score=299.88800000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850797.1,ENST00000850797.1;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000183;transcript_name=HG003_chrY_T0000183;gene_name=LINC03112;ID=intron:HG003_chrY_T0000183:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=ENST00000850797.1;source_transcript_name=LINC03112-236;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850797.1;transcript_score=299.88800000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850797.1,ENST00000850797.1;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000183;transcript_name=HG003_chrY_T0000183;gene_name=LINC03112;ID=exon:HG003_chrY_T0000183:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2236341	.	-	.	source_transcript=ENST00000850797.1;source_transcript_name=LINC03112-236;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850797.1;transcript_score=299.88800000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850797.1,ENST00000850797.1;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000183;transcript_name=HG003_chrY_T0000183;gene_name=LINC03112;ID=intron:HG003_chrY_T0000183:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2236342	2236623	.	-	.	source_transcript=ENST00000850797.1;source_transcript_name=LINC03112-236;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850797.1;transcript_score=299.88800000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850797.1,ENST00000850797.1;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000183;transcript_name=HG003_chrY_T0000183;gene_name=LINC03112;ID=exon:HG003_chrY_T0000183:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2236624	2240451	.	-	.	source_transcript=ENST00000850797.1;source_transcript_name=LINC03112-236;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850797.1;transcript_score=299.88800000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850797.1,ENST00000850797.1;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000183;transcript_name=HG003_chrY_T0000183;gene_name=LINC03112;ID=intron:HG003_chrY_T0000183:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240538	.	-	.	source_transcript=ENST00000850797.1;source_transcript_name=LINC03112-236;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850797.1;transcript_score=299.88800000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850797.1,ENST00000850797.1;transcript_id=HG003_chrY_T0000183;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000183;transcript_name=HG003_chrY_T0000183;gene_name=LINC03112;ID=exon:HG003_chrY_T0000183:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197025	2240557	1000	-	.	source_transcript=ENST00000850837.1;source_transcript_name=LINC03112-258;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850837.1;transcript_score=299.826;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850837.1,ENST00000850837.1;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000184;gene_name=LINC03112;ID=HG003_chrY_T0000184;Name=LINC03112
HG003_chrY	CAT	exon	2197025	2198292	.	-	.	source_transcript=ENST00000850837.1;source_transcript_name=LINC03112-258;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850837.1;transcript_score=299.826;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850837.1,ENST00000850837.1;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000184;transcript_name=HG003_chrY_T0000184;gene_name=LINC03112;ID=exon:HG003_chrY_T0000184:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850837.1;source_transcript_name=LINC03112-258;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850837.1;transcript_score=299.826;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850837.1,ENST00000850837.1;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000184;transcript_name=HG003_chrY_T0000184;gene_name=LINC03112;ID=intron:HG003_chrY_T0000184:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=ENST00000850837.1;source_transcript_name=LINC03112-258;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850837.1;transcript_score=299.826;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850837.1,ENST00000850837.1;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000184;transcript_name=HG003_chrY_T0000184;gene_name=LINC03112;ID=exon:HG003_chrY_T0000184:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2205057	.	-	.	source_transcript=ENST00000850837.1;source_transcript_name=LINC03112-258;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850837.1;transcript_score=299.826;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850837.1,ENST00000850837.1;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000184;transcript_name=HG003_chrY_T0000184;gene_name=LINC03112;ID=intron:HG003_chrY_T0000184:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205058	2205251	.	-	.	source_transcript=ENST00000850837.1;source_transcript_name=LINC03112-258;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850837.1;transcript_score=299.826;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850837.1,ENST00000850837.1;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000184;transcript_name=HG003_chrY_T0000184;gene_name=LINC03112;ID=exon:HG003_chrY_T0000184:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2205252	2240451	.	-	.	source_transcript=ENST00000850837.1;source_transcript_name=LINC03112-258;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850837.1;transcript_score=299.826;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850837.1,ENST00000850837.1;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000184;transcript_name=HG003_chrY_T0000184;gene_name=LINC03112;ID=intron:HG003_chrY_T0000184:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240557	.	-	.	source_transcript=ENST00000850837.1;source_transcript_name=LINC03112-258;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850837.1;transcript_score=299.826;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850837.1,ENST00000850837.1;transcript_id=HG003_chrY_T0000184;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000184;transcript_name=HG003_chrY_T0000184;gene_name=LINC03112;ID=exon:HG003_chrY_T0000184:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197026	2240513	1000	-	.	source_transcript=ENST00000850805.1;source_transcript_name=LINC03112-244;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850805.1;transcript_score=299.796;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850805.1,ENST00000850805.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000185;gene_name=LINC03112;ID=HG003_chrY_T0000185;Name=LINC03112
HG003_chrY	CAT	exon	2197026	2197645	.	-	.	source_transcript=ENST00000850805.1;source_transcript_name=LINC03112-244;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850805.1;transcript_score=299.796;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850805.1,ENST00000850805.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000185;transcript_name=HG003_chrY_T0000185;gene_name=LINC03112;ID=exon:HG003_chrY_T0000185:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2197646	2198084	.	-	.	source_transcript=ENST00000850805.1;source_transcript_name=LINC03112-244;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850805.1;transcript_score=299.796;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850805.1,ENST00000850805.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000185;transcript_name=HG003_chrY_T0000185;gene_name=LINC03112;ID=intron:HG003_chrY_T0000185:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2198085	2198292	.	-	.	source_transcript=ENST00000850805.1;source_transcript_name=LINC03112-244;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850805.1;transcript_score=299.796;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850805.1,ENST00000850805.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000185;transcript_name=HG003_chrY_T0000185;gene_name=LINC03112;ID=exon:HG003_chrY_T0000185:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850805.1;source_transcript_name=LINC03112-244;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850805.1;transcript_score=299.796;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850805.1,ENST00000850805.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000185;transcript_name=HG003_chrY_T0000185;gene_name=LINC03112;ID=intron:HG003_chrY_T0000185:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201097	.	-	.	source_transcript=ENST00000850805.1;source_transcript_name=LINC03112-244;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850805.1;transcript_score=299.796;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850805.1,ENST00000850805.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000185;transcript_name=HG003_chrY_T0000185;gene_name=LINC03112;ID=exon:HG003_chrY_T0000185:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201098	2240451	.	-	.	source_transcript=ENST00000850805.1;source_transcript_name=LINC03112-244;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850805.1;transcript_score=299.796;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850805.1,ENST00000850805.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000185;transcript_name=HG003_chrY_T0000185;gene_name=LINC03112;ID=intron:HG003_chrY_T0000185:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240513	.	-	.	source_transcript=ENST00000850805.1;source_transcript_name=LINC03112-244;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850805.1;transcript_score=299.796;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850805.1,ENST00000850805.1;transcript_id=HG003_chrY_T0000185;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000185;transcript_name=HG003_chrY_T0000185;gene_name=LINC03112;ID=exon:HG003_chrY_T0000185:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197027	2240537	1000	-	.	source_transcript=ENST00000711240.1;source_transcript_name=LINC03112-233;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711240.1;transcript_score=299.93399999999997;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000711240.1,ENST00000711240.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000186;gene_name=LINC03112;ID=HG003_chrY_T0000186;Name=LINC03112
HG003_chrY	CAT	exon	2197027	2198292	.	-	.	source_transcript=ENST00000711240.1;source_transcript_name=LINC03112-233;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711240.1;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000711240.1,ENST00000711240.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000186;transcript_name=HG003_chrY_T0000186;gene_name=LINC03112;ID=exon:HG003_chrY_T0000186:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2228639	.	-	.	source_transcript=ENST00000711240.1;source_transcript_name=LINC03112-233;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711240.1;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000711240.1,ENST00000711240.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000186;transcript_name=HG003_chrY_T0000186;gene_name=LINC03112;ID=intron:HG003_chrY_T0000186:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2228640	2228797	.	-	.	source_transcript=ENST00000711240.1;source_transcript_name=LINC03112-233;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711240.1;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000711240.1,ENST00000711240.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000186;transcript_name=HG003_chrY_T0000186;gene_name=LINC03112;ID=exon:HG003_chrY_T0000186:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2228798	2240451	.	-	.	source_transcript=ENST00000711240.1;source_transcript_name=LINC03112-233;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711240.1;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000711240.1,ENST00000711240.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000186;transcript_name=HG003_chrY_T0000186;gene_name=LINC03112;ID=intron:HG003_chrY_T0000186:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240537	.	-	.	source_transcript=ENST00000711240.1;source_transcript_name=LINC03112-233;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711240.1;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000711240.1,ENST00000711240.1;transcript_id=HG003_chrY_T0000186;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000186;transcript_name=HG003_chrY_T0000186;gene_name=LINC03112;ID=exon:HG003_chrY_T0000186:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197027	2240514	1000	-	.	source_transcript=ENST00000850671.1;source_transcript_name=LINC03112-234;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850671.1;transcript_score=299.812;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850671.1,ENST00000850671.1;transcript_id=HG003_chrY_T0000187;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000187;gene_name=LINC03112;ID=HG003_chrY_T0000187;Name=LINC03112
HG003_chrY	CAT	exon	2197027	2198292	.	-	.	source_transcript=ENST00000850671.1;source_transcript_name=LINC03112-234;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850671.1;transcript_score=299.812;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850671.1,ENST00000850671.1;transcript_id=HG003_chrY_T0000187;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000187;transcript_name=HG003_chrY_T0000187;gene_name=LINC03112;ID=exon:HG003_chrY_T0000187:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850671.1;source_transcript_name=LINC03112-234;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850671.1;transcript_score=299.812;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850671.1,ENST00000850671.1;transcript_id=HG003_chrY_T0000187;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000187;transcript_name=HG003_chrY_T0000187;gene_name=LINC03112;ID=intron:HG003_chrY_T0000187:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201097	.	-	.	source_transcript=ENST00000850671.1;source_transcript_name=LINC03112-234;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850671.1;transcript_score=299.812;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850671.1,ENST00000850671.1;transcript_id=HG003_chrY_T0000187;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000187;transcript_name=HG003_chrY_T0000187;gene_name=LINC03112;ID=exon:HG003_chrY_T0000187:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201098	2205074	.	-	.	source_transcript=ENST00000850671.1;source_transcript_name=LINC03112-234;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850671.1;transcript_score=299.812;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850671.1,ENST00000850671.1;transcript_id=HG003_chrY_T0000187;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000187;transcript_name=HG003_chrY_T0000187;gene_name=LINC03112;ID=intron:HG003_chrY_T0000187:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205075	2205251	.	-	.	source_transcript=ENST00000850671.1;source_transcript_name=LINC03112-234;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850671.1;transcript_score=299.812;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850671.1,ENST00000850671.1;transcript_id=HG003_chrY_T0000187;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000187;transcript_name=HG003_chrY_T0000187;gene_name=LINC03112;ID=exon:HG003_chrY_T0000187:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2205252	2240451	.	-	.	source_transcript=ENST00000850671.1;source_transcript_name=LINC03112-234;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850671.1;transcript_score=299.812;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850671.1,ENST00000850671.1;transcript_id=HG003_chrY_T0000187;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000187;transcript_name=HG003_chrY_T0000187;gene_name=LINC03112;ID=intron:HG003_chrY_T0000187:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240514	.	-	.	source_transcript=ENST00000850671.1;source_transcript_name=LINC03112-234;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850671.1;transcript_score=299.812;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850671.1,ENST00000850671.1;transcript_id=HG003_chrY_T0000187;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000187;transcript_name=HG003_chrY_T0000187;gene_name=LINC03112;ID=exon:HG003_chrY_T0000187:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197027	2240542	1000	-	.	source_transcript=ENST00000850796.1;source_transcript_name=LINC03112-235;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850796.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850796.1;transcript_score=299.93899999999996;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850796.1,ENST00000850796.1;transcript_id=HG003_chrY_T0000188;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000188;gene_name=LINC03112;ID=HG003_chrY_T0000188;Name=LINC03112
HG003_chrY	CAT	exon	2197027	2198292	.	-	.	source_transcript=ENST00000850796.1;source_transcript_name=LINC03112-235;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850796.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850796.1;transcript_score=299.93899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850796.1,ENST00000850796.1;transcript_id=HG003_chrY_T0000188;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000188;transcript_name=HG003_chrY_T0000188;gene_name=LINC03112;ID=exon:HG003_chrY_T0000188:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2236341	.	-	.	source_transcript=ENST00000850796.1;source_transcript_name=LINC03112-235;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850796.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850796.1;transcript_score=299.93899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850796.1,ENST00000850796.1;transcript_id=HG003_chrY_T0000188;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000188;transcript_name=HG003_chrY_T0000188;gene_name=LINC03112;ID=intron:HG003_chrY_T0000188:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2236342	2236623	.	-	.	source_transcript=ENST00000850796.1;source_transcript_name=LINC03112-235;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850796.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850796.1;transcript_score=299.93899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850796.1,ENST00000850796.1;transcript_id=HG003_chrY_T0000188;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000188;transcript_name=HG003_chrY_T0000188;gene_name=LINC03112;ID=exon:HG003_chrY_T0000188:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2236624	2240451	.	-	.	source_transcript=ENST00000850796.1;source_transcript_name=LINC03112-235;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850796.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850796.1;transcript_score=299.93899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850796.1,ENST00000850796.1;transcript_id=HG003_chrY_T0000188;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000188;transcript_name=HG003_chrY_T0000188;gene_name=LINC03112;ID=intron:HG003_chrY_T0000188:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240542	.	-	.	source_transcript=ENST00000850796.1;source_transcript_name=LINC03112-235;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850796.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850796.1;transcript_score=299.93899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850796.1,ENST00000850796.1;transcript_id=HG003_chrY_T0000188;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000188;transcript_name=HG003_chrY_T0000188;gene_name=LINC03112;ID=exon:HG003_chrY_T0000188:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197027	2240540	1000	-	.	source_transcript=ENST00000850798.1;source_transcript_name=LINC03112-237;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850798.1;transcript_score=299.813;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850798.1,ENST00000850798.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000189;gene_name=LINC03112;ID=HG003_chrY_T0000189;Name=LINC03112
HG003_chrY	CAT	exon	2197027	2198292	.	-	.	source_transcript=ENST00000850798.1;source_transcript_name=LINC03112-237;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850798.1;transcript_score=299.813;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850798.1,ENST00000850798.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000189;transcript_name=HG003_chrY_T0000189;gene_name=LINC03112;ID=exon:HG003_chrY_T0000189:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850798.1;source_transcript_name=LINC03112-237;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850798.1;transcript_score=299.813;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850798.1,ENST00000850798.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000189;transcript_name=HG003_chrY_T0000189;gene_name=LINC03112;ID=intron:HG003_chrY_T0000189:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=ENST00000850798.1;source_transcript_name=LINC03112-237;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850798.1;transcript_score=299.813;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850798.1,ENST00000850798.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000189;transcript_name=HG003_chrY_T0000189;gene_name=LINC03112;ID=exon:HG003_chrY_T0000189:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2205159	.	-	.	source_transcript=ENST00000850798.1;source_transcript_name=LINC03112-237;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850798.1;transcript_score=299.813;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850798.1,ENST00000850798.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000189;transcript_name=HG003_chrY_T0000189;gene_name=LINC03112;ID=intron:HG003_chrY_T0000189:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205160	2205251	.	-	.	source_transcript=ENST00000850798.1;source_transcript_name=LINC03112-237;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850798.1;transcript_score=299.813;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850798.1,ENST00000850798.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000189;transcript_name=HG003_chrY_T0000189;gene_name=LINC03112;ID=exon:HG003_chrY_T0000189:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2205252	2240451	.	-	.	source_transcript=ENST00000850798.1;source_transcript_name=LINC03112-237;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850798.1;transcript_score=299.813;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850798.1,ENST00000850798.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000189;transcript_name=HG003_chrY_T0000189;gene_name=LINC03112;ID=intron:HG003_chrY_T0000189:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240540	.	-	.	source_transcript=ENST00000850798.1;source_transcript_name=LINC03112-237;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850798.1;transcript_score=299.813;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850798.1,ENST00000850798.1;transcript_id=HG003_chrY_T0000189;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000189;transcript_name=HG003_chrY_T0000189;gene_name=LINC03112;ID=exon:HG003_chrY_T0000189:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197027	2240524	1000	-	.	source_transcript=ENST00000850802.1;source_transcript_name=LINC03112-241;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850802.1;transcript_score=299.752;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850802.1,ENST00000850802.1;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000190;gene_name=LINC03112;ID=HG003_chrY_T0000190;Name=LINC03112
HG003_chrY	CAT	exon	2197027	2197148	.	-	.	source_transcript=ENST00000850802.1;source_transcript_name=LINC03112-241;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850802.1;transcript_score=299.752;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850802.1,ENST00000850802.1;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000190;transcript_name=HG003_chrY_T0000190;gene_name=LINC03112;ID=exon:HG003_chrY_T0000190:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2197149	2198084	.	-	.	source_transcript=ENST00000850802.1;source_transcript_name=LINC03112-241;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850802.1;transcript_score=299.752;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850802.1,ENST00000850802.1;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000190;transcript_name=HG003_chrY_T0000190;gene_name=LINC03112;ID=intron:HG003_chrY_T0000190:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2198085	2198292	.	-	.	source_transcript=ENST00000850802.1;source_transcript_name=LINC03112-241;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850802.1;transcript_score=299.752;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850802.1,ENST00000850802.1;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000190;transcript_name=HG003_chrY_T0000190;gene_name=LINC03112;ID=exon:HG003_chrY_T0000190:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2240451	.	-	.	source_transcript=ENST00000850802.1;source_transcript_name=LINC03112-241;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850802.1;transcript_score=299.752;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850802.1,ENST00000850802.1;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000190;transcript_name=HG003_chrY_T0000190;gene_name=LINC03112;ID=intron:HG003_chrY_T0000190:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240524	.	-	.	source_transcript=ENST00000850802.1;source_transcript_name=LINC03112-241;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850802.1;transcript_score=299.752;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850802.1,ENST00000850802.1;transcript_id=HG003_chrY_T0000190;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000190;transcript_name=HG003_chrY_T0000190;gene_name=LINC03112;ID=exon:HG003_chrY_T0000190:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197027	2240507	1000	-	.	source_transcript=ENST00000850809.1;source_transcript_name=LINC03112-248;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850809.1;transcript_score=299.85699999999997;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850809.1,ENST00000850809.1;transcript_id=HG003_chrY_T0000191;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000191;gene_name=LINC03112;ID=HG003_chrY_T0000191;Name=LINC03112
HG003_chrY	CAT	exon	2197027	2198292	.	-	.	source_transcript=ENST00000850809.1;source_transcript_name=LINC03112-248;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850809.1;transcript_score=299.85699999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850809.1,ENST00000850809.1;transcript_id=HG003_chrY_T0000191;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000191;transcript_name=HG003_chrY_T0000191;gene_name=LINC03112;ID=exon:HG003_chrY_T0000191:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2240371	.	-	.	source_transcript=ENST00000850809.1;source_transcript_name=LINC03112-248;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850809.1;transcript_score=299.85699999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850809.1,ENST00000850809.1;transcript_id=HG003_chrY_T0000191;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000191;transcript_name=HG003_chrY_T0000191;gene_name=LINC03112;ID=intron:HG003_chrY_T0000191:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240372	2240507	.	-	.	source_transcript=ENST00000850809.1;source_transcript_name=LINC03112-248;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850809.1;transcript_score=299.85699999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850809.1,ENST00000850809.1;transcript_id=HG003_chrY_T0000191;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000191;transcript_name=HG003_chrY_T0000191;gene_name=LINC03112;ID=exon:HG003_chrY_T0000191:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197027	2215327	1000	-	.	source_transcript=ENST00000850812.1;source_transcript_name=LINC03112-251;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850812.1;transcript_score=299.929;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850812.1,ENST00000850812.1;transcript_id=HG003_chrY_T0000192;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000192;gene_name=LINC03112;ID=HG003_chrY_T0000192;Name=LINC03112
HG003_chrY	CAT	exon	2197027	2198292	.	-	.	source_transcript=ENST00000850812.1;source_transcript_name=LINC03112-251;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850812.1;transcript_score=299.929;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850812.1,ENST00000850812.1;transcript_id=HG003_chrY_T0000192;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000192;transcript_name=HG003_chrY_T0000192;gene_name=LINC03112;ID=exon:HG003_chrY_T0000192:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2215189	.	-	.	source_transcript=ENST00000850812.1;source_transcript_name=LINC03112-251;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850812.1;transcript_score=299.929;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850812.1,ENST00000850812.1;transcript_id=HG003_chrY_T0000192;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000192;transcript_name=HG003_chrY_T0000192;gene_name=LINC03112;ID=intron:HG003_chrY_T0000192:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2215190	2215327	.	-	.	source_transcript=ENST00000850812.1;source_transcript_name=LINC03112-251;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850812.1;transcript_score=299.929;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850812.1,ENST00000850812.1;transcript_id=HG003_chrY_T0000192;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000192;transcript_name=HG003_chrY_T0000192;gene_name=LINC03112;ID=exon:HG003_chrY_T0000192:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197027	2240535	1000	-	.	source_transcript=ENST00000850838.1;source_transcript_name=LINC03112-259;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850838.1;transcript_score=299.822;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850838.1,ENST00000850838.1;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000193;gene_name=LINC03112;ID=HG003_chrY_T0000193;Name=LINC03112
HG003_chrY	CAT	exon	2197027	2198292	.	-	.	source_transcript=ENST00000850838.1;source_transcript_name=LINC03112-259;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850838.1;transcript_score=299.822;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850838.1,ENST00000850838.1;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000193;transcript_name=HG003_chrY_T0000193;gene_name=LINC03112;ID=exon:HG003_chrY_T0000193:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850838.1;source_transcript_name=LINC03112-259;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850838.1;transcript_score=299.822;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850838.1,ENST00000850838.1;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000193;transcript_name=HG003_chrY_T0000193;gene_name=LINC03112;ID=intron:HG003_chrY_T0000193:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=ENST00000850838.1;source_transcript_name=LINC03112-259;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850838.1;transcript_score=299.822;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850838.1,ENST00000850838.1;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000193;transcript_name=HG003_chrY_T0000193;gene_name=LINC03112;ID=exon:HG003_chrY_T0000193:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2205074	.	-	.	source_transcript=ENST00000850838.1;source_transcript_name=LINC03112-259;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850838.1;transcript_score=299.822;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850838.1,ENST00000850838.1;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000193;transcript_name=HG003_chrY_T0000193;gene_name=LINC03112;ID=intron:HG003_chrY_T0000193:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205075	2205251	.	-	.	source_transcript=ENST00000850838.1;source_transcript_name=LINC03112-259;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850838.1;transcript_score=299.822;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850838.1,ENST00000850838.1;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000193;transcript_name=HG003_chrY_T0000193;gene_name=LINC03112;ID=exon:HG003_chrY_T0000193:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2205252	2240451	.	-	.	source_transcript=ENST00000850838.1;source_transcript_name=LINC03112-259;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850838.1;transcript_score=299.822;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850838.1,ENST00000850838.1;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000193;transcript_name=HG003_chrY_T0000193;gene_name=LINC03112;ID=intron:HG003_chrY_T0000193:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240535	.	-	.	source_transcript=ENST00000850838.1;source_transcript_name=LINC03112-259;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850838.1;transcript_score=299.822;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850838.1,ENST00000850838.1;transcript_id=HG003_chrY_T0000193;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000193;transcript_name=HG003_chrY_T0000193;gene_name=LINC03112;ID=exon:HG003_chrY_T0000193:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197027	2240529	1000	-	.	source_transcript=ENST00000850840.1;source_transcript_name=LINC03112-260;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850840.1;transcript_score=299.815;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850840.1,ENST00000850840.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000194;gene_name=LINC03112;ID=HG003_chrY_T0000194;Name=LINC03112
HG003_chrY	CAT	exon	2197027	2198292	.	-	.	source_transcript=ENST00000850840.1;source_transcript_name=LINC03112-260;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850840.1;transcript_score=299.815;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850840.1,ENST00000850840.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000194;transcript_name=HG003_chrY_T0000194;gene_name=LINC03112;ID=exon:HG003_chrY_T0000194:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850840.1;source_transcript_name=LINC03112-260;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850840.1;transcript_score=299.815;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850840.1,ENST00000850840.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000194;transcript_name=HG003_chrY_T0000194;gene_name=LINC03112;ID=intron:HG003_chrY_T0000194:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201097	.	-	.	source_transcript=ENST00000850840.1;source_transcript_name=LINC03112-260;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850840.1;transcript_score=299.815;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850840.1,ENST00000850840.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000194;transcript_name=HG003_chrY_T0000194;gene_name=LINC03112;ID=exon:HG003_chrY_T0000194:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201098	2205057	.	-	.	source_transcript=ENST00000850840.1;source_transcript_name=LINC03112-260;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850840.1;transcript_score=299.815;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850840.1,ENST00000850840.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000194;transcript_name=HG003_chrY_T0000194;gene_name=LINC03112;ID=intron:HG003_chrY_T0000194:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205058	2205251	.	-	.	source_transcript=ENST00000850840.1;source_transcript_name=LINC03112-260;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850840.1;transcript_score=299.815;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850840.1,ENST00000850840.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000194;transcript_name=HG003_chrY_T0000194;gene_name=LINC03112;ID=exon:HG003_chrY_T0000194:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2205252	2240451	.	-	.	source_transcript=ENST00000850840.1;source_transcript_name=LINC03112-260;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850840.1;transcript_score=299.815;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850840.1,ENST00000850840.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000194;transcript_name=HG003_chrY_T0000194;gene_name=LINC03112;ID=intron:HG003_chrY_T0000194:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240529	.	-	.	source_transcript=ENST00000850840.1;source_transcript_name=LINC03112-260;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850840.1;transcript_score=299.815;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850840.1,ENST00000850840.1;transcript_id=HG003_chrY_T0000194;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000194;transcript_name=HG003_chrY_T0000194;gene_name=LINC03112;ID=exon:HG003_chrY_T0000194:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197027	2240531	1000	-	.	source_transcript=ENST00000850841.1;source_transcript_name=LINC03112-261;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850841.1;transcript_score=299.861;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850841.1,ENST00000850841.1;transcript_id=HG003_chrY_T0000195;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000195;gene_name=LINC03112;ID=HG003_chrY_T0000195;Name=LINC03112
HG003_chrY	CAT	exon	2197027	2198292	.	-	.	source_transcript=ENST00000850841.1;source_transcript_name=LINC03112-261;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850841.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850841.1,ENST00000850841.1;transcript_id=HG003_chrY_T0000195;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000195;transcript_name=HG003_chrY_T0000195;gene_name=LINC03112;ID=exon:HG003_chrY_T0000195:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850841.1;source_transcript_name=LINC03112-261;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850841.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850841.1,ENST00000850841.1;transcript_id=HG003_chrY_T0000195;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000195;transcript_name=HG003_chrY_T0000195;gene_name=LINC03112;ID=intron:HG003_chrY_T0000195:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201097	.	-	.	source_transcript=ENST00000850841.1;source_transcript_name=LINC03112-261;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850841.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850841.1,ENST00000850841.1;transcript_id=HG003_chrY_T0000195;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000195;transcript_name=HG003_chrY_T0000195;gene_name=LINC03112;ID=exon:HG003_chrY_T0000195:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201098	2240451	.	-	.	source_transcript=ENST00000850841.1;source_transcript_name=LINC03112-261;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850841.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850841.1,ENST00000850841.1;transcript_id=HG003_chrY_T0000195;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000195;transcript_name=HG003_chrY_T0000195;gene_name=LINC03112;ID=intron:HG003_chrY_T0000195:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240531	.	-	.	source_transcript=ENST00000850841.1;source_transcript_name=LINC03112-261;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850841.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850841.1,ENST00000850841.1;transcript_id=HG003_chrY_T0000195;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000195;transcript_name=HG003_chrY_T0000195;gene_name=LINC03112;ID=exon:HG003_chrY_T0000195:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197028	2240529	1000	-	.	source_transcript=ENST00000711238.1;source_transcript_name=LINC03112-232;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711238.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711238.1;transcript_score=299.868;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000711238.1,ENST00000711238.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000196;gene_name=LINC03112;ID=HG003_chrY_T0000196;Name=LINC03112
HG003_chrY	CAT	exon	2197028	2198292	.	-	.	source_transcript=ENST00000711238.1;source_transcript_name=LINC03112-232;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711238.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711238.1;transcript_score=299.868;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000711238.1,ENST00000711238.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000196;transcript_name=HG003_chrY_T0000196;gene_name=LINC03112;ID=exon:HG003_chrY_T0000196:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2205074	.	-	.	source_transcript=ENST00000711238.1;source_transcript_name=LINC03112-232;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711238.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711238.1;transcript_score=299.868;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000711238.1,ENST00000711238.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000196;transcript_name=HG003_chrY_T0000196;gene_name=LINC03112;ID=intron:HG003_chrY_T0000196:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205075	2205251	.	-	.	source_transcript=ENST00000711238.1;source_transcript_name=LINC03112-232;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711238.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711238.1;transcript_score=299.868;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000711238.1,ENST00000711238.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000196;transcript_name=HG003_chrY_T0000196;gene_name=LINC03112;ID=exon:HG003_chrY_T0000196:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2205252	2240451	.	-	.	source_transcript=ENST00000711238.1;source_transcript_name=LINC03112-232;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711238.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711238.1;transcript_score=299.868;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000711238.1,ENST00000711238.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000196;transcript_name=HG003_chrY_T0000196;gene_name=LINC03112;ID=intron:HG003_chrY_T0000196:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240529	.	-	.	source_transcript=ENST00000711238.1;source_transcript_name=LINC03112-232;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711238.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711238.1;transcript_score=299.868;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000711238.1,ENST00000711238.1;transcript_id=HG003_chrY_T0000196;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000196;transcript_name=HG003_chrY_T0000196;gene_name=LINC03112;ID=exon:HG003_chrY_T0000196:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2240538	1000	-	.	source_transcript=ENST00000850799.1;source_transcript_name=LINC03112-238;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850799.1;transcript_score=299.674;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850799.1,ENST00000850799.1;transcript_id=HG003_chrY_T0000197;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000197;gene_name=LINC03112;ID=HG003_chrY_T0000197;Name=LINC03112
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=ENST00000850799.1;source_transcript_name=LINC03112-238;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850799.1;transcript_score=299.674;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850799.1,ENST00000850799.1;transcript_id=HG003_chrY_T0000197;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000197;transcript_name=HG003_chrY_T0000197;gene_name=LINC03112;ID=exon:HG003_chrY_T0000197:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850799.1;source_transcript_name=LINC03112-238;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850799.1;transcript_score=299.674;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850799.1,ENST00000850799.1;transcript_id=HG003_chrY_T0000197;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000197;transcript_name=HG003_chrY_T0000197;gene_name=LINC03112;ID=intron:HG003_chrY_T0000197:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=ENST00000850799.1;source_transcript_name=LINC03112-238;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850799.1;transcript_score=299.674;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850799.1,ENST00000850799.1;transcript_id=HG003_chrY_T0000197;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000197;transcript_name=HG003_chrY_T0000197;gene_name=LINC03112;ID=exon:HG003_chrY_T0000197:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2204119	.	-	.	source_transcript=ENST00000850799.1;source_transcript_name=LINC03112-238;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850799.1;transcript_score=299.674;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850799.1,ENST00000850799.1;transcript_id=HG003_chrY_T0000197;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000197;transcript_name=HG003_chrY_T0000197;gene_name=LINC03112;ID=intron:HG003_chrY_T0000197:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2204120	2204452	.	-	.	source_transcript=ENST00000850799.1;source_transcript_name=LINC03112-238;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850799.1;transcript_score=299.674;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850799.1,ENST00000850799.1;transcript_id=HG003_chrY_T0000197;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000197;transcript_name=HG003_chrY_T0000197;gene_name=LINC03112;ID=exon:HG003_chrY_T0000197:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2204453	2240451	.	-	.	source_transcript=ENST00000850799.1;source_transcript_name=LINC03112-238;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850799.1;transcript_score=299.674;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850799.1,ENST00000850799.1;transcript_id=HG003_chrY_T0000197;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000197;transcript_name=HG003_chrY_T0000197;gene_name=LINC03112;ID=intron:HG003_chrY_T0000197:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240538	.	-	.	source_transcript=ENST00000850799.1;source_transcript_name=LINC03112-238;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850799.1;transcript_score=299.674;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850799.1,ENST00000850799.1;transcript_id=HG003_chrY_T0000197;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000197;transcript_name=HG003_chrY_T0000197;gene_name=LINC03112;ID=exon:HG003_chrY_T0000197:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2240538	1000	-	.	source_transcript=ENST00000850800.1;source_transcript_name=LINC03112-239;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850800.1;transcript_score=299.824;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850800.1,ENST00000850800.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000198;gene_name=LINC03112;ID=HG003_chrY_T0000198;Name=LINC03112
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=ENST00000850800.1;source_transcript_name=LINC03112-239;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850800.1;transcript_score=299.824;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850800.1,ENST00000850800.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000198;transcript_name=HG003_chrY_T0000198;gene_name=LINC03112;ID=exon:HG003_chrY_T0000198:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850800.1;source_transcript_name=LINC03112-239;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850800.1;transcript_score=299.824;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850800.1,ENST00000850800.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000198;transcript_name=HG003_chrY_T0000198;gene_name=LINC03112;ID=intron:HG003_chrY_T0000198:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=ENST00000850800.1;source_transcript_name=LINC03112-239;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850800.1;transcript_score=299.824;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850800.1,ENST00000850800.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000198;transcript_name=HG003_chrY_T0000198;gene_name=LINC03112;ID=exon:HG003_chrY_T0000198:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2205883	.	-	.	source_transcript=ENST00000850800.1;source_transcript_name=LINC03112-239;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850800.1;transcript_score=299.824;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850800.1,ENST00000850800.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000198;transcript_name=HG003_chrY_T0000198;gene_name=LINC03112;ID=intron:HG003_chrY_T0000198:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205884	2205993	.	-	.	source_transcript=ENST00000850800.1;source_transcript_name=LINC03112-239;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850800.1;transcript_score=299.824;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850800.1,ENST00000850800.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000198;transcript_name=HG003_chrY_T0000198;gene_name=LINC03112;ID=exon:HG003_chrY_T0000198:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2205994	2206141	.	-	.	source_transcript=ENST00000850800.1;source_transcript_name=LINC03112-239;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850800.1;transcript_score=299.824;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850800.1,ENST00000850800.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000198;transcript_name=HG003_chrY_T0000198;gene_name=LINC03112;ID=intron:HG003_chrY_T0000198:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2206142	2206231	.	-	.	source_transcript=ENST00000850800.1;source_transcript_name=LINC03112-239;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850800.1;transcript_score=299.824;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850800.1,ENST00000850800.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000198;transcript_name=HG003_chrY_T0000198;gene_name=LINC03112;ID=exon:HG003_chrY_T0000198:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2206232	2240451	.	-	.	source_transcript=ENST00000850800.1;source_transcript_name=LINC03112-239;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850800.1;transcript_score=299.824;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850800.1,ENST00000850800.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000198;transcript_name=HG003_chrY_T0000198;gene_name=LINC03112;ID=intron:HG003_chrY_T0000198:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240538	.	-	.	source_transcript=ENST00000850800.1;source_transcript_name=LINC03112-239;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850800.1;transcript_score=299.824;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850800.1,ENST00000850800.1;transcript_id=HG003_chrY_T0000198;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000198;transcript_name=HG003_chrY_T0000198;gene_name=LINC03112;ID=exon:HG003_chrY_T0000198:4;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2240530	1000	-	.	source_transcript=ENST00000850801.1;source_transcript_name=LINC03112-240;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850801.1;transcript_score=299.889;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850801.1,ENST00000850801.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000199;gene_name=LINC03112;ID=HG003_chrY_T0000199;Name=LINC03112
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=ENST00000850801.1;source_transcript_name=LINC03112-240;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850801.1;transcript_score=299.889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850801.1,ENST00000850801.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000199;transcript_name=HG003_chrY_T0000199;gene_name=LINC03112;ID=exon:HG003_chrY_T0000199:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850801.1;source_transcript_name=LINC03112-240;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850801.1;transcript_score=299.889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850801.1,ENST00000850801.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000199;transcript_name=HG003_chrY_T0000199;gene_name=LINC03112;ID=intron:HG003_chrY_T0000199:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=ENST00000850801.1;source_transcript_name=LINC03112-240;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850801.1;transcript_score=299.889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850801.1,ENST00000850801.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000199;transcript_name=HG003_chrY_T0000199;gene_name=LINC03112;ID=exon:HG003_chrY_T0000199:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2236341	.	-	.	source_transcript=ENST00000850801.1;source_transcript_name=LINC03112-240;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850801.1;transcript_score=299.889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850801.1,ENST00000850801.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000199;transcript_name=HG003_chrY_T0000199;gene_name=LINC03112;ID=intron:HG003_chrY_T0000199:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2236342	2236647	.	-	.	source_transcript=ENST00000850801.1;source_transcript_name=LINC03112-240;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850801.1;transcript_score=299.889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850801.1,ENST00000850801.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000199;transcript_name=HG003_chrY_T0000199;gene_name=LINC03112;ID=exon:HG003_chrY_T0000199:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2236648	2240451	.	-	.	source_transcript=ENST00000850801.1;source_transcript_name=LINC03112-240;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850801.1;transcript_score=299.889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850801.1,ENST00000850801.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000199;transcript_name=HG003_chrY_T0000199;gene_name=LINC03112;ID=intron:HG003_chrY_T0000199:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240530	.	-	.	source_transcript=ENST00000850801.1;source_transcript_name=LINC03112-240;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850801.1;transcript_score=299.889;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850801.1,ENST00000850801.1;transcript_id=HG003_chrY_T0000199;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000199;transcript_name=HG003_chrY_T0000199;gene_name=LINC03112;ID=exon:HG003_chrY_T0000199:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2240517	1000	-	.	source_transcript=ENST00000850804.1;source_transcript_name=LINC03112-243;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850804.1;transcript_score=299.847;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850804.1,ENST00000850804.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000200;gene_name=LINC03112;ID=HG003_chrY_T0000200;Name=LINC03112
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=ENST00000850804.1;source_transcript_name=LINC03112-243;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850804.1;transcript_score=299.847;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850804.1,ENST00000850804.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000200;transcript_name=HG003_chrY_T0000200;gene_name=LINC03112;ID=exon:HG003_chrY_T0000200:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850804.1;source_transcript_name=LINC03112-243;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850804.1;transcript_score=299.847;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850804.1,ENST00000850804.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000200;transcript_name=HG003_chrY_T0000200;gene_name=LINC03112;ID=intron:HG003_chrY_T0000200:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=ENST00000850804.1;source_transcript_name=LINC03112-243;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850804.1;transcript_score=299.847;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850804.1,ENST00000850804.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000200;transcript_name=HG003_chrY_T0000200;gene_name=LINC03112;ID=exon:HG003_chrY_T0000200:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2205057	.	-	.	source_transcript=ENST00000850804.1;source_transcript_name=LINC03112-243;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850804.1;transcript_score=299.847;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850804.1,ENST00000850804.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000200;transcript_name=HG003_chrY_T0000200;gene_name=LINC03112;ID=intron:HG003_chrY_T0000200:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205058	2205251	.	-	.	source_transcript=ENST00000850804.1;source_transcript_name=LINC03112-243;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850804.1;transcript_score=299.847;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850804.1,ENST00000850804.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000200;transcript_name=HG003_chrY_T0000200;gene_name=LINC03112;ID=exon:HG003_chrY_T0000200:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2205252	2236341	.	-	.	source_transcript=ENST00000850804.1;source_transcript_name=LINC03112-243;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850804.1;transcript_score=299.847;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850804.1,ENST00000850804.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000200;transcript_name=HG003_chrY_T0000200;gene_name=LINC03112;ID=intron:HG003_chrY_T0000200:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2236342	2236623	.	-	.	source_transcript=ENST00000850804.1;source_transcript_name=LINC03112-243;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850804.1;transcript_score=299.847;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850804.1,ENST00000850804.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000200;transcript_name=HG003_chrY_T0000200;gene_name=LINC03112;ID=exon:HG003_chrY_T0000200:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2236624	2240451	.	-	.	source_transcript=ENST00000850804.1;source_transcript_name=LINC03112-243;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850804.1;transcript_score=299.847;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850804.1,ENST00000850804.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000200;transcript_name=HG003_chrY_T0000200;gene_name=LINC03112;ID=intron:HG003_chrY_T0000200:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240517	.	-	.	source_transcript=ENST00000850804.1;source_transcript_name=LINC03112-243;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850804.1;transcript_score=299.847;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850804.1,ENST00000850804.1;transcript_id=HG003_chrY_T0000200;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000200;transcript_name=HG003_chrY_T0000200;gene_name=LINC03112;ID=exon:HG003_chrY_T0000200:4;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2240514	1000	-	.	source_transcript=ENST00000850806.1;source_transcript_name=LINC03112-245;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850806.1;transcript_score=299.93899999999996;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850806.1,ENST00000850806.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000201;gene_name=LINC03112;ID=HG003_chrY_T0000201;Name=LINC03112
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=ENST00000850806.1;source_transcript_name=LINC03112-245;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850806.1;transcript_score=299.93899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850806.1,ENST00000850806.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000201;transcript_name=HG003_chrY_T0000201;gene_name=LINC03112;ID=exon:HG003_chrY_T0000201:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2236341	.	-	.	source_transcript=ENST00000850806.1;source_transcript_name=LINC03112-245;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850806.1;transcript_score=299.93899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850806.1,ENST00000850806.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000201;transcript_name=HG003_chrY_T0000201;gene_name=LINC03112;ID=intron:HG003_chrY_T0000201:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2236342	2236647	.	-	.	source_transcript=ENST00000850806.1;source_transcript_name=LINC03112-245;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850806.1;transcript_score=299.93899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850806.1,ENST00000850806.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000201;transcript_name=HG003_chrY_T0000201;gene_name=LINC03112;ID=exon:HG003_chrY_T0000201:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2236648	2240451	.	-	.	source_transcript=ENST00000850806.1;source_transcript_name=LINC03112-245;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850806.1;transcript_score=299.93899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850806.1,ENST00000850806.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000201;transcript_name=HG003_chrY_T0000201;gene_name=LINC03112;ID=intron:HG003_chrY_T0000201:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240514	.	-	.	source_transcript=ENST00000850806.1;source_transcript_name=LINC03112-245;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850806.1;transcript_score=299.93899999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850806.1,ENST00000850806.1;transcript_id=HG003_chrY_T0000201;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000201;transcript_name=HG003_chrY_T0000201;gene_name=LINC03112;ID=exon:HG003_chrY_T0000201:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2240513	1000	-	.	source_transcript=ENST00000850807.1;source_transcript_name=LINC03112-246;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850807.1;transcript_score=299.801;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850807.1,ENST00000850807.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000202;gene_name=LINC03112;ID=HG003_chrY_T0000202;Name=LINC03112
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=ENST00000850807.1;source_transcript_name=LINC03112-246;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850807.1;transcript_score=299.801;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850807.1,ENST00000850807.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000202;transcript_name=HG003_chrY_T0000202;gene_name=LINC03112;ID=exon:HG003_chrY_T0000202:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850807.1;source_transcript_name=LINC03112-246;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850807.1;transcript_score=299.801;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850807.1,ENST00000850807.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000202;transcript_name=HG003_chrY_T0000202;gene_name=LINC03112;ID=intron:HG003_chrY_T0000202:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201097	.	-	.	source_transcript=ENST00000850807.1;source_transcript_name=LINC03112-246;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850807.1;transcript_score=299.801;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850807.1,ENST00000850807.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000202;transcript_name=HG003_chrY_T0000202;gene_name=LINC03112;ID=exon:HG003_chrY_T0000202:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201098	2205159	.	-	.	source_transcript=ENST00000850807.1;source_transcript_name=LINC03112-246;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850807.1;transcript_score=299.801;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850807.1,ENST00000850807.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000202;transcript_name=HG003_chrY_T0000202;gene_name=LINC03112;ID=intron:HG003_chrY_T0000202:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205160	2205251	.	-	.	source_transcript=ENST00000850807.1;source_transcript_name=LINC03112-246;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850807.1;transcript_score=299.801;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850807.1,ENST00000850807.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000202;transcript_name=HG003_chrY_T0000202;gene_name=LINC03112;ID=exon:HG003_chrY_T0000202:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2205252	2240451	.	-	.	source_transcript=ENST00000850807.1;source_transcript_name=LINC03112-246;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850807.1;transcript_score=299.801;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850807.1,ENST00000850807.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000202;transcript_name=HG003_chrY_T0000202;gene_name=LINC03112;ID=intron:HG003_chrY_T0000202:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240513	.	-	.	source_transcript=ENST00000850807.1;source_transcript_name=LINC03112-246;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850807.1;transcript_score=299.801;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850807.1,ENST00000850807.1;transcript_id=HG003_chrY_T0000202;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000202;transcript_name=HG003_chrY_T0000202;gene_name=LINC03112;ID=exon:HG003_chrY_T0000202:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2240510	1000	-	.	source_transcript=ENST00000850808.1;source_transcript_name=LINC03112-247;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850808.1;transcript_score=299.871;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850808.1,ENST00000850808.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000203;gene_name=LINC03112;ID=HG003_chrY_T0000203;Name=LINC03112
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=ENST00000850808.1;source_transcript_name=LINC03112-247;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850808.1;transcript_score=299.871;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850808.1,ENST00000850808.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000203;transcript_name=HG003_chrY_T0000203;gene_name=LINC03112;ID=exon:HG003_chrY_T0000203:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850808.1;source_transcript_name=LINC03112-247;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850808.1;transcript_score=299.871;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850808.1,ENST00000850808.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000203;transcript_name=HG003_chrY_T0000203;gene_name=LINC03112;ID=intron:HG003_chrY_T0000203:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=ENST00000850808.1;source_transcript_name=LINC03112-247;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850808.1;transcript_score=299.871;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850808.1,ENST00000850808.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000203;transcript_name=HG003_chrY_T0000203;gene_name=LINC03112;ID=exon:HG003_chrY_T0000203:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2212857	.	-	.	source_transcript=ENST00000850808.1;source_transcript_name=LINC03112-247;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850808.1;transcript_score=299.871;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850808.1,ENST00000850808.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000203;transcript_name=HG003_chrY_T0000203;gene_name=LINC03112;ID=intron:HG003_chrY_T0000203:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2212858	2212934	.	-	.	source_transcript=ENST00000850808.1;source_transcript_name=LINC03112-247;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850808.1;transcript_score=299.871;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850808.1,ENST00000850808.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000203;transcript_name=HG003_chrY_T0000203;gene_name=LINC03112;ID=exon:HG003_chrY_T0000203:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2212935	2240451	.	-	.	source_transcript=ENST00000850808.1;source_transcript_name=LINC03112-247;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850808.1;transcript_score=299.871;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850808.1,ENST00000850808.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000203;transcript_name=HG003_chrY_T0000203;gene_name=LINC03112;ID=intron:HG003_chrY_T0000203:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240510	.	-	.	source_transcript=ENST00000850808.1;source_transcript_name=LINC03112-247;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850808.1;transcript_score=299.871;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850808.1,ENST00000850808.1;transcript_id=HG003_chrY_T0000203;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000203;transcript_name=HG003_chrY_T0000203;gene_name=LINC03112;ID=exon:HG003_chrY_T0000203:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2240507	1000	-	.	source_transcript=ENST00000850810.1;source_transcript_name=LINC03112-249;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850810.1;transcript_score=299.569;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850810.1,ENST00000850810.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000204;gene_name=LINC03112;ID=HG003_chrY_T0000204;Name=LINC03112
HG003_chrY	CAT	exon	2197029	2197148	.	-	.	source_transcript=ENST00000850810.1;source_transcript_name=LINC03112-249;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850810.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850810.1,ENST00000850810.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000204;transcript_name=HG003_chrY_T0000204;gene_name=LINC03112;ID=exon:HG003_chrY_T0000204:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2197149	2198084	.	-	.	source_transcript=ENST00000850810.1;source_transcript_name=LINC03112-249;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850810.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850810.1,ENST00000850810.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000204;transcript_name=HG003_chrY_T0000204;gene_name=LINC03112;ID=intron:HG003_chrY_T0000204:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2198085	2198292	.	-	.	source_transcript=ENST00000850810.1;source_transcript_name=LINC03112-249;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850810.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850810.1,ENST00000850810.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000204;transcript_name=HG003_chrY_T0000204;gene_name=LINC03112;ID=exon:HG003_chrY_T0000204:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2240371	.	-	.	source_transcript=ENST00000850810.1;source_transcript_name=LINC03112-249;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850810.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850810.1,ENST00000850810.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000204;transcript_name=HG003_chrY_T0000204;gene_name=LINC03112;ID=intron:HG003_chrY_T0000204:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240372	2240507	.	-	.	source_transcript=ENST00000850810.1;source_transcript_name=LINC03112-249;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850810.1;transcript_score=299.569;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850810.1,ENST00000850810.1;transcript_id=HG003_chrY_T0000204;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000204;transcript_name=HG003_chrY_T0000204;gene_name=LINC03112;ID=exon:HG003_chrY_T0000204:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2240502	1000	-	.	source_transcript=ENST00000850811.1;source_transcript_name=LINC03112-250;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850811.1;transcript_score=299.837;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850811.1,ENST00000850811.1;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000205;gene_name=LINC03112;ID=HG003_chrY_T0000205;Name=LINC03112
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=ENST00000850811.1;source_transcript_name=LINC03112-250;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850811.1;transcript_score=299.837;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850811.1,ENST00000850811.1;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000205;transcript_name=HG003_chrY_T0000205;gene_name=LINC03112;ID=exon:HG003_chrY_T0000205:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850811.1;source_transcript_name=LINC03112-250;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850811.1;transcript_score=299.837;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850811.1,ENST00000850811.1;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000205;transcript_name=HG003_chrY_T0000205;gene_name=LINC03112;ID=intron:HG003_chrY_T0000205:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=ENST00000850811.1;source_transcript_name=LINC03112-250;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850811.1;transcript_score=299.837;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850811.1,ENST00000850811.1;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000205;transcript_name=HG003_chrY_T0000205;gene_name=LINC03112;ID=exon:HG003_chrY_T0000205:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2205159	.	-	.	source_transcript=ENST00000850811.1;source_transcript_name=LINC03112-250;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850811.1;transcript_score=299.837;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850811.1,ENST00000850811.1;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000205;transcript_name=HG003_chrY_T0000205;gene_name=LINC03112;ID=intron:HG003_chrY_T0000205:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2205160	2205251	.	-	.	source_transcript=ENST00000850811.1;source_transcript_name=LINC03112-250;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850811.1;transcript_score=299.837;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850811.1,ENST00000850811.1;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000205;transcript_name=HG003_chrY_T0000205;gene_name=LINC03112;ID=exon:HG003_chrY_T0000205:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2205252	2236341	.	-	.	source_transcript=ENST00000850811.1;source_transcript_name=LINC03112-250;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850811.1;transcript_score=299.837;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850811.1,ENST00000850811.1;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000205;transcript_name=HG003_chrY_T0000205;gene_name=LINC03112;ID=intron:HG003_chrY_T0000205:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2236342	2236623	.	-	.	source_transcript=ENST00000850811.1;source_transcript_name=LINC03112-250;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850811.1;transcript_score=299.837;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850811.1,ENST00000850811.1;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000205;transcript_name=HG003_chrY_T0000205;gene_name=LINC03112;ID=exon:HG003_chrY_T0000205:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2236624	2240451	.	-	.	source_transcript=ENST00000850811.1;source_transcript_name=LINC03112-250;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850811.1;transcript_score=299.837;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850811.1,ENST00000850811.1;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000205;transcript_name=HG003_chrY_T0000205;gene_name=LINC03112;ID=intron:HG003_chrY_T0000205:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240502	.	-	.	source_transcript=ENST00000850811.1;source_transcript_name=LINC03112-250;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850811.1;transcript_score=299.837;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850811.1,ENST00000850811.1;transcript_id=HG003_chrY_T0000205;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000205;transcript_name=HG003_chrY_T0000205;gene_name=LINC03112;ID=exon:HG003_chrY_T0000205:4;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2215218	1000	-	.	source_transcript=ENST00000850813.1;source_transcript_name=LINC03112-252;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850813.1;transcript_score=299.86199999999997;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850813.1,ENST00000850813.1;transcript_id=HG003_chrY_T0000206;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000206;gene_name=LINC03112;ID=HG003_chrY_T0000206;Name=LINC03112
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=ENST00000850813.1;source_transcript_name=LINC03112-252;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850813.1;transcript_score=299.86199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850813.1,ENST00000850813.1;transcript_id=HG003_chrY_T0000206;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000206;transcript_name=HG003_chrY_T0000206;gene_name=LINC03112;ID=exon:HG003_chrY_T0000206:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850813.1;source_transcript_name=LINC03112-252;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850813.1;transcript_score=299.86199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850813.1,ENST00000850813.1;transcript_id=HG003_chrY_T0000206;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000206;transcript_name=HG003_chrY_T0000206;gene_name=LINC03112;ID=intron:HG003_chrY_T0000206:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201165	.	-	.	source_transcript=ENST00000850813.1;source_transcript_name=LINC03112-252;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850813.1;transcript_score=299.86199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850813.1,ENST00000850813.1;transcript_id=HG003_chrY_T0000206;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000206;transcript_name=HG003_chrY_T0000206;gene_name=LINC03112;ID=exon:HG003_chrY_T0000206:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201166	2215189	.	-	.	source_transcript=ENST00000850813.1;source_transcript_name=LINC03112-252;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850813.1;transcript_score=299.86199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850813.1,ENST00000850813.1;transcript_id=HG003_chrY_T0000206;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000206;transcript_name=HG003_chrY_T0000206;gene_name=LINC03112;ID=intron:HG003_chrY_T0000206:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2215190	2215218	.	-	.	source_transcript=ENST00000850813.1;source_transcript_name=LINC03112-252;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850813.1;transcript_score=299.86199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850813.1,ENST00000850813.1;transcript_id=HG003_chrY_T0000206;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000206;transcript_name=HG003_chrY_T0000206;gene_name=LINC03112;ID=exon:HG003_chrY_T0000206:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197029	2214950	1000	-	.	source_transcript=ENST00000850814.1;source_transcript_name=LINC03112-253;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850814.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850814.1;transcript_score=299.929;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850814.1,ENST00000850814.1;transcript_id=HG003_chrY_T0000207;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000207;gene_name=LINC03112;ID=HG003_chrY_T0000207;Name=LINC03112
HG003_chrY	CAT	exon	2197029	2198292	.	-	.	source_transcript=ENST00000850814.1;source_transcript_name=LINC03112-253;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850814.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850814.1;transcript_score=299.929;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850814.1,ENST00000850814.1;transcript_id=HG003_chrY_T0000207;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000207;transcript_name=HG003_chrY_T0000207;gene_name=LINC03112;ID=exon:HG003_chrY_T0000207:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2214797	.	-	.	source_transcript=ENST00000850814.1;source_transcript_name=LINC03112-253;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850814.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850814.1;transcript_score=299.929;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850814.1,ENST00000850814.1;transcript_id=HG003_chrY_T0000207;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000207;transcript_name=HG003_chrY_T0000207;gene_name=LINC03112;ID=intron:HG003_chrY_T0000207:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2214798	2214950	.	-	.	source_transcript=ENST00000850814.1;source_transcript_name=LINC03112-253;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850814.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850814.1;transcript_score=299.929;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850814.1,ENST00000850814.1;transcript_id=HG003_chrY_T0000207;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000207;transcript_name=HG003_chrY_T0000207;gene_name=LINC03112;ID=exon:HG003_chrY_T0000207:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197032	2240529	1000	-	.	source_transcript=ENST00000850803.1;source_transcript_name=LINC03112-242;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850803.1;transcript_score=299.883;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850803.1,ENST00000850803.1;transcript_id=HG003_chrY_T0000208;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000208;gene_name=LINC03112;ID=HG003_chrY_T0000208;Name=LINC03112
HG003_chrY	CAT	exon	2197032	2198292	.	-	.	source_transcript=ENST00000850803.1;source_transcript_name=LINC03112-242;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850803.1;transcript_score=299.883;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850803.1,ENST00000850803.1;transcript_id=HG003_chrY_T0000208;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000208;transcript_name=HG003_chrY_T0000208;gene_name=LINC03112;ID=exon:HG003_chrY_T0000208:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2201009	.	-	.	source_transcript=ENST00000850803.1;source_transcript_name=LINC03112-242;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850803.1;transcript_score=299.883;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850803.1,ENST00000850803.1;transcript_id=HG003_chrY_T0000208;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000208;transcript_name=HG003_chrY_T0000208;gene_name=LINC03112;ID=intron:HG003_chrY_T0000208:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2201010	2201097	.	-	.	source_transcript=ENST00000850803.1;source_transcript_name=LINC03112-242;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850803.1;transcript_score=299.883;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850803.1,ENST00000850803.1;transcript_id=HG003_chrY_T0000208;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000208;transcript_name=HG003_chrY_T0000208;gene_name=LINC03112;ID=exon:HG003_chrY_T0000208:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2201098	2236341	.	-	.	source_transcript=ENST00000850803.1;source_transcript_name=LINC03112-242;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850803.1;transcript_score=299.883;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850803.1,ENST00000850803.1;transcript_id=HG003_chrY_T0000208;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000208;transcript_name=HG003_chrY_T0000208;gene_name=LINC03112;ID=intron:HG003_chrY_T0000208:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2236342	2236623	.	-	.	source_transcript=ENST00000850803.1;source_transcript_name=LINC03112-242;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850803.1;transcript_score=299.883;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850803.1,ENST00000850803.1;transcript_id=HG003_chrY_T0000208;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000208;transcript_name=HG003_chrY_T0000208;gene_name=LINC03112;ID=exon:HG003_chrY_T0000208:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2236624	2240451	.	-	.	source_transcript=ENST00000850803.1;source_transcript_name=LINC03112-242;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850803.1;transcript_score=299.883;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850803.1,ENST00000850803.1;transcript_id=HG003_chrY_T0000208;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000208;transcript_name=HG003_chrY_T0000208;gene_name=LINC03112;ID=intron:HG003_chrY_T0000208:2;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240529	.	-	.	source_transcript=ENST00000850803.1;source_transcript_name=LINC03112-242;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850803.1;transcript_score=299.883;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850803.1,ENST00000850803.1;transcript_id=HG003_chrY_T0000208;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000208;transcript_name=HG003_chrY_T0000208;gene_name=LINC03112;ID=exon:HG003_chrY_T0000208:3;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2197032	2213051	1000	-	.	source_transcript=ENST00000850815.1;source_transcript_name=LINC03112-254;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850815.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850815.1;transcript_score=299.931;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850815.1,ENST00000850815.1;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000209;gene_name=LINC03112;ID=HG003_chrY_T0000209;Name=LINC03112
HG003_chrY	CAT	exon	2197032	2198292	.	-	.	source_transcript=ENST00000850815.1;source_transcript_name=LINC03112-254;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850815.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850815.1;transcript_score=299.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850815.1,ENST00000850815.1;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000209;transcript_name=HG003_chrY_T0000209;gene_name=LINC03112;ID=exon:HG003_chrY_T0000209:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2198293	2212857	.	-	.	source_transcript=ENST00000850815.1;source_transcript_name=LINC03112-254;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850815.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850815.1;transcript_score=299.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850815.1,ENST00000850815.1;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000209;transcript_name=HG003_chrY_T0000209;gene_name=LINC03112;ID=intron:HG003_chrY_T0000209:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2212858	2213051	.	-	.	source_transcript=ENST00000850815.1;source_transcript_name=LINC03112-254;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850815.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850815.1;transcript_score=299.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850815.1,ENST00000850815.1;transcript_id=HG003_chrY_T0000209;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000209;transcript_name=HG003_chrY_T0000209;gene_name=LINC03112;ID=exon:HG003_chrY_T0000209:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2236256	2240518	1000	-	.	source_transcript=ENST00000850816.1;source_transcript_name=LINC03112-255;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850816.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850816.1,ENST00000850816.1;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000214;gene_name=LINC03112;ID=HG003_chrY_T0000214;Name=LINC03112
HG003_chrY	CAT	exon	2236256	2236623	.	-	.	source_transcript=ENST00000850816.1;source_transcript_name=LINC03112-255;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850816.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850816.1,ENST00000850816.1;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000214;transcript_name=HG003_chrY_T0000214;gene_name=LINC03112;ID=exon:HG003_chrY_T0000214:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2236624	2240451	.	-	.	source_transcript=ENST00000850816.1;source_transcript_name=LINC03112-255;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850816.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850816.1,ENST00000850816.1;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000214;transcript_name=HG003_chrY_T0000214;gene_name=LINC03112;ID=intron:HG003_chrY_T0000214:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2240452	2240518	.	-	.	source_transcript=ENST00000850816.1;source_transcript_name=LINC03112-255;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850816.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850816.1,ENST00000850816.1;transcript_id=HG003_chrY_T0000214;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000214;transcript_name=HG003_chrY_T0000214;gene_name=LINC03112;ID=exon:HG003_chrY_T0000214:1;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2239797	2240529	1000	-	.	source_transcript=ENST00000850817.1;source_transcript_name=LINC03112-256;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850817.1;transcript_score=199.727;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850817.1,ENST00000850817.1;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_G0000045;transcript_name=HG003_chrY_T0000216;gene_name=LINC03112;ID=HG003_chrY_T0000216;Name=LINC03112
HG003_chrY	CAT	exon	2239797	2240529	.	-	.	source_transcript=ENST00000850817.1;source_transcript_name=LINC03112-256;source_gene=ENSG00000292360.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292360.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850817.1;transcript_score=199.727;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC03112;alternative_source_transcripts=ENST00000850817.1,ENST00000850817.1;transcript_id=HG003_chrY_T0000216;gene_id=HG003_chrY_G0000045;Parent=HG003_chrY_T0000216;transcript_name=HG003_chrY_T0000216;gene_name=LINC03112;ID=exon:HG003_chrY_T0000216:0;Name=LINC03112;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2215010	2237373	.	+	.	source_gene_common_name=ENSG00000310557;source_gene=ENSG00000310557.1;alternative_source_transcripts=ENST00000850818.1,ENST00000850818.1;gene_id=HG003_chrY_G0000046;gene_biotype=lncRNA;gene_name=ENSG00000310557;gene_sources=liftoff;ID=HG003_chrY_G0000046;Name=ENSG00000310557
HG003_chrY	CAT	transcript	2215010	2237373	1000	+	.	source_transcript=ENST00000850818.1;source_transcript_name=ENST00000850818;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850818.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850818.1,ENST00000850818.1;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_G0000046;transcript_name=HG003_chrY_T0000210;gene_name=ENSG00000310557;ID=HG003_chrY_T0000210;Name=ENSG00000310557
HG003_chrY	CAT	exon	2215010	2215201	.	+	.	source_transcript=ENST00000850818.1;source_transcript_name=ENST00000850818;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850818.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850818.1,ENST00000850818.1;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000210;transcript_name=HG003_chrY_T0000210;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000210:0;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2215202	2224683	.	+	.	source_transcript=ENST00000850818.1;source_transcript_name=ENST00000850818;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850818.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850818.1,ENST00000850818.1;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000210;transcript_name=HG003_chrY_T0000210;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000210:0;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2224684	2224758	.	+	.	source_transcript=ENST00000850818.1;source_transcript_name=ENST00000850818;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850818.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850818.1,ENST00000850818.1;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000210;transcript_name=HG003_chrY_T0000210;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000210:1;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2224759	2228236	.	+	.	source_transcript=ENST00000850818.1;source_transcript_name=ENST00000850818;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850818.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850818.1,ENST00000850818.1;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000210;transcript_name=HG003_chrY_T0000210;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000210:1;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2228237	2228399	.	+	.	source_transcript=ENST00000850818.1;source_transcript_name=ENST00000850818;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850818.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850818.1,ENST00000850818.1;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000210;transcript_name=HG003_chrY_T0000210;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000210:2;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2228400	2237165	.	+	.	source_transcript=ENST00000850818.1;source_transcript_name=ENST00000850818;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850818.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850818.1,ENST00000850818.1;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000210;transcript_name=HG003_chrY_T0000210;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000210:2;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2237166	2237373	.	+	.	source_transcript=ENST00000850818.1;source_transcript_name=ENST00000850818;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850818.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850818.1,ENST00000850818.1;transcript_id=HG003_chrY_T0000210;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000210;transcript_name=HG003_chrY_T0000210;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000210:3;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2215011	2234598	1000	+	.	source_transcript=ENST00000850820.1;source_transcript_name=ENST00000850820;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850820.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850820.1,ENST00000850820.1;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_G0000046;transcript_name=HG003_chrY_T0000211;gene_name=ENSG00000310557;ID=HG003_chrY_T0000211;Name=ENSG00000310557
HG003_chrY	CAT	exon	2215011	2215201	.	+	.	source_transcript=ENST00000850820.1;source_transcript_name=ENST00000850820;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850820.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850820.1,ENST00000850820.1;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000211;transcript_name=HG003_chrY_T0000211;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000211:0;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2215202	2224683	.	+	.	source_transcript=ENST00000850820.1;source_transcript_name=ENST00000850820;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850820.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850820.1,ENST00000850820.1;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000211;transcript_name=HG003_chrY_T0000211;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000211:0;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2224684	2224758	.	+	.	source_transcript=ENST00000850820.1;source_transcript_name=ENST00000850820;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850820.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850820.1,ENST00000850820.1;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000211;transcript_name=HG003_chrY_T0000211;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000211:1;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2224759	2228236	.	+	.	source_transcript=ENST00000850820.1;source_transcript_name=ENST00000850820;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850820.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850820.1,ENST00000850820.1;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000211;transcript_name=HG003_chrY_T0000211;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000211:1;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2228237	2228399	.	+	.	source_transcript=ENST00000850820.1;source_transcript_name=ENST00000850820;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850820.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850820.1,ENST00000850820.1;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000211;transcript_name=HG003_chrY_T0000211;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000211:2;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2228400	2234259	.	+	.	source_transcript=ENST00000850820.1;source_transcript_name=ENST00000850820;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850820.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850820.1,ENST00000850820.1;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000211;transcript_name=HG003_chrY_T0000211;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000211:2;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2234260	2234598	.	+	.	source_transcript=ENST00000850820.1;source_transcript_name=ENST00000850820;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850820.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850820.1,ENST00000850820.1;transcript_id=HG003_chrY_T0000211;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000211;transcript_name=HG003_chrY_T0000211;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000211:3;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2215013	2237372	1000	+	.	source_transcript=ENST00000850819.1;source_transcript_name=ENST00000850819;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850819.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850819.1,ENST00000850819.1;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_G0000046;transcript_name=HG003_chrY_T0000212;gene_name=ENSG00000310557;ID=HG003_chrY_T0000212;Name=ENSG00000310557
HG003_chrY	CAT	exon	2215013	2215201	.	+	.	source_transcript=ENST00000850819.1;source_transcript_name=ENST00000850819;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850819.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850819.1,ENST00000850819.1;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000212;transcript_name=HG003_chrY_T0000212;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000212:0;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2215202	2224208	.	+	.	source_transcript=ENST00000850819.1;source_transcript_name=ENST00000850819;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850819.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850819.1,ENST00000850819.1;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000212;transcript_name=HG003_chrY_T0000212;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000212:0;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2224209	2224335	.	+	.	source_transcript=ENST00000850819.1;source_transcript_name=ENST00000850819;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850819.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850819.1,ENST00000850819.1;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000212;transcript_name=HG003_chrY_T0000212;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000212:1;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2224336	2224635	.	+	.	source_transcript=ENST00000850819.1;source_transcript_name=ENST00000850819;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850819.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850819.1,ENST00000850819.1;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000212;transcript_name=HG003_chrY_T0000212;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000212:1;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2224636	2224758	.	+	.	source_transcript=ENST00000850819.1;source_transcript_name=ENST00000850819;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850819.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850819.1,ENST00000850819.1;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000212;transcript_name=HG003_chrY_T0000212;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000212:2;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2224759	2228236	.	+	.	source_transcript=ENST00000850819.1;source_transcript_name=ENST00000850819;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850819.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850819.1,ENST00000850819.1;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000212;transcript_name=HG003_chrY_T0000212;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000212:2;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2228237	2228399	.	+	.	source_transcript=ENST00000850819.1;source_transcript_name=ENST00000850819;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850819.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850819.1,ENST00000850819.1;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000212;transcript_name=HG003_chrY_T0000212;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000212:3;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2228400	2237165	.	+	.	source_transcript=ENST00000850819.1;source_transcript_name=ENST00000850819;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850819.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850819.1,ENST00000850819.1;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000212;transcript_name=HG003_chrY_T0000212;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000212:3;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2237166	2237372	.	+	.	source_transcript=ENST00000850819.1;source_transcript_name=ENST00000850819;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850819.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850819.1,ENST00000850819.1;transcript_id=HG003_chrY_T0000212;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000212;transcript_name=HG003_chrY_T0000212;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000212:4;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2215099	2234580	1000	+	.	source_transcript=ENST00000850821.1;source_transcript_name=ENST00000850821;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850821.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850821.1,ENST00000850821.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_G0000046;transcript_name=HG003_chrY_T0000213;gene_name=ENSG00000310557;ID=HG003_chrY_T0000213;Name=ENSG00000310557
HG003_chrY	CAT	exon	2215099	2215201	.	+	.	source_transcript=ENST00000850821.1;source_transcript_name=ENST00000850821;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850821.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850821.1,ENST00000850821.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000213;transcript_name=HG003_chrY_T0000213;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000213:0;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2215202	2224208	.	+	.	source_transcript=ENST00000850821.1;source_transcript_name=ENST00000850821;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850821.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850821.1,ENST00000850821.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000213;transcript_name=HG003_chrY_T0000213;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000213:0;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2224209	2224335	.	+	.	source_transcript=ENST00000850821.1;source_transcript_name=ENST00000850821;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850821.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850821.1,ENST00000850821.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000213;transcript_name=HG003_chrY_T0000213;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000213:1;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2224336	2224683	.	+	.	source_transcript=ENST00000850821.1;source_transcript_name=ENST00000850821;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850821.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850821.1,ENST00000850821.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000213;transcript_name=HG003_chrY_T0000213;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000213:1;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2224684	2224758	.	+	.	source_transcript=ENST00000850821.1;source_transcript_name=ENST00000850821;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850821.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850821.1,ENST00000850821.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000213;transcript_name=HG003_chrY_T0000213;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000213:2;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2224759	2228236	.	+	.	source_transcript=ENST00000850821.1;source_transcript_name=ENST00000850821;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850821.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850821.1,ENST00000850821.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000213;transcript_name=HG003_chrY_T0000213;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000213:2;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2228237	2228399	.	+	.	source_transcript=ENST00000850821.1;source_transcript_name=ENST00000850821;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850821.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850821.1,ENST00000850821.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000213;transcript_name=HG003_chrY_T0000213;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000213:3;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2228400	2234259	.	+	.	source_transcript=ENST00000850821.1;source_transcript_name=ENST00000850821;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850821.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850821.1,ENST00000850821.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000213;transcript_name=HG003_chrY_T0000213;gene_name=ENSG00000310557;ID=intron:HG003_chrY_T0000213:3;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2234260	2234580	.	+	.	source_transcript=ENST00000850821.1;source_transcript_name=ENST00000850821;source_gene=ENSG00000310557.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310557.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850821.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310557;alternative_source_transcripts=ENST00000850821.1,ENST00000850821.1;transcript_id=HG003_chrY_T0000213;gene_id=HG003_chrY_G0000046;Parent=HG003_chrY_T0000213;transcript_name=HG003_chrY_T0000213;gene_name=ENSG00000310557;ID=exon:HG003_chrY_T0000213:4;Name=ENSG00000310557;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2239752	2298007	.	+	.	source_gene_common_name=CD99P1;source_gene=ENSG00000292362.2;gene_id=HG003_chrY_G0000047;gene_biotype=lncRNA;gene_name=CD99P1;gene_sources=liftoff;ID=HG003_chrY_G0000047;Name=CD99P1
HG003_chrY	CAT	transcript	2239752	2269925	1000	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=HG003_chrY_T0000215;Name=CD99P1
HG003_chrY	CAT	exon	2239752	2239821	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=exon:HG003_chrY_T0000215:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2239822	2242315	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=intron:HG003_chrY_T0000215:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=exon:HG003_chrY_T0000215:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=intron:HG003_chrY_T0000215:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=exon:HG003_chrY_T0000215:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=intron:HG003_chrY_T0000215:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=exon:HG003_chrY_T0000215:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=intron:HG003_chrY_T0000215:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=exon:HG003_chrY_T0000215:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=intron:HG003_chrY_T0000215:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=exon:HG003_chrY_T0000215:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=intron:HG003_chrY_T0000215:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=exon:HG003_chrY_T0000215:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=intron:HG003_chrY_T0000215:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=exon:HG003_chrY_T0000215:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=intron:HG003_chrY_T0000215:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269925	.	+	.	source_transcript=ENST00000850759.1;source_transcript_name=CD99P1-271;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850759.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850759.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000215;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000215;transcript_name=HG003_chrY_T0000215;gene_name=CD99P1;ID=exon:HG003_chrY_T0000215:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240192	2269931	1000	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=HG003_chrY_T0000217;Name=CD99P1
HG003_chrY	CAT	exon	2240192	2240314	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=exon:HG003_chrY_T0000217:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240315	2242315	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=intron:HG003_chrY_T0000217:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=exon:HG003_chrY_T0000217:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=intron:HG003_chrY_T0000217:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=exon:HG003_chrY_T0000217:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=intron:HG003_chrY_T0000217:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=exon:HG003_chrY_T0000217:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=intron:HG003_chrY_T0000217:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=exon:HG003_chrY_T0000217:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=intron:HG003_chrY_T0000217:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=exon:HG003_chrY_T0000217:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=intron:HG003_chrY_T0000217:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=exon:HG003_chrY_T0000217:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=intron:HG003_chrY_T0000217:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=exon:HG003_chrY_T0000217:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=intron:HG003_chrY_T0000217:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269931	.	+	.	source_transcript=ENST00000850760.1;source_transcript_name=CD99P1-272;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850760.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850760.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000217;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000217;transcript_name=HG003_chrY_T0000217;gene_name=CD99P1;ID=exon:HG003_chrY_T0000217:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240220	2269933	1000	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=HG003_chrY_T0000218;Name=CD99P1
HG003_chrY	CAT	exon	2240220	2240314	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=exon:HG003_chrY_T0000218:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240315	2242315	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=intron:HG003_chrY_T0000218:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=exon:HG003_chrY_T0000218:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=intron:HG003_chrY_T0000218:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=exon:HG003_chrY_T0000218:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=intron:HG003_chrY_T0000218:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=exon:HG003_chrY_T0000218:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=intron:HG003_chrY_T0000218:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=exon:HG003_chrY_T0000218:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=intron:HG003_chrY_T0000218:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=exon:HG003_chrY_T0000218:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=intron:HG003_chrY_T0000218:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=exon:HG003_chrY_T0000218:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=intron:HG003_chrY_T0000218:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=exon:HG003_chrY_T0000218:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=intron:HG003_chrY_T0000218:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=exon:HG003_chrY_T0000218:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=intron:HG003_chrY_T0000218:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269933	.	+	.	source_transcript=ENST00000850761.1;source_transcript_name=CD99P1-273;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850761.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000218;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000218;transcript_name=HG003_chrY_T0000218;gene_name=CD99P1;ID=exon:HG003_chrY_T0000218:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240275	2254119	1000	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=HG003_chrY_T0000219;Name=CD99P1
HG003_chrY	CAT	exon	2240275	2240314	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=exon:HG003_chrY_T0000219:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240315	2242315	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=intron:HG003_chrY_T0000219:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=exon:HG003_chrY_T0000219:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=intron:HG003_chrY_T0000219:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=exon:HG003_chrY_T0000219:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=intron:HG003_chrY_T0000219:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=exon:HG003_chrY_T0000219:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=intron:HG003_chrY_T0000219:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=exon:HG003_chrY_T0000219:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=intron:HG003_chrY_T0000219:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=exon:HG003_chrY_T0000219:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=intron:HG003_chrY_T0000219:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254119	.	+	.	source_transcript=ENST00000850792.1;source_transcript_name=CD99P1-304;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000219;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000219;transcript_name=HG003_chrY_T0000219;gene_name=CD99P1;ID=exon:HG003_chrY_T0000219:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240677	2269933	1000	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=HG003_chrY_T0000221;Name=CD99P1
HG003_chrY	CAT	exon	2240677	2240815	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=exon:HG003_chrY_T0000221:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=intron:HG003_chrY_T0000221:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=exon:HG003_chrY_T0000221:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=intron:HG003_chrY_T0000221:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=exon:HG003_chrY_T0000221:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2250049	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=intron:HG003_chrY_T0000221:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=exon:HG003_chrY_T0000221:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=intron:HG003_chrY_T0000221:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=exon:HG003_chrY_T0000221:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=intron:HG003_chrY_T0000221:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=exon:HG003_chrY_T0000221:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=intron:HG003_chrY_T0000221:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=exon:HG003_chrY_T0000221:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=intron:HG003_chrY_T0000221:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269933	.	+	.	source_transcript=ENST00000850764.1;source_transcript_name=CD99P1-276;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850764.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000221;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000221;transcript_name=HG003_chrY_T0000221;gene_name=CD99P1;ID=exon:HG003_chrY_T0000221:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240686	2269927	1000	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=HG003_chrY_T0000222;Name=CD99P1
HG003_chrY	CAT	exon	2240686	2240815	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=exon:HG003_chrY_T0000222:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=intron:HG003_chrY_T0000222:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=exon:HG003_chrY_T0000222:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=intron:HG003_chrY_T0000222:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=exon:HG003_chrY_T0000222:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=intron:HG003_chrY_T0000222:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=exon:HG003_chrY_T0000222:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=intron:HG003_chrY_T0000222:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=exon:HG003_chrY_T0000222:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=intron:HG003_chrY_T0000222:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=exon:HG003_chrY_T0000222:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=intron:HG003_chrY_T0000222:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254765	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=exon:HG003_chrY_T0000222:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=intron:HG003_chrY_T0000222:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=exon:HG003_chrY_T0000222:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=intron:HG003_chrY_T0000222:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000711245.1;source_transcript_name=CD99P1-258;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000222;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000222;transcript_name=HG003_chrY_T0000222;gene_name=CD99P1;ID=exon:HG003_chrY_T0000222:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240688	2269934	1000	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=HG003_chrY_T0000223;Name=CD99P1
HG003_chrY	CAT	exon	2240688	2240815	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=exon:HG003_chrY_T0000223:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=intron:HG003_chrY_T0000223:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=exon:HG003_chrY_T0000223:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=intron:HG003_chrY_T0000223:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=exon:HG003_chrY_T0000223:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=intron:HG003_chrY_T0000223:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=exon:HG003_chrY_T0000223:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=intron:HG003_chrY_T0000223:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=exon:HG003_chrY_T0000223:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=intron:HG003_chrY_T0000223:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=exon:HG003_chrY_T0000223:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=intron:HG003_chrY_T0000223:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=exon:HG003_chrY_T0000223:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=intron:HG003_chrY_T0000223:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=exon:HG003_chrY_T0000223:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=intron:HG003_chrY_T0000223:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=exon:HG003_chrY_T0000223:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=intron:HG003_chrY_T0000223:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269934	.	+	.	source_transcript=ENST00000850828.1;source_transcript_name=CD99P1-308;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850828.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000223;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000223;transcript_name=HG003_chrY_T0000223;gene_name=CD99P1;ID=exon:HG003_chrY_T0000223:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240694	2269927	1000	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=HG003_chrY_T0000224;Name=CD99P1
HG003_chrY	CAT	exon	2240694	2240815	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=exon:HG003_chrY_T0000224:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=intron:HG003_chrY_T0000224:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=exon:HG003_chrY_T0000224:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=intron:HG003_chrY_T0000224:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=exon:HG003_chrY_T0000224:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=intron:HG003_chrY_T0000224:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=exon:HG003_chrY_T0000224:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=intron:HG003_chrY_T0000224:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=exon:HG003_chrY_T0000224:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=intron:HG003_chrY_T0000224:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=exon:HG003_chrY_T0000224:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=intron:HG003_chrY_T0000224:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=exon:HG003_chrY_T0000224:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=intron:HG003_chrY_T0000224:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=exon:HG003_chrY_T0000224:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2269571	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=intron:HG003_chrY_T0000224:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850766.1;source_transcript_name=CD99P1-278;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850766.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850766.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000224;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000224;transcript_name=HG003_chrY_T0000224;gene_name=CD99P1;ID=exon:HG003_chrY_T0000224:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240694	2290671	1000	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=HG003_chrY_T0000225;Name=CD99P1
HG003_chrY	CAT	exon	2240694	2240815	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=exon:HG003_chrY_T0000225:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=intron:HG003_chrY_T0000225:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=exon:HG003_chrY_T0000225:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=intron:HG003_chrY_T0000225:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=exon:HG003_chrY_T0000225:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=intron:HG003_chrY_T0000225:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=exon:HG003_chrY_T0000225:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=intron:HG003_chrY_T0000225:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=exon:HG003_chrY_T0000225:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=intron:HG003_chrY_T0000225:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=exon:HG003_chrY_T0000225:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=intron:HG003_chrY_T0000225:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=exon:HG003_chrY_T0000225:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=intron:HG003_chrY_T0000225:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=exon:HG003_chrY_T0000225:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2290113	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=intron:HG003_chrY_T0000225:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2290114	2290671	.	+	.	source_transcript=ENST00000850752.1;source_transcript_name=CD99P1-264;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850752.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850752.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000225;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000225;transcript_name=HG003_chrY_T0000225;gene_name=CD99P1;ID=exon:HG003_chrY_T0000225:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240694	2248815	1000	+	.	source_transcript=ENST00000850829.1;source_transcript_name=CD99P1-309;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850829.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850829.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000226;gene_name=CD99P1;ID=HG003_chrY_T0000226;Name=CD99P1
HG003_chrY	CAT	exon	2240694	2240815	.	+	.	source_transcript=ENST00000850829.1;source_transcript_name=CD99P1-309;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850829.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850829.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000226;transcript_name=HG003_chrY_T0000226;gene_name=CD99P1;ID=exon:HG003_chrY_T0000226:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850829.1;source_transcript_name=CD99P1-309;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850829.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850829.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000226;transcript_name=HG003_chrY_T0000226;gene_name=CD99P1;ID=intron:HG003_chrY_T0000226:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850829.1;source_transcript_name=CD99P1-309;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850829.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850829.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000226;transcript_name=HG003_chrY_T0000226;gene_name=CD99P1;ID=exon:HG003_chrY_T0000226:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850829.1;source_transcript_name=CD99P1-309;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850829.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850829.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000226;transcript_name=HG003_chrY_T0000226;gene_name=CD99P1;ID=intron:HG003_chrY_T0000226:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850829.1;source_transcript_name=CD99P1-309;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850829.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850829.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000226;transcript_name=HG003_chrY_T0000226;gene_name=CD99P1;ID=exon:HG003_chrY_T0000226:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850829.1;source_transcript_name=CD99P1-309;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850829.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850829.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000226;transcript_name=HG003_chrY_T0000226;gene_name=CD99P1;ID=intron:HG003_chrY_T0000226:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2248815	.	+	.	source_transcript=ENST00000850829.1;source_transcript_name=CD99P1-309;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850829.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850829.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000226;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000226;transcript_name=HG003_chrY_T0000226;gene_name=CD99P1;ID=exon:HG003_chrY_T0000226:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240694	2270322	1000	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=HG003_chrY_T0000227;Name=CD99P1
HG003_chrY	CAT	exon	2240694	2240815	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=exon:HG003_chrY_T0000227:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=intron:HG003_chrY_T0000227:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=exon:HG003_chrY_T0000227:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=intron:HG003_chrY_T0000227:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=exon:HG003_chrY_T0000227:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=intron:HG003_chrY_T0000227:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=exon:HG003_chrY_T0000227:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=intron:HG003_chrY_T0000227:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=exon:HG003_chrY_T0000227:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=intron:HG003_chrY_T0000227:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=exon:HG003_chrY_T0000227:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=intron:HG003_chrY_T0000227:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=exon:HG003_chrY_T0000227:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=intron:HG003_chrY_T0000227:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=exon:HG003_chrY_T0000227:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=intron:HG003_chrY_T0000227:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2270322	.	+	.	source_transcript=ENST00000850834.1;source_transcript_name=CD99P1-310;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000227;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000227;transcript_name=HG003_chrY_T0000227;gene_name=CD99P1;ID=exon:HG003_chrY_T0000227:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240694	2269927	1000	+	.	source_transcript=ENST00000850765.1;source_transcript_name=CD99P1-277;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850765.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850765.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000228;gene_name=CD99P1;ID=HG003_chrY_T0000228;Name=CD99P1
HG003_chrY	CAT	exon	2240694	2240815	.	+	.	source_transcript=ENST00000850765.1;source_transcript_name=CD99P1-277;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850765.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850765.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000228;transcript_name=HG003_chrY_T0000228;gene_name=CD99P1;ID=exon:HG003_chrY_T0000228:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850765.1;source_transcript_name=CD99P1-277;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850765.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850765.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000228;transcript_name=HG003_chrY_T0000228;gene_name=CD99P1;ID=intron:HG003_chrY_T0000228:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850765.1;source_transcript_name=CD99P1-277;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850765.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850765.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000228;transcript_name=HG003_chrY_T0000228;gene_name=CD99P1;ID=exon:HG003_chrY_T0000228:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850765.1;source_transcript_name=CD99P1-277;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850765.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850765.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000228;transcript_name=HG003_chrY_T0000228;gene_name=CD99P1;ID=intron:HG003_chrY_T0000228:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850765.1;source_transcript_name=CD99P1-277;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850765.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850765.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000228;transcript_name=HG003_chrY_T0000228;gene_name=CD99P1;ID=exon:HG003_chrY_T0000228:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2269571	.	+	.	source_transcript=ENST00000850765.1;source_transcript_name=CD99P1-277;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850765.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850765.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000228;transcript_name=HG003_chrY_T0000228;gene_name=CD99P1;ID=intron:HG003_chrY_T0000228:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850765.1;source_transcript_name=CD99P1-277;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850765.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850765.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000228;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000228;transcript_name=HG003_chrY_T0000228;gene_name=CD99P1;ID=exon:HG003_chrY_T0000228:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240703	2269933	1000	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=HG003_chrY_T0000229;Name=CD99P1
HG003_chrY	CAT	exon	2240703	2240815	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=exon:HG003_chrY_T0000229:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=intron:HG003_chrY_T0000229:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=exon:HG003_chrY_T0000229:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=intron:HG003_chrY_T0000229:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=exon:HG003_chrY_T0000229:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=intron:HG003_chrY_T0000229:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=exon:HG003_chrY_T0000229:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=intron:HG003_chrY_T0000229:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=exon:HG003_chrY_T0000229:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=intron:HG003_chrY_T0000229:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=exon:HG003_chrY_T0000229:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2269571	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=intron:HG003_chrY_T0000229:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269933	.	+	.	source_transcript=ENST00000850767.1;source_transcript_name=CD99P1-279;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850767.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000229;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000229;transcript_name=HG003_chrY_T0000229;gene_name=CD99P1;ID=exon:HG003_chrY_T0000229:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240710	2269933	1000	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=HG003_chrY_T0000230;Name=CD99P1
HG003_chrY	CAT	exon	2240710	2240815	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=exon:HG003_chrY_T0000230:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=intron:HG003_chrY_T0000230:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=exon:HG003_chrY_T0000230:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=intron:HG003_chrY_T0000230:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=exon:HG003_chrY_T0000230:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=intron:HG003_chrY_T0000230:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=exon:HG003_chrY_T0000230:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=intron:HG003_chrY_T0000230:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=exon:HG003_chrY_T0000230:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=intron:HG003_chrY_T0000230:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=exon:HG003_chrY_T0000230:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=intron:HG003_chrY_T0000230:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=exon:HG003_chrY_T0000230:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2269571	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=intron:HG003_chrY_T0000230:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269933	.	+	.	source_transcript=ENST00000850768.1;source_transcript_name=CD99P1-280;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850768.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000230;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000230;transcript_name=HG003_chrY_T0000230;gene_name=CD99P1;ID=exon:HG003_chrY_T0000230:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240710	2270322	1000	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=HG003_chrY_T0000231;Name=CD99P1
HG003_chrY	CAT	exon	2240710	2240815	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=exon:HG003_chrY_T0000231:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=intron:HG003_chrY_T0000231:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=exon:HG003_chrY_T0000231:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=intron:HG003_chrY_T0000231:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=exon:HG003_chrY_T0000231:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2250049	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=intron:HG003_chrY_T0000231:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=exon:HG003_chrY_T0000231:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=intron:HG003_chrY_T0000231:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=exon:HG003_chrY_T0000231:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=intron:HG003_chrY_T0000231:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=exon:HG003_chrY_T0000231:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=intron:HG003_chrY_T0000231:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=exon:HG003_chrY_T0000231:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=intron:HG003_chrY_T0000231:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=exon:HG003_chrY_T0000231:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=intron:HG003_chrY_T0000231:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2270322	.	+	.	source_transcript=ENST00000850762.1;source_transcript_name=CD99P1-274;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000231;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000231;transcript_name=HG003_chrY_T0000231;gene_name=CD99P1;ID=exon:HG003_chrY_T0000231:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240710	2298006	1000	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=HG003_chrY_T0000232;Name=CD99P1
HG003_chrY	CAT	exon	2240710	2240815	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=exon:HG003_chrY_T0000232:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=intron:HG003_chrY_T0000232:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=exon:HG003_chrY_T0000232:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=intron:HG003_chrY_T0000232:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=exon:HG003_chrY_T0000232:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=intron:HG003_chrY_T0000232:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=exon:HG003_chrY_T0000232:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=intron:HG003_chrY_T0000232:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=exon:HG003_chrY_T0000232:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=intron:HG003_chrY_T0000232:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=exon:HG003_chrY_T0000232:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=intron:HG003_chrY_T0000232:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=exon:HG003_chrY_T0000232:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=intron:HG003_chrY_T0000232:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=exon:HG003_chrY_T0000232:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=intron:HG003_chrY_T0000232:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=exon:HG003_chrY_T0000232:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2297486	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=intron:HG003_chrY_T0000232:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2297487	2298006	.	+	.	source_transcript=ENST00000850750.1;source_transcript_name=CD99P1-262;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000232;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000232;transcript_name=HG003_chrY_T0000232;gene_name=CD99P1;ID=exon:HG003_chrY_T0000232:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240720	2269927	1000	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=HG003_chrY_T0000233;Name=CD99P1
HG003_chrY	CAT	exon	2240720	2240815	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=exon:HG003_chrY_T0000233:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=intron:HG003_chrY_T0000233:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=exon:HG003_chrY_T0000233:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=intron:HG003_chrY_T0000233:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=exon:HG003_chrY_T0000233:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=intron:HG003_chrY_T0000233:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=exon:HG003_chrY_T0000233:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250067	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=intron:HG003_chrY_T0000233:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250068	2250094	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=exon:HG003_chrY_T0000233:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=intron:HG003_chrY_T0000233:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=exon:HG003_chrY_T0000233:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=intron:HG003_chrY_T0000233:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=exon:HG003_chrY_T0000233:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=intron:HG003_chrY_T0000233:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=exon:HG003_chrY_T0000233:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=intron:HG003_chrY_T0000233:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000711248.1;source_transcript_name=CD99P1-259;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711248.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711248.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000233;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000233;transcript_name=HG003_chrY_T0000233;gene_name=CD99P1;ID=exon:HG003_chrY_T0000233:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240720	2270319	1000	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=HG003_chrY_T0000234;Name=CD99P1
HG003_chrY	CAT	exon	2240720	2240815	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=exon:HG003_chrY_T0000234:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=intron:HG003_chrY_T0000234:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=exon:HG003_chrY_T0000234:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=intron:HG003_chrY_T0000234:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=exon:HG003_chrY_T0000234:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=intron:HG003_chrY_T0000234:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=exon:HG003_chrY_T0000234:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=intron:HG003_chrY_T0000234:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=exon:HG003_chrY_T0000234:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250703	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=intron:HG003_chrY_T0000234:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250704	2250807	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=exon:HG003_chrY_T0000234:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=intron:HG003_chrY_T0000234:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=exon:HG003_chrY_T0000234:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=intron:HG003_chrY_T0000234:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=exon:HG003_chrY_T0000234:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=intron:HG003_chrY_T0000234:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2270319	.	+	.	source_transcript=ENST00000850763.1;source_transcript_name=CD99P1-275;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850763.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000234;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000234;transcript_name=HG003_chrY_T0000234;gene_name=CD99P1;ID=exon:HG003_chrY_T0000234:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240722	2269931	1000	+	.	source_transcript=ENST00000850769.1;source_transcript_name=CD99P1-281;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850769.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850769.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000235;gene_name=CD99P1;ID=HG003_chrY_T0000235;Name=CD99P1
HG003_chrY	CAT	exon	2240722	2240815	.	+	.	source_transcript=ENST00000850769.1;source_transcript_name=CD99P1-281;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850769.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850769.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000235;transcript_name=HG003_chrY_T0000235;gene_name=CD99P1;ID=exon:HG003_chrY_T0000235:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2269571	.	+	.	source_transcript=ENST00000850769.1;source_transcript_name=CD99P1-281;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850769.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850769.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000235;transcript_name=HG003_chrY_T0000235;gene_name=CD99P1;ID=intron:HG003_chrY_T0000235:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269931	.	+	.	source_transcript=ENST00000850769.1;source_transcript_name=CD99P1-281;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850769.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850769.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000235;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000235;transcript_name=HG003_chrY_T0000235;gene_name=CD99P1;ID=exon:HG003_chrY_T0000235:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240727	2290522	1000	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=HG003_chrY_T0000236;Name=CD99P1
HG003_chrY	CAT	exon	2240727	2240815	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=exon:HG003_chrY_T0000236:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=intron:HG003_chrY_T0000236:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=exon:HG003_chrY_T0000236:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=intron:HG003_chrY_T0000236:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=exon:HG003_chrY_T0000236:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=intron:HG003_chrY_T0000236:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=exon:HG003_chrY_T0000236:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=intron:HG003_chrY_T0000236:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=exon:HG003_chrY_T0000236:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=intron:HG003_chrY_T0000236:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=exon:HG003_chrY_T0000236:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=intron:HG003_chrY_T0000236:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=exon:HG003_chrY_T0000236:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=intron:HG003_chrY_T0000236:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=exon:HG003_chrY_T0000236:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=intron:HG003_chrY_T0000236:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=exon:HG003_chrY_T0000236:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2290054	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=intron:HG003_chrY_T0000236:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2290055	2290522	.	+	.	source_transcript=ENST00000850755.1;source_transcript_name=CD99P1-267;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850755.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850755.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000236;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000236;transcript_name=HG003_chrY_T0000236;gene_name=CD99P1;ID=exon:HG003_chrY_T0000236:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240727	2290555	1000	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=HG003_chrY_T0000237;Name=CD99P1
HG003_chrY	CAT	exon	2240727	2240815	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=exon:HG003_chrY_T0000237:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=intron:HG003_chrY_T0000237:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=exon:HG003_chrY_T0000237:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=intron:HG003_chrY_T0000237:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=exon:HG003_chrY_T0000237:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=intron:HG003_chrY_T0000237:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=exon:HG003_chrY_T0000237:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=intron:HG003_chrY_T0000237:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=exon:HG003_chrY_T0000237:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=intron:HG003_chrY_T0000237:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=exon:HG003_chrY_T0000237:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=intron:HG003_chrY_T0000237:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=exon:HG003_chrY_T0000237:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=intron:HG003_chrY_T0000237:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=exon:HG003_chrY_T0000237:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=intron:HG003_chrY_T0000237:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=exon:HG003_chrY_T0000237:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2290113	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=intron:HG003_chrY_T0000237:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2290114	2290555	.	+	.	source_transcript=ENST00000850843.1;source_transcript_name=CD99P1-312;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000237;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000237;transcript_name=HG003_chrY_T0000237;gene_name=CD99P1;ID=exon:HG003_chrY_T0000237:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240727	2290523	1000	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=HG003_chrY_T0000238;Name=CD99P1
HG003_chrY	CAT	exon	2240727	2240815	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=exon:HG003_chrY_T0000238:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=intron:HG003_chrY_T0000238:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=exon:HG003_chrY_T0000238:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=intron:HG003_chrY_T0000238:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=exon:HG003_chrY_T0000238:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=intron:HG003_chrY_T0000238:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=exon:HG003_chrY_T0000238:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=intron:HG003_chrY_T0000238:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=exon:HG003_chrY_T0000238:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=intron:HG003_chrY_T0000238:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=exon:HG003_chrY_T0000238:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=intron:HG003_chrY_T0000238:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=exon:HG003_chrY_T0000238:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=intron:HG003_chrY_T0000238:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=exon:HG003_chrY_T0000238:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=intron:HG003_chrY_T0000238:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=exon:HG003_chrY_T0000238:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2290073	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=intron:HG003_chrY_T0000238:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2290074	2290523	.	+	.	source_transcript=ENST00000850753.1;source_transcript_name=CD99P1-265;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850753.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850753.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000238;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000238;transcript_name=HG003_chrY_T0000238;gene_name=CD99P1;ID=exon:HG003_chrY_T0000238:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240727	2279755	1000	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=HG003_chrY_T0000239;Name=CD99P1
HG003_chrY	CAT	exon	2240727	2240815	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=exon:HG003_chrY_T0000239:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=intron:HG003_chrY_T0000239:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=exon:HG003_chrY_T0000239:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=intron:HG003_chrY_T0000239:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=exon:HG003_chrY_T0000239:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=intron:HG003_chrY_T0000239:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=exon:HG003_chrY_T0000239:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=intron:HG003_chrY_T0000239:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=exon:HG003_chrY_T0000239:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=intron:HG003_chrY_T0000239:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=exon:HG003_chrY_T0000239:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=intron:HG003_chrY_T0000239:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=exon:HG003_chrY_T0000239:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=intron:HG003_chrY_T0000239:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=exon:HG003_chrY_T0000239:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2279109	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=intron:HG003_chrY_T0000239:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2279110	2279755	.	+	.	source_transcript=ENST00000850758.1;source_transcript_name=CD99P1-270;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850758.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850758.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000239;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000239;transcript_name=HG003_chrY_T0000239;gene_name=CD99P1;ID=exon:HG003_chrY_T0000239:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240727	2258627	1000	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=HG003_chrY_T0000240;Name=CD99P1
HG003_chrY	CAT	exon	2240727	2240815	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=exon:HG003_chrY_T0000240:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=intron:HG003_chrY_T0000240:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=exon:HG003_chrY_T0000240:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=intron:HG003_chrY_T0000240:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=exon:HG003_chrY_T0000240:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=intron:HG003_chrY_T0000240:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=exon:HG003_chrY_T0000240:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=intron:HG003_chrY_T0000240:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=exon:HG003_chrY_T0000240:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=intron:HG003_chrY_T0000240:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=exon:HG003_chrY_T0000240:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=intron:HG003_chrY_T0000240:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=exon:HG003_chrY_T0000240:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=intron:HG003_chrY_T0000240:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2258627	.	+	.	source_transcript=ENST00000850790.1;source_transcript_name=CD99P1-302;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000240;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000240;transcript_name=HG003_chrY_T0000240;gene_name=CD99P1;ID=exon:HG003_chrY_T0000240:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240727	2290554	1000	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=HG003_chrY_T0000241;Name=CD99P1
HG003_chrY	CAT	exon	2240727	2240815	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=exon:HG003_chrY_T0000241:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=intron:HG003_chrY_T0000241:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=exon:HG003_chrY_T0000241:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=intron:HG003_chrY_T0000241:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=exon:HG003_chrY_T0000241:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2250049	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=intron:HG003_chrY_T0000241:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=exon:HG003_chrY_T0000241:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=intron:HG003_chrY_T0000241:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=exon:HG003_chrY_T0000241:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=intron:HG003_chrY_T0000241:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=exon:HG003_chrY_T0000241:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=intron:HG003_chrY_T0000241:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=exon:HG003_chrY_T0000241:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=intron:HG003_chrY_T0000241:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=exon:HG003_chrY_T0000241:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2290113	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=intron:HG003_chrY_T0000241:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2290114	2290554	.	+	.	source_transcript=ENST00000850836.1;source_transcript_name=CD99P1-311;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000241;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000241;transcript_name=HG003_chrY_T0000241;gene_name=CD99P1;ID=exon:HG003_chrY_T0000241:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240727	2298007	1000	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=HG003_chrY_T0000242;Name=CD99P1
HG003_chrY	CAT	exon	2240727	2240815	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=exon:HG003_chrY_T0000242:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=intron:HG003_chrY_T0000242:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=exon:HG003_chrY_T0000242:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=intron:HG003_chrY_T0000242:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=exon:HG003_chrY_T0000242:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=intron:HG003_chrY_T0000242:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=exon:HG003_chrY_T0000242:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=intron:HG003_chrY_T0000242:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=exon:HG003_chrY_T0000242:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=intron:HG003_chrY_T0000242:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=exon:HG003_chrY_T0000242:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=intron:HG003_chrY_T0000242:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=exon:HG003_chrY_T0000242:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=intron:HG003_chrY_T0000242:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=exon:HG003_chrY_T0000242:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2297486	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=intron:HG003_chrY_T0000242:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2297487	2298007	.	+	.	source_transcript=ENST00000850751.1;source_transcript_name=CD99P1-263;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000242;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000242;transcript_name=HG003_chrY_T0000242;gene_name=CD99P1;ID=exon:HG003_chrY_T0000242:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240727	2290523	1000	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=HG003_chrY_T0000243;Name=CD99P1
HG003_chrY	CAT	exon	2240727	2240815	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=exon:HG003_chrY_T0000243:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=intron:HG003_chrY_T0000243:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=exon:HG003_chrY_T0000243:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=intron:HG003_chrY_T0000243:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=exon:HG003_chrY_T0000243:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=intron:HG003_chrY_T0000243:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=exon:HG003_chrY_T0000243:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=intron:HG003_chrY_T0000243:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=exon:HG003_chrY_T0000243:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=intron:HG003_chrY_T0000243:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=exon:HG003_chrY_T0000243:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=intron:HG003_chrY_T0000243:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=exon:HG003_chrY_T0000243:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=intron:HG003_chrY_T0000243:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=exon:HG003_chrY_T0000243:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2290054	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=intron:HG003_chrY_T0000243:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2290055	2290523	.	+	.	source_transcript=ENST00000850754.1;source_transcript_name=CD99P1-266;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850754.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850754.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000243;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000243;transcript_name=HG003_chrY_T0000243;gene_name=CD99P1;ID=exon:HG003_chrY_T0000243:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240727	2250363	1000	+	.	source_transcript=ENST00000850794.1;source_transcript_name=CD99P1-306;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850794.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000244;gene_name=CD99P1;ID=HG003_chrY_T0000244;Name=CD99P1
HG003_chrY	CAT	exon	2240727	2240815	.	+	.	source_transcript=ENST00000850794.1;source_transcript_name=CD99P1-306;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850794.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000244;transcript_name=HG003_chrY_T0000244;gene_name=CD99P1;ID=exon:HG003_chrY_T0000244:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2247126	.	+	.	source_transcript=ENST00000850794.1;source_transcript_name=CD99P1-306;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850794.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000244;transcript_name=HG003_chrY_T0000244;gene_name=CD99P1;ID=intron:HG003_chrY_T0000244:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850794.1;source_transcript_name=CD99P1-306;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850794.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000244;transcript_name=HG003_chrY_T0000244;gene_name=CD99P1;ID=exon:HG003_chrY_T0000244:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850794.1;source_transcript_name=CD99P1-306;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850794.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000244;transcript_name=HG003_chrY_T0000244;gene_name=CD99P1;ID=intron:HG003_chrY_T0000244:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250363	.	+	.	source_transcript=ENST00000850794.1;source_transcript_name=CD99P1-306;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850794.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000244;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000244;transcript_name=HG003_chrY_T0000244;gene_name=CD99P1;ID=exon:HG003_chrY_T0000244:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240732	2289642	1000	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=HG003_chrY_T0000245;Name=CD99P1
HG003_chrY	CAT	exon	2240732	2240815	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=exon:HG003_chrY_T0000245:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=intron:HG003_chrY_T0000245:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=exon:HG003_chrY_T0000245:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=intron:HG003_chrY_T0000245:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=exon:HG003_chrY_T0000245:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=intron:HG003_chrY_T0000245:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=exon:HG003_chrY_T0000245:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=intron:HG003_chrY_T0000245:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=exon:HG003_chrY_T0000245:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=intron:HG003_chrY_T0000245:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=exon:HG003_chrY_T0000245:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=intron:HG003_chrY_T0000245:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=exon:HG003_chrY_T0000245:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=intron:HG003_chrY_T0000245:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=exon:HG003_chrY_T0000245:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=intron:HG003_chrY_T0000245:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=exon:HG003_chrY_T0000245:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2289491	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=intron:HG003_chrY_T0000245:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2289492	2289642	.	+	.	source_transcript=ENST00000850756.1;source_transcript_name=CD99P1-268;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000245;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000245;transcript_name=HG003_chrY_T0000245;gene_name=CD99P1;ID=exon:HG003_chrY_T0000245:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240735	2269929	1000	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=HG003_chrY_T0000246;Name=CD99P1
HG003_chrY	CAT	exon	2240735	2240815	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=exon:HG003_chrY_T0000246:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=intron:HG003_chrY_T0000246:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=exon:HG003_chrY_T0000246:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=intron:HG003_chrY_T0000246:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=exon:HG003_chrY_T0000246:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=intron:HG003_chrY_T0000246:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=exon:HG003_chrY_T0000246:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=intron:HG003_chrY_T0000246:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=exon:HG003_chrY_T0000246:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=intron:HG003_chrY_T0000246:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=exon:HG003_chrY_T0000246:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254660	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=intron:HG003_chrY_T0000246:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254661	2254765	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=exon:HG003_chrY_T0000246:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=intron:HG003_chrY_T0000246:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=exon:HG003_chrY_T0000246:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=intron:HG003_chrY_T0000246:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269929	.	+	.	source_transcript=ENST00000850770.1;source_transcript_name=CD99P1-282;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850770.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000246;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000246;transcript_name=HG003_chrY_T0000246;gene_name=CD99P1;ID=exon:HG003_chrY_T0000246:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240735	2269927	1000	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=HG003_chrY_T0000247;Name=CD99P1
HG003_chrY	CAT	exon	2240735	2240815	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=exon:HG003_chrY_T0000247:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=intron:HG003_chrY_T0000247:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=exon:HG003_chrY_T0000247:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2250049	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=intron:HG003_chrY_T0000247:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=exon:HG003_chrY_T0000247:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=intron:HG003_chrY_T0000247:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=exon:HG003_chrY_T0000247:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=intron:HG003_chrY_T0000247:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=exon:HG003_chrY_T0000247:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=intron:HG003_chrY_T0000247:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=exon:HG003_chrY_T0000247:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=intron:HG003_chrY_T0000247:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850771.1;source_transcript_name=CD99P1-283;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850771.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850771.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000247;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000247;transcript_name=HG003_chrY_T0000247;gene_name=CD99P1;ID=exon:HG003_chrY_T0000247:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240737	2269927	1000	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=HG003_chrY_T0000248;Name=CD99P1
HG003_chrY	CAT	exon	2240737	2240815	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=exon:HG003_chrY_T0000248:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=intron:HG003_chrY_T0000248:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=exon:HG003_chrY_T0000248:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=intron:HG003_chrY_T0000248:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=exon:HG003_chrY_T0000248:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2250049	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=intron:HG003_chrY_T0000248:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=exon:HG003_chrY_T0000248:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=intron:HG003_chrY_T0000248:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=exon:HG003_chrY_T0000248:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254660	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=intron:HG003_chrY_T0000248:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254661	2254765	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=exon:HG003_chrY_T0000248:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=intron:HG003_chrY_T0000248:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=exon:HG003_chrY_T0000248:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=intron:HG003_chrY_T0000248:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850772.1;source_transcript_name=CD99P1-284;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850772.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850772.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000248;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000248;transcript_name=HG003_chrY_T0000248;gene_name=CD99P1;ID=exon:HG003_chrY_T0000248:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240737	2269927	1000	+	.	source_transcript=ENST00000850774.1;source_transcript_name=CD99P1-286;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850774.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000249;gene_name=CD99P1;ID=HG003_chrY_T0000249;Name=CD99P1
HG003_chrY	CAT	exon	2240737	2240815	.	+	.	source_transcript=ENST00000850774.1;source_transcript_name=CD99P1-286;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000249;transcript_name=HG003_chrY_T0000249;gene_name=CD99P1;ID=exon:HG003_chrY_T0000249:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850774.1;source_transcript_name=CD99P1-286;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000249;transcript_name=HG003_chrY_T0000249;gene_name=CD99P1;ID=intron:HG003_chrY_T0000249:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850774.1;source_transcript_name=CD99P1-286;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000249;transcript_name=HG003_chrY_T0000249;gene_name=CD99P1;ID=exon:HG003_chrY_T0000249:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850774.1;source_transcript_name=CD99P1-286;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000249;transcript_name=HG003_chrY_T0000249;gene_name=CD99P1;ID=intron:HG003_chrY_T0000249:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850774.1;source_transcript_name=CD99P1-286;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000249;transcript_name=HG003_chrY_T0000249;gene_name=CD99P1;ID=exon:HG003_chrY_T0000249:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2257913	.	+	.	source_transcript=ENST00000850774.1;source_transcript_name=CD99P1-286;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000249;transcript_name=HG003_chrY_T0000249;gene_name=CD99P1;ID=intron:HG003_chrY_T0000249:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850774.1;source_transcript_name=CD99P1-286;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000249;transcript_name=HG003_chrY_T0000249;gene_name=CD99P1;ID=exon:HG003_chrY_T0000249:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850774.1;source_transcript_name=CD99P1-286;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000249;transcript_name=HG003_chrY_T0000249;gene_name=CD99P1;ID=intron:HG003_chrY_T0000249:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850774.1;source_transcript_name=CD99P1-286;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000249;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000249;transcript_name=HG003_chrY_T0000249;gene_name=CD99P1;ID=exon:HG003_chrY_T0000249:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240737	2269927	1000	+	.	source_transcript=ENST00000850773.1;source_transcript_name=CD99P1-285;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850773.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000250;gene_name=CD99P1;ID=HG003_chrY_T0000250;Name=CD99P1
HG003_chrY	CAT	exon	2240737	2240815	.	+	.	source_transcript=ENST00000850773.1;source_transcript_name=CD99P1-285;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850773.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000250;transcript_name=HG003_chrY_T0000250;gene_name=CD99P1;ID=exon:HG003_chrY_T0000250:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850773.1;source_transcript_name=CD99P1-285;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850773.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000250;transcript_name=HG003_chrY_T0000250;gene_name=CD99P1;ID=intron:HG003_chrY_T0000250:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850773.1;source_transcript_name=CD99P1-285;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850773.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000250;transcript_name=HG003_chrY_T0000250;gene_name=CD99P1;ID=exon:HG003_chrY_T0000250:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850773.1;source_transcript_name=CD99P1-285;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850773.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000250;transcript_name=HG003_chrY_T0000250;gene_name=CD99P1;ID=intron:HG003_chrY_T0000250:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850773.1;source_transcript_name=CD99P1-285;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850773.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000250;transcript_name=HG003_chrY_T0000250;gene_name=CD99P1;ID=exon:HG003_chrY_T0000250:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850773.1;source_transcript_name=CD99P1-285;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850773.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000250;transcript_name=HG003_chrY_T0000250;gene_name=CD99P1;ID=intron:HG003_chrY_T0000250:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850773.1;source_transcript_name=CD99P1-285;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850773.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000250;transcript_name=HG003_chrY_T0000250;gene_name=CD99P1;ID=exon:HG003_chrY_T0000250:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2269571	.	+	.	source_transcript=ENST00000850773.1;source_transcript_name=CD99P1-285;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850773.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000250;transcript_name=HG003_chrY_T0000250;gene_name=CD99P1;ID=intron:HG003_chrY_T0000250:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850773.1;source_transcript_name=CD99P1-285;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850773.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000250;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000250;transcript_name=HG003_chrY_T0000250;gene_name=CD99P1;ID=exon:HG003_chrY_T0000250:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240738	2288840	1000	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=HG003_chrY_T0000251;Name=CD99P1
HG003_chrY	CAT	exon	2240738	2240815	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=exon:HG003_chrY_T0000251:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=intron:HG003_chrY_T0000251:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=exon:HG003_chrY_T0000251:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=intron:HG003_chrY_T0000251:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=exon:HG003_chrY_T0000251:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=intron:HG003_chrY_T0000251:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=exon:HG003_chrY_T0000251:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=intron:HG003_chrY_T0000251:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=exon:HG003_chrY_T0000251:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=intron:HG003_chrY_T0000251:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=exon:HG003_chrY_T0000251:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=intron:HG003_chrY_T0000251:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=exon:HG003_chrY_T0000251:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=intron:HG003_chrY_T0000251:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=exon:HG003_chrY_T0000251:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2286637	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=intron:HG003_chrY_T0000251:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2286638	2288840	.	+	.	source_transcript=ENST00000711252.1;source_transcript_name=CD99P1-260;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711252.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000251;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000251;transcript_name=HG003_chrY_T0000251;gene_name=CD99P1;ID=exon:HG003_chrY_T0000251:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240739	2269927	1000	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=HG003_chrY_T0000252;Name=CD99P1
HG003_chrY	CAT	exon	2240739	2240815	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=exon:HG003_chrY_T0000252:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=intron:HG003_chrY_T0000252:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=exon:HG003_chrY_T0000252:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=intron:HG003_chrY_T0000252:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=exon:HG003_chrY_T0000252:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=intron:HG003_chrY_T0000252:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=exon:HG003_chrY_T0000252:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2249842	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=intron:HG003_chrY_T0000252:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2249843	2249926	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=exon:HG003_chrY_T0000252:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2249927	2250049	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=intron:HG003_chrY_T0000252:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=exon:HG003_chrY_T0000252:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=intron:HG003_chrY_T0000252:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=exon:HG003_chrY_T0000252:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=intron:HG003_chrY_T0000252:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=exon:HG003_chrY_T0000252:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=intron:HG003_chrY_T0000252:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=exon:HG003_chrY_T0000252:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=intron:HG003_chrY_T0000252:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850775.1;source_transcript_name=CD99P1-287;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850775.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850775.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000252;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000252;transcript_name=HG003_chrY_T0000252;gene_name=CD99P1;ID=exon:HG003_chrY_T0000252:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240740	2269927	1000	+	.	source_transcript=ENST00000850776.1;source_transcript_name=CD99P1-288;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850776.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000253;gene_name=CD99P1;ID=HG003_chrY_T0000253;Name=CD99P1
HG003_chrY	CAT	exon	2240740	2240815	.	+	.	source_transcript=ENST00000850776.1;source_transcript_name=CD99P1-288;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850776.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000253;transcript_name=HG003_chrY_T0000253;gene_name=CD99P1;ID=exon:HG003_chrY_T0000253:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850776.1;source_transcript_name=CD99P1-288;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850776.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000253;transcript_name=HG003_chrY_T0000253;gene_name=CD99P1;ID=intron:HG003_chrY_T0000253:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850776.1;source_transcript_name=CD99P1-288;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850776.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000253;transcript_name=HG003_chrY_T0000253;gene_name=CD99P1;ID=exon:HG003_chrY_T0000253:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850776.1;source_transcript_name=CD99P1-288;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850776.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000253;transcript_name=HG003_chrY_T0000253;gene_name=CD99P1;ID=intron:HG003_chrY_T0000253:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850776.1;source_transcript_name=CD99P1-288;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850776.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000253;transcript_name=HG003_chrY_T0000253;gene_name=CD99P1;ID=exon:HG003_chrY_T0000253:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2254696	.	+	.	source_transcript=ENST00000850776.1;source_transcript_name=CD99P1-288;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850776.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000253;transcript_name=HG003_chrY_T0000253;gene_name=CD99P1;ID=intron:HG003_chrY_T0000253:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850776.1;source_transcript_name=CD99P1-288;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850776.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000253;transcript_name=HG003_chrY_T0000253;gene_name=CD99P1;ID=exon:HG003_chrY_T0000253:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850776.1;source_transcript_name=CD99P1-288;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850776.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000253;transcript_name=HG003_chrY_T0000253;gene_name=CD99P1;ID=intron:HG003_chrY_T0000253:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850776.1;source_transcript_name=CD99P1-288;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850776.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000253;transcript_name=HG003_chrY_T0000253;gene_name=CD99P1;ID=exon:HG003_chrY_T0000253:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850776.1;source_transcript_name=CD99P1-288;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850776.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000253;transcript_name=HG003_chrY_T0000253;gene_name=CD99P1;ID=intron:HG003_chrY_T0000253:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850776.1;source_transcript_name=CD99P1-288;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850776.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000253;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000253;transcript_name=HG003_chrY_T0000253;gene_name=CD99P1;ID=exon:HG003_chrY_T0000253:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240740	2269925	1000	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=HG003_chrY_T0000254;Name=CD99P1
HG003_chrY	CAT	exon	2240740	2240815	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=exon:HG003_chrY_T0000254:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=intron:HG003_chrY_T0000254:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=exon:HG003_chrY_T0000254:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=intron:HG003_chrY_T0000254:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=exon:HG003_chrY_T0000254:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=intron:HG003_chrY_T0000254:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=exon:HG003_chrY_T0000254:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2249842	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=intron:HG003_chrY_T0000254:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2249843	2249926	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=exon:HG003_chrY_T0000254:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2249927	2250049	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=intron:HG003_chrY_T0000254:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=exon:HG003_chrY_T0000254:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=intron:HG003_chrY_T0000254:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=exon:HG003_chrY_T0000254:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=intron:HG003_chrY_T0000254:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=exon:HG003_chrY_T0000254:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=intron:HG003_chrY_T0000254:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=exon:HG003_chrY_T0000254:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=intron:HG003_chrY_T0000254:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=exon:HG003_chrY_T0000254:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=intron:HG003_chrY_T0000254:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269925	.	+	.	source_transcript=ENST00000850777.1;source_transcript_name=CD99P1-289;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850777.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850777.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000254;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000254;transcript_name=HG003_chrY_T0000254;gene_name=CD99P1;ID=exon:HG003_chrY_T0000254:10;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240740	2258600	1000	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=HG003_chrY_T0000255;Name=CD99P1
HG003_chrY	CAT	exon	2240740	2240815	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=exon:HG003_chrY_T0000255:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=intron:HG003_chrY_T0000255:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=exon:HG003_chrY_T0000255:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=intron:HG003_chrY_T0000255:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=exon:HG003_chrY_T0000255:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=intron:HG003_chrY_T0000255:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=exon:HG003_chrY_T0000255:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2248787	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=intron:HG003_chrY_T0000255:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2248788	2248897	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=exon:HG003_chrY_T0000255:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2248898	2250049	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=intron:HG003_chrY_T0000255:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=exon:HG003_chrY_T0000255:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=intron:HG003_chrY_T0000255:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=exon:HG003_chrY_T0000255:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=intron:HG003_chrY_T0000255:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=exon:HG003_chrY_T0000255:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=intron:HG003_chrY_T0000255:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=exon:HG003_chrY_T0000255:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2258420	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=intron:HG003_chrY_T0000255:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2258421	2258600	.	+	.	source_transcript=ENST00000850791.1;source_transcript_name=CD99P1-303;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000255;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000255;transcript_name=HG003_chrY_T0000255;gene_name=CD99P1;ID=exon:HG003_chrY_T0000255:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240755	2243706	1000	+	.	source_transcript=ENST00000850795.1;source_transcript_name=CD99P1-307;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850795.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000257;gene_name=CD99P1;ID=HG003_chrY_T0000257;Name=CD99P1
HG003_chrY	CAT	exon	2240755	2240815	.	+	.	source_transcript=ENST00000850795.1;source_transcript_name=CD99P1-307;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850795.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000257;transcript_name=HG003_chrY_T0000257;gene_name=CD99P1;ID=exon:HG003_chrY_T0000257:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850795.1;source_transcript_name=CD99P1-307;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850795.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000257;transcript_name=HG003_chrY_T0000257;gene_name=CD99P1;ID=intron:HG003_chrY_T0000257:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850795.1;source_transcript_name=CD99P1-307;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850795.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000257;transcript_name=HG003_chrY_T0000257;gene_name=CD99P1;ID=exon:HG003_chrY_T0000257:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850795.1;source_transcript_name=CD99P1-307;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850795.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000257;transcript_name=HG003_chrY_T0000257;gene_name=CD99P1;ID=intron:HG003_chrY_T0000257:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243706	.	+	.	source_transcript=ENST00000850795.1;source_transcript_name=CD99P1-307;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850795.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000257;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000257;transcript_name=HG003_chrY_T0000257;gene_name=CD99P1;ID=exon:HG003_chrY_T0000257:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240755	2269927	1000	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=HG003_chrY_T0000258;Name=CD99P1
HG003_chrY	CAT	exon	2240755	2240815	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=exon:HG003_chrY_T0000258:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=intron:HG003_chrY_T0000258:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=exon:HG003_chrY_T0000258:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243425	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=intron:HG003_chrY_T0000258:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243426	2243530	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=exon:HG003_chrY_T0000258:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=intron:HG003_chrY_T0000258:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=exon:HG003_chrY_T0000258:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=intron:HG003_chrY_T0000258:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=exon:HG003_chrY_T0000258:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=intron:HG003_chrY_T0000258:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=exon:HG003_chrY_T0000258:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=intron:HG003_chrY_T0000258:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=exon:HG003_chrY_T0000258:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=intron:HG003_chrY_T0000258:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=exon:HG003_chrY_T0000258:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=intron:HG003_chrY_T0000258:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850780.1;source_transcript_name=CD99P1-292;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000258;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000258;transcript_name=HG003_chrY_T0000258;gene_name=CD99P1;ID=exon:HG003_chrY_T0000258:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240755	2269927	1000	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=HG003_chrY_T0000259;Name=CD99P1
HG003_chrY	CAT	exon	2240755	2240815	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=exon:HG003_chrY_T0000259:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=intron:HG003_chrY_T0000259:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=exon:HG003_chrY_T0000259:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=intron:HG003_chrY_T0000259:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=exon:HG003_chrY_T0000259:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=intron:HG003_chrY_T0000259:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247310	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=exon:HG003_chrY_T0000259:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247311	2250049	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=intron:HG003_chrY_T0000259:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=exon:HG003_chrY_T0000259:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=intron:HG003_chrY_T0000259:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=exon:HG003_chrY_T0000259:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=intron:HG003_chrY_T0000259:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=exon:HG003_chrY_T0000259:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=intron:HG003_chrY_T0000259:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=exon:HG003_chrY_T0000259:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=intron:HG003_chrY_T0000259:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850779.1;source_transcript_name=CD99P1-291;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000259;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000259;transcript_name=HG003_chrY_T0000259;gene_name=CD99P1;ID=exon:HG003_chrY_T0000259:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240755	2269927	1000	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=HG003_chrY_T0000260;Name=CD99P1
HG003_chrY	CAT	exon	2240755	2240815	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=exon:HG003_chrY_T0000260:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=intron:HG003_chrY_T0000260:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=exon:HG003_chrY_T0000260:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2249842	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=intron:HG003_chrY_T0000260:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2249843	2249926	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=exon:HG003_chrY_T0000260:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2249927	2250049	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=intron:HG003_chrY_T0000260:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=exon:HG003_chrY_T0000260:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=intron:HG003_chrY_T0000260:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=exon:HG003_chrY_T0000260:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=intron:HG003_chrY_T0000260:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=exon:HG003_chrY_T0000260:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=intron:HG003_chrY_T0000260:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=exon:HG003_chrY_T0000260:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=intron:HG003_chrY_T0000260:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=exon:HG003_chrY_T0000260:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=intron:HG003_chrY_T0000260:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850778.1;source_transcript_name=CD99P1-290;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850778.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850778.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000260;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000260;transcript_name=HG003_chrY_T0000260;gene_name=CD99P1;ID=exon:HG003_chrY_T0000260:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240755	2260144	1000	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=HG003_chrY_T0000261;Name=CD99P1
HG003_chrY	CAT	exon	2240755	2240815	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=exon:HG003_chrY_T0000261:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=intron:HG003_chrY_T0000261:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=exon:HG003_chrY_T0000261:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=intron:HG003_chrY_T0000261:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=exon:HG003_chrY_T0000261:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=intron:HG003_chrY_T0000261:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=exon:HG003_chrY_T0000261:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=intron:HG003_chrY_T0000261:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=exon:HG003_chrY_T0000261:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=intron:HG003_chrY_T0000261:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=exon:HG003_chrY_T0000261:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=intron:HG003_chrY_T0000261:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=exon:HG003_chrY_T0000261:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=intron:HG003_chrY_T0000261:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=exon:HG003_chrY_T0000261:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2259705	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=intron:HG003_chrY_T0000261:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2259706	2260144	.	+	.	source_transcript=ENST00000850789.1;source_transcript_name=CD99P1-301;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000261;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000261;transcript_name=HG003_chrY_T0000261;gene_name=CD99P1;ID=exon:HG003_chrY_T0000261:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2240959	2254720	1000	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=HG003_chrY_T0000262;Name=CD99P1
HG003_chrY	CAT	exon	2240959	2241024	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=exon:HG003_chrY_T0000262:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2241025	2242315	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=intron:HG003_chrY_T0000262:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=exon:HG003_chrY_T0000262:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=intron:HG003_chrY_T0000262:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=exon:HG003_chrY_T0000262:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=intron:HG003_chrY_T0000262:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=exon:HG003_chrY_T0000262:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=intron:HG003_chrY_T0000262:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=exon:HG003_chrY_T0000262:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=intron:HG003_chrY_T0000262:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=exon:HG003_chrY_T0000262:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=intron:HG003_chrY_T0000262:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254720	.	+	.	source_transcript=ENST00000850793.1;source_transcript_name=CD99P1-305;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000262;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000262;transcript_name=HG003_chrY_T0000262;gene_name=CD99P1;ID=exon:HG003_chrY_T0000262:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2241315	2269927	1000	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=HG003_chrY_T0000263;Name=CD99P1
HG003_chrY	CAT	exon	2241315	2241549	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=exon:HG003_chrY_T0000263:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2241550	2242315	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=intron:HG003_chrY_T0000263:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=exon:HG003_chrY_T0000263:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=intron:HG003_chrY_T0000263:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=exon:HG003_chrY_T0000263:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=intron:HG003_chrY_T0000263:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=exon:HG003_chrY_T0000263:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=intron:HG003_chrY_T0000263:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=exon:HG003_chrY_T0000263:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=intron:HG003_chrY_T0000263:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=exon:HG003_chrY_T0000263:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=intron:HG003_chrY_T0000263:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=exon:HG003_chrY_T0000263:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=intron:HG003_chrY_T0000263:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=exon:HG003_chrY_T0000263:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=intron:HG003_chrY_T0000263:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=exon:HG003_chrY_T0000263:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=intron:HG003_chrY_T0000263:8;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850781.1;source_transcript_name=CD99P1-293;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850781.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000263;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000263;transcript_name=HG003_chrY_T0000263;gene_name=CD99P1;ID=exon:HG003_chrY_T0000263:9;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2241354	2269920	1000	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=HG003_chrY_T0000264;Name=CD99P1
HG003_chrY	CAT	exon	2241354	2241549	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=exon:HG003_chrY_T0000264:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2241550	2242315	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=intron:HG003_chrY_T0000264:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=exon:HG003_chrY_T0000264:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=intron:HG003_chrY_T0000264:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=exon:HG003_chrY_T0000264:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2250049	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=intron:HG003_chrY_T0000264:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=exon:HG003_chrY_T0000264:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=intron:HG003_chrY_T0000264:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=exon:HG003_chrY_T0000264:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254660	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=intron:HG003_chrY_T0000264:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254661	2254765	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=exon:HG003_chrY_T0000264:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=intron:HG003_chrY_T0000264:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=exon:HG003_chrY_T0000264:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=intron:HG003_chrY_T0000264:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269920	.	+	.	source_transcript=ENST00000850782.1;source_transcript_name=CD99P1-294;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850782.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850782.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000264;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000264;transcript_name=HG003_chrY_T0000264;gene_name=CD99P1;ID=exon:HG003_chrY_T0000264:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2241686	2269931	1000	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=HG003_chrY_T0000265;Name=CD99P1
HG003_chrY	CAT	exon	2241686	2242358	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=exon:HG003_chrY_T0000265:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=intron:HG003_chrY_T0000265:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=exon:HG003_chrY_T0000265:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=intron:HG003_chrY_T0000265:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=exon:HG003_chrY_T0000265:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=intron:HG003_chrY_T0000265:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=exon:HG003_chrY_T0000265:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=intron:HG003_chrY_T0000265:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=exon:HG003_chrY_T0000265:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=intron:HG003_chrY_T0000265:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=exon:HG003_chrY_T0000265:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=intron:HG003_chrY_T0000265:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=exon:HG003_chrY_T0000265:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=intron:HG003_chrY_T0000265:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269931	.	+	.	source_transcript=ENST00000850783.1;source_transcript_name=CD99P1-295;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000265;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000265;transcript_name=HG003_chrY_T0000265;gene_name=CD99P1;ID=exon:HG003_chrY_T0000265:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2246374	2269934	1000	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=HG003_chrY_T0000267;Name=CD99P1
HG003_chrY	CAT	exon	2246374	2246438	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=exon:HG003_chrY_T0000267:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2246439	2247126	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=intron:HG003_chrY_T0000267:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=exon:HG003_chrY_T0000267:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=intron:HG003_chrY_T0000267:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=exon:HG003_chrY_T0000267:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=intron:HG003_chrY_T0000267:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=exon:HG003_chrY_T0000267:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=intron:HG003_chrY_T0000267:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=exon:HG003_chrY_T0000267:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=intron:HG003_chrY_T0000267:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=exon:HG003_chrY_T0000267:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=intron:HG003_chrY_T0000267:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269934	.	+	.	source_transcript=ENST00000850784.1;source_transcript_name=CD99P1-296;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000267;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000267;transcript_name=HG003_chrY_T0000267;gene_name=CD99P1;ID=exon:HG003_chrY_T0000267:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2246379	2269927	1000	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=HG003_chrY_T0000268;Name=CD99P1
HG003_chrY	CAT	exon	2246379	2246438	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=exon:HG003_chrY_T0000268:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2246439	2247126	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=intron:HG003_chrY_T0000268:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=exon:HG003_chrY_T0000268:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=intron:HG003_chrY_T0000268:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=exon:HG003_chrY_T0000268:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=intron:HG003_chrY_T0000268:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=exon:HG003_chrY_T0000268:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=intron:HG003_chrY_T0000268:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=exon:HG003_chrY_T0000268:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=intron:HG003_chrY_T0000268:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=exon:HG003_chrY_T0000268:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=intron:HG003_chrY_T0000268:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=exon:HG003_chrY_T0000268:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=intron:HG003_chrY_T0000268:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850785.1;source_transcript_name=CD99P1-297;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000268;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000268;transcript_name=HG003_chrY_T0000268;gene_name=CD99P1;ID=exon:HG003_chrY_T0000268:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2246398	2269933	1000	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=HG003_chrY_T0000269;Name=CD99P1
HG003_chrY	CAT	exon	2246398	2246438	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=exon:HG003_chrY_T0000269:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2246439	2247126	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=intron:HG003_chrY_T0000269:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247310	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=exon:HG003_chrY_T0000269:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247311	2250049	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=intron:HG003_chrY_T0000269:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=exon:HG003_chrY_T0000269:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=intron:HG003_chrY_T0000269:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=exon:HG003_chrY_T0000269:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=intron:HG003_chrY_T0000269:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=exon:HG003_chrY_T0000269:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=intron:HG003_chrY_T0000269:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=exon:HG003_chrY_T0000269:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=intron:HG003_chrY_T0000269:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269933	.	+	.	source_transcript=ENST00000850786.1;source_transcript_name=CD99P1-298;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000269;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000269;transcript_name=HG003_chrY_T0000269;gene_name=CD99P1;ID=exon:HG003_chrY_T0000269:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2247930	2270292	1000	+	.	source_transcript=ENST00000711253.1;source_transcript_name=CD99P1-261;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711253.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000270;gene_name=CD99P1;ID=HG003_chrY_T0000270;Name=CD99P1
HG003_chrY	CAT	exon	2247930	2250094	.	+	.	source_transcript=ENST00000711253.1;source_transcript_name=CD99P1-261;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000270;transcript_name=HG003_chrY_T0000270;gene_name=CD99P1;ID=exon:HG003_chrY_T0000270:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000711253.1;source_transcript_name=CD99P1-261;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000270;transcript_name=HG003_chrY_T0000270;gene_name=CD99P1;ID=intron:HG003_chrY_T0000270:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000711253.1;source_transcript_name=CD99P1-261;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000270;transcript_name=HG003_chrY_T0000270;gene_name=CD99P1;ID=exon:HG003_chrY_T0000270:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000711253.1;source_transcript_name=CD99P1-261;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000270;transcript_name=HG003_chrY_T0000270;gene_name=CD99P1;ID=intron:HG003_chrY_T0000270:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000711253.1;source_transcript_name=CD99P1-261;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000270;transcript_name=HG003_chrY_T0000270;gene_name=CD99P1;ID=exon:HG003_chrY_T0000270:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000711253.1;source_transcript_name=CD99P1-261;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000270;transcript_name=HG003_chrY_T0000270;gene_name=CD99P1;ID=intron:HG003_chrY_T0000270:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000711253.1;source_transcript_name=CD99P1-261;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000270;transcript_name=HG003_chrY_T0000270;gene_name=CD99P1;ID=exon:HG003_chrY_T0000270:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000711253.1;source_transcript_name=CD99P1-261;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000270;transcript_name=HG003_chrY_T0000270;gene_name=CD99P1;ID=intron:HG003_chrY_T0000270:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2270292	.	+	.	source_transcript=ENST00000711253.1;source_transcript_name=CD99P1-261;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000270;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000270;transcript_name=HG003_chrY_T0000270;gene_name=CD99P1;ID=exon:HG003_chrY_T0000270:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2250010	2269927	1000	+	.	source_transcript=ENST00000850787.1;source_transcript_name=CD99P1-299;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850787.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000271;gene_name=CD99P1;ID=HG003_chrY_T0000271;Name=CD99P1
HG003_chrY	CAT	exon	2250010	2250094	.	+	.	source_transcript=ENST00000850787.1;source_transcript_name=CD99P1-299;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000271;transcript_name=HG003_chrY_T0000271;gene_name=CD99P1;ID=exon:HG003_chrY_T0000271:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850787.1;source_transcript_name=CD99P1-299;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000271;transcript_name=HG003_chrY_T0000271;gene_name=CD99P1;ID=intron:HG003_chrY_T0000271:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850787.1;source_transcript_name=CD99P1-299;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000271;transcript_name=HG003_chrY_T0000271;gene_name=CD99P1;ID=exon:HG003_chrY_T0000271:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000850787.1;source_transcript_name=CD99P1-299;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000271;transcript_name=HG003_chrY_T0000271;gene_name=CD99P1;ID=intron:HG003_chrY_T0000271:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000850787.1;source_transcript_name=CD99P1-299;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000271;transcript_name=HG003_chrY_T0000271;gene_name=CD99P1;ID=exon:HG003_chrY_T0000271:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000850787.1;source_transcript_name=CD99P1-299;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000271;transcript_name=HG003_chrY_T0000271;gene_name=CD99P1;ID=intron:HG003_chrY_T0000271:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850787.1;source_transcript_name=CD99P1-299;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000271;transcript_name=HG003_chrY_T0000271;gene_name=CD99P1;ID=exon:HG003_chrY_T0000271:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850787.1;source_transcript_name=CD99P1-299;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000271;transcript_name=HG003_chrY_T0000271;gene_name=CD99P1;ID=intron:HG003_chrY_T0000271:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850787.1;source_transcript_name=CD99P1-299;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000271;transcript_name=HG003_chrY_T0000271;gene_name=CD99P1;ID=exon:HG003_chrY_T0000271:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850787.1;source_transcript_name=CD99P1-299;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000271;transcript_name=HG003_chrY_T0000271;gene_name=CD99P1;ID=intron:HG003_chrY_T0000271:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850787.1;source_transcript_name=CD99P1-299;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000271;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000271;transcript_name=HG003_chrY_T0000271;gene_name=CD99P1;ID=exon:HG003_chrY_T0000271:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2250035	2290544	1000	+	.	source_transcript=ENST00000850757.1;source_transcript_name=CD99P1-269;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850757.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850757.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000272;gene_name=CD99P1;ID=HG003_chrY_T0000272;Name=CD99P1
HG003_chrY	CAT	exon	2250035	2250094	.	+	.	source_transcript=ENST00000850757.1;source_transcript_name=CD99P1-269;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850757.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850757.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000272;transcript_name=HG003_chrY_T0000272;gene_name=CD99P1;ID=exon:HG003_chrY_T0000272:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850757.1;source_transcript_name=CD99P1-269;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850757.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850757.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000272;transcript_name=HG003_chrY_T0000272;gene_name=CD99P1;ID=intron:HG003_chrY_T0000272:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850757.1;source_transcript_name=CD99P1-269;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850757.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850757.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000272;transcript_name=HG003_chrY_T0000272;gene_name=CD99P1;ID=exon:HG003_chrY_T0000272:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254696	.	+	.	source_transcript=ENST00000850757.1;source_transcript_name=CD99P1-269;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850757.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850757.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000272;transcript_name=HG003_chrY_T0000272;gene_name=CD99P1;ID=intron:HG003_chrY_T0000272:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000850757.1;source_transcript_name=CD99P1-269;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850757.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850757.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000272;transcript_name=HG003_chrY_T0000272;gene_name=CD99P1;ID=exon:HG003_chrY_T0000272:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254766	2257913	.	+	.	source_transcript=ENST00000850757.1;source_transcript_name=CD99P1-269;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850757.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850757.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000272;transcript_name=HG003_chrY_T0000272;gene_name=CD99P1;ID=intron:HG003_chrY_T0000272:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850757.1;source_transcript_name=CD99P1-269;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850757.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850757.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000272;transcript_name=HG003_chrY_T0000272;gene_name=CD99P1;ID=exon:HG003_chrY_T0000272:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2290113	.	+	.	source_transcript=ENST00000850757.1;source_transcript_name=CD99P1-269;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850757.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850757.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000272;transcript_name=HG003_chrY_T0000272;gene_name=CD99P1;ID=intron:HG003_chrY_T0000272:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2290114	2290544	.	+	.	source_transcript=ENST00000850757.1;source_transcript_name=CD99P1-269;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850757.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850757.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000272;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000272;transcript_name=HG003_chrY_T0000272;gene_name=CD99P1;ID=exon:HG003_chrY_T0000272:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2250073	2269927	1000	+	.	source_transcript=ENST00000850788.1;source_transcript_name=CD99P1-300;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850788.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_G0000047;transcript_name=HG003_chrY_T0000273;gene_name=CD99P1;ID=HG003_chrY_T0000273;Name=CD99P1
HG003_chrY	CAT	exon	2250073	2250094	.	+	.	source_transcript=ENST00000850788.1;source_transcript_name=CD99P1-300;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000273;transcript_name=HG003_chrY_T0000273;gene_name=CD99P1;ID=exon:HG003_chrY_T0000273:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000850788.1;source_transcript_name=CD99P1-300;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000273;transcript_name=HG003_chrY_T0000273;gene_name=CD99P1;ID=intron:HG003_chrY_T0000273:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000850788.1;source_transcript_name=CD99P1-300;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000273;transcript_name=HG003_chrY_T0000273;gene_name=CD99P1;ID=exon:HG003_chrY_T0000273:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2257913	.	+	.	source_transcript=ENST00000850788.1;source_transcript_name=CD99P1-300;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000273;transcript_name=HG003_chrY_T0000273;gene_name=CD99P1;ID=intron:HG003_chrY_T0000273:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2257914	2257959	.	+	.	source_transcript=ENST00000850788.1;source_transcript_name=CD99P1-300;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000273;transcript_name=HG003_chrY_T0000273;gene_name=CD99P1;ID=exon:HG003_chrY_T0000273:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2257960	2269571	.	+	.	source_transcript=ENST00000850788.1;source_transcript_name=CD99P1-300;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000273;transcript_name=HG003_chrY_T0000273;gene_name=CD99P1;ID=intron:HG003_chrY_T0000273:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2269572	2269927	.	+	.	source_transcript=ENST00000850788.1;source_transcript_name=CD99P1-300;source_gene=ENSG00000292362.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292362.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000273;gene_id=HG003_chrY_G0000047;Parent=HG003_chrY_T0000273;transcript_name=HG003_chrY_T0000273;gene_name=CD99P1;ID=exon:HG003_chrY_T0000273:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2240537	2240600	.	+	.	source_gene_common_name=MIR6089;source_gene=ENSG00000292346.1;alternative_source_transcripts=ENST00000711167.1,ENST00000711167.1;gene_id=HG003_chrY_G0000048;gene_biotype=miRNA;gene_name=MIR6089;gene_sources=liftoff;ID=HG003_chrY_G0000048;Name=MIR6089
HG003_chrY	CAT	transcript	2240537	2240600	1000	+	.	source_transcript=ENST00000711167.1;source_transcript_name=MIR6089-202;source_gene=ENSG00000292346.1;source_gene_biotype=miRNA;original_gene_id=ENSG00000292346.1;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=ENST00000711167.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711167.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR6089;alternative_source_transcripts=ENST00000711167.1,ENST00000711167.1;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000048;Parent=HG003_chrY_G0000048;transcript_name=HG003_chrY_T0000220;gene_name=MIR6089;ID=HG003_chrY_T0000220;Name=MIR6089
HG003_chrY	CAT	exon	2240537	2240600	.	+	.	source_transcript=ENST00000711167.1;source_transcript_name=MIR6089-202;source_gene=ENSG00000292346.1;source_gene_biotype=miRNA;original_gene_id=ENSG00000292346.1;gene_biotype=miRNA;transcript_biotype=miRNA;alignment_id=ENST00000711167.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711167.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MIR6089;alternative_source_transcripts=ENST00000711167.1,ENST00000711167.1;transcript_id=HG003_chrY_T0000220;gene_id=HG003_chrY_G0000048;Parent=HG003_chrY_T0000220;transcript_name=HG003_chrY_T0000220;gene_name=MIR6089;ID=exon:HG003_chrY_T0000220:0;Name=MIR6089;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2240750	2254765	.	+	.	source_gene_common_name=CD99P1;source_gene=ENSG00000292361.1;gene_id=HG003_chrY_G0000049;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=CD99P1;gene_sources=liftoff;ID=HG003_chrY_G0000049;Name=CD99P1
HG003_chrY	CAT	transcript	2240750	2254765	1000	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_G0000049;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=HG003_chrY_T0000256;Name=CD99P1
HG003_chrY	CAT	exon	2240750	2240815	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=exon:HG003_chrY_T0000256:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2240816	2242315	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=intron:HG003_chrY_T0000256:0;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2242316	2242358	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=exon:HG003_chrY_T0000256:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2242359	2243461	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=intron:HG003_chrY_T0000256:1;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2243462	2243530	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=exon:HG003_chrY_T0000256:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2243531	2247126	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=intron:HG003_chrY_T0000256:2;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2247127	2247280	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=exon:HG003_chrY_T0000256:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2247281	2250049	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=intron:HG003_chrY_T0000256:3;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250050	2250094	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=exon:HG003_chrY_T0000256:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250095	2250738	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=intron:HG003_chrY_T0000256:4;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2250739	2250807	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=exon:HG003_chrY_T0000256:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2250808	2254001	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=intron:HG003_chrY_T0000256:5;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254002	2254046	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=exon:HG003_chrY_T0000256:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2254047	2254696	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=intron:HG003_chrY_T0000256:6;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2254697	2254765	.	+	.	source_transcript=ENST00000711244.1;source_transcript_name=CD99P1-257;source_gene=ENSG00000292361.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000292361.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000711244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99P1;transcript_id=HG003_chrY_T0000256;gene_id=HG003_chrY_G0000049;Parent=HG003_chrY_T0000256;transcript_name=HG003_chrY_T0000256;gene_name=CD99P1;ID=exon:HG003_chrY_T0000256:7;Name=CD99P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2244300	2246658	.	-	.	source_gene_common_name=LINC00102;source_gene=ENSG00000292347.1;alternative_source_transcripts=ENST00000711166.1,ENST00000711166.1;gene_id=HG003_chrY_G0000050;gene_biotype=lncRNA;gene_name=LINC00102;gene_sources=liftoff;ID=HG003_chrY_G0000050;Name=LINC00102
HG003_chrY	CAT	transcript	2244300	2246658	1000	-	.	source_transcript=ENST00000711166.1;source_transcript_name=LINC00102-202;source_gene=ENSG00000292347.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292347.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711166.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711166.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00102;alternative_source_transcripts=ENST00000711166.1,ENST00000711166.1;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_G0000050;transcript_name=HG003_chrY_T0000266;gene_name=LINC00102;ID=HG003_chrY_T0000266;Name=LINC00102
HG003_chrY	CAT	exon	2244300	2245008	.	-	.	source_transcript=ENST00000711166.1;source_transcript_name=LINC00102-202;source_gene=ENSG00000292347.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292347.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711166.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711166.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00102;alternative_source_transcripts=ENST00000711166.1,ENST00000711166.1;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000266;transcript_name=HG003_chrY_T0000266;gene_name=LINC00102;ID=exon:HG003_chrY_T0000266:0;Name=LINC00102;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2245009	2246027	.	-	.	source_transcript=ENST00000711166.1;source_transcript_name=LINC00102-202;source_gene=ENSG00000292347.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292347.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711166.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711166.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00102;alternative_source_transcripts=ENST00000711166.1,ENST00000711166.1;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000266;transcript_name=HG003_chrY_T0000266;gene_name=LINC00102;ID=intron:HG003_chrY_T0000266:0;Name=LINC00102;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2246028	2246658	.	-	.	source_transcript=ENST00000711166.1;source_transcript_name=LINC00102-202;source_gene=ENSG00000292347.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292347.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000711166.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711166.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00102;alternative_source_transcripts=ENST00000711166.1,ENST00000711166.1;transcript_id=HG003_chrY_T0000266;gene_id=HG003_chrY_G0000050;Parent=HG003_chrY_T0000266;transcript_name=HG003_chrY_T0000266;gene_name=LINC00102;ID=exon:HG003_chrY_T0000266:1;Name=LINC00102;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2322587	2372709	.	+	.	source_gene_common_name=CD99;source_gene=ENSG00000292348.1;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;gene_id=HG003_chrY_G0000051;gene_biotype=protein_coding;gene_name=CD99;gene_sources=liftoff;ID=HG003_chrY_G0000051;Name=CD99
HG003_chrY	CAT	transcript	2322587	2372700	100	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=HG003_chrY_T0000274;Name=CD99
HG003_chrY	CAT	exon	2322587	2322827	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=exon:HG003_chrY_T0000274:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=CDS:HG003_chrY_T0000274:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=start_codon:HG003_chrY_T0000274;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=intron:HG003_chrY_T0000274:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=exon:HG003_chrY_T0000274:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=CDS:HG003_chrY_T0000274:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=intron:HG003_chrY_T0000274:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=exon:HG003_chrY_T0000274:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2349015	2349062	.	+	2	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=CDS:HG003_chrY_T0000274:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=intron:HG003_chrY_T0000274:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=exon:HG003_chrY_T0000274:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=CDS:HG003_chrY_T0000274:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=intron:HG003_chrY_T0000274:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=exon:HG003_chrY_T0000274:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=CDS:HG003_chrY_T0000274:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=intron:HG003_chrY_T0000274:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=exon:HG003_chrY_T0000274:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=CDS:HG003_chrY_T0000274:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=intron:HG003_chrY_T0000274:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=exon:HG003_chrY_T0000274:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354723	2354773	.	+	2	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=CDS:HG003_chrY_T0000274:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=intron:HG003_chrY_T0000274:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=exon:HG003_chrY_T0000274:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=CDS:HG003_chrY_T0000274:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2364759	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=intron:HG003_chrY_T0000274:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2364760	2364777	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=exon:HG003_chrY_T0000274:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2364760	2364767	.	+	2	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=CDS:HG003_chrY_T0000274:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2364765	2364767	.	+	0	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000274;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2364778	2369602	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=intron:HG003_chrY_T0000274:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2369603	2369656	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=exon:HG003_chrY_T0000274:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2369657	2372178	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=intron:HG003_chrY_T0000274:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2372179	2372700	.	+	.	source_transcript=ENST00000711165.1;source_transcript_name=CD99-230;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711165.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711165.1,ENST00000711165.1;transcript_id=HG003_chrY_T0000274;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000274;transcript_name=HG003_chrY_T0000274;gene_name=CD99;ID=exon:HG003_chrY_T0000274:10;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322676	2372501	100	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=HG003_chrY_T0000275;Name=CD99
HG003_chrY	CAT	exon	2322676	2322827	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=exon:HG003_chrY_T0000275:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=CDS:HG003_chrY_T0000275:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=start_codon:HG003_chrY_T0000275;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=intron:HG003_chrY_T0000275:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=exon:HG003_chrY_T0000275:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=CDS:HG003_chrY_T0000275:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2351068	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=intron:HG003_chrY_T0000275:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=exon:HG003_chrY_T0000275:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=CDS:HG003_chrY_T0000275:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=intron:HG003_chrY_T0000275:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=exon:HG003_chrY_T0000275:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=CDS:HG003_chrY_T0000275:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=intron:HG003_chrY_T0000275:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=exon:HG003_chrY_T0000275:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=CDS:HG003_chrY_T0000275:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=intron:HG003_chrY_T0000275:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=exon:HG003_chrY_T0000275:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354723	2354773	.	+	2	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=CDS:HG003_chrY_T0000275:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=intron:HG003_chrY_T0000275:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=exon:HG003_chrY_T0000275:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=CDS:HG003_chrY_T0000275:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2369599	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=intron:HG003_chrY_T0000275:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2369600	2369656	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=exon:HG003_chrY_T0000275:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2369600	2369656	.	+	2	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=CDS:HG003_chrY_T0000275:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2369657	2372178	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=intron:HG003_chrY_T0000275:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2372179	2372501	.	+	.	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=exon:HG003_chrY_T0000275:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2372179	2372204	.	+	2	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=CDS:HG003_chrY_T0000275:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2372202	2372204	.	+	0	source_transcript=ENST00000711164.1;source_transcript_name=CD99-229;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711164.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711164.1,ENST00000711164.1;transcript_id=HG003_chrY_T0000275;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000275;transcript_name=HG003_chrY_T0000275;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000275;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322680	2365070	100	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=HG003_chrY_T0000276;Name=CD99
HG003_chrY	CAT	exon	2322680	2322827	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=exon:HG003_chrY_T0000276:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=CDS:HG003_chrY_T0000276:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=start_codon:HG003_chrY_T0000276;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=intron:HG003_chrY_T0000276:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=exon:HG003_chrY_T0000276:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=CDS:HG003_chrY_T0000276:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=intron:HG003_chrY_T0000276:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=exon:HG003_chrY_T0000276:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2349015	2349062	.	+	2	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=CDS:HG003_chrY_T0000276:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=intron:HG003_chrY_T0000276:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=exon:HG003_chrY_T0000276:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=CDS:HG003_chrY_T0000276:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=intron:HG003_chrY_T0000276:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=exon:HG003_chrY_T0000276:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=CDS:HG003_chrY_T0000276:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=intron:HG003_chrY_T0000276:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=exon:HG003_chrY_T0000276:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=CDS:HG003_chrY_T0000276:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=intron:HG003_chrY_T0000276:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=exon:HG003_chrY_T0000276:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354723	2354773	.	+	2	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=CDS:HG003_chrY_T0000276:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=intron:HG003_chrY_T0000276:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=exon:HG003_chrY_T0000276:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=CDS:HG003_chrY_T0000276:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2358701	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=intron:HG003_chrY_T0000276:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2358702	2358752	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=exon:HG003_chrY_T0000276:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2358702	2358752	.	+	2	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=CDS:HG003_chrY_T0000276:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2358753	2364759	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=intron:HG003_chrY_T0000276:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2364760	2365070	.	+	.	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=exon:HG003_chrY_T0000276:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2364760	2364767	.	+	2	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=CDS:HG003_chrY_T0000276:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2364765	2364767	.	+	0	source_transcript=ENST00000711163.1;source_transcript_name=CD99-228;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711163.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711163.1,ENST00000711163.1;transcript_id=HG003_chrY_T0000276;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000276;transcript_name=HG003_chrY_T0000276;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000276;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322692	2349425	1000	+	.	source_transcript=ENST00000711162.1;source_transcript_name=CD99-227;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711162.1;transcript_score=298.97;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711162.1,ENST00000711162.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000277;gene_name=CD99;ID=HG003_chrY_T0000277;Name=CD99
HG003_chrY	CAT	exon	2322692	2322827	.	+	.	source_transcript=ENST00000711162.1;source_transcript_name=CD99-227;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711162.1;transcript_score=298.97;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711162.1,ENST00000711162.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000277;transcript_name=HG003_chrY_T0000277;gene_name=CD99;ID=exon:HG003_chrY_T0000277:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=ENST00000711162.1;source_transcript_name=CD99-227;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711162.1;transcript_score=298.97;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711162.1,ENST00000711162.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000277;transcript_name=HG003_chrY_T0000277;gene_name=CD99;ID=intron:HG003_chrY_T0000277:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=ENST00000711162.1;source_transcript_name=CD99-227;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711162.1;transcript_score=298.97;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711162.1,ENST00000711162.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000277;transcript_name=HG003_chrY_T0000277;gene_name=CD99;ID=exon:HG003_chrY_T0000277:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=ENST00000711162.1;source_transcript_name=CD99-227;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711162.1;transcript_score=298.97;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711162.1,ENST00000711162.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000277;transcript_name=HG003_chrY_T0000277;gene_name=CD99;ID=intron:HG003_chrY_T0000277:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349425	.	+	.	source_transcript=ENST00000711162.1;source_transcript_name=CD99-227;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711162.1;transcript_score=298.97;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711162.1,ENST00000711162.1;transcript_id=HG003_chrY_T0000277;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000277;transcript_name=HG003_chrY_T0000277;gene_name=CD99;ID=exon:HG003_chrY_T0000277:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322695	2372709	100	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=HG003_chrY_T0000278;Name=CD99
HG003_chrY	CAT	exon	2322695	2322827	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=exon:HG003_chrY_T0000278:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=CDS:HG003_chrY_T0000278:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=start_codon:HG003_chrY_T0000278;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=intron:HG003_chrY_T0000278:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=exon:HG003_chrY_T0000278:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=CDS:HG003_chrY_T0000278:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=intron:HG003_chrY_T0000278:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=exon:HG003_chrY_T0000278:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2349015	2349062	.	+	2	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=CDS:HG003_chrY_T0000278:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=intron:HG003_chrY_T0000278:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=exon:HG003_chrY_T0000278:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=CDS:HG003_chrY_T0000278:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=intron:HG003_chrY_T0000278:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=exon:HG003_chrY_T0000278:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=CDS:HG003_chrY_T0000278:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=intron:HG003_chrY_T0000278:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=exon:HG003_chrY_T0000278:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=CDS:HG003_chrY_T0000278:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=intron:HG003_chrY_T0000278:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=exon:HG003_chrY_T0000278:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354723	2354773	.	+	2	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=CDS:HG003_chrY_T0000278:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=intron:HG003_chrY_T0000278:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=exon:HG003_chrY_T0000278:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=CDS:HG003_chrY_T0000278:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2369599	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=intron:HG003_chrY_T0000278:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2369600	2369656	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=exon:HG003_chrY_T0000278:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2369600	2369656	.	+	2	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=CDS:HG003_chrY_T0000278:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2369657	2372178	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=intron:HG003_chrY_T0000278:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2372179	2372709	.	+	.	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=exon:HG003_chrY_T0000278:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2372179	2372204	.	+	2	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=CDS:HG003_chrY_T0000278:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2372202	2372204	.	+	0	source_transcript=ENST00000711160.1;source_transcript_name=CD99-225;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711160.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711160.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711160.1,ENST00000711160.1;transcript_id=HG003_chrY_T0000278;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000278;transcript_name=HG003_chrY_T0000278;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000278;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322695	2354843	1000	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=HG003_chrY_T0000279;Name=CD99
HG003_chrY	CAT	exon	2322695	2322827	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=exon:HG003_chrY_T0000279:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=intron:HG003_chrY_T0000279:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=exon:HG003_chrY_T0000279:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=intron:HG003_chrY_T0000279:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=exon:HG003_chrY_T0000279:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=intron:HG003_chrY_T0000279:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=exon:HG003_chrY_T0000279:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=intron:HG003_chrY_T0000279:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=exon:HG003_chrY_T0000279:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=intron:HG003_chrY_T0000279:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=exon:HG003_chrY_T0000279:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=intron:HG003_chrY_T0000279:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354843	.	+	.	source_transcript=ENST00000711161.1;source_transcript_name=CD99-226;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711161.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711161.1,ENST00000711161.1;transcript_id=HG003_chrY_T0000279;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000279;transcript_name=HG003_chrY_T0000279;gene_name=CD99;ID=exon:HG003_chrY_T0000279:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322710	2365075	100	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=HG003_chrY_T0000280;Name=CD99
HG003_chrY	CAT	exon	2322710	2322827	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=exon:HG003_chrY_T0000280:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=CDS:HG003_chrY_T0000280:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=start_codon:HG003_chrY_T0000280;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=intron:HG003_chrY_T0000280:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=exon:HG003_chrY_T0000280:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=CDS:HG003_chrY_T0000280:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=intron:HG003_chrY_T0000280:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=exon:HG003_chrY_T0000280:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2349015	2349062	.	+	2	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=CDS:HG003_chrY_T0000280:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=intron:HG003_chrY_T0000280:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=exon:HG003_chrY_T0000280:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=CDS:HG003_chrY_T0000280:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=intron:HG003_chrY_T0000280:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=exon:HG003_chrY_T0000280:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=CDS:HG003_chrY_T0000280:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=intron:HG003_chrY_T0000280:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=exon:HG003_chrY_T0000280:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=CDS:HG003_chrY_T0000280:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=intron:HG003_chrY_T0000280:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=exon:HG003_chrY_T0000280:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354723	2354773	.	+	2	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=CDS:HG003_chrY_T0000280:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=intron:HG003_chrY_T0000280:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=exon:HG003_chrY_T0000280:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=CDS:HG003_chrY_T0000280:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2364759	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=intron:HG003_chrY_T0000280:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2364760	2365075	.	+	.	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=exon:HG003_chrY_T0000280:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2364760	2364767	.	+	2	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=CDS:HG003_chrY_T0000280:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2364765	2364767	.	+	0	source_transcript=ENST00000711159.1;source_transcript_name=CD99-224;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711159.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711159.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711159.1,ENST00000711159.1;transcript_id=HG003_chrY_T0000280;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000280;transcript_name=HG003_chrY_T0000280;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000280;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322713	2372690	100	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=HG003_chrY_T0000281;Name=CD99
HG003_chrY	CAT	exon	2322713	2322827	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=exon:HG003_chrY_T0000281:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=CDS:HG003_chrY_T0000281:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=start_codon:HG003_chrY_T0000281;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=intron:HG003_chrY_T0000281:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=exon:HG003_chrY_T0000281:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=CDS:HG003_chrY_T0000281:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=intron:HG003_chrY_T0000281:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=exon:HG003_chrY_T0000281:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2349015	2349062	.	+	2	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=CDS:HG003_chrY_T0000281:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=intron:HG003_chrY_T0000281:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=exon:HG003_chrY_T0000281:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=CDS:HG003_chrY_T0000281:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=intron:HG003_chrY_T0000281:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=exon:HG003_chrY_T0000281:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=CDS:HG003_chrY_T0000281:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=intron:HG003_chrY_T0000281:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=exon:HG003_chrY_T0000281:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=CDS:HG003_chrY_T0000281:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=intron:HG003_chrY_T0000281:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=exon:HG003_chrY_T0000281:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354723	2354773	.	+	2	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=CDS:HG003_chrY_T0000281:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=intron:HG003_chrY_T0000281:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=exon:HG003_chrY_T0000281:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=CDS:HG003_chrY_T0000281:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2369602	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=intron:HG003_chrY_T0000281:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2369603	2369656	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=exon:HG003_chrY_T0000281:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2369603	2369656	.	+	2	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=CDS:HG003_chrY_T0000281:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2369657	2372178	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=intron:HG003_chrY_T0000281:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2372179	2372690	.	+	.	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=exon:HG003_chrY_T0000281:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2372179	2372204	.	+	2	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=CDS:HG003_chrY_T0000281:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2372202	2372204	.	+	0	source_transcript=ENST00000711158.1;source_transcript_name=CD99-223;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711158.1,ENST00000711158.1;transcript_id=HG003_chrY_T0000281;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000281;transcript_name=HG003_chrY_T0000281;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000281;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322726	2347004	1000	+	.	source_transcript=ENST00000711157.1;source_transcript_name=CD99-222;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711157.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711157.1;transcript_score=299.844;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711157.1,ENST00000711157.1;transcript_id=HG003_chrY_T0000282;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000282;gene_name=CD99;ID=HG003_chrY_T0000282;Name=CD99
HG003_chrY	CAT	exon	2322726	2322827	.	+	.	source_transcript=ENST00000711157.1;source_transcript_name=CD99-222;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711157.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711157.1;transcript_score=299.844;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711157.1,ENST00000711157.1;transcript_id=HG003_chrY_T0000282;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000282;transcript_name=HG003_chrY_T0000282;gene_name=CD99;ID=exon:HG003_chrY_T0000282:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=ENST00000711157.1;source_transcript_name=CD99-222;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711157.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711157.1;transcript_score=299.844;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711157.1,ENST00000711157.1;transcript_id=HG003_chrY_T0000282;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000282;transcript_name=HG003_chrY_T0000282;gene_name=CD99;ID=intron:HG003_chrY_T0000282:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2347004	.	+	.	source_transcript=ENST00000711157.1;source_transcript_name=CD99-222;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711157.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711157.1;transcript_score=299.844;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711157.1,ENST00000711157.1;transcript_id=HG003_chrY_T0000282;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000282;transcript_name=HG003_chrY_T0000282;gene_name=CD99;ID=exon:HG003_chrY_T0000282:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322761	2323653	100	+	.	source_transcript=ENST00000711156.1;source_transcript_name=CD99-221;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711156.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711156.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711156.1,ENST00000711156.1;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000283;gene_name=CD99;ID=HG003_chrY_T0000283;Name=CD99
HG003_chrY	CAT	exon	2322761	2322827	.	+	.	source_transcript=ENST00000711156.1;source_transcript_name=CD99-221;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711156.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711156.1,ENST00000711156.1;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000283;transcript_name=HG003_chrY_T0000283;gene_name=CD99;ID=exon:HG003_chrY_T0000283:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=ENST00000711156.1;source_transcript_name=CD99-221;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711156.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711156.1,ENST00000711156.1;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000283;transcript_name=HG003_chrY_T0000283;gene_name=CD99;ID=CDS:HG003_chrY_T0000283:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=ENST00000711156.1;source_transcript_name=CD99-221;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711156.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711156.1,ENST00000711156.1;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000283;transcript_name=HG003_chrY_T0000283;gene_name=CD99;ID=start_codon:HG003_chrY_T0000283;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2323187	.	+	.	source_transcript=ENST00000711156.1;source_transcript_name=CD99-221;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711156.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711156.1,ENST00000711156.1;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000283;transcript_name=HG003_chrY_T0000283;gene_name=CD99;ID=intron:HG003_chrY_T0000283:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2323188	2323653	.	+	.	source_transcript=ENST00000711156.1;source_transcript_name=CD99-221;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711156.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711156.1,ENST00000711156.1;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000283;transcript_name=HG003_chrY_T0000283;gene_name=CD99;ID=exon:HG003_chrY_T0000283:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2323188	2323351	.	+	2	source_transcript=ENST00000711156.1;source_transcript_name=CD99-221;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711156.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711156.1,ENST00000711156.1;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000283;transcript_name=HG003_chrY_T0000283;gene_name=CD99;ID=CDS:HG003_chrY_T0000283:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2323349	2323351	.	+	0	source_transcript=ENST00000711156.1;source_transcript_name=CD99-221;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711156.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711156.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711156.1,ENST00000711156.1;transcript_id=HG003_chrY_T0000283;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000283;transcript_name=HG003_chrY_T0000283;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000283;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322761	2372204	1000	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=HG003_chrY_T0000284;Name=CD99
HG003_chrY	CAT	exon	2322761	2322827	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=exon:HG003_chrY_T0000284:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2322761	2322827	.	+	0	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=CDS:HG003_chrY_T0000284:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2322761	2322763	.	+	0	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=start_codon:HG003_chrY_T0000284;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2322828	2345827	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=intron:HG003_chrY_T0000284:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=exon:HG003_chrY_T0000284:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2345828	2345860	.	+	2	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=CDS:HG003_chrY_T0000284:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=intron:HG003_chrY_T0000284:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=exon:HG003_chrY_T0000284:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2349015	2349062	.	+	2	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=CDS:HG003_chrY_T0000284:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=intron:HG003_chrY_T0000284:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=exon:HG003_chrY_T0000284:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351069	2351113	.	+	2	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=CDS:HG003_chrY_T0000284:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=intron:HG003_chrY_T0000284:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=exon:HG003_chrY_T0000284:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2351764	2351832	.	+	2	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=CDS:HG003_chrY_T0000284:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=intron:HG003_chrY_T0000284:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=exon:HG003_chrY_T0000284:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354036	2354083	.	+	2	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=CDS:HG003_chrY_T0000284:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=intron:HG003_chrY_T0000284:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=exon:HG003_chrY_T0000284:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2354723	2354773	.	+	2	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=CDS:HG003_chrY_T0000284:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=intron:HG003_chrY_T0000284:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=exon:HG003_chrY_T0000284:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357669	2357782	.	+	2	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=CDS:HG003_chrY_T0000284:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2364759	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=intron:HG003_chrY_T0000284:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2364760	2364777	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=exon:HG003_chrY_T0000284:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2364760	2364767	.	+	2	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=CDS:HG003_chrY_T0000284:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2364765	2364767	.	+	0	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000284;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2364778	2369602	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=intron:HG003_chrY_T0000284:8;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2369603	2369656	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=exon:HG003_chrY_T0000284:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2369657	2372178	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=intron:HG003_chrY_T0000284:9;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2372179	2372204	.	+	.	source_transcript=ENST00000711155.1;source_transcript_name=CD99-220;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711155.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711155.1,ENST00000711155.1;transcript_id=HG003_chrY_T0000284;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000284;transcript_name=HG003_chrY_T0000284;gene_name=CD99;ID=exon:HG003_chrY_T0000284:10;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2322900	2357782	1000	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=HG003_chrY_T0000285;Name=CD99
HG003_chrY	CAT	exon	2322900	2323095	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=exon:HG003_chrY_T0000285:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2323096	2345827	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=intron:HG003_chrY_T0000285:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2345828	2345860	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=exon:HG003_chrY_T0000285:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2345861	2349014	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=intron:HG003_chrY_T0000285:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=exon:HG003_chrY_T0000285:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=intron:HG003_chrY_T0000285:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=exon:HG003_chrY_T0000285:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=intron:HG003_chrY_T0000285:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=exon:HG003_chrY_T0000285:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=intron:HG003_chrY_T0000285:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=exon:HG003_chrY_T0000285:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=intron:HG003_chrY_T0000285:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=exon:HG003_chrY_T0000285:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=intron:HG003_chrY_T0000285:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357782	.	+	.	source_transcript=ENST00000711154.1;source_transcript_name=CD99-219;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711154.1,ENST00000711154.1;transcript_id=HG003_chrY_T0000285;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000285;transcript_name=HG003_chrY_T0000285;gene_name=CD99;ID=exon:HG003_chrY_T0000285:7;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2348784	2357772	1000	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=HG003_chrY_T0000286;Name=CD99
HG003_chrY	CAT	exon	2348784	2348884	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=exon:HG003_chrY_T0000286:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2348885	2349014	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=intron:HG003_chrY_T0000286:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2349015	2349062	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=exon:HG003_chrY_T0000286:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2349063	2351068	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=intron:HG003_chrY_T0000286:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351069	2351113	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=exon:HG003_chrY_T0000286:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=intron:HG003_chrY_T0000286:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=exon:HG003_chrY_T0000286:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=intron:HG003_chrY_T0000286:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=exon:HG003_chrY_T0000286:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=intron:HG003_chrY_T0000286:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=exon:HG003_chrY_T0000286:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=intron:HG003_chrY_T0000286:5;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357772	.	+	.	source_transcript=ENST00000711153.1;source_transcript_name=CD99-218;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711153.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711153.1;transcript_score=299.78499999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711153.1,ENST00000711153.1;transcript_id=HG003_chrY_T0000286;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000286;transcript_name=HG003_chrY_T0000286;gene_name=CD99;ID=exon:HG003_chrY_T0000286:6;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2350475	2357677	1000	+	.	source_transcript=ENST00000711152.1;source_transcript_name=CD99-217;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711152.1;transcript_score=299.877;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711152.1,ENST00000711152.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000287;gene_name=CD99;ID=HG003_chrY_T0000287;Name=CD99
HG003_chrY	CAT	exon	2350475	2351113	.	+	.	source_transcript=ENST00000711152.1;source_transcript_name=CD99-217;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711152.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711152.1,ENST00000711152.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000287;transcript_name=HG003_chrY_T0000287;gene_name=CD99;ID=exon:HG003_chrY_T0000287:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351114	2351763	.	+	.	source_transcript=ENST00000711152.1;source_transcript_name=CD99-217;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711152.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711152.1,ENST00000711152.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000287;transcript_name=HG003_chrY_T0000287;gene_name=CD99;ID=intron:HG003_chrY_T0000287:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2351764	2351832	.	+	.	source_transcript=ENST00000711152.1;source_transcript_name=CD99-217;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711152.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711152.1,ENST00000711152.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000287;transcript_name=HG003_chrY_T0000287;gene_name=CD99;ID=exon:HG003_chrY_T0000287:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2351833	2354035	.	+	.	source_transcript=ENST00000711152.1;source_transcript_name=CD99-217;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711152.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711152.1,ENST00000711152.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000287;transcript_name=HG003_chrY_T0000287;gene_name=CD99;ID=intron:HG003_chrY_T0000287:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354036	2354083	.	+	.	source_transcript=ENST00000711152.1;source_transcript_name=CD99-217;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711152.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711152.1,ENST00000711152.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000287;transcript_name=HG003_chrY_T0000287;gene_name=CD99;ID=exon:HG003_chrY_T0000287:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354084	2354722	.	+	.	source_transcript=ENST00000711152.1;source_transcript_name=CD99-217;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711152.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711152.1,ENST00000711152.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000287;transcript_name=HG003_chrY_T0000287;gene_name=CD99;ID=intron:HG003_chrY_T0000287:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2354723	2354773	.	+	.	source_transcript=ENST00000711152.1;source_transcript_name=CD99-217;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711152.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711152.1,ENST00000711152.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000287;transcript_name=HG003_chrY_T0000287;gene_name=CD99;ID=exon:HG003_chrY_T0000287:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2354774	2357668	.	+	.	source_transcript=ENST00000711152.1;source_transcript_name=CD99-217;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711152.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711152.1,ENST00000711152.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000287;transcript_name=HG003_chrY_T0000287;gene_name=CD99;ID=intron:HG003_chrY_T0000287:3;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2357669	2357677	.	+	.	source_transcript=ENST00000711152.1;source_transcript_name=CD99-217;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711152.1;transcript_score=299.877;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711152.1,ENST00000711152.1;transcript_id=HG003_chrY_T0000287;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000287;transcript_name=HG003_chrY_T0000287;gene_name=CD99;ID=exon:HG003_chrY_T0000287:4;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2357750	2372525	1000	+	.	source_transcript=ENST00000711151.1;source_transcript_name=CD99-216;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711151.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711151.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711151.1,ENST00000711151.1;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_G0000051;transcript_name=HG003_chrY_T0000288;gene_name=CD99;ID=HG003_chrY_T0000288;Name=CD99
HG003_chrY	CAT	exon	2357750	2357782	.	+	.	source_transcript=ENST00000711151.1;source_transcript_name=CD99-216;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711151.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711151.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711151.1,ENST00000711151.1;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000288;transcript_name=HG003_chrY_T0000288;gene_name=CD99;ID=exon:HG003_chrY_T0000288:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2357750	2357782	.	+	2	source_transcript=ENST00000711151.1;source_transcript_name=CD99-216;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711151.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711151.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711151.1,ENST00000711151.1;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000288;transcript_name=HG003_chrY_T0000288;gene_name=CD99;ID=CDS:HG003_chrY_T0000288:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2357783	2369280	.	+	.	source_transcript=ENST00000711151.1;source_transcript_name=CD99-216;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711151.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711151.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711151.1,ENST00000711151.1;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000288;transcript_name=HG003_chrY_T0000288;gene_name=CD99;ID=intron:HG003_chrY_T0000288:0;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2369281	2369656	.	+	.	source_transcript=ENST00000711151.1;source_transcript_name=CD99-216;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711151.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711151.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711151.1,ENST00000711151.1;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000288;transcript_name=HG003_chrY_T0000288;gene_name=CD99;ID=exon:HG003_chrY_T0000288:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2369281	2369315	.	+	2	source_transcript=ENST00000711151.1;source_transcript_name=CD99-216;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711151.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711151.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711151.1,ENST00000711151.1;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000288;transcript_name=HG003_chrY_T0000288;gene_name=CD99;ID=CDS:HG003_chrY_T0000288:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2369313	2369315	.	+	0	source_transcript=ENST00000711151.1;source_transcript_name=CD99-216;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711151.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711151.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711151.1,ENST00000711151.1;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000288;transcript_name=HG003_chrY_T0000288;gene_name=CD99;ID=stop_codon:HG003_chrY_T0000288;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2369657	2372178	.	+	.	source_transcript=ENST00000711151.1;source_transcript_name=CD99-216;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711151.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711151.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711151.1,ENST00000711151.1;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000288;transcript_name=HG003_chrY_T0000288;gene_name=CD99;ID=intron:HG003_chrY_T0000288:1;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2372179	2372525	.	+	.	source_transcript=ENST00000711151.1;source_transcript_name=CD99-216;source_gene=ENSG00000292348.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292348.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711151.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711151.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD99;alternative_source_transcripts=ENST00000711151.1,ENST00000711151.1;transcript_id=HG003_chrY_T0000288;gene_id=HG003_chrY_G0000051;Parent=HG003_chrY_T0000288;transcript_name=HG003_chrY_T0000288;gene_name=CD99;ID=exon:HG003_chrY_T0000288:2;Name=CD99;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2383524	2485912	.	+	.	source_gene_common_name=XGY2;source_gene=ENSG00000290840.2;gene_id=HG003_chrY_G0000052;gene_biotype=lncRNA;gene_name=XGY2;gene_sources=liftoff;ID=HG003_chrY_G0000052;Name=XGY2
HG003_chrY	CAT	transcript	2383524	2422200	1000	+	.	source_transcript=ENST00000680285.1;source_transcript_name=XGY2-204;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680285.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_G0000052;transcript_name=HG003_chrY_T0000289;gene_name=XGY2;ID=HG003_chrY_T0000289;Name=XGY2
HG003_chrY	CAT	exon	2383524	2383776	.	+	.	source_transcript=ENST00000680285.1;source_transcript_name=XGY2-204;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680285.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000289;transcript_name=HG003_chrY_T0000289;gene_name=XGY2;ID=exon:HG003_chrY_T0000289:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2383777	2401975	.	+	.	source_transcript=ENST00000680285.1;source_transcript_name=XGY2-204;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680285.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000289;transcript_name=HG003_chrY_T0000289;gene_name=XGY2;ID=intron:HG003_chrY_T0000289:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2401976	2402017	.	+	.	source_transcript=ENST00000680285.1;source_transcript_name=XGY2-204;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680285.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000289;transcript_name=HG003_chrY_T0000289;gene_name=XGY2;ID=exon:HG003_chrY_T0000289:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2402018	2405997	.	+	.	source_transcript=ENST00000680285.1;source_transcript_name=XGY2-204;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680285.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000289;transcript_name=HG003_chrY_T0000289;gene_name=XGY2;ID=intron:HG003_chrY_T0000289:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2405998	2406021	.	+	.	source_transcript=ENST00000680285.1;source_transcript_name=XGY2-204;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680285.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000289;transcript_name=HG003_chrY_T0000289;gene_name=XGY2;ID=exon:HG003_chrY_T0000289:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2406022	2421027	.	+	.	source_transcript=ENST00000680285.1;source_transcript_name=XGY2-204;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680285.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000289;transcript_name=HG003_chrY_T0000289;gene_name=XGY2;ID=intron:HG003_chrY_T0000289:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2421028	2422200	.	+	.	source_transcript=ENST00000680285.1;source_transcript_name=XGY2-204;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680285.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000289;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000289;transcript_name=HG003_chrY_T0000289;gene_name=XGY2;ID=exon:HG003_chrY_T0000289:3;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2383737	2418913	1000	+	.	source_transcript=ENST00000680845.1;source_transcript_name=XGY2-205;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680845.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_G0000052;transcript_name=HG003_chrY_T0000290;gene_name=XGY2;ID=HG003_chrY_T0000290;Name=XGY2
HG003_chrY	CAT	exon	2383737	2383776	.	+	.	source_transcript=ENST00000680845.1;source_transcript_name=XGY2-205;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000290;transcript_name=HG003_chrY_T0000290;gene_name=XGY2;ID=exon:HG003_chrY_T0000290:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2383777	2401975	.	+	.	source_transcript=ENST00000680845.1;source_transcript_name=XGY2-205;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000290;transcript_name=HG003_chrY_T0000290;gene_name=XGY2;ID=intron:HG003_chrY_T0000290:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2401976	2402017	.	+	.	source_transcript=ENST00000680845.1;source_transcript_name=XGY2-205;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000290;transcript_name=HG003_chrY_T0000290;gene_name=XGY2;ID=exon:HG003_chrY_T0000290:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2402018	2405997	.	+	.	source_transcript=ENST00000680845.1;source_transcript_name=XGY2-205;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000290;transcript_name=HG003_chrY_T0000290;gene_name=XGY2;ID=intron:HG003_chrY_T0000290:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2405998	2406021	.	+	.	source_transcript=ENST00000680845.1;source_transcript_name=XGY2-205;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000290;transcript_name=HG003_chrY_T0000290;gene_name=XGY2;ID=exon:HG003_chrY_T0000290:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2406022	2418273	.	+	.	source_transcript=ENST00000680845.1;source_transcript_name=XGY2-205;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000290;transcript_name=HG003_chrY_T0000290;gene_name=XGY2;ID=intron:HG003_chrY_T0000290:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2418274	2418332	.	+	.	source_transcript=ENST00000680845.1;source_transcript_name=XGY2-205;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000290;transcript_name=HG003_chrY_T0000290;gene_name=XGY2;ID=exon:HG003_chrY_T0000290:3;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2418333	2418758	.	+	.	source_transcript=ENST00000680845.1;source_transcript_name=XGY2-205;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000290;transcript_name=HG003_chrY_T0000290;gene_name=XGY2;ID=intron:HG003_chrY_T0000290:3;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2418759	2418913	.	+	.	source_transcript=ENST00000680845.1;source_transcript_name=XGY2-205;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000290;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000290;transcript_name=HG003_chrY_T0000290;gene_name=XGY2;ID=exon:HG003_chrY_T0000290:4;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2383737	2406278	1000	+	.	source_transcript=ENST00000680009.1;source_transcript_name=XGY2-203;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680009.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680009.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_G0000052;transcript_name=HG003_chrY_T0000291;gene_name=XGY2;ID=HG003_chrY_T0000291;Name=XGY2
HG003_chrY	CAT	exon	2383737	2383776	.	+	.	source_transcript=ENST00000680009.1;source_transcript_name=XGY2-203;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680009.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680009.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000291;transcript_name=HG003_chrY_T0000291;gene_name=XGY2;ID=exon:HG003_chrY_T0000291:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2383777	2401975	.	+	.	source_transcript=ENST00000680009.1;source_transcript_name=XGY2-203;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680009.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680009.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000291;transcript_name=HG003_chrY_T0000291;gene_name=XGY2;ID=intron:HG003_chrY_T0000291:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2401976	2402017	.	+	.	source_transcript=ENST00000680009.1;source_transcript_name=XGY2-203;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680009.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680009.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000291;transcript_name=HG003_chrY_T0000291;gene_name=XGY2;ID=exon:HG003_chrY_T0000291:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2402018	2405997	.	+	.	source_transcript=ENST00000680009.1;source_transcript_name=XGY2-203;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680009.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680009.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000291;transcript_name=HG003_chrY_T0000291;gene_name=XGY2;ID=intron:HG003_chrY_T0000291:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2405998	2406278	.	+	.	source_transcript=ENST00000680009.1;source_transcript_name=XGY2-203;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000680009.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000680009.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000291;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000291;transcript_name=HG003_chrY_T0000291;gene_name=XGY2;ID=exon:HG003_chrY_T0000291:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2383737	2476959	1000	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_G0000052;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=HG003_chrY_T0000292;Name=XGY2
HG003_chrY	CAT	exon	2383737	2383776	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=exon:HG003_chrY_T0000292:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2383777	2401975	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=intron:HG003_chrY_T0000292:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2401976	2402017	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=exon:HG003_chrY_T0000292:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2402018	2405997	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=intron:HG003_chrY_T0000292:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2405998	2406021	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=exon:HG003_chrY_T0000292:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2406022	2472755	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=intron:HG003_chrY_T0000292:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2472756	2472897	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=exon:HG003_chrY_T0000292:3;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2472898	2473434	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=intron:HG003_chrY_T0000292:3;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2473435	2473512	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=exon:HG003_chrY_T0000292:4;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2473513	2475346	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=intron:HG003_chrY_T0000292:4;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2475347	2475527	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=exon:HG003_chrY_T0000292:5;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2475528	2476915	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=intron:HG003_chrY_T0000292:5;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2476916	2476959	.	+	.	source_transcript=ENST00000679518.1;source_transcript_name=XGY2-201;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000292;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000292;transcript_name=HG003_chrY_T0000292;gene_name=XGY2;ID=exon:HG003_chrY_T0000292:6;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2383737	2485912	1000	+	.	source_transcript=ENST00000681940.1;source_transcript_name=XGY2-207;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681940.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681940.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_G0000052;transcript_name=HG003_chrY_T0000293;gene_name=XGY2;ID=HG003_chrY_T0000293;Name=XGY2
HG003_chrY	CAT	exon	2383737	2383776	.	+	.	source_transcript=ENST00000681940.1;source_transcript_name=XGY2-207;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681940.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681940.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000293;transcript_name=HG003_chrY_T0000293;gene_name=XGY2;ID=exon:HG003_chrY_T0000293:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2383777	2401975	.	+	.	source_transcript=ENST00000681940.1;source_transcript_name=XGY2-207;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681940.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681940.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000293;transcript_name=HG003_chrY_T0000293;gene_name=XGY2;ID=intron:HG003_chrY_T0000293:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2401976	2402017	.	+	.	source_transcript=ENST00000681940.1;source_transcript_name=XGY2-207;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681940.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681940.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000293;transcript_name=HG003_chrY_T0000293;gene_name=XGY2;ID=exon:HG003_chrY_T0000293:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2402018	2405997	.	+	.	source_transcript=ENST00000681940.1;source_transcript_name=XGY2-207;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681940.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681940.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000293;transcript_name=HG003_chrY_T0000293;gene_name=XGY2;ID=intron:HG003_chrY_T0000293:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2405998	2406021	.	+	.	source_transcript=ENST00000681940.1;source_transcript_name=XGY2-207;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681940.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681940.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000293;transcript_name=HG003_chrY_T0000293;gene_name=XGY2;ID=exon:HG003_chrY_T0000293:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2406022	2476915	.	+	.	source_transcript=ENST00000681940.1;source_transcript_name=XGY2-207;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681940.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681940.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000293;transcript_name=HG003_chrY_T0000293;gene_name=XGY2;ID=intron:HG003_chrY_T0000293:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2476916	2477013	.	+	.	source_transcript=ENST00000681940.1;source_transcript_name=XGY2-207;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681940.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681940.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000293;transcript_name=HG003_chrY_T0000293;gene_name=XGY2;ID=exon:HG003_chrY_T0000293:3;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2477014	2485870	.	+	.	source_transcript=ENST00000681940.1;source_transcript_name=XGY2-207;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681940.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681940.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000293;transcript_name=HG003_chrY_T0000293;gene_name=XGY2;ID=intron:HG003_chrY_T0000293:3;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2485871	2485912	.	+	.	source_transcript=ENST00000681940.1;source_transcript_name=XGY2-207;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681940.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681940.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000293;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000293;transcript_name=HG003_chrY_T0000293;gene_name=XGY2;ID=exon:HG003_chrY_T0000293:4;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2383737	2418849	1000	+	.	source_transcript=ENST00000679825.1;source_transcript_name=XGY2-202;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679825.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_G0000052;transcript_name=HG003_chrY_T0000294;gene_name=XGY2;ID=HG003_chrY_T0000294;Name=XGY2
HG003_chrY	CAT	exon	2383737	2383776	.	+	.	source_transcript=ENST00000679825.1;source_transcript_name=XGY2-202;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679825.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000294;transcript_name=HG003_chrY_T0000294;gene_name=XGY2;ID=exon:HG003_chrY_T0000294:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2383777	2401975	.	+	.	source_transcript=ENST00000679825.1;source_transcript_name=XGY2-202;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679825.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000294;transcript_name=HG003_chrY_T0000294;gene_name=XGY2;ID=intron:HG003_chrY_T0000294:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2401976	2402017	.	+	.	source_transcript=ENST00000679825.1;source_transcript_name=XGY2-202;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679825.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000294;transcript_name=HG003_chrY_T0000294;gene_name=XGY2;ID=exon:HG003_chrY_T0000294:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2402018	2405997	.	+	.	source_transcript=ENST00000679825.1;source_transcript_name=XGY2-202;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679825.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000294;transcript_name=HG003_chrY_T0000294;gene_name=XGY2;ID=intron:HG003_chrY_T0000294:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2405998	2406021	.	+	.	source_transcript=ENST00000679825.1;source_transcript_name=XGY2-202;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679825.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000294;transcript_name=HG003_chrY_T0000294;gene_name=XGY2;ID=exon:HG003_chrY_T0000294:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2406022	2418273	.	+	.	source_transcript=ENST00000679825.1;source_transcript_name=XGY2-202;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679825.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000294;transcript_name=HG003_chrY_T0000294;gene_name=XGY2;ID=intron:HG003_chrY_T0000294:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2418274	2418849	.	+	.	source_transcript=ENST00000679825.1;source_transcript_name=XGY2-202;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000679825.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000679825.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000294;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000294;transcript_name=HG003_chrY_T0000294;gene_name=XGY2;ID=exon:HG003_chrY_T0000294:3;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2383737	2476959	1000	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_G0000052;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=HG003_chrY_T0000295;Name=XGY2
HG003_chrY	CAT	exon	2383737	2383776	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=exon:HG003_chrY_T0000295:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2383777	2401975	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=intron:HG003_chrY_T0000295:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2401976	2402017	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=exon:HG003_chrY_T0000295:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2402018	2405997	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=intron:HG003_chrY_T0000295:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2405998	2406021	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=exon:HG003_chrY_T0000295:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2406022	2472297	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=intron:HG003_chrY_T0000295:2;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2472298	2472353	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=exon:HG003_chrY_T0000295:3;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2472354	2472755	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=intron:HG003_chrY_T0000295:3;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2472756	2472897	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=exon:HG003_chrY_T0000295:4;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2472898	2473434	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=intron:HG003_chrY_T0000295:4;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2473435	2473512	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=exon:HG003_chrY_T0000295:5;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2473513	2475346	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=intron:HG003_chrY_T0000295:5;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2475347	2475527	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=exon:HG003_chrY_T0000295:6;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2475528	2476915	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=intron:HG003_chrY_T0000295:6;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2476916	2476959	.	+	.	source_transcript=ENST00000681787.1;source_transcript_name=XGY2-206;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000681787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000681787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000295;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000295;transcript_name=HG003_chrY_T0000295;gene_name=XGY2;ID=exon:HG003_chrY_T0000295:7;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2418274	2422041	1000	+	.	source_transcript=ENST00000819779.1;source_transcript_name=XGY2-208;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000819779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000819779.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_G0000052;transcript_name=HG003_chrY_T0000299;gene_name=XGY2;ID=HG003_chrY_T0000299;Name=XGY2
HG003_chrY	CAT	exon	2418274	2418332	.	+	.	source_transcript=ENST00000819779.1;source_transcript_name=XGY2-208;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000819779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000819779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000299;transcript_name=HG003_chrY_T0000299;gene_name=XGY2;ID=exon:HG003_chrY_T0000299:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2418333	2421027	.	+	.	source_transcript=ENST00000819779.1;source_transcript_name=XGY2-208;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000819779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000819779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000299;transcript_name=HG003_chrY_T0000299;gene_name=XGY2;ID=intron:HG003_chrY_T0000299:0;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2421028	2422041	.	+	.	source_transcript=ENST00000819779.1;source_transcript_name=XGY2-208;source_gene=ENSG00000290840.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290840.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000819779.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000819779.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY2;transcript_id=HG003_chrY_T0000299;gene_id=HG003_chrY_G0000052;Parent=HG003_chrY_T0000299;transcript_name=HG003_chrY_T0000299;gene_name=XGY2;ID=exon:HG003_chrY_T0000299:1;Name=XGY2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2383737	2406021	.	+	.	source_gene_common_name=ENSG00000288686;source_gene=ENSG00000288686.1;gene_id=HG003_chrY_G0000053;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000288686;gene_sources=liftoff;ID=HG003_chrY_G0000053;Name=ENSG00000288686
HG003_chrY	CAT	transcript	2383737	2406021	1000	+	.	source_transcript=ENST00000683447.1;source_transcript_name=ENST00000683447;source_gene=ENSG00000288686.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000288686.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000683447.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000683447.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288686;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000053;Parent=HG003_chrY_G0000053;transcript_name=HG003_chrY_T0000296;gene_name=ENSG00000288686;ID=HG003_chrY_T0000296;Name=ENSG00000288686
HG003_chrY	CAT	exon	2383737	2383776	.	+	.	source_transcript=ENST00000683447.1;source_transcript_name=ENST00000683447;source_gene=ENSG00000288686.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000288686.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000683447.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000683447.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288686;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000053;Parent=HG003_chrY_T0000296;transcript_name=HG003_chrY_T0000296;gene_name=ENSG00000288686;ID=exon:HG003_chrY_T0000296:0;Name=ENSG00000288686;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2383777	2401975	.	+	.	source_transcript=ENST00000683447.1;source_transcript_name=ENST00000683447;source_gene=ENSG00000288686.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000288686.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000683447.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000683447.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288686;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000053;Parent=HG003_chrY_T0000296;transcript_name=HG003_chrY_T0000296;gene_name=ENSG00000288686;ID=intron:HG003_chrY_T0000296:0;Name=ENSG00000288686;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2401976	2402017	.	+	.	source_transcript=ENST00000683447.1;source_transcript_name=ENST00000683447;source_gene=ENSG00000288686.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000288686.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000683447.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000683447.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288686;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000053;Parent=HG003_chrY_T0000296;transcript_name=HG003_chrY_T0000296;gene_name=ENSG00000288686;ID=exon:HG003_chrY_T0000296:1;Name=ENSG00000288686;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2402018	2405997	.	+	.	source_transcript=ENST00000683447.1;source_transcript_name=ENST00000683447;source_gene=ENSG00000288686.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000288686.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000683447.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000683447.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288686;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000053;Parent=HG003_chrY_T0000296;transcript_name=HG003_chrY_T0000296;gene_name=ENSG00000288686;ID=intron:HG003_chrY_T0000296:1;Name=ENSG00000288686;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2405998	2406021	.	+	.	source_transcript=ENST00000683447.1;source_transcript_name=ENST00000683447;source_gene=ENSG00000288686.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000288686.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000683447.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000683447.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288686;transcript_id=HG003_chrY_T0000296;gene_id=HG003_chrY_G0000053;Parent=HG003_chrY_T0000296;transcript_name=HG003_chrY_T0000296;gene_name=ENSG00000288686;ID=exon:HG003_chrY_T0000296:2;Name=ENSG00000288686;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2416028	2416132	.	+	.	source_gene_common_name=RNU6-1334P;source_gene=ENSG00000251841.1;alternative_source_transcripts=ENST00000516032.1,ENST00000516032.1;gene_id=HG003_chrY_G0000054;gene_biotype=snRNA;gene_name=RNU6-1334P;gene_sources=liftoff;ID=HG003_chrY_G0000054;Name=RNU6-1334P
HG003_chrY	CAT	transcript	2416028	2416132	1000	+	.	source_transcript=ENST00000516032.1;source_transcript_name=RNU6-1334P-201;source_gene=ENSG00000251841.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000251841.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516032.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516032.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-1334P;alternative_source_transcripts=ENST00000516032.1,ENST00000516032.1;transcript_id=HG003_chrY_T0000297;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_G0000054;transcript_name=HG003_chrY_T0000297;gene_name=RNU6-1334P;ID=HG003_chrY_T0000297;Name=RNU6-1334P
HG003_chrY	CAT	exon	2416028	2416132	.	+	.	source_transcript=ENST00000516032.1;source_transcript_name=RNU6-1334P-201;source_gene=ENSG00000251841.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000251841.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516032.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516032.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-1334P;alternative_source_transcripts=ENST00000516032.1,ENST00000516032.1;transcript_id=HG003_chrY_T0000297;gene_id=HG003_chrY_G0000054;Parent=HG003_chrY_T0000297;transcript_name=HG003_chrY_T0000297;gene_name=RNU6-1334P;ID=exon:HG003_chrY_T0000297:0;Name=RNU6-1334P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2418134	2418961	.	-	.	source_gene_common_name=SRY;source_gene=ENSG00000184895.8;alternative_source_transcripts=ENST00000383070.2,ENST00000383070.2;gene_id=HG003_chrY_G0000055;gene_biotype=protein_coding;gene_name=SRY;gene_sources=liftoff;ID=HG003_chrY_G0000055;Name=SRY
HG003_chrY	CAT	transcript	2418134	2418961	100	-	.	source_transcript=ENST00000383070.2;source_transcript_name=SRY-201;source_gene=ENSG00000184895.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000184895.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383070.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000383070.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=ENST00000383070.2,ENST00000383070.2;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_G0000055;transcript_name=HG003_chrY_T0000298;gene_name=SRY;ID=HG003_chrY_T0000298;Name=SRY
HG003_chrY	CAT	exon	2418134	2418961	.	-	.	source_transcript=ENST00000383070.2;source_transcript_name=SRY-201;source_gene=ENSG00000184895.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000184895.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383070.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000383070.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=ENST00000383070.2,ENST00000383070.2;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000298;transcript_name=HG003_chrY_T0000298;gene_name=SRY;ID=exon:HG003_chrY_T0000298:0;Name=SRY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2418268	2418882	.	-	0	source_transcript=ENST00000383070.2;source_transcript_name=SRY-201;source_gene=ENSG00000184895.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000184895.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383070.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000383070.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=ENST00000383070.2,ENST00000383070.2;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000298;transcript_name=HG003_chrY_T0000298;gene_name=SRY;ID=CDS:HG003_chrY_T0000298:0;Name=SRY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2418268	2418270	.	-	0	source_transcript=ENST00000383070.2;source_transcript_name=SRY-201;source_gene=ENSG00000184895.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000184895.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383070.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000383070.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=ENST00000383070.2,ENST00000383070.2;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000298;transcript_name=HG003_chrY_T0000298;gene_name=SRY;ID=stop_codon:HG003_chrY_T0000298;Name=SRY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2418880	2418882	.	-	0	source_transcript=ENST00000383070.2;source_transcript_name=SRY-201;source_gene=ENSG00000184895.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000184895.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383070.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000383070.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRY;alternative_source_transcripts=ENST00000383070.2,ENST00000383070.2;transcript_id=HG003_chrY_T0000298;gene_id=HG003_chrY_G0000055;Parent=HG003_chrY_T0000298;transcript_name=HG003_chrY_T0000298;gene_name=SRY;ID=start_codon:HG003_chrY_T0000298;Name=SRY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2421106	2421607	.	+	.	source_gene_common_name=RNASEH2CP1;source_gene=ENSG00000237659.1;gene_id=HG003_chrY_G0000056;gene_biotype=transcribed_processed_pseudogene;gene_name=RNASEH2CP1;gene_sources=liftoff;ID=HG003_chrY_G0000056;Name=RNASEH2CP1
HG003_chrY	CAT	transcript	2421106	2421607	1000	+	.	source_transcript=ENST00000454281.1;source_transcript_name=RNASEH2CP1-201;source_gene=ENSG00000237659.1;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000237659.1;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000454281.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454281.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNASEH2CP1;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_G0000056;transcript_name=HG003_chrY_T0000300;gene_name=RNASEH2CP1;ID=HG003_chrY_T0000300;Name=RNASEH2CP1
HG003_chrY	CAT	exon	2421106	2421607	.	+	.	source_transcript=ENST00000454281.1;source_transcript_name=RNASEH2CP1-201;source_gene=ENSG00000237659.1;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000237659.1;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000454281.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454281.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNASEH2CP1;transcript_id=HG003_chrY_T0000300;gene_id=HG003_chrY_G0000056;Parent=HG003_chrY_T0000300;transcript_name=HG003_chrY_T0000300;gene_name=RNASEH2CP1;ID=exon:HG003_chrY_T0000300:0;Name=RNASEH2CP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2445610	2456748	.	+	.	source_gene_common_name=ENSG00000300312;source_gene=ENSG00000300312.1;alternative_source_transcripts=ENST00000770736.1,ENST00000770736.1;gene_id=HG003_chrY_G0000057;gene_biotype=lncRNA;gene_name=ENSG00000300312;gene_sources=liftoff;ID=HG003_chrY_G0000057;Name=ENSG00000300312
HG003_chrY	CAT	transcript	2445610	2456748	1000	+	.	source_transcript=ENST00000770736.1;source_transcript_name=ENST00000770736;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770736.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770736.1,ENST00000770736.1;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_G0000057;transcript_name=HG003_chrY_T0000301;gene_name=ENSG00000300312;ID=HG003_chrY_T0000301;Name=ENSG00000300312
HG003_chrY	CAT	exon	2445610	2445645	.	+	.	source_transcript=ENST00000770736.1;source_transcript_name=ENST00000770736;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770736.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770736.1,ENST00000770736.1;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000301;transcript_name=HG003_chrY_T0000301;gene_name=ENSG00000300312;ID=exon:HG003_chrY_T0000301:0;Name=ENSG00000300312;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2445646	2455752	.	+	.	source_transcript=ENST00000770736.1;source_transcript_name=ENST00000770736;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770736.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770736.1,ENST00000770736.1;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000301;transcript_name=HG003_chrY_T0000301;gene_name=ENSG00000300312;ID=intron:HG003_chrY_T0000301:0;Name=ENSG00000300312;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2455753	2455975	.	+	.	source_transcript=ENST00000770736.1;source_transcript_name=ENST00000770736;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770736.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770736.1,ENST00000770736.1;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000301;transcript_name=HG003_chrY_T0000301;gene_name=ENSG00000300312;ID=exon:HG003_chrY_T0000301:1;Name=ENSG00000300312;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2455976	2456455	.	+	.	source_transcript=ENST00000770736.1;source_transcript_name=ENST00000770736;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770736.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770736.1,ENST00000770736.1;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000301;transcript_name=HG003_chrY_T0000301;gene_name=ENSG00000300312;ID=intron:HG003_chrY_T0000301:1;Name=ENSG00000300312;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2456456	2456748	.	+	.	source_transcript=ENST00000770736.1;source_transcript_name=ENST00000770736;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770736.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770736.1,ENST00000770736.1;transcript_id=HG003_chrY_T0000301;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000301;transcript_name=HG003_chrY_T0000301;gene_name=ENSG00000300312;ID=exon:HG003_chrY_T0000301:2;Name=ENSG00000300312;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2445610	2455418	1000	+	.	source_transcript=ENST00000770737.1;source_transcript_name=ENST00000770737;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770737.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770737.1,ENST00000770737.1;transcript_id=HG003_chrY_T0000302;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_G0000057;transcript_name=HG003_chrY_T0000302;gene_name=ENSG00000300312;ID=HG003_chrY_T0000302;Name=ENSG00000300312
HG003_chrY	CAT	exon	2445610	2445645	.	+	.	source_transcript=ENST00000770737.1;source_transcript_name=ENST00000770737;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770737.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770737.1,ENST00000770737.1;transcript_id=HG003_chrY_T0000302;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000302;transcript_name=HG003_chrY_T0000302;gene_name=ENSG00000300312;ID=exon:HG003_chrY_T0000302:0;Name=ENSG00000300312;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2445646	2454712	.	+	.	source_transcript=ENST00000770737.1;source_transcript_name=ENST00000770737;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770737.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770737.1,ENST00000770737.1;transcript_id=HG003_chrY_T0000302;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000302;transcript_name=HG003_chrY_T0000302;gene_name=ENSG00000300312;ID=intron:HG003_chrY_T0000302:0;Name=ENSG00000300312;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2454713	2455418	.	+	.	source_transcript=ENST00000770737.1;source_transcript_name=ENST00000770737;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770737.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770737.1,ENST00000770737.1;transcript_id=HG003_chrY_T0000302;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000302;transcript_name=HG003_chrY_T0000302;gene_name=ENSG00000300312;ID=exon:HG003_chrY_T0000302:1;Name=ENSG00000300312;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2455848	2456736	1000	+	.	source_transcript=ENST00000770738.1;source_transcript_name=ENST00000770738;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770738.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770738.1,ENST00000770738.1;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_G0000057;transcript_name=HG003_chrY_T0000303;gene_name=ENSG00000300312;ID=HG003_chrY_T0000303;Name=ENSG00000300312
HG003_chrY	CAT	exon	2455848	2455975	.	+	.	source_transcript=ENST00000770738.1;source_transcript_name=ENST00000770738;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770738.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770738.1,ENST00000770738.1;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000303;transcript_name=HG003_chrY_T0000303;gene_name=ENSG00000300312;ID=exon:HG003_chrY_T0000303:0;Name=ENSG00000300312;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2455976	2456455	.	+	.	source_transcript=ENST00000770738.1;source_transcript_name=ENST00000770738;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770738.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770738.1,ENST00000770738.1;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000303;transcript_name=HG003_chrY_T0000303;gene_name=ENSG00000300312;ID=intron:HG003_chrY_T0000303:0;Name=ENSG00000300312;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2456456	2456736	.	+	.	source_transcript=ENST00000770738.1;source_transcript_name=ENST00000770738;source_gene=ENSG00000300312.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300312.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770738.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300312;alternative_source_transcripts=ENST00000770738.1,ENST00000770738.1;transcript_id=HG003_chrY_T0000303;gene_id=HG003_chrY_G0000057;Parent=HG003_chrY_T0000303;transcript_name=HG003_chrY_T0000303;gene_name=ENSG00000300312;ID=exon:HG003_chrY_T0000303:1;Name=ENSG00000300312;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2459252	2459488	.	+	.	source_gene_common_name=TOMM22P2;source_gene=ENSG00000232195.1;alternative_source_transcripts=ENST00000430735.1,ENST00000430735.1;gene_id=HG003_chrY_G0000058;gene_biotype=processed_pseudogene;gene_name=TOMM22P2;gene_sources=liftoff;ID=HG003_chrY_G0000058;Name=TOMM22P2
HG003_chrY	CAT	transcript	2459252	2459488	1000	+	.	source_transcript=ENST00000430735.1;source_transcript_name=TOMM22P2-201;source_gene=ENSG00000232195.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232195.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000430735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430735.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TOMM22P2;alternative_source_transcripts=ENST00000430735.1,ENST00000430735.1;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000058;Parent=HG003_chrY_G0000058;transcript_name=HG003_chrY_T0000304;gene_name=TOMM22P2;ID=HG003_chrY_T0000304;Name=TOMM22P2
HG003_chrY	CAT	exon	2459252	2459488	.	+	.	source_transcript=ENST00000430735.1;source_transcript_name=TOMM22P2-201;source_gene=ENSG00000232195.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232195.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000430735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430735.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TOMM22P2;alternative_source_transcripts=ENST00000430735.1,ENST00000430735.1;transcript_id=HG003_chrY_T0000304;gene_id=HG003_chrY_G0000058;Parent=HG003_chrY_T0000304;transcript_name=HG003_chrY_T0000304;gene_name=TOMM22P2;ID=exon:HG003_chrY_T0000304:0;Name=TOMM22P2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2459462	2472121	.	-	.	source_gene_common_name=ENSG00000286130;source_gene=ENSG00000286130.1;alternative_source_transcripts=ENST00000651710.1,ENST00000651710.1;gene_id=HG003_chrY_G0000059;gene_biotype=lncRNA;gene_name=ENSG00000286130;gene_sources=liftoff;ID=HG003_chrY_G0000059;Name=ENSG00000286130
HG003_chrY	CAT	transcript	2459462	2472121	1000	-	.	source_transcript=ENST00000651710.1;source_transcript_name=ENST00000651710;source_gene=ENSG00000286130.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286130.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651710.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286130;alternative_source_transcripts=ENST00000651710.1,ENST00000651710.1;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000059;Parent=HG003_chrY_G0000059;transcript_name=HG003_chrY_T0000305;gene_name=ENSG00000286130;ID=HG003_chrY_T0000305;Name=ENSG00000286130
HG003_chrY	CAT	exon	2459462	2460005	.	-	.	source_transcript=ENST00000651710.1;source_transcript_name=ENST00000651710;source_gene=ENSG00000286130.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286130.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286130;alternative_source_transcripts=ENST00000651710.1,ENST00000651710.1;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000059;Parent=HG003_chrY_T0000305;transcript_name=HG003_chrY_T0000305;gene_name=ENSG00000286130;ID=exon:HG003_chrY_T0000305:0;Name=ENSG00000286130;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2460006	2460795	.	-	.	source_transcript=ENST00000651710.1;source_transcript_name=ENST00000651710;source_gene=ENSG00000286130.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286130.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286130;alternative_source_transcripts=ENST00000651710.1,ENST00000651710.1;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000059;Parent=HG003_chrY_T0000305;transcript_name=HG003_chrY_T0000305;gene_name=ENSG00000286130;ID=intron:HG003_chrY_T0000305:0;Name=ENSG00000286130;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2460796	2461021	.	-	.	source_transcript=ENST00000651710.1;source_transcript_name=ENST00000651710;source_gene=ENSG00000286130.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286130.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286130;alternative_source_transcripts=ENST00000651710.1,ENST00000651710.1;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000059;Parent=HG003_chrY_T0000305;transcript_name=HG003_chrY_T0000305;gene_name=ENSG00000286130;ID=exon:HG003_chrY_T0000305:1;Name=ENSG00000286130;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2461022	2471740	.	-	.	source_transcript=ENST00000651710.1;source_transcript_name=ENST00000651710;source_gene=ENSG00000286130.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286130.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286130;alternative_source_transcripts=ENST00000651710.1,ENST00000651710.1;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000059;Parent=HG003_chrY_T0000305;transcript_name=HG003_chrY_T0000305;gene_name=ENSG00000286130;ID=intron:HG003_chrY_T0000305:1;Name=ENSG00000286130;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2471741	2472121	.	-	.	source_transcript=ENST00000651710.1;source_transcript_name=ENST00000651710;source_gene=ENSG00000286130.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286130.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651710.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286130;alternative_source_transcripts=ENST00000651710.1,ENST00000651710.1;transcript_id=HG003_chrY_T0000305;gene_id=HG003_chrY_G0000059;Parent=HG003_chrY_T0000305;transcript_name=HG003_chrY_T0000305;gene_name=ENSG00000286130;ID=exon:HG003_chrY_T0000305:2;Name=ENSG00000286130;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2472872	2563620	.	+	.	source_gene_common_name=RPS4Y1;source_gene=ENSG00000129824.16;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;gene_id=HG003_chrY_G0000060;gene_biotype=protein_coding;gene_name=RPS4Y1;gene_sources=liftoff;ID=HG003_chrY_G0000060;Name=RPS4Y1
HG003_chrY	CAT	transcript	2472872	2498539	100	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_G0000060;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=HG003_chrY_T0000306;Name=RPS4Y1
HG003_chrY	CAT	exon	2472872	2472897	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000306:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2472895	2472897	.	+	0	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000306:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2472895	2472897	.	+	0	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=start_codon:HG003_chrY_T0000306;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2472898	2473434	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000306:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2473435	2473512	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000306:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2473435	2473512	.	+	0	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000306:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2473513	2475346	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000306:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2475347	2475527	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000306:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2475347	2475527	.	+	0	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000306:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2475528	2476915	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000306:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2476916	2477013	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000306:3;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2476916	2477013	.	+	2	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000306:3;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2477014	2485870	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000306:3;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2485871	2486042	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000306:4;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2485871	2486042	.	+	0	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000306:4;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2486043	2496358	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000306:4;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2496359	2496516	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000306:5;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2496359	2496516	.	+	2	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000306:5;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2496517	2498063	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000306:5;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2498064	2498539	.	+	.	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000306:6;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2498064	2498165	.	+	0	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000306:6;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2498163	2498165	.	+	0	source_transcript=ENST00000250784.13;source_transcript_name=RPS4Y1-201;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250784.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000250784.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000250784.13,ENST00000250784.13;transcript_id=HG003_chrY_T0000306;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000306;transcript_name=HG003_chrY_T0000306;gene_name=RPS4Y1;ID=stop_codon:HG003_chrY_T0000306;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2473190	2498133	100	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_G0000060;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=HG003_chrY_T0000307;Name=RPS4Y1
HG003_chrY	CAT	exon	2473190	2473243	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000307:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2473214	2473243	.	+	0	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000307:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2473214	2473216	.	+	0	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=start_codon:HG003_chrY_T0000307;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2473244	2473434	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000307:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2473435	2473512	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000307:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2473435	2473512	.	+	0	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000307:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2473513	2475346	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000307:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2475347	2475527	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000307:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2475347	2475527	.	+	0	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000307:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2475528	2476915	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000307:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2476916	2477013	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000307:3;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2476916	2477013	.	+	2	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000307:3;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2477014	2485870	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000307:3;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2485871	2486042	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000307:4;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2485871	2486042	.	+	0	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000307:4;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2486043	2496358	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000307:4;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2496359	2496516	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000307:5;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2496359	2496516	.	+	2	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000307:5;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2496517	2498063	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000307:5;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2498064	2498133	.	+	.	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000307:6;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2498064	2498133	.	+	0	source_transcript=ENST00000430575.1;source_transcript_name=RPS4Y1-202;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000430575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430575.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000430575.1,ENST00000430575.1;transcript_id=HG003_chrY_T0000307;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000307;transcript_name=HG003_chrY_T0000307;gene_name=RPS4Y1;ID=CDS:HG003_chrY_T0000307:6;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2485367	2498227	1000	+	.	source_transcript=ENST00000477725.1;source_transcript_name=RPS4Y1-203;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477725.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000477725.1,ENST00000477725.1;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_G0000060;transcript_name=HG003_chrY_T0000308;gene_name=RPS4Y1;ID=HG003_chrY_T0000308;Name=RPS4Y1
HG003_chrY	CAT	exon	2485367	2486042	.	+	.	source_transcript=ENST00000477725.1;source_transcript_name=RPS4Y1-203;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477725.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000477725.1,ENST00000477725.1;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000308;transcript_name=HG003_chrY_T0000308;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000308:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2486043	2496358	.	+	.	source_transcript=ENST00000477725.1;source_transcript_name=RPS4Y1-203;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477725.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000477725.1,ENST00000477725.1;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000308;transcript_name=HG003_chrY_T0000308;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000308:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2496359	2496516	.	+	.	source_transcript=ENST00000477725.1;source_transcript_name=RPS4Y1-203;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477725.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000477725.1,ENST00000477725.1;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000308;transcript_name=HG003_chrY_T0000308;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000308:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2496517	2498063	.	+	.	source_transcript=ENST00000477725.1;source_transcript_name=RPS4Y1-203;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477725.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000477725.1,ENST00000477725.1;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000308;transcript_name=HG003_chrY_T0000308;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000308:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2498064	2498227	.	+	.	source_transcript=ENST00000477725.1;source_transcript_name=RPS4Y1-203;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477725.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000477725.1,ENST00000477725.1;transcript_id=HG003_chrY_T0000308;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000308;transcript_name=HG003_chrY_T0000308;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000308:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2486001	2563620	1000	+	.	source_transcript=ENST00000515575.1;source_transcript_name=RPS4Y1-204;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000515575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000515575.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000515575.1,ENST00000515575.1;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_G0000060;transcript_name=HG003_chrY_T0000309;gene_name=RPS4Y1;ID=HG003_chrY_T0000309;Name=RPS4Y1
HG003_chrY	CAT	exon	2486001	2486042	.	+	.	source_transcript=ENST00000515575.1;source_transcript_name=RPS4Y1-204;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000515575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000515575.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000515575.1,ENST00000515575.1;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000309;transcript_name=HG003_chrY_T0000309;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000309:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2486043	2560484	.	+	.	source_transcript=ENST00000515575.1;source_transcript_name=RPS4Y1-204;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000515575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000515575.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000515575.1,ENST00000515575.1;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000309;transcript_name=HG003_chrY_T0000309;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000309:0;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2560485	2560606	.	+	.	source_transcript=ENST00000515575.1;source_transcript_name=RPS4Y1-204;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000515575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000515575.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000515575.1,ENST00000515575.1;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000309;transcript_name=HG003_chrY_T0000309;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000309:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2560607	2563330	.	+	.	source_transcript=ENST00000515575.1;source_transcript_name=RPS4Y1-204;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000515575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000515575.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000515575.1,ENST00000515575.1;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000309;transcript_name=HG003_chrY_T0000309;gene_name=RPS4Y1;ID=intron:HG003_chrY_T0000309:1;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2563331	2563620	.	+	.	source_transcript=ENST00000515575.1;source_transcript_name=RPS4Y1-204;source_gene=ENSG00000129824.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129824.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000515575.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000515575.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y1;alternative_source_transcripts=ENST00000515575.1,ENST00000515575.1;transcript_id=HG003_chrY_T0000309;gene_id=HG003_chrY_G0000060;Parent=HG003_chrY_T0000309;transcript_name=HG003_chrY_T0000309;gene_name=RPS4Y1;ID=exon:HG003_chrY_T0000309:2;Name=RPS4Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2512955	2514924	.	-	.	source_gene_common_name=HSFY3P;source_gene=ENSG00000227289.3;gene_id=HG003_chrY_G0000061;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=HSFY3P;gene_sources=liftoff;ID=HG003_chrY_G0000061;Name=HSFY3P
HG003_chrY	CAT	transcript	2512955	2514924	1000	-	.	source_transcript=ENST00000444242.1;source_transcript_name=HSFY3P-201;source_gene=ENSG00000227289.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227289.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444242.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY3P;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000061;Parent=HG003_chrY_G0000061;transcript_name=HG003_chrY_T0000310;gene_name=HSFY3P;ID=HG003_chrY_T0000310;Name=HSFY3P
HG003_chrY	CAT	exon	2512955	2513633	.	-	.	source_transcript=ENST00000444242.1;source_transcript_name=HSFY3P-201;source_gene=ENSG00000227289.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227289.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY3P;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000061;Parent=HG003_chrY_T0000310;transcript_name=HG003_chrY_T0000310;gene_name=HSFY3P;ID=exon:HG003_chrY_T0000310:0;Name=HSFY3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2513634	2514412	.	-	.	source_transcript=ENST00000444242.1;source_transcript_name=HSFY3P-201;source_gene=ENSG00000227289.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227289.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY3P;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000061;Parent=HG003_chrY_T0000310;transcript_name=HG003_chrY_T0000310;gene_name=HSFY3P;ID=intron:HG003_chrY_T0000310:0;Name=HSFY3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2514413	2514924	.	-	.	source_transcript=ENST00000444242.1;source_transcript_name=HSFY3P-201;source_gene=ENSG00000227289.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227289.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY3P;transcript_id=HG003_chrY_T0000310;gene_id=HG003_chrY_G0000061;Parent=HG003_chrY_T0000310;transcript_name=HG003_chrY_T0000310;gene_name=HSFY3P;ID=exon:HG003_chrY_T0000310:1;Name=HSFY3P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2514382	2521823	.	-	.	source_gene_common_name=ENSG00000290841;source_gene=ENSG00000290841.1;gene_id=HG003_chrY_G0000062;gene_biotype=lncRNA;gene_name=ENSG00000290841;gene_sources=liftoff;ID=HG003_chrY_G0000062;Name=ENSG00000290841
HG003_chrY	CAT	transcript	2514382	2521823	1000	-	.	source_transcript=ENST00000652562.1;source_transcript_name=ENST00000652562;source_gene=ENSG00000290841.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290841.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652562.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290841;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_G0000062;transcript_name=HG003_chrY_T0000311;gene_name=ENSG00000290841;ID=HG003_chrY_T0000311;Name=ENSG00000290841
HG003_chrY	CAT	exon	2514382	2514679	.	-	.	source_transcript=ENST00000652562.1;source_transcript_name=ENST00000652562;source_gene=ENSG00000290841.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290841.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652562.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290841;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000311;transcript_name=HG003_chrY_T0000311;gene_name=ENSG00000290841;ID=exon:HG003_chrY_T0000311:0;Name=ENSG00000290841;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2514680	2518414	.	-	.	source_transcript=ENST00000652562.1;source_transcript_name=ENST00000652562;source_gene=ENSG00000290841.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290841.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652562.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290841;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000311;transcript_name=HG003_chrY_T0000311;gene_name=ENSG00000290841;ID=intron:HG003_chrY_T0000311:0;Name=ENSG00000290841;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2518415	2518515	.	-	.	source_transcript=ENST00000652562.1;source_transcript_name=ENST00000652562;source_gene=ENSG00000290841.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290841.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652562.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290841;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000311;transcript_name=HG003_chrY_T0000311;gene_name=ENSG00000290841;ID=exon:HG003_chrY_T0000311:1;Name=ENSG00000290841;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2518516	2519716	.	-	.	source_transcript=ENST00000652562.1;source_transcript_name=ENST00000652562;source_gene=ENSG00000290841.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290841.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652562.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290841;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000311;transcript_name=HG003_chrY_T0000311;gene_name=ENSG00000290841;ID=intron:HG003_chrY_T0000311:1;Name=ENSG00000290841;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2519717	2519834	.	-	.	source_transcript=ENST00000652562.1;source_transcript_name=ENST00000652562;source_gene=ENSG00000290841.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290841.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652562.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290841;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000311;transcript_name=HG003_chrY_T0000311;gene_name=ENSG00000290841;ID=exon:HG003_chrY_T0000311:2;Name=ENSG00000290841;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2519835	2521693	.	-	.	source_transcript=ENST00000652562.1;source_transcript_name=ENST00000652562;source_gene=ENSG00000290841.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290841.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652562.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290841;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000311;transcript_name=HG003_chrY_T0000311;gene_name=ENSG00000290841;ID=intron:HG003_chrY_T0000311:2;Name=ENSG00000290841;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2521694	2521823	.	-	.	source_transcript=ENST00000652562.1;source_transcript_name=ENST00000652562;source_gene=ENSG00000290841.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290841.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652562.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290841;transcript_id=HG003_chrY_T0000311;gene_id=HG003_chrY_G0000062;Parent=HG003_chrY_T0000311;transcript_name=HG003_chrY_T0000311;gene_name=ENSG00000290841;ID=exon:HG003_chrY_T0000311:3;Name=ENSG00000290841;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2560622	2562740	.	-	.	source_gene_common_name=NAP1L1P2;source_gene=ENSG00000229163.2;alternative_source_transcripts=ENST00000414182.2,ENST00000414182.2;gene_id=HG003_chrY_G0000063;gene_biotype=processed_pseudogene;gene_name=NAP1L1P2;gene_sources=liftoff;ID=HG003_chrY_G0000063;Name=NAP1L1P2
HG003_chrY	CAT	transcript	2560622	2562740	1000	-	.	source_transcript=ENST00000414182.2;source_transcript_name=NAP1L1P2-201;source_gene=ENSG00000229163.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229163.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000414182.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000414182.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NAP1L1P2;alternative_source_transcripts=ENST00000414182.2,ENST00000414182.2;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000063;Parent=HG003_chrY_G0000063;transcript_name=HG003_chrY_T0000312;gene_name=NAP1L1P2;ID=HG003_chrY_T0000312;Name=NAP1L1P2
HG003_chrY	CAT	exon	2560622	2560663	.	-	.	source_transcript=ENST00000414182.2;source_transcript_name=NAP1L1P2-201;source_gene=ENSG00000229163.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229163.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000414182.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000414182.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NAP1L1P2;alternative_source_transcripts=ENST00000414182.2,ENST00000414182.2;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000063;Parent=HG003_chrY_T0000312;transcript_name=HG003_chrY_T0000312;gene_name=NAP1L1P2;ID=exon:HG003_chrY_T0000312:0;Name=NAP1L1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2560664	2560990	.	-	.	source_transcript=ENST00000414182.2;source_transcript_name=NAP1L1P2-201;source_gene=ENSG00000229163.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229163.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000414182.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000414182.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NAP1L1P2;alternative_source_transcripts=ENST00000414182.2,ENST00000414182.2;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000063;Parent=HG003_chrY_T0000312;transcript_name=HG003_chrY_T0000312;gene_name=NAP1L1P2;ID=intron:HG003_chrY_T0000312:0;Name=NAP1L1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2560991	2561987	.	-	.	source_transcript=ENST00000414182.2;source_transcript_name=NAP1L1P2-201;source_gene=ENSG00000229163.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229163.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000414182.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000414182.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NAP1L1P2;alternative_source_transcripts=ENST00000414182.2,ENST00000414182.2;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000063;Parent=HG003_chrY_T0000312;transcript_name=HG003_chrY_T0000312;gene_name=NAP1L1P2;ID=exon:HG003_chrY_T0000312:1;Name=NAP1L1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2561988	2562690	.	-	.	source_transcript=ENST00000414182.2;source_transcript_name=NAP1L1P2-201;source_gene=ENSG00000229163.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229163.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000414182.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000414182.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NAP1L1P2;alternative_source_transcripts=ENST00000414182.2,ENST00000414182.2;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000063;Parent=HG003_chrY_T0000312;transcript_name=HG003_chrY_T0000312;gene_name=NAP1L1P2;ID=intron:HG003_chrY_T0000312:1;Name=NAP1L1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2562691	2562740	.	-	.	source_transcript=ENST00000414182.2;source_transcript_name=NAP1L1P2-201;source_gene=ENSG00000229163.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229163.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000414182.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000414182.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NAP1L1P2;alternative_source_transcripts=ENST00000414182.2,ENST00000414182.2;transcript_id=HG003_chrY_T0000312;gene_id=HG003_chrY_G0000063;Parent=HG003_chrY_T0000312;transcript_name=HG003_chrY_T0000312;gene_name=NAP1L1P2;ID=exon:HG003_chrY_T0000312:2;Name=NAP1L1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2566026	2566391	.	-	.	source_gene_common_name=ENSG00000278847;source_gene=ENSG00000278847.1;alternative_source_transcripts=ENST00000611750.1,ENST00000611750.1;gene_id=HG003_chrY_G0000064;gene_biotype=lncRNA;gene_name=ENSG00000278847;gene_sources=liftoff;ID=HG003_chrY_G0000064;Name=ENSG00000278847
HG003_chrY	CAT	transcript	2566026	2566391	1000	-	.	source_transcript=ENST00000611750.1;source_transcript_name=ENST00000611750;source_gene=ENSG00000278847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000278847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000611750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000611750.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278847;alternative_source_transcripts=ENST00000611750.1,ENST00000611750.1;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000064;Parent=HG003_chrY_G0000064;transcript_name=HG003_chrY_T0000313;gene_name=ENSG00000278847;ID=HG003_chrY_T0000313;Name=ENSG00000278847
HG003_chrY	CAT	exon	2566026	2566391	.	-	.	source_transcript=ENST00000611750.1;source_transcript_name=ENST00000611750;source_gene=ENSG00000278847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000278847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000611750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000611750.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278847;alternative_source_transcripts=ENST00000611750.1,ENST00000611750.1;transcript_id=HG003_chrY_T0000313;gene_id=HG003_chrY_G0000064;Parent=HG003_chrY_T0000313;transcript_name=HG003_chrY_T0000313;gene_name=ENSG00000278847;ID=exon:HG003_chrY_T0000313:0;Name=ENSG00000278847;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2566901	2614104	.	+	.	source_gene_common_name=ZFY;source_gene=ENSG00000067646.12;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;gene_id=HG003_chrY_G0000065;gene_biotype=protein_coding;gene_name=ZFY;gene_sources=liftoff;ID=HG003_chrY_G0000065;Name=ZFY
HG003_chrY	CAT	transcript	2566901	2614104	100	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_G0000065;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=HG003_chrY_T0000314;Name=ZFY
HG003_chrY	CAT	exon	2566901	2567066	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=exon:HG003_chrY_T0000314:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567067	2585508	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=intron:HG003_chrY_T0000314:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2585509	2585597	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=exon:HG003_chrY_T0000314:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2585537	2585597	.	+	0	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=CDS:HG003_chrY_T0000314:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2585537	2585539	.	+	0	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000314;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2585598	2592672	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=intron:HG003_chrY_T0000314:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=exon:HG003_chrY_T0000314:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592673	2593245	.	+	2	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=CDS:HG003_chrY_T0000314:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=intron:HG003_chrY_T0000314:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=exon:HG003_chrY_T0000314:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=CDS:HG003_chrY_T0000314:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=intron:HG003_chrY_T0000314:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=exon:HG003_chrY_T0000314:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=CDS:HG003_chrY_T0000314:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2608268	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=intron:HG003_chrY_T0000314:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2608269	2608421	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=exon:HG003_chrY_T0000314:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2608269	2608421	.	+	2	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=CDS:HG003_chrY_T0000314:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2608422	2609537	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=intron:HG003_chrY_T0000314:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=exon:HG003_chrY_T0000314:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=CDS:HG003_chrY_T0000314:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=intron:HG003_chrY_T0000314:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=exon:HG003_chrY_T0000314:7;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=CDS:HG003_chrY_T0000314:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=ENST00000383052.5;source_transcript_name=ZFY-202;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383052.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000383052.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000383052.5,ENST00000383052.5;transcript_id=HG003_chrY_T0000314;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000314;transcript_name=HG003_chrY_T0000314;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000314;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567001	2614104	100	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_G0000065;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=HG003_chrY_T0000315;Name=ZFY
HG003_chrY	CAT	exon	2567001	2567389	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=exon:HG003_chrY_T0000315:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567390	2585508	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=intron:HG003_chrY_T0000315:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2585509	2585597	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=exon:HG003_chrY_T0000315:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2585537	2585597	.	+	0	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=CDS:HG003_chrY_T0000315:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2585537	2585539	.	+	0	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000315;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2585598	2592672	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=intron:HG003_chrY_T0000315:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=exon:HG003_chrY_T0000315:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592673	2593245	.	+	2	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=CDS:HG003_chrY_T0000315:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=intron:HG003_chrY_T0000315:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=exon:HG003_chrY_T0000315:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=CDS:HG003_chrY_T0000315:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=intron:HG003_chrY_T0000315:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=exon:HG003_chrY_T0000315:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=CDS:HG003_chrY_T0000315:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2608268	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=intron:HG003_chrY_T0000315:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2608269	2608421	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=exon:HG003_chrY_T0000315:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2608269	2608421	.	+	2	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=CDS:HG003_chrY_T0000315:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2608422	2609537	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=intron:HG003_chrY_T0000315:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=exon:HG003_chrY_T0000315:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=CDS:HG003_chrY_T0000315:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=intron:HG003_chrY_T0000315:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2614104	.	+	.	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=exon:HG003_chrY_T0000315:7;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=CDS:HG003_chrY_T0000315:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=ENST00000155093.8;source_transcript_name=ZFY-201;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000155093.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000155093.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000155093.8,ENST00000155093.8;transcript_id=HG003_chrY_T0000315;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000315;transcript_name=HG003_chrY_T0000315;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000315;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567009	2611945	100	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_G0000065;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=HG003_chrY_T0000316;Name=ZFY
HG003_chrY	CAT	exon	2567009	2567066	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=exon:HG003_chrY_T0000316:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567067	2585508	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=intron:HG003_chrY_T0000316:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2585509	2585597	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=exon:HG003_chrY_T0000316:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2585537	2585597	.	+	0	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=CDS:HG003_chrY_T0000316:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2585537	2585539	.	+	0	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000316;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2585598	2606693	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=intron:HG003_chrY_T0000316:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=exon:HG003_chrY_T0000316:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=CDS:HG003_chrY_T0000316:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=intron:HG003_chrY_T0000316:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=exon:HG003_chrY_T0000316:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=CDS:HG003_chrY_T0000316:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2608268	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=intron:HG003_chrY_T0000316:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2608269	2608421	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=exon:HG003_chrY_T0000316:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2608269	2608421	.	+	2	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=CDS:HG003_chrY_T0000316:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2608422	2609537	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=intron:HG003_chrY_T0000316:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=exon:HG003_chrY_T0000316:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=CDS:HG003_chrY_T0000316:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=intron:HG003_chrY_T0000316:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2611945	.	+	.	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=exon:HG003_chrY_T0000316:6;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=CDS:HG003_chrY_T0000316:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=ENST00000625061.3;source_transcript_name=ZFY-207;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000625061.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000625061.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000625061.3,ENST00000625061.3;transcript_id=HG003_chrY_T0000316;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000316;transcript_name=HG003_chrY_T0000316;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000316;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567120	2609651	1000	+	.	source_transcript=ENST00000469869.1;source_transcript_name=ZFY-205;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469869.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469869.1;transcript_score=299.853;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000469869.1,ENST00000469869.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_G0000065;transcript_name=HG003_chrY_T0000317;gene_name=ZFY;ID=HG003_chrY_T0000317;Name=ZFY
HG003_chrY	CAT	exon	2567120	2567389	.	+	.	source_transcript=ENST00000469869.1;source_transcript_name=ZFY-205;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469869.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469869.1;transcript_score=299.853;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000469869.1,ENST00000469869.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000317;transcript_name=HG003_chrY_T0000317;gene_name=ZFY;ID=exon:HG003_chrY_T0000317:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567390	2606693	.	+	.	source_transcript=ENST00000469869.1;source_transcript_name=ZFY-205;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469869.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469869.1;transcript_score=299.853;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000469869.1,ENST00000469869.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000317;transcript_name=HG003_chrY_T0000317;gene_name=ZFY;ID=intron:HG003_chrY_T0000317:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=ENST00000469869.1;source_transcript_name=ZFY-205;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469869.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469869.1;transcript_score=299.853;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000469869.1,ENST00000469869.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000317;transcript_name=HG003_chrY_T0000317;gene_name=ZFY;ID=exon:HG003_chrY_T0000317:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=ENST00000469869.1;source_transcript_name=ZFY-205;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469869.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469869.1;transcript_score=299.853;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000469869.1,ENST00000469869.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000317;transcript_name=HG003_chrY_T0000317;gene_name=ZFY;ID=intron:HG003_chrY_T0000317:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=ENST00000469869.1;source_transcript_name=ZFY-205;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469869.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469869.1;transcript_score=299.853;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000469869.1,ENST00000469869.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000317;transcript_name=HG003_chrY_T0000317;gene_name=ZFY;ID=exon:HG003_chrY_T0000317:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2609537	.	+	.	source_transcript=ENST00000469869.1;source_transcript_name=ZFY-205;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469869.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469869.1;transcript_score=299.853;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000469869.1,ENST00000469869.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000317;transcript_name=HG003_chrY_T0000317;gene_name=ZFY;ID=intron:HG003_chrY_T0000317:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609651	.	+	.	source_transcript=ENST00000469869.1;source_transcript_name=ZFY-205;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469869.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469869.1;transcript_score=299.853;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000469869.1,ENST00000469869.1;transcript_id=HG003_chrY_T0000317;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000317;transcript_name=HG003_chrY_T0000317;gene_name=ZFY;ID=exon:HG003_chrY_T0000317:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567125	2592885	100	+	.	source_transcript=ENST00000443793.1;source_transcript_name=ZFY-203;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000443793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443793.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000443793.1,ENST00000443793.1;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_G0000065;transcript_name=HG003_chrY_T0000318;gene_name=ZFY;ID=HG003_chrY_T0000318;Name=ZFY
HG003_chrY	CAT	exon	2567125	2567389	.	+	.	source_transcript=ENST00000443793.1;source_transcript_name=ZFY-203;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000443793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443793.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000443793.1,ENST00000443793.1;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000318;transcript_name=HG003_chrY_T0000318;gene_name=ZFY;ID=exon:HG003_chrY_T0000318:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567390	2585508	.	+	.	source_transcript=ENST00000443793.1;source_transcript_name=ZFY-203;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000443793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443793.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000443793.1,ENST00000443793.1;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000318;transcript_name=HG003_chrY_T0000318;gene_name=ZFY;ID=intron:HG003_chrY_T0000318:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2585509	2585597	.	+	.	source_transcript=ENST00000443793.1;source_transcript_name=ZFY-203;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000443793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443793.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000443793.1,ENST00000443793.1;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000318;transcript_name=HG003_chrY_T0000318;gene_name=ZFY;ID=exon:HG003_chrY_T0000318:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2585537	2585597	.	+	0	source_transcript=ENST00000443793.1;source_transcript_name=ZFY-203;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000443793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443793.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000443793.1,ENST00000443793.1;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000318;transcript_name=HG003_chrY_T0000318;gene_name=ZFY;ID=CDS:HG003_chrY_T0000318:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2585537	2585539	.	+	0	source_transcript=ENST00000443793.1;source_transcript_name=ZFY-203;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000443793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443793.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000443793.1,ENST00000443793.1;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000318;transcript_name=HG003_chrY_T0000318;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000318;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2585598	2592672	.	+	.	source_transcript=ENST00000443793.1;source_transcript_name=ZFY-203;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000443793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443793.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000443793.1,ENST00000443793.1;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000318;transcript_name=HG003_chrY_T0000318;gene_name=ZFY;ID=intron:HG003_chrY_T0000318:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2592885	.	+	.	source_transcript=ENST00000443793.1;source_transcript_name=ZFY-203;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000443793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443793.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000443793.1,ENST00000443793.1;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000318;transcript_name=HG003_chrY_T0000318;gene_name=ZFY;ID=exon:HG003_chrY_T0000318:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592673	2592885	.	+	2	source_transcript=ENST00000443793.1;source_transcript_name=ZFY-203;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000443793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443793.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000443793.1,ENST00000443793.1;transcript_id=HG003_chrY_T0000318;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000318;transcript_name=HG003_chrY_T0000318;gene_name=ZFY;ID=CDS:HG003_chrY_T0000318:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2567271	2612744	100	+	.	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_G0000065;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=HG003_chrY_T0000319;Name=ZFY
HG003_chrY	CAT	exon	2567271	2567389	.	+	.	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=exon:HG003_chrY_T0000319:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2567390	2592672	.	+	.	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=intron:HG003_chrY_T0000319:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2592673	2593245	.	+	.	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=exon:HG003_chrY_T0000319:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2592690	2593245	.	+	0	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=CDS:HG003_chrY_T0000319:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	2592690	2592692	.	+	0	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=start_codon:HG003_chrY_T0000319;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2593246	2606693	.	+	.	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=intron:HG003_chrY_T0000319:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2606694	2606843	.	+	.	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=exon:HG003_chrY_T0000319:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2606694	2606843	.	+	2	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=CDS:HG003_chrY_T0000319:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2606844	2607109	.	+	.	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=intron:HG003_chrY_T0000319:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2607110	2607253	.	+	.	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=exon:HG003_chrY_T0000319:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2607110	2607253	.	+	2	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=CDS:HG003_chrY_T0000319:2;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2607254	2609537	.	+	.	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=intron:HG003_chrY_T0000319:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2609538	2609678	.	+	.	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=exon:HG003_chrY_T0000319:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2609538	2609678	.	+	2	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=CDS:HG003_chrY_T0000319:3;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=intron:HG003_chrY_T0000319:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2612744	.	+	.	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=exon:HG003_chrY_T0000319:5;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	2610408	2611591	.	+	2	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=CDS:HG003_chrY_T0000319:4;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	2611589	2611591	.	+	0	source_transcript=ENST00000449237.4;source_transcript_name=ZFY-204;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449237.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000449237.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000449237.4,ENST00000449237.4;transcript_id=HG003_chrY_T0000319;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000319;transcript_name=HG003_chrY_T0000319;gene_name=ZFY;ID=stop_codon:HG003_chrY_T0000319;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2609417	2610948	1000	+	.	source_transcript=ENST00000478783.1;source_transcript_name=ZFY-206;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000478783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000478783.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000478783.1,ENST00000478783.1;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_G0000065;transcript_name=HG003_chrY_T0000321;gene_name=ZFY;ID=HG003_chrY_T0000321;Name=ZFY
HG003_chrY	CAT	exon	2609417	2609678	.	+	.	source_transcript=ENST00000478783.1;source_transcript_name=ZFY-206;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000478783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000478783.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000478783.1,ENST00000478783.1;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000321;transcript_name=HG003_chrY_T0000321;gene_name=ZFY;ID=exon:HG003_chrY_T0000321:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2609679	2610407	.	+	.	source_transcript=ENST00000478783.1;source_transcript_name=ZFY-206;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000478783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000478783.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000478783.1,ENST00000478783.1;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000321;transcript_name=HG003_chrY_T0000321;gene_name=ZFY;ID=intron:HG003_chrY_T0000321:0;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2610408	2610948	.	+	.	source_transcript=ENST00000478783.1;source_transcript_name=ZFY-206;source_gene=ENSG00000067646.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067646.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000478783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000478783.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY;alternative_source_transcripts=ENST00000478783.1,ENST00000478783.1;transcript_id=HG003_chrY_T0000321;gene_id=HG003_chrY_G0000065;Parent=HG003_chrY_T0000321;transcript_name=HG003_chrY_T0000321;gene_name=ZFY;ID=exon:HG003_chrY_T0000321:1;Name=ZFY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2598428	2634169	.	-	.	source_gene_common_name=ZFY-AS1;source_gene=ENSG00000233070.2;alternative_source_transcripts=ENST00000417305.2,ENST00000417305.2;gene_id=HG003_chrY_G0000066;gene_biotype=lncRNA;gene_name=ZFY-AS1;gene_sources=liftoff;ID=HG003_chrY_G0000066;Name=ZFY-AS1
HG003_chrY	CAT	transcript	2598428	2634416	1000	-	.	source_transcript=ENST00000417305.2;source_transcript_name=ZFY-AS1-201;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417305.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000417305.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000417305.2,ENST00000417305.2;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_G0000066;transcript_name=HG003_chrY_T0000320;gene_name=ZFY-AS1;ID=HG003_chrY_T0000320;Name=ZFY-AS1
HG003_chrY	CAT	exon	2598428	2598538	.	-	.	source_transcript=ENST00000417305.2;source_transcript_name=ZFY-AS1-201;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417305.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000417305.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000417305.2,ENST00000417305.2;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000320;transcript_name=HG003_chrY_T0000320;gene_name=ZFY-AS1;ID=exon:HG003_chrY_T0000320:0;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2598539	2613435	.	-	.	source_transcript=ENST00000417305.2;source_transcript_name=ZFY-AS1-201;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417305.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000417305.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000417305.2,ENST00000417305.2;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000320;transcript_name=HG003_chrY_T0000320;gene_name=ZFY-AS1;ID=intron:HG003_chrY_T0000320:0;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2613436	2613525	.	-	.	source_transcript=ENST00000417305.2;source_transcript_name=ZFY-AS1-201;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417305.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000417305.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000417305.2,ENST00000417305.2;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000320;transcript_name=HG003_chrY_T0000320;gene_name=ZFY-AS1;ID=exon:HG003_chrY_T0000320:1;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2613526	2633910	.	-	.	source_transcript=ENST00000417305.2;source_transcript_name=ZFY-AS1-201;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417305.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000417305.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000417305.2,ENST00000417305.2;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000320;transcript_name=HG003_chrY_T0000320;gene_name=ZFY-AS1;ID=intron:HG003_chrY_T0000320:1;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2633911	2634416	.	-	.	source_transcript=ENST00000417305.2;source_transcript_name=ZFY-AS1-201;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417305.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000417305.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000417305.2,ENST00000417305.2;transcript_id=HG003_chrY_T0000320;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000320;transcript_name=HG003_chrY_T0000320;gene_name=ZFY-AS1;ID=exon:HG003_chrY_T0000320:2;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2633224	2634399	1000	-	.	source_transcript=ENST00000758822.1;source_transcript_name=ZFY-AS1-203;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000758822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000758822.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000758822.1,ENST00000758822.1;transcript_id=HG003_chrY_T0000323;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_G0000066;transcript_name=HG003_chrY_T0000323;gene_name=ZFY-AS1;ID=HG003_chrY_T0000323;Name=ZFY-AS1
HG003_chrY	CAT	exon	2633224	2633521	.	-	.	source_transcript=ENST00000758822.1;source_transcript_name=ZFY-AS1-203;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000758822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000758822.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000758822.1,ENST00000758822.1;transcript_id=HG003_chrY_T0000323;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000323;transcript_name=HG003_chrY_T0000323;gene_name=ZFY-AS1;ID=exon:HG003_chrY_T0000323:0;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2633522	2633910	.	-	.	source_transcript=ENST00000758822.1;source_transcript_name=ZFY-AS1-203;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000758822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000758822.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000758822.1,ENST00000758822.1;transcript_id=HG003_chrY_T0000323;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000323;transcript_name=HG003_chrY_T0000323;gene_name=ZFY-AS1;ID=intron:HG003_chrY_T0000323:0;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2633911	2634399	.	-	.	source_transcript=ENST00000758822.1;source_transcript_name=ZFY-AS1-203;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000758822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000758822.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000758822.1,ENST00000758822.1;transcript_id=HG003_chrY_T0000323;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000323;transcript_name=HG003_chrY_T0000323;gene_name=ZFY-AS1;ID=exon:HG003_chrY_T0000323:1;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2633226	2634169	1000	-	.	source_transcript=ENST00000431145.1;source_transcript_name=ZFY-AS1-202;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000431145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431145.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000431145.1,ENST00000431145.1;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_G0000066;transcript_name=HG003_chrY_T0000324;gene_name=ZFY-AS1;ID=HG003_chrY_T0000324;Name=ZFY-AS1
HG003_chrY	CAT	exon	2633226	2633521	.	-	.	source_transcript=ENST00000431145.1;source_transcript_name=ZFY-AS1-202;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000431145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431145.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000431145.1,ENST00000431145.1;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000324;transcript_name=HG003_chrY_T0000324;gene_name=ZFY-AS1;ID=exon:HG003_chrY_T0000324:0;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2633522	2633910	.	-	.	source_transcript=ENST00000431145.1;source_transcript_name=ZFY-AS1-202;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000431145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431145.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000431145.1,ENST00000431145.1;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000324;transcript_name=HG003_chrY_T0000324;gene_name=ZFY-AS1;ID=intron:HG003_chrY_T0000324:0;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2633911	2633999	.	-	.	source_transcript=ENST00000431145.1;source_transcript_name=ZFY-AS1-202;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000431145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431145.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000431145.1,ENST00000431145.1;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000324;transcript_name=HG003_chrY_T0000324;gene_name=ZFY-AS1;ID=exon:HG003_chrY_T0000324:1;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634000	2634135	.	-	.	source_transcript=ENST00000431145.1;source_transcript_name=ZFY-AS1-202;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000431145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431145.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000431145.1,ENST00000431145.1;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000324;transcript_name=HG003_chrY_T0000324;gene_name=ZFY-AS1;ID=intron:HG003_chrY_T0000324:1;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2634136	2634169	.	-	.	source_transcript=ENST00000431145.1;source_transcript_name=ZFY-AS1-202;source_gene=ENSG00000233070.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233070.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000431145.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431145.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZFY-AS1;alternative_source_transcripts=ENST00000431145.1,ENST00000431145.1;transcript_id=HG003_chrY_T0000324;gene_id=HG003_chrY_G0000066;Parent=HG003_chrY_T0000324;transcript_name=HG003_chrY_T0000324;gene_name=ZFY-AS1;ID=exon:HG003_chrY_T0000324:2;Name=ZFY-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2626665	2626871	.	-	.	source_gene_common_name=EEF1A1P41;source_gene=ENSG00000223600.1;alternative_source_transcripts=ENST00000414667.1,ENST00000414667.1;gene_id=HG003_chrY_G0000067;gene_biotype=processed_pseudogene;gene_name=EEF1A1P41;gene_sources=liftoff;ID=HG003_chrY_G0000067;Name=EEF1A1P41
HG003_chrY	CAT	transcript	2626665	2626871	1000	-	.	source_transcript=ENST00000414667.1;source_transcript_name=EEF1A1P41-201;source_gene=ENSG00000223600.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000223600.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000414667.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414667.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EEF1A1P41;alternative_source_transcripts=ENST00000414667.1,ENST00000414667.1;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000067;Parent=HG003_chrY_G0000067;transcript_name=HG003_chrY_T0000322;gene_name=EEF1A1P41;ID=HG003_chrY_T0000322;Name=EEF1A1P41
HG003_chrY	CAT	exon	2626665	2626871	.	-	.	source_transcript=ENST00000414667.1;source_transcript_name=EEF1A1P41-201;source_gene=ENSG00000223600.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000223600.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000414667.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414667.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EEF1A1P41;alternative_source_transcripts=ENST00000414667.1,ENST00000414667.1;transcript_id=HG003_chrY_T0000322;gene_id=HG003_chrY_G0000067;Parent=HG003_chrY_T0000322;transcript_name=HG003_chrY_T0000322;gene_name=EEF1A1P41;ID=exon:HG003_chrY_T0000322:0;Name=EEF1A1P41;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2634485	2832089	.	+	.	source_gene_common_name=LINC00278;source_gene=ENSG00000231535.9;alternative_source_transcripts=ENST00000654222.1,ENST00000654222.1;gene_id=HG003_chrY_G0000068;gene_biotype=lncRNA;gene_name=LINC00278;gene_sources=liftoff;ID=HG003_chrY_G0000068;Name=LINC00278
HG003_chrY	CAT	transcript	2634485	2635624	1000	+	.	source_transcript=ENST00000654222.1;source_transcript_name=LINC00278-206;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000654222.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000654222.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000654222.1,ENST00000654222.1;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000325;gene_name=LINC00278;ID=HG003_chrY_T0000325;Name=LINC00278
HG003_chrY	CAT	exon	2634485	2635624	.	+	.	source_transcript=ENST00000654222.1;source_transcript_name=LINC00278-206;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000654222.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000654222.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000654222.1,ENST00000654222.1;transcript_id=HG003_chrY_T0000325;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000325;transcript_name=HG003_chrY_T0000325;gene_name=LINC00278;ID=exon:HG003_chrY_T0000325:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634485	2752199	1000	+	.	source_transcript=ENST00000655607.2;source_transcript_name=LINC00278-207;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000655607.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000655607.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000655607.2,ENST00000655607.2;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000326;gene_name=LINC00278;ID=HG003_chrY_T0000326;Name=LINC00278
HG003_chrY	CAT	exon	2634485	2634815	.	+	.	source_transcript=ENST00000655607.2;source_transcript_name=LINC00278-207;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000655607.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000655607.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000655607.2,ENST00000655607.2;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000326;transcript_name=HG003_chrY_T0000326;gene_name=LINC00278;ID=exon:HG003_chrY_T0000326:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2690246	.	+	.	source_transcript=ENST00000655607.2;source_transcript_name=LINC00278-207;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000655607.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000655607.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000655607.2,ENST00000655607.2;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000326;transcript_name=HG003_chrY_T0000326;gene_name=LINC00278;ID=intron:HG003_chrY_T0000326:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2690247	2690374	.	+	.	source_transcript=ENST00000655607.2;source_transcript_name=LINC00278-207;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000655607.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000655607.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000655607.2,ENST00000655607.2;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000326;transcript_name=HG003_chrY_T0000326;gene_name=LINC00278;ID=exon:HG003_chrY_T0000326:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2690375	2710867	.	+	.	source_transcript=ENST00000655607.2;source_transcript_name=LINC00278-207;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000655607.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000655607.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000655607.2,ENST00000655607.2;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000326;transcript_name=HG003_chrY_T0000326;gene_name=LINC00278;ID=intron:HG003_chrY_T0000326:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2710868	2710925	.	+	.	source_transcript=ENST00000655607.2;source_transcript_name=LINC00278-207;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000655607.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000655607.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000655607.2,ENST00000655607.2;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000326;transcript_name=HG003_chrY_T0000326;gene_name=LINC00278;ID=exon:HG003_chrY_T0000326:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2710926	2728583	.	+	.	source_transcript=ENST00000655607.2;source_transcript_name=LINC00278-207;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000655607.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000655607.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000655607.2,ENST00000655607.2;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000326;transcript_name=HG003_chrY_T0000326;gene_name=LINC00278;ID=intron:HG003_chrY_T0000326:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728584	2728642	.	+	.	source_transcript=ENST00000655607.2;source_transcript_name=LINC00278-207;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000655607.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000655607.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000655607.2,ENST00000655607.2;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000326;transcript_name=HG003_chrY_T0000326;gene_name=LINC00278;ID=exon:HG003_chrY_T0000326:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2728643	2742868	.	+	.	source_transcript=ENST00000655607.2;source_transcript_name=LINC00278-207;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000655607.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000655607.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000655607.2,ENST00000655607.2;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000326;transcript_name=HG003_chrY_T0000326;gene_name=LINC00278;ID=intron:HG003_chrY_T0000326:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2742869	2742934	.	+	.	source_transcript=ENST00000655607.2;source_transcript_name=LINC00278-207;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000655607.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000655607.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000655607.2,ENST00000655607.2;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000326;transcript_name=HG003_chrY_T0000326;gene_name=LINC00278;ID=exon:HG003_chrY_T0000326:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2742935	2752015	.	+	.	source_transcript=ENST00000655607.2;source_transcript_name=LINC00278-207;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000655607.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000655607.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000655607.2,ENST00000655607.2;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000326;transcript_name=HG003_chrY_T0000326;gene_name=LINC00278;ID=intron:HG003_chrY_T0000326:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2752016	2752199	.	+	.	source_transcript=ENST00000655607.2;source_transcript_name=LINC00278-207;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000655607.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000655607.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000655607.2,ENST00000655607.2;transcript_id=HG003_chrY_T0000326;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000326;transcript_name=HG003_chrY_T0000326;gene_name=LINC00278;ID=exon:HG003_chrY_T0000326:5;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634485	2832089	1000	+	.	source_transcript=ENST00000665487.1;source_transcript_name=LINC00278-208;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000665487.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000665487.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000665487.1,ENST00000665487.1;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000327;gene_name=LINC00278;ID=HG003_chrY_T0000327;Name=LINC00278
HG003_chrY	CAT	exon	2634485	2634815	.	+	.	source_transcript=ENST00000665487.1;source_transcript_name=LINC00278-208;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000665487.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000665487.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000665487.1,ENST00000665487.1;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000327;transcript_name=HG003_chrY_T0000327;gene_name=LINC00278;ID=exon:HG003_chrY_T0000327:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2831079	.	+	.	source_transcript=ENST00000665487.1;source_transcript_name=LINC00278-208;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000665487.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000665487.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000665487.1,ENST00000665487.1;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000327;transcript_name=HG003_chrY_T0000327;gene_name=LINC00278;ID=intron:HG003_chrY_T0000327:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2831080	2832089	.	+	.	source_transcript=ENST00000665487.1;source_transcript_name=LINC00278-208;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000665487.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000665487.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000665487.1,ENST00000665487.1;transcript_id=HG003_chrY_T0000327;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000327;transcript_name=HG003_chrY_T0000327;gene_name=LINC00278;ID=exon:HG003_chrY_T0000327:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634492	2729407	1000	+	.	source_transcript=ENST00000444263.6;source_transcript_name=LINC00278-202;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444263.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000444263.6;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000444263.6,ENST00000444263.6;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000328;gene_name=LINC00278;ID=HG003_chrY_T0000328;Name=LINC00278
HG003_chrY	CAT	exon	2634492	2634815	.	+	.	source_transcript=ENST00000444263.6;source_transcript_name=LINC00278-202;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444263.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000444263.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000444263.6,ENST00000444263.6;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000328;transcript_name=HG003_chrY_T0000328;gene_name=LINC00278;ID=exon:HG003_chrY_T0000328:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2710867	.	+	.	source_transcript=ENST00000444263.6;source_transcript_name=LINC00278-202;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444263.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000444263.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000444263.6,ENST00000444263.6;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000328;transcript_name=HG003_chrY_T0000328;gene_name=LINC00278;ID=intron:HG003_chrY_T0000328:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2710868	2710925	.	+	.	source_transcript=ENST00000444263.6;source_transcript_name=LINC00278-202;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444263.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000444263.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000444263.6,ENST00000444263.6;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000328;transcript_name=HG003_chrY_T0000328;gene_name=LINC00278;ID=exon:HG003_chrY_T0000328:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2710926	2728580	.	+	.	source_transcript=ENST00000444263.6;source_transcript_name=LINC00278-202;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444263.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000444263.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000444263.6,ENST00000444263.6;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000328;transcript_name=HG003_chrY_T0000328;gene_name=LINC00278;ID=intron:HG003_chrY_T0000328:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728581	2729407	.	+	.	source_transcript=ENST00000444263.6;source_transcript_name=LINC00278-202;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444263.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000444263.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000444263.6,ENST00000444263.6;transcript_id=HG003_chrY_T0000328;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000328;transcript_name=HG003_chrY_T0000328;gene_name=LINC00278;ID=exon:HG003_chrY_T0000328:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634492	2832089	1000	+	.	source_transcript=ENST00000651090.1;source_transcript_name=LINC00278-203;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651090.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000651090.1,ENST00000651090.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000329;gene_name=LINC00278;ID=HG003_chrY_T0000329;Name=LINC00278
HG003_chrY	CAT	exon	2634492	2634815	.	+	.	source_transcript=ENST00000651090.1;source_transcript_name=LINC00278-203;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651090.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000651090.1,ENST00000651090.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000329;transcript_name=HG003_chrY_T0000329;gene_name=LINC00278;ID=exon:HG003_chrY_T0000329:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2690246	.	+	.	source_transcript=ENST00000651090.1;source_transcript_name=LINC00278-203;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651090.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000651090.1,ENST00000651090.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000329;transcript_name=HG003_chrY_T0000329;gene_name=LINC00278;ID=intron:HG003_chrY_T0000329:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2690247	2690374	.	+	.	source_transcript=ENST00000651090.1;source_transcript_name=LINC00278-203;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651090.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000651090.1,ENST00000651090.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000329;transcript_name=HG003_chrY_T0000329;gene_name=LINC00278;ID=exon:HG003_chrY_T0000329:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2690375	2710867	.	+	.	source_transcript=ENST00000651090.1;source_transcript_name=LINC00278-203;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651090.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000651090.1,ENST00000651090.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000329;transcript_name=HG003_chrY_T0000329;gene_name=LINC00278;ID=intron:HG003_chrY_T0000329:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2710868	2710925	.	+	.	source_transcript=ENST00000651090.1;source_transcript_name=LINC00278-203;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651090.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000651090.1,ENST00000651090.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000329;transcript_name=HG003_chrY_T0000329;gene_name=LINC00278;ID=exon:HG003_chrY_T0000329:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2710926	2728580	.	+	.	source_transcript=ENST00000651090.1;source_transcript_name=LINC00278-203;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651090.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000651090.1,ENST00000651090.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000329;transcript_name=HG003_chrY_T0000329;gene_name=LINC00278;ID=intron:HG003_chrY_T0000329:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728581	2728642	.	+	.	source_transcript=ENST00000651090.1;source_transcript_name=LINC00278-203;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651090.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000651090.1,ENST00000651090.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000329;transcript_name=HG003_chrY_T0000329;gene_name=LINC00278;ID=exon:HG003_chrY_T0000329:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2728643	2831079	.	+	.	source_transcript=ENST00000651090.1;source_transcript_name=LINC00278-203;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651090.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000651090.1,ENST00000651090.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000329;transcript_name=HG003_chrY_T0000329;gene_name=LINC00278;ID=intron:HG003_chrY_T0000329:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2831080	2832089	.	+	.	source_transcript=ENST00000651090.1;source_transcript_name=LINC00278-203;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651090.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000651090.1,ENST00000651090.1;transcript_id=HG003_chrY_T0000329;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000329;transcript_name=HG003_chrY_T0000329;gene_name=LINC00278;ID=exon:HG003_chrY_T0000329:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634492	2752285	1000	+	.	source_transcript=ENST00000652068.1;source_transcript_name=LINC00278-204;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652068.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652068.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000652068.1,ENST00000652068.1;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000330;gene_name=LINC00278;ID=HG003_chrY_T0000330;Name=LINC00278
HG003_chrY	CAT	exon	2634492	2634815	.	+	.	source_transcript=ENST00000652068.1;source_transcript_name=LINC00278-204;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652068.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652068.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000652068.1,ENST00000652068.1;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000330;transcript_name=HG003_chrY_T0000330;gene_name=LINC00278;ID=exon:HG003_chrY_T0000330:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2710867	.	+	.	source_transcript=ENST00000652068.1;source_transcript_name=LINC00278-204;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652068.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652068.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000652068.1,ENST00000652068.1;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000330;transcript_name=HG003_chrY_T0000330;gene_name=LINC00278;ID=intron:HG003_chrY_T0000330:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2710868	2710925	.	+	.	source_transcript=ENST00000652068.1;source_transcript_name=LINC00278-204;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652068.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652068.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000652068.1,ENST00000652068.1;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000330;transcript_name=HG003_chrY_T0000330;gene_name=LINC00278;ID=exon:HG003_chrY_T0000330:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2710926	2728580	.	+	.	source_transcript=ENST00000652068.1;source_transcript_name=LINC00278-204;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652068.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652068.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000652068.1,ENST00000652068.1;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000330;transcript_name=HG003_chrY_T0000330;gene_name=LINC00278;ID=intron:HG003_chrY_T0000330:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728581	2728642	.	+	.	source_transcript=ENST00000652068.1;source_transcript_name=LINC00278-204;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652068.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652068.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000652068.1,ENST00000652068.1;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000330;transcript_name=HG003_chrY_T0000330;gene_name=LINC00278;ID=exon:HG003_chrY_T0000330:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2728643	2733670	.	+	.	source_transcript=ENST00000652068.1;source_transcript_name=LINC00278-204;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652068.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652068.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000652068.1,ENST00000652068.1;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000330;transcript_name=HG003_chrY_T0000330;gene_name=LINC00278;ID=intron:HG003_chrY_T0000330:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2733671	2733780	.	+	.	source_transcript=ENST00000652068.1;source_transcript_name=LINC00278-204;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652068.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652068.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000652068.1,ENST00000652068.1;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000330;transcript_name=HG003_chrY_T0000330;gene_name=LINC00278;ID=exon:HG003_chrY_T0000330:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2733781	2742868	.	+	.	source_transcript=ENST00000652068.1;source_transcript_name=LINC00278-204;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652068.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652068.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000652068.1,ENST00000652068.1;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000330;transcript_name=HG003_chrY_T0000330;gene_name=LINC00278;ID=intron:HG003_chrY_T0000330:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2742869	2742934	.	+	.	source_transcript=ENST00000652068.1;source_transcript_name=LINC00278-204;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652068.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652068.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000652068.1,ENST00000652068.1;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000330;transcript_name=HG003_chrY_T0000330;gene_name=LINC00278;ID=exon:HG003_chrY_T0000330:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2742935	2752015	.	+	.	source_transcript=ENST00000652068.1;source_transcript_name=LINC00278-204;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652068.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652068.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000652068.1,ENST00000652068.1;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000330;transcript_name=HG003_chrY_T0000330;gene_name=LINC00278;ID=intron:HG003_chrY_T0000330:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2752016	2752285	.	+	.	source_transcript=ENST00000652068.1;source_transcript_name=LINC00278-204;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652068.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652068.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000652068.1,ENST00000652068.1;transcript_id=HG003_chrY_T0000330;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000330;transcript_name=HG003_chrY_T0000330;gene_name=LINC00278;ID=exon:HG003_chrY_T0000330:5;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634492	2691834	1000	+	.	source_transcript=ENST00000685199.2;source_transcript_name=LINC00278-209;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000685199.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000685199.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000685199.2,ENST00000685199.2;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000331;gene_name=LINC00278;ID=HG003_chrY_T0000331;Name=LINC00278
HG003_chrY	CAT	exon	2634492	2634815	.	+	.	source_transcript=ENST00000685199.2;source_transcript_name=LINC00278-209;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000685199.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000685199.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000685199.2,ENST00000685199.2;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000331;transcript_name=HG003_chrY_T0000331;gene_name=LINC00278;ID=exon:HG003_chrY_T0000331:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2690246	.	+	.	source_transcript=ENST00000685199.2;source_transcript_name=LINC00278-209;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000685199.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000685199.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000685199.2,ENST00000685199.2;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000331;transcript_name=HG003_chrY_T0000331;gene_name=LINC00278;ID=intron:HG003_chrY_T0000331:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2690247	2691834	.	+	.	source_transcript=ENST00000685199.2;source_transcript_name=LINC00278-209;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000685199.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000685199.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000685199.2,ENST00000685199.2;transcript_id=HG003_chrY_T0000331;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000331;transcript_name=HG003_chrY_T0000331;gene_name=LINC00278;ID=exon:HG003_chrY_T0000331:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634497	2745443	1000	+	.	source_transcript=ENST00000803192.1;source_transcript_name=LINC00278-213;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803192.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803192.1,ENST00000803192.1;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000332;gene_name=LINC00278;ID=HG003_chrY_T0000332;Name=LINC00278
HG003_chrY	CAT	exon	2634497	2634815	.	+	.	source_transcript=ENST00000803192.1;source_transcript_name=LINC00278-213;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803192.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803192.1,ENST00000803192.1;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000332;transcript_name=HG003_chrY_T0000332;gene_name=LINC00278;ID=exon:HG003_chrY_T0000332:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2690246	.	+	.	source_transcript=ENST00000803192.1;source_transcript_name=LINC00278-213;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803192.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803192.1,ENST00000803192.1;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000332;transcript_name=HG003_chrY_T0000332;gene_name=LINC00278;ID=intron:HG003_chrY_T0000332:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2690247	2690374	.	+	.	source_transcript=ENST00000803192.1;source_transcript_name=LINC00278-213;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803192.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803192.1,ENST00000803192.1;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000332;transcript_name=HG003_chrY_T0000332;gene_name=LINC00278;ID=exon:HG003_chrY_T0000332:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2690375	2728583	.	+	.	source_transcript=ENST00000803192.1;source_transcript_name=LINC00278-213;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803192.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803192.1,ENST00000803192.1;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000332;transcript_name=HG003_chrY_T0000332;gene_name=LINC00278;ID=intron:HG003_chrY_T0000332:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728584	2728642	.	+	.	source_transcript=ENST00000803192.1;source_transcript_name=LINC00278-213;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803192.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803192.1,ENST00000803192.1;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000332;transcript_name=HG003_chrY_T0000332;gene_name=LINC00278;ID=exon:HG003_chrY_T0000332:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2728643	2742868	.	+	.	source_transcript=ENST00000803192.1;source_transcript_name=LINC00278-213;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803192.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803192.1,ENST00000803192.1;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000332;transcript_name=HG003_chrY_T0000332;gene_name=LINC00278;ID=intron:HG003_chrY_T0000332:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2742869	2742934	.	+	.	source_transcript=ENST00000803192.1;source_transcript_name=LINC00278-213;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803192.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803192.1,ENST00000803192.1;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000332;transcript_name=HG003_chrY_T0000332;gene_name=LINC00278;ID=exon:HG003_chrY_T0000332:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2742935	2745255	.	+	.	source_transcript=ENST00000803192.1;source_transcript_name=LINC00278-213;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803192.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803192.1,ENST00000803192.1;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000332;transcript_name=HG003_chrY_T0000332;gene_name=LINC00278;ID=intron:HG003_chrY_T0000332:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2745256	2745443	.	+	.	source_transcript=ENST00000803192.1;source_transcript_name=LINC00278-213;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803192.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803192.1,ENST00000803192.1;transcript_id=HG003_chrY_T0000332;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000332;transcript_name=HG003_chrY_T0000332;gene_name=LINC00278;ID=exon:HG003_chrY_T0000332:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634499	2752199	1000	+	.	source_transcript=ENST00000691894.1;source_transcript_name=LINC00278-210;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000691894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691894.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000691894.1,ENST00000691894.1;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000333;gene_name=LINC00278;ID=HG003_chrY_T0000333;Name=LINC00278
HG003_chrY	CAT	exon	2634499	2634815	.	+	.	source_transcript=ENST00000691894.1;source_transcript_name=LINC00278-210;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000691894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000691894.1,ENST00000691894.1;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000333;transcript_name=HG003_chrY_T0000333;gene_name=LINC00278;ID=exon:HG003_chrY_T0000333:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2690246	.	+	.	source_transcript=ENST00000691894.1;source_transcript_name=LINC00278-210;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000691894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000691894.1,ENST00000691894.1;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000333;transcript_name=HG003_chrY_T0000333;gene_name=LINC00278;ID=intron:HG003_chrY_T0000333:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2690247	2690374	.	+	.	source_transcript=ENST00000691894.1;source_transcript_name=LINC00278-210;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000691894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000691894.1,ENST00000691894.1;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000333;transcript_name=HG003_chrY_T0000333;gene_name=LINC00278;ID=exon:HG003_chrY_T0000333:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2690375	2710867	.	+	.	source_transcript=ENST00000691894.1;source_transcript_name=LINC00278-210;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000691894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000691894.1,ENST00000691894.1;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000333;transcript_name=HG003_chrY_T0000333;gene_name=LINC00278;ID=intron:HG003_chrY_T0000333:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2710868	2710925	.	+	.	source_transcript=ENST00000691894.1;source_transcript_name=LINC00278-210;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000691894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000691894.1,ENST00000691894.1;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000333;transcript_name=HG003_chrY_T0000333;gene_name=LINC00278;ID=exon:HG003_chrY_T0000333:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2710926	2728580	.	+	.	source_transcript=ENST00000691894.1;source_transcript_name=LINC00278-210;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000691894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000691894.1,ENST00000691894.1;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000333;transcript_name=HG003_chrY_T0000333;gene_name=LINC00278;ID=intron:HG003_chrY_T0000333:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728581	2728642	.	+	.	source_transcript=ENST00000691894.1;source_transcript_name=LINC00278-210;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000691894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000691894.1,ENST00000691894.1;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000333;transcript_name=HG003_chrY_T0000333;gene_name=LINC00278;ID=exon:HG003_chrY_T0000333:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2728643	2752015	.	+	.	source_transcript=ENST00000691894.1;source_transcript_name=LINC00278-210;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000691894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000691894.1,ENST00000691894.1;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000333;transcript_name=HG003_chrY_T0000333;gene_name=LINC00278;ID=intron:HG003_chrY_T0000333:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2752016	2752199	.	+	.	source_transcript=ENST00000691894.1;source_transcript_name=LINC00278-210;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000691894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000691894.1,ENST00000691894.1;transcript_id=HG003_chrY_T0000333;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000333;transcript_name=HG003_chrY_T0000333;gene_name=LINC00278;ID=exon:HG003_chrY_T0000333:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634499	2792436	1000	+	.	source_transcript=ENST00000803190.1;source_transcript_name=LINC00278-211;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803190.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803190.1,ENST00000803190.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000334;gene_name=LINC00278;ID=HG003_chrY_T0000334;Name=LINC00278
HG003_chrY	CAT	exon	2634499	2634815	.	+	.	source_transcript=ENST00000803190.1;source_transcript_name=LINC00278-211;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803190.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803190.1,ENST00000803190.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000334;transcript_name=HG003_chrY_T0000334;gene_name=LINC00278;ID=exon:HG003_chrY_T0000334:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2646501	.	+	.	source_transcript=ENST00000803190.1;source_transcript_name=LINC00278-211;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803190.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803190.1,ENST00000803190.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000334;transcript_name=HG003_chrY_T0000334;gene_name=LINC00278;ID=intron:HG003_chrY_T0000334:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2646502	2646684	.	+	.	source_transcript=ENST00000803190.1;source_transcript_name=LINC00278-211;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803190.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803190.1,ENST00000803190.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000334;transcript_name=HG003_chrY_T0000334;gene_name=LINC00278;ID=exon:HG003_chrY_T0000334:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2646685	2690246	.	+	.	source_transcript=ENST00000803190.1;source_transcript_name=LINC00278-211;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803190.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803190.1,ENST00000803190.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000334;transcript_name=HG003_chrY_T0000334;gene_name=LINC00278;ID=intron:HG003_chrY_T0000334:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2690247	2690374	.	+	.	source_transcript=ENST00000803190.1;source_transcript_name=LINC00278-211;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803190.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803190.1,ENST00000803190.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000334;transcript_name=HG003_chrY_T0000334;gene_name=LINC00278;ID=exon:HG003_chrY_T0000334:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2690375	2728583	.	+	.	source_transcript=ENST00000803190.1;source_transcript_name=LINC00278-211;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803190.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803190.1,ENST00000803190.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000334;transcript_name=HG003_chrY_T0000334;gene_name=LINC00278;ID=intron:HG003_chrY_T0000334:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728584	2728642	.	+	.	source_transcript=ENST00000803190.1;source_transcript_name=LINC00278-211;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803190.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803190.1,ENST00000803190.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000334;transcript_name=HG003_chrY_T0000334;gene_name=LINC00278;ID=exon:HG003_chrY_T0000334:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2728643	2792256	.	+	.	source_transcript=ENST00000803190.1;source_transcript_name=LINC00278-211;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803190.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803190.1,ENST00000803190.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000334;transcript_name=HG003_chrY_T0000334;gene_name=LINC00278;ID=intron:HG003_chrY_T0000334:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2792257	2792436	.	+	.	source_transcript=ENST00000803190.1;source_transcript_name=LINC00278-211;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803190.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803190.1,ENST00000803190.1;transcript_id=HG003_chrY_T0000334;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000334;transcript_name=HG003_chrY_T0000334;gene_name=LINC00278;ID=exon:HG003_chrY_T0000334:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634499	2729160	1000	+	.	source_transcript=ENST00000803197.1;source_transcript_name=LINC00278-218;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803197.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803197.1,ENST00000803197.1;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000335;gene_name=LINC00278;ID=HG003_chrY_T0000335;Name=LINC00278
HG003_chrY	CAT	exon	2634499	2634815	.	+	.	source_transcript=ENST00000803197.1;source_transcript_name=LINC00278-218;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803197.1,ENST00000803197.1;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000335;transcript_name=HG003_chrY_T0000335;gene_name=LINC00278;ID=exon:HG003_chrY_T0000335:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2690246	.	+	.	source_transcript=ENST00000803197.1;source_transcript_name=LINC00278-218;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803197.1,ENST00000803197.1;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000335;transcript_name=HG003_chrY_T0000335;gene_name=LINC00278;ID=intron:HG003_chrY_T0000335:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2690247	2690374	.	+	.	source_transcript=ENST00000803197.1;source_transcript_name=LINC00278-218;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803197.1,ENST00000803197.1;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000335;transcript_name=HG003_chrY_T0000335;gene_name=LINC00278;ID=exon:HG003_chrY_T0000335:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2690375	2710867	.	+	.	source_transcript=ENST00000803197.1;source_transcript_name=LINC00278-218;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803197.1,ENST00000803197.1;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000335;transcript_name=HG003_chrY_T0000335;gene_name=LINC00278;ID=intron:HG003_chrY_T0000335:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2710868	2710925	.	+	.	source_transcript=ENST00000803197.1;source_transcript_name=LINC00278-218;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803197.1,ENST00000803197.1;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000335;transcript_name=HG003_chrY_T0000335;gene_name=LINC00278;ID=exon:HG003_chrY_T0000335:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2710926	2728580	.	+	.	source_transcript=ENST00000803197.1;source_transcript_name=LINC00278-218;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803197.1,ENST00000803197.1;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000335;transcript_name=HG003_chrY_T0000335;gene_name=LINC00278;ID=intron:HG003_chrY_T0000335:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728581	2729160	.	+	.	source_transcript=ENST00000803197.1;source_transcript_name=LINC00278-218;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803197.1,ENST00000803197.1;transcript_id=HG003_chrY_T0000335;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000335;transcript_name=HG003_chrY_T0000335;gene_name=LINC00278;ID=exon:HG003_chrY_T0000335:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634504	2733858	1000	+	.	source_transcript=ENST00000425031.2;source_transcript_name=LINC00278-201;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000425031.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000425031.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000425031.2,ENST00000425031.2;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000336;gene_name=LINC00278;ID=HG003_chrY_T0000336;Name=LINC00278
HG003_chrY	CAT	exon	2634504	2634815	.	+	.	source_transcript=ENST00000425031.2;source_transcript_name=LINC00278-201;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000425031.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000425031.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000425031.2,ENST00000425031.2;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000336;transcript_name=HG003_chrY_T0000336;gene_name=LINC00278;ID=exon:HG003_chrY_T0000336:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2710867	.	+	.	source_transcript=ENST00000425031.2;source_transcript_name=LINC00278-201;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000425031.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000425031.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000425031.2,ENST00000425031.2;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000336;transcript_name=HG003_chrY_T0000336;gene_name=LINC00278;ID=intron:HG003_chrY_T0000336:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2710868	2710925	.	+	.	source_transcript=ENST00000425031.2;source_transcript_name=LINC00278-201;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000425031.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000425031.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000425031.2,ENST00000425031.2;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000336;transcript_name=HG003_chrY_T0000336;gene_name=LINC00278;ID=exon:HG003_chrY_T0000336:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2710926	2728580	.	+	.	source_transcript=ENST00000425031.2;source_transcript_name=LINC00278-201;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000425031.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000425031.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000425031.2,ENST00000425031.2;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000336;transcript_name=HG003_chrY_T0000336;gene_name=LINC00278;ID=intron:HG003_chrY_T0000336:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728581	2728642	.	+	.	source_transcript=ENST00000425031.2;source_transcript_name=LINC00278-201;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000425031.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000425031.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000425031.2,ENST00000425031.2;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000336;transcript_name=HG003_chrY_T0000336;gene_name=LINC00278;ID=exon:HG003_chrY_T0000336:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2728643	2733670	.	+	.	source_transcript=ENST00000425031.2;source_transcript_name=LINC00278-201;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000425031.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000425031.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000425031.2,ENST00000425031.2;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000336;transcript_name=HG003_chrY_T0000336;gene_name=LINC00278;ID=intron:HG003_chrY_T0000336:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2733671	2733858	.	+	.	source_transcript=ENST00000425031.2;source_transcript_name=LINC00278-201;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000425031.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000425031.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000425031.2,ENST00000425031.2;transcript_id=HG003_chrY_T0000336;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000336;transcript_name=HG003_chrY_T0000336;gene_name=LINC00278;ID=exon:HG003_chrY_T0000336:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634504	2729172	1000	+	.	source_transcript=ENST00000803196.1;source_transcript_name=LINC00278-217;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803196.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803196.1,ENST00000803196.1;transcript_id=HG003_chrY_T0000337;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000337;gene_name=LINC00278;ID=HG003_chrY_T0000337;Name=LINC00278
HG003_chrY	CAT	exon	2634504	2634815	.	+	.	source_transcript=ENST00000803196.1;source_transcript_name=LINC00278-217;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803196.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803196.1,ENST00000803196.1;transcript_id=HG003_chrY_T0000337;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000337;transcript_name=HG003_chrY_T0000337;gene_name=LINC00278;ID=exon:HG003_chrY_T0000337:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2728580	.	+	.	source_transcript=ENST00000803196.1;source_transcript_name=LINC00278-217;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803196.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803196.1,ENST00000803196.1;transcript_id=HG003_chrY_T0000337;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000337;transcript_name=HG003_chrY_T0000337;gene_name=LINC00278;ID=intron:HG003_chrY_T0000337:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728581	2729172	.	+	.	source_transcript=ENST00000803196.1;source_transcript_name=LINC00278-217;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803196.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803196.1,ENST00000803196.1;transcript_id=HG003_chrY_T0000337;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000337;transcript_name=HG003_chrY_T0000337;gene_name=LINC00278;ID=exon:HG003_chrY_T0000337:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634510	2752282	1000	+	.	source_transcript=ENST00000803191.1;source_transcript_name=LINC00278-212;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803191.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803191.1,ENST00000803191.1;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000338;gene_name=LINC00278;ID=HG003_chrY_T0000338;Name=LINC00278
HG003_chrY	CAT	exon	2634510	2634815	.	+	.	source_transcript=ENST00000803191.1;source_transcript_name=LINC00278-212;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803191.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803191.1,ENST00000803191.1;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000338;transcript_name=HG003_chrY_T0000338;gene_name=LINC00278;ID=exon:HG003_chrY_T0000338:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2690246	.	+	.	source_transcript=ENST00000803191.1;source_transcript_name=LINC00278-212;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803191.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803191.1,ENST00000803191.1;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000338;transcript_name=HG003_chrY_T0000338;gene_name=LINC00278;ID=intron:HG003_chrY_T0000338:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2690247	2690374	.	+	.	source_transcript=ENST00000803191.1;source_transcript_name=LINC00278-212;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803191.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803191.1,ENST00000803191.1;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000338;transcript_name=HG003_chrY_T0000338;gene_name=LINC00278;ID=exon:HG003_chrY_T0000338:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2690375	2728580	.	+	.	source_transcript=ENST00000803191.1;source_transcript_name=LINC00278-212;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803191.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803191.1,ENST00000803191.1;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000338;transcript_name=HG003_chrY_T0000338;gene_name=LINC00278;ID=intron:HG003_chrY_T0000338:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728581	2728642	.	+	.	source_transcript=ENST00000803191.1;source_transcript_name=LINC00278-212;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803191.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803191.1,ENST00000803191.1;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000338;transcript_name=HG003_chrY_T0000338;gene_name=LINC00278;ID=exon:HG003_chrY_T0000338:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2728643	2733670	.	+	.	source_transcript=ENST00000803191.1;source_transcript_name=LINC00278-212;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803191.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803191.1,ENST00000803191.1;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000338;transcript_name=HG003_chrY_T0000338;gene_name=LINC00278;ID=intron:HG003_chrY_T0000338:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2733671	2733780	.	+	.	source_transcript=ENST00000803191.1;source_transcript_name=LINC00278-212;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803191.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803191.1,ENST00000803191.1;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000338;transcript_name=HG003_chrY_T0000338;gene_name=LINC00278;ID=exon:HG003_chrY_T0000338:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2733781	2742868	.	+	.	source_transcript=ENST00000803191.1;source_transcript_name=LINC00278-212;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803191.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803191.1,ENST00000803191.1;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000338;transcript_name=HG003_chrY_T0000338;gene_name=LINC00278;ID=intron:HG003_chrY_T0000338:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2742869	2742934	.	+	.	source_transcript=ENST00000803191.1;source_transcript_name=LINC00278-212;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803191.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803191.1,ENST00000803191.1;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000338;transcript_name=HG003_chrY_T0000338;gene_name=LINC00278;ID=exon:HG003_chrY_T0000338:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2742935	2752015	.	+	.	source_transcript=ENST00000803191.1;source_transcript_name=LINC00278-212;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803191.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803191.1,ENST00000803191.1;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000338;transcript_name=HG003_chrY_T0000338;gene_name=LINC00278;ID=intron:HG003_chrY_T0000338:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2752016	2752282	.	+	.	source_transcript=ENST00000803191.1;source_transcript_name=LINC00278-212;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803191.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803191.1,ENST00000803191.1;transcript_id=HG003_chrY_T0000338;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000338;transcript_name=HG003_chrY_T0000338;gene_name=LINC00278;ID=exon:HG003_chrY_T0000338:5;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634510	2745443	1000	+	.	source_transcript=ENST00000803193.1;source_transcript_name=LINC00278-214;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803193.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803193.1,ENST00000803193.1;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000339;gene_name=LINC00278;ID=HG003_chrY_T0000339;Name=LINC00278
HG003_chrY	CAT	exon	2634510	2634815	.	+	.	source_transcript=ENST00000803193.1;source_transcript_name=LINC00278-214;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803193.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803193.1,ENST00000803193.1;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000339;transcript_name=HG003_chrY_T0000339;gene_name=LINC00278;ID=exon:HG003_chrY_T0000339:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2690246	.	+	.	source_transcript=ENST00000803193.1;source_transcript_name=LINC00278-214;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803193.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803193.1,ENST00000803193.1;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000339;transcript_name=HG003_chrY_T0000339;gene_name=LINC00278;ID=intron:HG003_chrY_T0000339:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2690247	2690374	.	+	.	source_transcript=ENST00000803193.1;source_transcript_name=LINC00278-214;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803193.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803193.1,ENST00000803193.1;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000339;transcript_name=HG003_chrY_T0000339;gene_name=LINC00278;ID=exon:HG003_chrY_T0000339:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2690375	2742868	.	+	.	source_transcript=ENST00000803193.1;source_transcript_name=LINC00278-214;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803193.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803193.1,ENST00000803193.1;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000339;transcript_name=HG003_chrY_T0000339;gene_name=LINC00278;ID=intron:HG003_chrY_T0000339:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2742869	2742934	.	+	.	source_transcript=ENST00000803193.1;source_transcript_name=LINC00278-214;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803193.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803193.1,ENST00000803193.1;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000339;transcript_name=HG003_chrY_T0000339;gene_name=LINC00278;ID=exon:HG003_chrY_T0000339:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2742935	2745255	.	+	.	source_transcript=ENST00000803193.1;source_transcript_name=LINC00278-214;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803193.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803193.1,ENST00000803193.1;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000339;transcript_name=HG003_chrY_T0000339;gene_name=LINC00278;ID=intron:HG003_chrY_T0000339:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2745256	2745443	.	+	.	source_transcript=ENST00000803193.1;source_transcript_name=LINC00278-214;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803193.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803193.1,ENST00000803193.1;transcript_id=HG003_chrY_T0000339;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000339;transcript_name=HG003_chrY_T0000339;gene_name=LINC00278;ID=exon:HG003_chrY_T0000339:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634510	2745443	1000	+	.	source_transcript=ENST00000803194.1;source_transcript_name=LINC00278-215;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803194.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803194.1,ENST00000803194.1;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000340;gene_name=LINC00278;ID=HG003_chrY_T0000340;Name=LINC00278
HG003_chrY	CAT	exon	2634510	2634815	.	+	.	source_transcript=ENST00000803194.1;source_transcript_name=LINC00278-215;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803194.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803194.1,ENST00000803194.1;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000340;transcript_name=HG003_chrY_T0000340;gene_name=LINC00278;ID=exon:HG003_chrY_T0000340:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2690246	.	+	.	source_transcript=ENST00000803194.1;source_transcript_name=LINC00278-215;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803194.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803194.1,ENST00000803194.1;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000340;transcript_name=HG003_chrY_T0000340;gene_name=LINC00278;ID=intron:HG003_chrY_T0000340:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2690247	2690374	.	+	.	source_transcript=ENST00000803194.1;source_transcript_name=LINC00278-215;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803194.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803194.1,ENST00000803194.1;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000340;transcript_name=HG003_chrY_T0000340;gene_name=LINC00278;ID=exon:HG003_chrY_T0000340:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2690375	2710867	.	+	.	source_transcript=ENST00000803194.1;source_transcript_name=LINC00278-215;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803194.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803194.1,ENST00000803194.1;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000340;transcript_name=HG003_chrY_T0000340;gene_name=LINC00278;ID=intron:HG003_chrY_T0000340:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2710868	2710925	.	+	.	source_transcript=ENST00000803194.1;source_transcript_name=LINC00278-215;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803194.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803194.1,ENST00000803194.1;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000340;transcript_name=HG003_chrY_T0000340;gene_name=LINC00278;ID=exon:HG003_chrY_T0000340:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2710926	2728580	.	+	.	source_transcript=ENST00000803194.1;source_transcript_name=LINC00278-215;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803194.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803194.1,ENST00000803194.1;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000340;transcript_name=HG003_chrY_T0000340;gene_name=LINC00278;ID=intron:HG003_chrY_T0000340:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728581	2728642	.	+	.	source_transcript=ENST00000803194.1;source_transcript_name=LINC00278-215;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803194.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803194.1,ENST00000803194.1;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000340;transcript_name=HG003_chrY_T0000340;gene_name=LINC00278;ID=exon:HG003_chrY_T0000340:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2728643	2742868	.	+	.	source_transcript=ENST00000803194.1;source_transcript_name=LINC00278-215;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803194.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803194.1,ENST00000803194.1;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000340;transcript_name=HG003_chrY_T0000340;gene_name=LINC00278;ID=intron:HG003_chrY_T0000340:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2742869	2742934	.	+	.	source_transcript=ENST00000803194.1;source_transcript_name=LINC00278-215;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803194.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803194.1,ENST00000803194.1;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000340;transcript_name=HG003_chrY_T0000340;gene_name=LINC00278;ID=exon:HG003_chrY_T0000340:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2742935	2745255	.	+	.	source_transcript=ENST00000803194.1;source_transcript_name=LINC00278-215;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803194.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803194.1,ENST00000803194.1;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000340;transcript_name=HG003_chrY_T0000340;gene_name=LINC00278;ID=intron:HG003_chrY_T0000340:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2745256	2745443	.	+	.	source_transcript=ENST00000803194.1;source_transcript_name=LINC00278-215;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803194.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803194.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803194.1,ENST00000803194.1;transcript_id=HG003_chrY_T0000340;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000340;transcript_name=HG003_chrY_T0000340;gene_name=LINC00278;ID=exon:HG003_chrY_T0000340:5;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634599	2741901	1000	+	.	source_transcript=ENST00000653660.1;source_transcript_name=LINC00278-205;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653660.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000653660.1,ENST00000653660.1;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000341;gene_name=LINC00278;ID=HG003_chrY_T0000341;Name=LINC00278
HG003_chrY	CAT	exon	2634599	2634815	.	+	.	source_transcript=ENST00000653660.1;source_transcript_name=LINC00278-205;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653660.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000653660.1,ENST00000653660.1;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000341;transcript_name=HG003_chrY_T0000341;gene_name=LINC00278;ID=exon:HG003_chrY_T0000341:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2690246	.	+	.	source_transcript=ENST00000653660.1;source_transcript_name=LINC00278-205;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653660.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000653660.1,ENST00000653660.1;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000341;transcript_name=HG003_chrY_T0000341;gene_name=LINC00278;ID=intron:HG003_chrY_T0000341:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2690247	2690374	.	+	.	source_transcript=ENST00000653660.1;source_transcript_name=LINC00278-205;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653660.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000653660.1,ENST00000653660.1;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000341;transcript_name=HG003_chrY_T0000341;gene_name=LINC00278;ID=exon:HG003_chrY_T0000341:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2690375	2728580	.	+	.	source_transcript=ENST00000653660.1;source_transcript_name=LINC00278-205;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653660.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000653660.1,ENST00000653660.1;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000341;transcript_name=HG003_chrY_T0000341;gene_name=LINC00278;ID=intron:HG003_chrY_T0000341:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728581	2728642	.	+	.	source_transcript=ENST00000653660.1;source_transcript_name=LINC00278-205;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653660.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000653660.1,ENST00000653660.1;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000341;transcript_name=HG003_chrY_T0000341;gene_name=LINC00278;ID=exon:HG003_chrY_T0000341:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2728643	2733670	.	+	.	source_transcript=ENST00000653660.1;source_transcript_name=LINC00278-205;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653660.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000653660.1,ENST00000653660.1;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000341;transcript_name=HG003_chrY_T0000341;gene_name=LINC00278;ID=intron:HG003_chrY_T0000341:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2733671	2733780	.	+	.	source_transcript=ENST00000653660.1;source_transcript_name=LINC00278-205;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653660.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000653660.1,ENST00000653660.1;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000341;transcript_name=HG003_chrY_T0000341;gene_name=LINC00278;ID=exon:HG003_chrY_T0000341:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2733781	2741403	.	+	.	source_transcript=ENST00000653660.1;source_transcript_name=LINC00278-205;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653660.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000653660.1,ENST00000653660.1;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000341;transcript_name=HG003_chrY_T0000341;gene_name=LINC00278;ID=intron:HG003_chrY_T0000341:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2741404	2741901	.	+	.	source_transcript=ENST00000653660.1;source_transcript_name=LINC00278-205;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653660.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000653660.1,ENST00000653660.1;transcript_id=HG003_chrY_T0000341;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000341;transcript_name=HG003_chrY_T0000341;gene_name=LINC00278;ID=exon:HG003_chrY_T0000341:4;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	2634607	2742707	1000	+	.	source_transcript=ENST00000803195.1;source_transcript_name=LINC00278-216;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803195.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803195.1,ENST00000803195.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_G0000068;transcript_name=HG003_chrY_T0000342;gene_name=LINC00278;ID=HG003_chrY_T0000342;Name=LINC00278
HG003_chrY	CAT	exon	2634607	2634815	.	+	.	source_transcript=ENST00000803195.1;source_transcript_name=LINC00278-216;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803195.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803195.1,ENST00000803195.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000342;transcript_name=HG003_chrY_T0000342;gene_name=LINC00278;ID=exon:HG003_chrY_T0000342:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2634816	2710867	.	+	.	source_transcript=ENST00000803195.1;source_transcript_name=LINC00278-216;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803195.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803195.1,ENST00000803195.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000342;transcript_name=HG003_chrY_T0000342;gene_name=LINC00278;ID=intron:HG003_chrY_T0000342:0;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2710868	2710925	.	+	.	source_transcript=ENST00000803195.1;source_transcript_name=LINC00278-216;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803195.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803195.1,ENST00000803195.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000342;transcript_name=HG003_chrY_T0000342;gene_name=LINC00278;ID=exon:HG003_chrY_T0000342:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2710926	2728580	.	+	.	source_transcript=ENST00000803195.1;source_transcript_name=LINC00278-216;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803195.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803195.1,ENST00000803195.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000342;transcript_name=HG003_chrY_T0000342;gene_name=LINC00278;ID=intron:HG003_chrY_T0000342:1;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2728581	2728642	.	+	.	source_transcript=ENST00000803195.1;source_transcript_name=LINC00278-216;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803195.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803195.1,ENST00000803195.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000342;transcript_name=HG003_chrY_T0000342;gene_name=LINC00278;ID=exon:HG003_chrY_T0000342:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	2728643	2741403	.	+	.	source_transcript=ENST00000803195.1;source_transcript_name=LINC00278-216;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803195.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803195.1,ENST00000803195.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000342;transcript_name=HG003_chrY_T0000342;gene_name=LINC00278;ID=intron:HG003_chrY_T0000342:2;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	2741404	2742707	.	+	.	source_transcript=ENST00000803195.1;source_transcript_name=LINC00278-216;source_gene=ENSG00000231535.9;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231535.9;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000803195.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000803195.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00278;alternative_source_transcripts=ENST00000803195.1,ENST00000803195.1;transcript_id=HG003_chrY_T0000342;gene_id=HG003_chrY_G0000068;Parent=HG003_chrY_T0000342;transcript_name=HG003_chrY_T0000342;gene_name=LINC00278;ID=exon:HG003_chrY_T0000342:3;Name=LINC00278;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	2925391	2926409	.	+	.	source_gene_common_name=AGPAT5P1;source_gene=ENSG00000234652.1;alternative_source_transcripts=ENST00000455855.1,ENST00000455855.1;gene_id=HG003_chrY_G0000069;gene_biotype=processed_pseudogene;gene_name=AGPAT5P1;gene_sources=liftoff;ID=HG003_chrY_G0000069;Name=AGPAT5P1
HG003_chrY	CAT	transcript	2925391	2926409	1000	+	.	source_transcript=ENST00000455855.1;source_transcript_name=AGPAT5P1-201;source_gene=ENSG00000234652.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234652.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000455855.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455855.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AGPAT5P1;alternative_source_transcripts=ENST00000455855.1,ENST00000455855.1;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000069;Parent=HG003_chrY_G0000069;transcript_name=HG003_chrY_T0000343;gene_name=AGPAT5P1;ID=HG003_chrY_T0000343;Name=AGPAT5P1
HG003_chrY	CAT	exon	2925391	2926409	.	+	.	source_transcript=ENST00000455855.1;source_transcript_name=AGPAT5P1-201;source_gene=ENSG00000234652.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234652.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000455855.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455855.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AGPAT5P1;alternative_source_transcripts=ENST00000455855.1,ENST00000455855.1;transcript_id=HG003_chrY_T0000343;gene_id=HG003_chrY_G0000069;Parent=HG003_chrY_T0000343;transcript_name=HG003_chrY_T0000343;gene_name=AGPAT5P1;ID=exon:HG003_chrY_T0000343:0;Name=AGPAT5P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	3181275	3181433	.	-	.	source_gene_common_name=PRRC2CP1;source_gene=ENSG00000216777.1;alternative_source_transcripts=ENST00000404428.1,ENST00000404428.1;gene_id=HG003_chrY_G0000070;gene_biotype=processed_pseudogene;gene_name=PRRC2CP1;gene_sources=liftoff;ID=HG003_chrY_G0000070;Name=PRRC2CP1
HG003_chrY	CAT	transcript	3181275	3181433	1000	-	.	source_transcript=ENST00000404428.1;source_transcript_name=PRRC2CP1-201;source_gene=ENSG00000216777.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000216777.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000404428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000404428.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRRC2CP1;alternative_source_transcripts=ENST00000404428.1,ENST00000404428.1;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000070;Parent=HG003_chrY_G0000070;transcript_name=HG003_chrY_T0000344;gene_name=PRRC2CP1;ID=HG003_chrY_T0000344;Name=PRRC2CP1
HG003_chrY	CAT	exon	3181275	3181433	.	-	.	source_transcript=ENST00000404428.1;source_transcript_name=PRRC2CP1-201;source_gene=ENSG00000216777.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000216777.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000404428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000404428.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRRC2CP1;alternative_source_transcripts=ENST00000404428.1,ENST00000404428.1;transcript_id=HG003_chrY_T0000344;gene_id=HG003_chrY_G0000070;Parent=HG003_chrY_T0000344;transcript_name=HG003_chrY_T0000344;gene_name=PRRC2CP1;ID=exon:HG003_chrY_T0000344:0;Name=PRRC2CP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	3210696	3211670	.	+	.	source_gene_common_name=TGIF2LY;source_gene=ENSG00000176679.9;alternative_source_transcripts=ENST00000321217.5,ENST00000321217.5;gene_id=HG003_chrY_G0000071;gene_biotype=protein_coding;gene_name=TGIF2LY;gene_sources=liftoff;ID=HG003_chrY_G0000071;Name=TGIF2LY
HG003_chrY	CAT	transcript	3210696	3211670	100	+	.	source_transcript=ENST00000321217.5;source_transcript_name=TGIF2LY-201;source_gene=ENSG00000176679.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000176679.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000321217.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000321217.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=ENST00000321217.5,ENST00000321217.5;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_G0000071;transcript_name=HG003_chrY_T0000345;gene_name=TGIF2LY;ID=HG003_chrY_T0000345;Name=TGIF2LY
HG003_chrY	CAT	exon	3210696	3210756	.	+	.	source_transcript=ENST00000321217.5;source_transcript_name=TGIF2LY-201;source_gene=ENSG00000176679.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000176679.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000321217.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000321217.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=ENST00000321217.5,ENST00000321217.5;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000345;transcript_name=HG003_chrY_T0000345;gene_name=TGIF2LY;ID=exon:HG003_chrY_T0000345:0;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3210757	3210852	.	+	.	source_transcript=ENST00000321217.5;source_transcript_name=TGIF2LY-201;source_gene=ENSG00000176679.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000176679.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000321217.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000321217.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=ENST00000321217.5,ENST00000321217.5;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000345;transcript_name=HG003_chrY_T0000345;gene_name=TGIF2LY;ID=intron:HG003_chrY_T0000345:0;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3210853	3211670	.	+	.	source_transcript=ENST00000321217.5;source_transcript_name=TGIF2LY-201;source_gene=ENSG00000176679.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000176679.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000321217.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000321217.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=ENST00000321217.5,ENST00000321217.5;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000345;transcript_name=HG003_chrY_T0000345;gene_name=TGIF2LY;ID=exon:HG003_chrY_T0000345:1;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	3210874	3211431	.	+	0	source_transcript=ENST00000321217.5;source_transcript_name=TGIF2LY-201;source_gene=ENSG00000176679.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000176679.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000321217.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000321217.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=ENST00000321217.5,ENST00000321217.5;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000345;transcript_name=HG003_chrY_T0000345;gene_name=TGIF2LY;ID=CDS:HG003_chrY_T0000345:0;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	3210874	3210876	.	+	0	source_transcript=ENST00000321217.5;source_transcript_name=TGIF2LY-201;source_gene=ENSG00000176679.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000176679.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000321217.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000321217.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=ENST00000321217.5,ENST00000321217.5;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000345;transcript_name=HG003_chrY_T0000345;gene_name=TGIF2LY;ID=start_codon:HG003_chrY_T0000345;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	3211429	3211431	.	+	0	source_transcript=ENST00000321217.5;source_transcript_name=TGIF2LY-201;source_gene=ENSG00000176679.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000176679.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000321217.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000321217.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=ENST00000321217.5,ENST00000321217.5;transcript_id=HG003_chrY_T0000345;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000345;transcript_name=HG003_chrY_T0000345;gene_name=TGIF2LY;ID=stop_codon:HG003_chrY_T0000345;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	3210744	3211670	100	+	.	source_transcript=ENST00000559055.2;source_transcript_name=TGIF2LY-202;source_gene=ENSG00000176679.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000176679.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000559055.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000559055.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=ENST00000559055.2,ENST00000559055.2;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_G0000071;transcript_name=HG003_chrY_T0000346;gene_name=TGIF2LY;ID=HG003_chrY_T0000346;Name=TGIF2LY
HG003_chrY	CAT	exon	3210744	3211670	.	+	.	source_transcript=ENST00000559055.2;source_transcript_name=TGIF2LY-202;source_gene=ENSG00000176679.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000176679.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000559055.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000559055.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=ENST00000559055.2,ENST00000559055.2;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000346;transcript_name=HG003_chrY_T0000346;gene_name=TGIF2LY;ID=exon:HG003_chrY_T0000346:0;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	3210874	3211431	.	+	0	source_transcript=ENST00000559055.2;source_transcript_name=TGIF2LY-202;source_gene=ENSG00000176679.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000176679.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000559055.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000559055.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=ENST00000559055.2,ENST00000559055.2;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000346;transcript_name=HG003_chrY_T0000346;gene_name=TGIF2LY;ID=CDS:HG003_chrY_T0000346:0;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	3210874	3210876	.	+	0	source_transcript=ENST00000559055.2;source_transcript_name=TGIF2LY-202;source_gene=ENSG00000176679.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000176679.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000559055.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000559055.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=ENST00000559055.2,ENST00000559055.2;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000346;transcript_name=HG003_chrY_T0000346;gene_name=TGIF2LY;ID=start_codon:HG003_chrY_T0000346;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	3211429	3211431	.	+	0	source_transcript=ENST00000559055.2;source_transcript_name=TGIF2LY-202;source_gene=ENSG00000176679.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000176679.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000559055.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000559055.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TGIF2LY;alternative_source_transcripts=ENST00000559055.2,ENST00000559055.2;transcript_id=HG003_chrY_T0000346;gene_id=HG003_chrY_G0000071;Parent=HG003_chrY_T0000346;transcript_name=HG003_chrY_T0000346;gene_name=TGIF2LY;ID=stop_codon:HG003_chrY_T0000346;Name=TGIF2LY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	3314438	3315501	.	+	.	source_gene_common_name=USP12PY;source_gene=ENSG00000232927.1;alternative_source_transcripts=ENST00000427677.1,ENST00000427677.1;gene_id=HG003_chrY_G0000072;gene_biotype=processed_pseudogene;gene_name=USP12PY;gene_sources=liftoff;ID=HG003_chrY_G0000072;Name=USP12PY
HG003_chrY	CAT	transcript	3314438	3315501	1000	+	.	source_transcript=ENST00000427677.1;source_transcript_name=USP12PY-201;source_gene=ENSG00000232927.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232927.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000427677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427677.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP12PY;alternative_source_transcripts=ENST00000427677.1,ENST00000427677.1;transcript_id=HG003_chrY_T0000347;gene_id=HG003_chrY_G0000072;Parent=HG003_chrY_G0000072;transcript_name=HG003_chrY_T0000347;gene_name=USP12PY;ID=HG003_chrY_T0000347;Name=USP12PY
HG003_chrY	CAT	exon	3314438	3315501	.	+	.	source_transcript=ENST00000427677.1;source_transcript_name=USP12PY-201;source_gene=ENSG00000232927.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232927.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000427677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427677.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP12PY;alternative_source_transcripts=ENST00000427677.1,ENST00000427677.1;transcript_id=HG003_chrY_T0000347;gene_id=HG003_chrY_G0000072;Parent=HG003_chrY_T0000347;transcript_name=HG003_chrY_T0000347;gene_name=USP12PY;ID=exon:HG003_chrY_T0000347:0;Name=USP12PY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	3407828	3496516	.	+	.	source_gene_common_name=ENSG00000286050;source_gene=ENSG00000286050.2;alternative_source_transcripts=ENST00000805713.1,ENST00000805713.1;gene_id=HG003_chrY_G0000073;gene_biotype=lncRNA;gene_name=ENSG00000286050;gene_sources=liftoff;ID=HG003_chrY_G0000073;Name=ENSG00000286050
HG003_chrY	CAT	transcript	3407828	3466131	1000	+	.	source_transcript=ENST00000805713.1;source_transcript_name=ENST00000805713;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805713.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805713.1,ENST00000805713.1;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_G0000073;transcript_name=HG003_chrY_T0000348;gene_name=ENSG00000286050;ID=HG003_chrY_T0000348;Name=ENSG00000286050
HG003_chrY	CAT	exon	3407828	3407972	.	+	.	source_transcript=ENST00000805713.1;source_transcript_name=ENST00000805713;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805713.1,ENST00000805713.1;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000348;transcript_name=HG003_chrY_T0000348;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000348:0;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3407973	3435439	.	+	.	source_transcript=ENST00000805713.1;source_transcript_name=ENST00000805713;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805713.1,ENST00000805713.1;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000348;transcript_name=HG003_chrY_T0000348;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000348:0;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435440	3435563	.	+	.	source_transcript=ENST00000805713.1;source_transcript_name=ENST00000805713;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805713.1,ENST00000805713.1;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000348;transcript_name=HG003_chrY_T0000348;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000348:1;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3435564	3435995	.	+	.	source_transcript=ENST00000805713.1;source_transcript_name=ENST00000805713;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805713.1,ENST00000805713.1;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000348;transcript_name=HG003_chrY_T0000348;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000348:1;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435996	3436107	.	+	.	source_transcript=ENST00000805713.1;source_transcript_name=ENST00000805713;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805713.1,ENST00000805713.1;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000348;transcript_name=HG003_chrY_T0000348;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000348:2;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3436108	3464025	.	+	.	source_transcript=ENST00000805713.1;source_transcript_name=ENST00000805713;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805713.1,ENST00000805713.1;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000348;transcript_name=HG003_chrY_T0000348;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000348:2;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3464026	3464080	.	+	.	source_transcript=ENST00000805713.1;source_transcript_name=ENST00000805713;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805713.1,ENST00000805713.1;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000348;transcript_name=HG003_chrY_T0000348;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000348:3;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3464081	3465976	.	+	.	source_transcript=ENST00000805713.1;source_transcript_name=ENST00000805713;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805713.1,ENST00000805713.1;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000348;transcript_name=HG003_chrY_T0000348;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000348:3;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3465977	3466131	.	+	.	source_transcript=ENST00000805713.1;source_transcript_name=ENST00000805713;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805713.1,ENST00000805713.1;transcript_id=HG003_chrY_T0000348;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000348;transcript_name=HG003_chrY_T0000348;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000348:4;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	3417909	3496516	1000	+	.	source_transcript=ENST00000650970.2;source_transcript_name=ENST00000650970;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650970.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000650970.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000650970.2,ENST00000650970.2;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_G0000073;transcript_name=HG003_chrY_T0000350;gene_name=ENSG00000286050;ID=HG003_chrY_T0000350;Name=ENSG00000286050
HG003_chrY	CAT	exon	3417909	3418017	.	+	.	source_transcript=ENST00000650970.2;source_transcript_name=ENST00000650970;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650970.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000650970.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000650970.2,ENST00000650970.2;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000350;transcript_name=HG003_chrY_T0000350;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000350:0;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3418018	3435439	.	+	.	source_transcript=ENST00000650970.2;source_transcript_name=ENST00000650970;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650970.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000650970.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000650970.2,ENST00000650970.2;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000350;transcript_name=HG003_chrY_T0000350;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000350:0;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435440	3435563	.	+	.	source_transcript=ENST00000650970.2;source_transcript_name=ENST00000650970;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650970.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000650970.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000650970.2,ENST00000650970.2;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000350;transcript_name=HG003_chrY_T0000350;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000350:1;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3435564	3435995	.	+	.	source_transcript=ENST00000650970.2;source_transcript_name=ENST00000650970;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650970.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000650970.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000650970.2,ENST00000650970.2;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000350;transcript_name=HG003_chrY_T0000350;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000350:1;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435996	3436107	.	+	.	source_transcript=ENST00000650970.2;source_transcript_name=ENST00000650970;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650970.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000650970.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000650970.2,ENST00000650970.2;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000350;transcript_name=HG003_chrY_T0000350;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000350:2;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3436108	3495196	.	+	.	source_transcript=ENST00000650970.2;source_transcript_name=ENST00000650970;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650970.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000650970.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000650970.2,ENST00000650970.2;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000350;transcript_name=HG003_chrY_T0000350;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000350:2;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3495197	3495317	.	+	.	source_transcript=ENST00000650970.2;source_transcript_name=ENST00000650970;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650970.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000650970.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000650970.2,ENST00000650970.2;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000350;transcript_name=HG003_chrY_T0000350;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000350:3;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3495318	3495455	.	+	.	source_transcript=ENST00000650970.2;source_transcript_name=ENST00000650970;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650970.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000650970.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000650970.2,ENST00000650970.2;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000350;transcript_name=HG003_chrY_T0000350;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000350:3;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3495456	3495549	.	+	.	source_transcript=ENST00000650970.2;source_transcript_name=ENST00000650970;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650970.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000650970.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000650970.2,ENST00000650970.2;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000350;transcript_name=HG003_chrY_T0000350;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000350:4;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3495550	3496015	.	+	.	source_transcript=ENST00000650970.2;source_transcript_name=ENST00000650970;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650970.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000650970.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000650970.2,ENST00000650970.2;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000350;transcript_name=HG003_chrY_T0000350;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000350:4;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3496016	3496516	.	+	.	source_transcript=ENST00000650970.2;source_transcript_name=ENST00000650970;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650970.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000650970.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000650970.2,ENST00000650970.2;transcript_id=HG003_chrY_T0000350;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000350;transcript_name=HG003_chrY_T0000350;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000350:5;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	3417910	3468386	1000	+	.	source_transcript=ENST00000805714.1;source_transcript_name=ENST00000805714;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805714.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805714.1,ENST00000805714.1;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_G0000073;transcript_name=HG003_chrY_T0000351;gene_name=ENSG00000286050;ID=HG003_chrY_T0000351;Name=ENSG00000286050
HG003_chrY	CAT	exon	3417910	3418017	.	+	.	source_transcript=ENST00000805714.1;source_transcript_name=ENST00000805714;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805714.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805714.1,ENST00000805714.1;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000351;transcript_name=HG003_chrY_T0000351;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000351:0;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3418018	3435439	.	+	.	source_transcript=ENST00000805714.1;source_transcript_name=ENST00000805714;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805714.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805714.1,ENST00000805714.1;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000351;transcript_name=HG003_chrY_T0000351;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000351:0;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435440	3435563	.	+	.	source_transcript=ENST00000805714.1;source_transcript_name=ENST00000805714;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805714.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805714.1,ENST00000805714.1;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000351;transcript_name=HG003_chrY_T0000351;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000351:1;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3435564	3435995	.	+	.	source_transcript=ENST00000805714.1;source_transcript_name=ENST00000805714;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805714.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805714.1,ENST00000805714.1;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000351;transcript_name=HG003_chrY_T0000351;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000351:1;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435996	3436107	.	+	.	source_transcript=ENST00000805714.1;source_transcript_name=ENST00000805714;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805714.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805714.1,ENST00000805714.1;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000351;transcript_name=HG003_chrY_T0000351;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000351:2;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3436108	3467082	.	+	.	source_transcript=ENST00000805714.1;source_transcript_name=ENST00000805714;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805714.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805714.1,ENST00000805714.1;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000351;transcript_name=HG003_chrY_T0000351;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000351:2;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3467083	3467152	.	+	.	source_transcript=ENST00000805714.1;source_transcript_name=ENST00000805714;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805714.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805714.1,ENST00000805714.1;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000351;transcript_name=HG003_chrY_T0000351;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000351:3;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3467153	3467612	.	+	.	source_transcript=ENST00000805714.1;source_transcript_name=ENST00000805714;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805714.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805714.1,ENST00000805714.1;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000351;transcript_name=HG003_chrY_T0000351;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000351:3;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3467613	3468386	.	+	.	source_transcript=ENST00000805714.1;source_transcript_name=ENST00000805714;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805714.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805714.1,ENST00000805714.1;transcript_id=HG003_chrY_T0000351;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000351;transcript_name=HG003_chrY_T0000351;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000351:4;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	3417972	3468384	1000	+	.	source_transcript=ENST00000805715.1;source_transcript_name=ENST00000805715;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805715.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805715.1,ENST00000805715.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_G0000073;transcript_name=HG003_chrY_T0000352;gene_name=ENSG00000286050;ID=HG003_chrY_T0000352;Name=ENSG00000286050
HG003_chrY	CAT	exon	3417972	3418017	.	+	.	source_transcript=ENST00000805715.1;source_transcript_name=ENST00000805715;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805715.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805715.1,ENST00000805715.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000352;transcript_name=HG003_chrY_T0000352;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000352:0;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3418018	3432261	.	+	.	source_transcript=ENST00000805715.1;source_transcript_name=ENST00000805715;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805715.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805715.1,ENST00000805715.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000352;transcript_name=HG003_chrY_T0000352;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000352:0;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3432262	3432357	.	+	.	source_transcript=ENST00000805715.1;source_transcript_name=ENST00000805715;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805715.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805715.1,ENST00000805715.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000352;transcript_name=HG003_chrY_T0000352;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000352:1;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3432358	3435439	.	+	.	source_transcript=ENST00000805715.1;source_transcript_name=ENST00000805715;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805715.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805715.1,ENST00000805715.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000352;transcript_name=HG003_chrY_T0000352;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000352:1;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435440	3435563	.	+	.	source_transcript=ENST00000805715.1;source_transcript_name=ENST00000805715;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805715.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805715.1,ENST00000805715.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000352;transcript_name=HG003_chrY_T0000352;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000352:2;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3435564	3435995	.	+	.	source_transcript=ENST00000805715.1;source_transcript_name=ENST00000805715;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805715.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805715.1,ENST00000805715.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000352;transcript_name=HG003_chrY_T0000352;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000352:2;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435996	3436107	.	+	.	source_transcript=ENST00000805715.1;source_transcript_name=ENST00000805715;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805715.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805715.1,ENST00000805715.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000352;transcript_name=HG003_chrY_T0000352;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000352:3;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3436108	3467082	.	+	.	source_transcript=ENST00000805715.1;source_transcript_name=ENST00000805715;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805715.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805715.1,ENST00000805715.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000352;transcript_name=HG003_chrY_T0000352;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000352:3;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3467083	3467152	.	+	.	source_transcript=ENST00000805715.1;source_transcript_name=ENST00000805715;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805715.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805715.1,ENST00000805715.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000352;transcript_name=HG003_chrY_T0000352;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000352:4;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3467153	3467612	.	+	.	source_transcript=ENST00000805715.1;source_transcript_name=ENST00000805715;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805715.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805715.1,ENST00000805715.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000352;transcript_name=HG003_chrY_T0000352;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000352:4;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3467613	3468384	.	+	.	source_transcript=ENST00000805715.1;source_transcript_name=ENST00000805715;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805715.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805715.1,ENST00000805715.1;transcript_id=HG003_chrY_T0000352;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000352;transcript_name=HG003_chrY_T0000352;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000352:5;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	3432300	3466131	1000	+	.	source_transcript=ENST00000805716.1;source_transcript_name=ENST00000805716;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805716.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805716.1,ENST00000805716.1;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_G0000073;transcript_name=HG003_chrY_T0000353;gene_name=ENSG00000286050;ID=HG003_chrY_T0000353;Name=ENSG00000286050
HG003_chrY	CAT	exon	3432300	3432357	.	+	.	source_transcript=ENST00000805716.1;source_transcript_name=ENST00000805716;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805716.1,ENST00000805716.1;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000353;transcript_name=HG003_chrY_T0000353;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000353:0;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3432358	3435439	.	+	.	source_transcript=ENST00000805716.1;source_transcript_name=ENST00000805716;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805716.1,ENST00000805716.1;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000353;transcript_name=HG003_chrY_T0000353;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000353:0;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435440	3435563	.	+	.	source_transcript=ENST00000805716.1;source_transcript_name=ENST00000805716;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805716.1,ENST00000805716.1;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000353;transcript_name=HG003_chrY_T0000353;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000353:1;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3435564	3435995	.	+	.	source_transcript=ENST00000805716.1;source_transcript_name=ENST00000805716;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805716.1,ENST00000805716.1;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000353;transcript_name=HG003_chrY_T0000353;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000353:1;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3435996	3436107	.	+	.	source_transcript=ENST00000805716.1;source_transcript_name=ENST00000805716;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805716.1,ENST00000805716.1;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000353;transcript_name=HG003_chrY_T0000353;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000353:2;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3436108	3464025	.	+	.	source_transcript=ENST00000805716.1;source_transcript_name=ENST00000805716;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805716.1,ENST00000805716.1;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000353;transcript_name=HG003_chrY_T0000353;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000353:2;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3464026	3464080	.	+	.	source_transcript=ENST00000805716.1;source_transcript_name=ENST00000805716;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805716.1,ENST00000805716.1;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000353;transcript_name=HG003_chrY_T0000353;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000353:3;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3464081	3465976	.	+	.	source_transcript=ENST00000805716.1;source_transcript_name=ENST00000805716;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805716.1,ENST00000805716.1;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000353;transcript_name=HG003_chrY_T0000353;gene_name=ENSG00000286050;ID=intron:HG003_chrY_T0000353:3;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3465977	3466131	.	+	.	source_transcript=ENST00000805716.1;source_transcript_name=ENST00000805716;source_gene=ENSG00000286050.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286050.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805716.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286050;alternative_source_transcripts=ENST00000805716.1,ENST00000805716.1;transcript_id=HG003_chrY_T0000353;gene_id=HG003_chrY_G0000073;Parent=HG003_chrY_T0000353;transcript_name=HG003_chrY_T0000353;gene_name=ENSG00000286050;ID=exon:HG003_chrY_T0000353:4;Name=ENSG00000286050;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	3409624	3411173	.	-	.	source_gene_common_name=RNF19BPY;source_gene=ENSG00000225653.1;alternative_source_transcripts=ENST00000458209.1,ENST00000458209.1;gene_id=HG003_chrY_G0000074;gene_biotype=processed_pseudogene;gene_name=RNF19BPY;gene_sources=liftoff;ID=HG003_chrY_G0000074;Name=RNF19BPY
HG003_chrY	CAT	transcript	3409624	3411173	1000	-	.	source_transcript=ENST00000458209.1;source_transcript_name=RNF19BPY-201;source_gene=ENSG00000225653.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000225653.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000458209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458209.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNF19BPY;alternative_source_transcripts=ENST00000458209.1,ENST00000458209.1;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000074;Parent=HG003_chrY_G0000074;transcript_name=HG003_chrY_T0000349;gene_name=RNF19BPY;ID=HG003_chrY_T0000349;Name=RNF19BPY
HG003_chrY	CAT	exon	3409624	3411173	.	-	.	source_transcript=ENST00000458209.1;source_transcript_name=RNF19BPY-201;source_gene=ENSG00000225653.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000225653.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000458209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458209.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNF19BPY;alternative_source_transcripts=ENST00000458209.1,ENST00000458209.1;transcript_id=HG003_chrY_T0000349;gene_id=HG003_chrY_G0000074;Parent=HG003_chrY_T0000349;transcript_name=HG003_chrY_T0000349;gene_name=RNF19BPY;ID=exon:HG003_chrY_T0000349:0;Name=RNF19BPY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	3482843	3484488	.	-	.	source_gene_common_name=ENSG00000218410;source_gene=ENSG00000218410.1;alternative_source_transcripts=ENST00000405035.1,ENST00000405035.1;gene_id=HG003_chrY_G0000075;gene_biotype=processed_pseudogene;gene_name=ENSG00000218410;gene_sources=liftoff;ID=HG003_chrY_G0000075;Name=ENSG00000218410
HG003_chrY	CAT	transcript	3482843	3484488	1000	-	.	source_transcript=ENST00000405035.1;source_transcript_name=ENST00000405035;source_gene=ENSG00000218410.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000218410.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000405035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000405035.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000218410;alternative_source_transcripts=ENST00000405035.1,ENST00000405035.1;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000075;Parent=HG003_chrY_G0000075;transcript_name=HG003_chrY_T0000354;gene_name=ENSG00000218410;ID=HG003_chrY_T0000354;Name=ENSG00000218410
HG003_chrY	CAT	exon	3482843	3484488	.	-	.	source_transcript=ENST00000405035.1;source_transcript_name=ENST00000405035;source_gene=ENSG00000218410.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000218410.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000405035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000405035.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000218410;alternative_source_transcripts=ENST00000405035.1,ENST00000405035.1;transcript_id=HG003_chrY_T0000354;gene_id=HG003_chrY_G0000075;Parent=HG003_chrY_T0000354;transcript_name=HG003_chrY_T0000354;gene_name=ENSG00000218410;ID=exon:HG003_chrY_T0000354:0;Name=ENSG00000218410;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	3497925	3498341	.	-	.	source_gene_common_name=UBE2V1P3;source_gene=ENSG00000229518.1;alternative_source_transcripts=ENST00000439651.1,ENST00000439651.1;gene_id=HG003_chrY_G0000076;gene_biotype=processed_pseudogene;gene_name=UBE2V1P3;gene_sources=liftoff;ID=HG003_chrY_G0000076;Name=UBE2V1P3
HG003_chrY	CAT	transcript	3497925	3498341	1000	-	.	source_transcript=ENST00000439651.1;source_transcript_name=UBE2V1P3-201;source_gene=ENSG00000229518.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229518.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000439651.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439651.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UBE2V1P3;alternative_source_transcripts=ENST00000439651.1,ENST00000439651.1;transcript_id=HG003_chrY_T0000355;gene_id=HG003_chrY_G0000076;Parent=HG003_chrY_G0000076;transcript_name=HG003_chrY_T0000355;gene_name=UBE2V1P3;ID=HG003_chrY_T0000355;Name=UBE2V1P3
HG003_chrY	CAT	exon	3497925	3498341	.	-	.	source_transcript=ENST00000439651.1;source_transcript_name=UBE2V1P3-201;source_gene=ENSG00000229518.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229518.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000439651.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439651.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UBE2V1P3;alternative_source_transcripts=ENST00000439651.1,ENST00000439651.1;transcript_id=HG003_chrY_T0000355;gene_id=HG003_chrY_G0000076;Parent=HG003_chrY_T0000355;transcript_name=HG003_chrY_T0000355;gene_name=UBE2V1P3;ID=exon:HG003_chrY_T0000355:0;Name=UBE2V1P3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	3670245	3734530	.	+	.	source_gene_common_name=ENSG00000229308;source_gene=ENSG00000229308.2;alternative_source_transcripts=ENST00000753206.1,ENST00000753206.1;gene_id=HG003_chrY_G0000077;gene_biotype=lncRNA;gene_name=ENSG00000229308;gene_sources=liftoff;ID=HG003_chrY_G0000077;Name=ENSG00000229308
HG003_chrY	CAT	transcript	3670245	3734530	1000	+	.	source_transcript=ENST00000753206.1;source_transcript_name=ENST00000753206;source_gene=ENSG00000229308.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229308.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000753206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000753206.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229308;alternative_source_transcripts=ENST00000753206.1,ENST00000753206.1;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000077;Parent=HG003_chrY_G0000077;transcript_name=HG003_chrY_T0000356;gene_name=ENSG00000229308;ID=HG003_chrY_T0000356;Name=ENSG00000229308
HG003_chrY	CAT	exon	3670245	3670309	.	+	.	source_transcript=ENST00000753206.1;source_transcript_name=ENST00000753206;source_gene=ENSG00000229308.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229308.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000753206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000753206.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229308;alternative_source_transcripts=ENST00000753206.1,ENST00000753206.1;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000077;Parent=HG003_chrY_T0000356;transcript_name=HG003_chrY_T0000356;gene_name=ENSG00000229308;ID=exon:HG003_chrY_T0000356:0;Name=ENSG00000229308;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3670310	3733896	.	+	.	source_transcript=ENST00000753206.1;source_transcript_name=ENST00000753206;source_gene=ENSG00000229308.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229308.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000753206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000753206.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229308;alternative_source_transcripts=ENST00000753206.1,ENST00000753206.1;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000077;Parent=HG003_chrY_T0000356;transcript_name=HG003_chrY_T0000356;gene_name=ENSG00000229308;ID=intron:HG003_chrY_T0000356:0;Name=ENSG00000229308;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3733897	3734530	.	+	.	source_transcript=ENST00000753206.1;source_transcript_name=ENST00000753206;source_gene=ENSG00000229308.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229308.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000753206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000753206.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229308;alternative_source_transcripts=ENST00000753206.1,ENST00000753206.1;transcript_id=HG003_chrY_T0000356;gene_id=HG003_chrY_G0000077;Parent=HG003_chrY_T0000356;transcript_name=HG003_chrY_T0000356;gene_name=ENSG00000229308;ID=exon:HG003_chrY_T0000356:1;Name=ENSG00000229308;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	3670362	3734530	1000	+	.	source_transcript=ENST00000426699.2;source_transcript_name=ENST00000426699;source_gene=ENSG00000229308.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229308.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426699.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000426699.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229308;alternative_source_transcripts=ENST00000426699.2,ENST00000426699.2;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000077;Parent=HG003_chrY_G0000077;transcript_name=HG003_chrY_T0000357;gene_name=ENSG00000229308;ID=HG003_chrY_T0000357;Name=ENSG00000229308
HG003_chrY	CAT	exon	3670362	3670630	.	+	.	source_transcript=ENST00000426699.2;source_transcript_name=ENST00000426699;source_gene=ENSG00000229308.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229308.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426699.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000426699.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229308;alternative_source_transcripts=ENST00000426699.2,ENST00000426699.2;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000077;Parent=HG003_chrY_T0000357;transcript_name=HG003_chrY_T0000357;gene_name=ENSG00000229308;ID=exon:HG003_chrY_T0000357:0;Name=ENSG00000229308;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	3670631	3733896	.	+	.	source_transcript=ENST00000426699.2;source_transcript_name=ENST00000426699;source_gene=ENSG00000229308.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229308.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426699.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000426699.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229308;alternative_source_transcripts=ENST00000426699.2,ENST00000426699.2;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000077;Parent=HG003_chrY_T0000357;transcript_name=HG003_chrY_T0000357;gene_name=ENSG00000229308;ID=intron:HG003_chrY_T0000357:0;Name=ENSG00000229308;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	3733897	3734530	.	+	.	source_transcript=ENST00000426699.2;source_transcript_name=ENST00000426699;source_gene=ENSG00000229308.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229308.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426699.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000426699.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229308;alternative_source_transcripts=ENST00000426699.2,ENST00000426699.2;transcript_id=HG003_chrY_T0000357;gene_id=HG003_chrY_G0000077;Parent=HG003_chrY_T0000357;transcript_name=HG003_chrY_T0000357;gene_name=ENSG00000229308;ID=exon:HG003_chrY_T0000357:1;Name=ENSG00000229308;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	3808890	3808995	.	-	.	source_gene_common_name=RNU6-303P;source_gene=ENSG00000252900.1;alternative_source_transcripts=ENST00000517091.1,ENST00000517091.1;gene_id=HG003_chrY_G0000078;gene_biotype=snRNA;gene_name=RNU6-303P;gene_sources=liftoff;ID=HG003_chrY_G0000078;Name=RNU6-303P
HG003_chrY	CAT	transcript	3808890	3808995	1000	-	.	source_transcript=ENST00000517091.1;source_transcript_name=RNU6-303P-201;source_gene=ENSG00000252900.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252900.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000517091.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000517091.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-303P;alternative_source_transcripts=ENST00000517091.1,ENST00000517091.1;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_G0000078;transcript_name=HG003_chrY_T0000358;gene_name=RNU6-303P;ID=HG003_chrY_T0000358;Name=RNU6-303P
HG003_chrY	CAT	exon	3808890	3808995	.	-	.	source_transcript=ENST00000517091.1;source_transcript_name=RNU6-303P-201;source_gene=ENSG00000252900.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252900.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000517091.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000517091.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-303P;alternative_source_transcripts=ENST00000517091.1,ENST00000517091.1;transcript_id=HG003_chrY_T0000358;gene_id=HG003_chrY_G0000078;Parent=HG003_chrY_T0000358;transcript_name=HG003_chrY_T0000358;gene_name=RNU6-303P;ID=exon:HG003_chrY_T0000358:0;Name=RNU6-303P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	4435608	4436771	.	-	.	source_gene_common_name=SERBP1P2;source_gene=ENSG00000225878.1;alternative_source_transcripts=ENST00000436888.1,ENST00000436888.1;gene_id=HG003_chrY_G0000079;gene_biotype=processed_pseudogene;gene_name=SERBP1P2;gene_sources=liftoff;ID=HG003_chrY_G0000079;Name=SERBP1P2
HG003_chrY	CAT	transcript	4435608	4436771	1000	-	.	source_transcript=ENST00000436888.1;source_transcript_name=SERBP1P2-201;source_gene=ENSG00000225878.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000225878.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000436888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436888.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SERBP1P2;alternative_source_transcripts=ENST00000436888.1,ENST00000436888.1;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000079;Parent=HG003_chrY_G0000079;transcript_name=HG003_chrY_T0000359;gene_name=SERBP1P2;ID=HG003_chrY_T0000359;Name=SERBP1P2
HG003_chrY	CAT	exon	4435608	4436771	.	-	.	source_transcript=ENST00000436888.1;source_transcript_name=SERBP1P2-201;source_gene=ENSG00000225878.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000225878.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000436888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436888.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SERBP1P2;alternative_source_transcripts=ENST00000436888.1,ENST00000436888.1;transcript_id=HG003_chrY_T0000359;gene_id=HG003_chrY_G0000079;Parent=HG003_chrY_T0000359;transcript_name=HG003_chrY_T0000359;gene_name=SERBP1P2;ID=exon:HG003_chrY_T0000359:0;Name=SERBP1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	4627306	4634156	.	-	.	source_gene_common_name=ENSG00000277930;source_gene=ENSG00000277930.2;alternative_source_transcripts=ENST00000618284.2,ENST00000618284.2;gene_id=HG003_chrY_G0000080;gene_biotype=lncRNA;gene_name=ENSG00000277930;gene_sources=liftoff;ID=HG003_chrY_G0000080;Name=ENSG00000277930
HG003_chrY	CAT	transcript	4627306	4633588	1000	-	.	source_transcript=ENST00000618284.2;source_transcript_name=ENST00000618284;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000618284.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618284.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000618284.2,ENST00000618284.2;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_G0000080;transcript_name=HG003_chrY_T0000360;gene_name=ENSG00000277930;ID=HG003_chrY_T0000360;Name=ENSG00000277930
HG003_chrY	CAT	exon	4627306	4628160	.	-	.	source_transcript=ENST00000618284.2;source_transcript_name=ENST00000618284;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000618284.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618284.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000618284.2,ENST00000618284.2;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000360;transcript_name=HG003_chrY_T0000360;gene_name=ENSG00000277930;ID=exon:HG003_chrY_T0000360:0;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4628161	4631440	.	-	.	source_transcript=ENST00000618284.2;source_transcript_name=ENST00000618284;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000618284.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618284.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000618284.2,ENST00000618284.2;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000360;transcript_name=HG003_chrY_T0000360;gene_name=ENSG00000277930;ID=intron:HG003_chrY_T0000360:0;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4631441	4631614	.	-	.	source_transcript=ENST00000618284.2;source_transcript_name=ENST00000618284;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000618284.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618284.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000618284.2,ENST00000618284.2;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000360;transcript_name=HG003_chrY_T0000360;gene_name=ENSG00000277930;ID=exon:HG003_chrY_T0000360:1;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4631615	4633322	.	-	.	source_transcript=ENST00000618284.2;source_transcript_name=ENST00000618284;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000618284.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618284.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000618284.2,ENST00000618284.2;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000360;transcript_name=HG003_chrY_T0000360;gene_name=ENSG00000277930;ID=intron:HG003_chrY_T0000360:1;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4633323	4633588	.	-	.	source_transcript=ENST00000618284.2;source_transcript_name=ENST00000618284;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000618284.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618284.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000618284.2,ENST00000618284.2;transcript_id=HG003_chrY_T0000360;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000360;transcript_name=HG003_chrY_T0000360;gene_name=ENSG00000277930;ID=exon:HG003_chrY_T0000360:2;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4627306	4634156	1000	-	.	source_transcript=ENST00000794104.1;source_transcript_name=ENST00000794104;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000794104.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000794104.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000794104.1,ENST00000794104.1;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_G0000080;transcript_name=HG003_chrY_T0000361;gene_name=ENSG00000277930;ID=HG003_chrY_T0000361;Name=ENSG00000277930
HG003_chrY	CAT	exon	4627306	4628160	.	-	.	source_transcript=ENST00000794104.1;source_transcript_name=ENST00000794104;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000794104.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000794104.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000794104.1,ENST00000794104.1;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000361;transcript_name=HG003_chrY_T0000361;gene_name=ENSG00000277930;ID=exon:HG003_chrY_T0000361:0;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4628161	4631440	.	-	.	source_transcript=ENST00000794104.1;source_transcript_name=ENST00000794104;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000794104.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000794104.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000794104.1,ENST00000794104.1;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000361;transcript_name=HG003_chrY_T0000361;gene_name=ENSG00000277930;ID=intron:HG003_chrY_T0000361:0;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4631441	4631614	.	-	.	source_transcript=ENST00000794104.1;source_transcript_name=ENST00000794104;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000794104.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000794104.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000794104.1,ENST00000794104.1;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000361;transcript_name=HG003_chrY_T0000361;gene_name=ENSG00000277930;ID=exon:HG003_chrY_T0000361:1;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4631615	4633959	.	-	.	source_transcript=ENST00000794104.1;source_transcript_name=ENST00000794104;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000794104.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000794104.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000794104.1,ENST00000794104.1;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000361;transcript_name=HG003_chrY_T0000361;gene_name=ENSG00000277930;ID=intron:HG003_chrY_T0000361:1;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4633960	4634156	.	-	.	source_transcript=ENST00000794104.1;source_transcript_name=ENST00000794104;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000794104.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000794104.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000794104.1,ENST00000794104.1;transcript_id=HG003_chrY_T0000361;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000361;transcript_name=HG003_chrY_T0000361;gene_name=ENSG00000277930;ID=exon:HG003_chrY_T0000361:2;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4627792	4631653	1000	-	.	source_transcript=ENST00000622595.1;source_transcript_name=ENST00000622595;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000622595.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000622595.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000622595.1,ENST00000622595.1;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_G0000080;transcript_name=HG003_chrY_T0000362;gene_name=ENSG00000277930;ID=HG003_chrY_T0000362;Name=ENSG00000277930
HG003_chrY	CAT	exon	4627792	4628160	.	-	.	source_transcript=ENST00000622595.1;source_transcript_name=ENST00000622595;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000622595.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000622595.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000622595.1,ENST00000622595.1;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000362;transcript_name=HG003_chrY_T0000362;gene_name=ENSG00000277930;ID=exon:HG003_chrY_T0000362:0;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4628161	4631440	.	-	.	source_transcript=ENST00000622595.1;source_transcript_name=ENST00000622595;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000622595.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000622595.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000622595.1,ENST00000622595.1;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000362;transcript_name=HG003_chrY_T0000362;gene_name=ENSG00000277930;ID=intron:HG003_chrY_T0000362:0;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4631441	4631653	.	-	.	source_transcript=ENST00000622595.1;source_transcript_name=ENST00000622595;source_gene=ENSG00000277930.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000277930.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000622595.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000622595.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277930;alternative_source_transcripts=ENST00000622595.1,ENST00000622595.1;transcript_id=HG003_chrY_T0000362;gene_id=HG003_chrY_G0000080;Parent=HG003_chrY_T0000362;transcript_name=HG003_chrY_T0000362;gene_name=ENSG00000277930;ID=exon:HG003_chrY_T0000362:1;Name=ENSG00000277930;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	4634164	5376651	.	+	.	source_gene_common_name=PCDH11Y;source_gene=ENSG00000099715.15;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;gene_id=HG003_chrY_G0000081;gene_biotype=protein_coding;gene_name=PCDH11Y;gene_sources=liftoff;ID=HG003_chrY_G0000081;Name=PCDH11Y
HG003_chrY	CAT	transcript	4634164	4739399	100	+	.	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_G0000081;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=HG003_chrY_T0000363;Name=PCDH11Y
HG003_chrY	CAT	exon	4634164	4634543	.	+	.	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000363:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4634544	4665855	.	+	.	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000363:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4665856	4665961	.	+	.	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000363:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665962	4666619	.	+	.	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000363:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4666620	4666678	.	+	.	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000363:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4666647	4666678	.	+	0	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000363:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4666647	4666649	.	+	0	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000363;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4666679	4690838	.	+	.	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000363:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4690839	4691409	.	+	.	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000363:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690839	4691409	.	+	1	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000363:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000363:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000363:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000363:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	4738298	.	+	.	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000363:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4738299	4739399	.	+	.	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000363:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4738299	4738316	.	+	0	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000363:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	4738314	4738316	.	+	0	source_transcript=ENST00000333703.8;source_transcript_name=PCDH11Y-202;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000333703.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000333703.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000333703.8,ENST00000333703.8;transcript_id=HG003_chrY_T0000363;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000363;transcript_name=HG003_chrY_T0000363;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000363;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4634234	4739414	100	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_G0000081;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=HG003_chrY_T0000364;Name=PCDH11Y
HG003_chrY	CAT	exon	4634234	4634543	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000364:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4634544	4664848	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000364:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4664849	4665017	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000364:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665018	4665855	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000364:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4665856	4665961	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000364:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665962	4666619	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000364:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4666620	4666678	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000364:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4666647	4666678	.	+	0	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000364:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4666647	4666649	.	+	0	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000364;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4666679	4690838	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000364:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4690839	4691409	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000364:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690839	4691409	.	+	1	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000364:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000364:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000364:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000364:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	4738298	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000364:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4738299	4739414	.	+	.	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000364:6;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4738299	4738316	.	+	0	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000364:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	4738314	4738316	.	+	0	source_transcript=ENST00000622698.4;source_transcript_name=PCDH11Y-207;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000622698.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000622698.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000622698.4,ENST00000622698.4;transcript_id=HG003_chrY_T0000364;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000364;transcript_name=HG003_chrY_T0000364;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000364;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4634234	5376651	100	+	.	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_G0000081;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=HG003_chrY_T0000365;Name=PCDH11Y
HG003_chrY	CAT	exon	4634234	4634543	.	+	.	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000365:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4634544	4690838	.	+	.	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000365:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4690839	4691409	.	+	.	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000365:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4691050	4691409	.	+	0	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000365:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4691050	4691052	.	+	0	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000365;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000365:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000365:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000365:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	5135028	.	+	.	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000365:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5135029	5135227	.	+	.	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000365:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5135029	5135227	.	+	0	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000365:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5135228	5216188	.	+	.	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000365:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5216189	5216212	.	+	.	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000365:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5216189	5216212	.	+	2	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000365:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5216213	5371698	.	+	.	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000365:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5371699	5376651	.	+	.	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000365:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5371699	5372369	.	+	2	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000365:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	5372367	5372369	.	+	0	source_transcript=ENST00000698851.1;source_transcript_name=PCDH11Y-208;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698851.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698851.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698851.1,ENST00000698851.1;transcript_id=HG003_chrY_T0000365;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000365;transcript_name=HG003_chrY_T0000365;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000365;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4634234	4734220	100	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_G0000081;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=HG003_chrY_T0000366;Name=PCDH11Y
HG003_chrY	CAT	exon	4634234	4634543	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000366:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4634544	4664848	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000366:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4664849	4665017	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000366:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665018	4665164	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000366:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4665165	4665296	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000366:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665297	4665855	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000366:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4665856	4665961	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000366:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4665962	4666619	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000366:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4666620	4666678	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000366:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4666647	4666678	.	+	0	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000366:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4666647	4666649	.	+	0	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000366;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4666679	4690838	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000366:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4690839	4691409	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000366:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690839	4691409	.	+	1	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000366:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000366:5;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734220	.	+	.	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000366:6;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734220	.	+	0	source_transcript=ENST00000698927.1;source_transcript_name=PCDH11Y-209;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000698927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000698927.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000698927.1,ENST00000698927.1;transcript_id=HG003_chrY_T0000366;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000366;transcript_name=HG003_chrY_T0000366;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000366:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4634328	4665897	1000	+	.	source_transcript=ENST00000620615.4;source_transcript_name=PCDH11Y-205;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000620615.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000620615.4;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000620615.4,ENST00000620615.4;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_G0000081;transcript_name=HG003_chrY_T0000367;gene_name=PCDH11Y;ID=HG003_chrY_T0000367;Name=PCDH11Y
HG003_chrY	CAT	exon	4634328	4634543	.	+	.	source_transcript=ENST00000620615.4;source_transcript_name=PCDH11Y-205;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000620615.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000620615.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000620615.4,ENST00000620615.4;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000367;transcript_name=HG003_chrY_T0000367;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000367:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4634544	4636625	.	+	.	source_transcript=ENST00000620615.4;source_transcript_name=PCDH11Y-205;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000620615.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000620615.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000620615.4,ENST00000620615.4;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000367;transcript_name=HG003_chrY_T0000367;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000367:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4636626	4636696	.	+	.	source_transcript=ENST00000620615.4;source_transcript_name=PCDH11Y-205;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000620615.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000620615.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000620615.4,ENST00000620615.4;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000367;transcript_name=HG003_chrY_T0000367;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000367:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4636697	4665855	.	+	.	source_transcript=ENST00000620615.4;source_transcript_name=PCDH11Y-205;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000620615.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000620615.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000620615.4,ENST00000620615.4;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000367;transcript_name=HG003_chrY_T0000367;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000367:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4665856	4665897	.	+	.	source_transcript=ENST00000620615.4;source_transcript_name=PCDH11Y-205;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000620615.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000620615.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000620615.4,ENST00000620615.4;transcript_id=HG003_chrY_T0000367;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000367;transcript_name=HG003_chrY_T0000367;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000367:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4634338	4691038	100	+	.	source_transcript=ENST00000621505.1;source_transcript_name=PCDH11Y-206;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000621505.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621505.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000621505.1,ENST00000621505.1;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_G0000081;transcript_name=HG003_chrY_T0000368;gene_name=PCDH11Y;ID=HG003_chrY_T0000368;Name=PCDH11Y
HG003_chrY	CAT	exon	4634338	4634543	.	+	.	source_transcript=ENST00000621505.1;source_transcript_name=PCDH11Y-206;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000621505.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000621505.1,ENST00000621505.1;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000368;transcript_name=HG003_chrY_T0000368;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000368:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4634544	4636625	.	+	.	source_transcript=ENST00000621505.1;source_transcript_name=PCDH11Y-206;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000621505.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000621505.1,ENST00000621505.1;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000368;transcript_name=HG003_chrY_T0000368;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000368:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4636626	4636696	.	+	.	source_transcript=ENST00000621505.1;source_transcript_name=PCDH11Y-206;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000621505.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000621505.1,ENST00000621505.1;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000368;transcript_name=HG003_chrY_T0000368;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000368:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4636697	4666619	.	+	.	source_transcript=ENST00000621505.1;source_transcript_name=PCDH11Y-206;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000621505.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000621505.1,ENST00000621505.1;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000368;transcript_name=HG003_chrY_T0000368;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000368:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4666620	4666678	.	+	.	source_transcript=ENST00000621505.1;source_transcript_name=PCDH11Y-206;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000621505.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000621505.1,ENST00000621505.1;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000368;transcript_name=HG003_chrY_T0000368;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000368:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4666647	4666678	.	+	0	source_transcript=ENST00000621505.1;source_transcript_name=PCDH11Y-206;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000621505.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000621505.1,ENST00000621505.1;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000368;transcript_name=HG003_chrY_T0000368;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000368:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4666647	4666649	.	+	0	source_transcript=ENST00000621505.1;source_transcript_name=PCDH11Y-206;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000621505.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000621505.1,ENST00000621505.1;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000368;transcript_name=HG003_chrY_T0000368;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000368;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4666679	4690838	.	+	.	source_transcript=ENST00000621505.1;source_transcript_name=PCDH11Y-206;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000621505.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000621505.1,ENST00000621505.1;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000368;transcript_name=HG003_chrY_T0000368;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000368:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4690839	4691038	.	+	.	source_transcript=ENST00000621505.1;source_transcript_name=PCDH11Y-206;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000621505.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000621505.1,ENST00000621505.1;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000368;transcript_name=HG003_chrY_T0000368;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000368:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690839	4691038	.	+	1	source_transcript=ENST00000621505.1;source_transcript_name=PCDH11Y-206;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000621505.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621505.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000621505.1,ENST00000621505.1;transcript_id=HG003_chrY_T0000368;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000368;transcript_name=HG003_chrY_T0000368;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000368:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4690038	4735392	100	+	.	source_transcript=ENST00000215473.7;source_transcript_name=PCDH11Y-201;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000215473.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000215473.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000215473.7,ENST00000215473.7;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_G0000081;transcript_name=HG003_chrY_T0000370;gene_name=PCDH11Y;ID=HG003_chrY_T0000370;Name=PCDH11Y
HG003_chrY	CAT	exon	4690038	4691409	.	+	.	source_transcript=ENST00000215473.7;source_transcript_name=PCDH11Y-201;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000215473.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000215473.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000215473.7,ENST00000215473.7;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000370;transcript_name=HG003_chrY_T0000370;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000370:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690774	4691409	.	+	0	source_transcript=ENST00000215473.7;source_transcript_name=PCDH11Y-201;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000215473.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000215473.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000215473.7,ENST00000215473.7;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000370;transcript_name=HG003_chrY_T0000370;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000370:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4690774	4690776	.	+	0	source_transcript=ENST00000215473.7;source_transcript_name=PCDH11Y-201;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000215473.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000215473.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000215473.7,ENST00000215473.7;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000370;transcript_name=HG003_chrY_T0000370;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000370;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=ENST00000215473.7;source_transcript_name=PCDH11Y-201;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000215473.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000215473.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000215473.7,ENST00000215473.7;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000370;transcript_name=HG003_chrY_T0000370;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000370:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4735392	.	+	.	source_transcript=ENST00000215473.7;source_transcript_name=PCDH11Y-201;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000215473.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000215473.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000215473.7,ENST00000215473.7;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000370;transcript_name=HG003_chrY_T0000370;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000370:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734695	.	+	0	source_transcript=ENST00000215473.7;source_transcript_name=PCDH11Y-201;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000215473.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000215473.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000215473.7,ENST00000215473.7;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000370;transcript_name=HG003_chrY_T0000370;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000370:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	4734693	4734695	.	+	0	source_transcript=ENST00000215473.7;source_transcript_name=PCDH11Y-201;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000215473.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000215473.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000215473.7,ENST00000215473.7;transcript_id=HG003_chrY_T0000370;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000370;transcript_name=HG003_chrY_T0000370;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000370;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4690040	4738655	100	+	.	source_transcript=ENST00000362095.9;source_transcript_name=PCDH11Y-203;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362095.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000362095.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000362095.9,ENST00000362095.9;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_G0000081;transcript_name=HG003_chrY_T0000371;gene_name=PCDH11Y;ID=HG003_chrY_T0000371;Name=PCDH11Y
HG003_chrY	CAT	exon	4690040	4691409	.	+	.	source_transcript=ENST00000362095.9;source_transcript_name=PCDH11Y-203;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362095.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000362095.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000362095.9,ENST00000362095.9;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000371;transcript_name=HG003_chrY_T0000371;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000371:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690774	4691409	.	+	0	source_transcript=ENST00000362095.9;source_transcript_name=PCDH11Y-203;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362095.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000362095.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000362095.9,ENST00000362095.9;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000371;transcript_name=HG003_chrY_T0000371;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000371:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4690774	4690776	.	+	0	source_transcript=ENST00000362095.9;source_transcript_name=PCDH11Y-203;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362095.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000362095.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000362095.9,ENST00000362095.9;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000371;transcript_name=HG003_chrY_T0000371;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000371;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=ENST00000362095.9;source_transcript_name=PCDH11Y-203;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362095.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000362095.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000362095.9,ENST00000362095.9;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000371;transcript_name=HG003_chrY_T0000371;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000371:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=ENST00000362095.9;source_transcript_name=PCDH11Y-203;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362095.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000362095.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000362095.9,ENST00000362095.9;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000371;transcript_name=HG003_chrY_T0000371;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000371:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=ENST00000362095.9;source_transcript_name=PCDH11Y-203;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362095.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000362095.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000362095.9,ENST00000362095.9;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000371;transcript_name=HG003_chrY_T0000371;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000371:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	4738298	.	+	.	source_transcript=ENST00000362095.9;source_transcript_name=PCDH11Y-203;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362095.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000362095.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000362095.9,ENST00000362095.9;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000371;transcript_name=HG003_chrY_T0000371;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000371:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4738299	4738655	.	+	.	source_transcript=ENST00000362095.9;source_transcript_name=PCDH11Y-203;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362095.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000362095.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000362095.9,ENST00000362095.9;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000371;transcript_name=HG003_chrY_T0000371;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000371:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4738299	4738316	.	+	0	source_transcript=ENST00000362095.9;source_transcript_name=PCDH11Y-203;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362095.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000362095.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000362095.9,ENST00000362095.9;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000371;transcript_name=HG003_chrY_T0000371;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000371:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	4738314	4738316	.	+	0	source_transcript=ENST00000362095.9;source_transcript_name=PCDH11Y-203;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362095.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000362095.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000362095.9,ENST00000362095.9;transcript_id=HG003_chrY_T0000371;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000371;transcript_name=HG003_chrY_T0000371;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000371;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	4690040	5376651	100	+	.	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_G0000081;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=HG003_chrY_T0000372;Name=PCDH11Y
HG003_chrY	CAT	exon	4690040	4691409	.	+	.	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000372:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4690774	4691409	.	+	0	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000372:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	4690774	4690776	.	+	0	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=start_codon:HG003_chrY_T0000372;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4691410	4732169	.	+	.	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000372:0;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	4732170	4734662	.	+	.	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000372:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	4732170	4734662	.	+	0	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000372:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	4734663	5135028	.	+	.	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000372:1;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5135029	5135227	.	+	.	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000372:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5135029	5135227	.	+	0	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000372:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5135228	5216188	.	+	.	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000372:2;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5216189	5216212	.	+	.	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000372:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5216189	5216212	.	+	2	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000372:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5216213	5371698	.	+	.	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=intron:HG003_chrY_T0000372:3;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5371699	5376651	.	+	.	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=exon:HG003_chrY_T0000372:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	5371699	5372369	.	+	2	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=CDS:HG003_chrY_T0000372:4;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	5372367	5372369	.	+	0	source_transcript=ENST00000400457.3;source_transcript_name=PCDH11Y-204;source_gene=ENSG00000099715.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099715.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000400457.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400457.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCDH11Y;alternative_source_transcripts=ENST00000400457.3,ENST00000400457.3;transcript_id=HG003_chrY_T0000372;gene_id=HG003_chrY_G0000081;Parent=HG003_chrY_T0000372;transcript_name=HG003_chrY_T0000372;gene_name=PCDH11Y;ID=stop_codon:HG003_chrY_T0000372;Name=PCDH11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	4653013	4653203	.	+	.	source_gene_common_name=RNU2-57P;source_gene=ENSG00000252468.1;alternative_source_transcripts=ENST00000516659.1,ENST00000516659.1;gene_id=HG003_chrY_G0000082;gene_biotype=snRNA;gene_name=RNU2-57P;gene_sources=liftoff;ID=HG003_chrY_G0000082;Name=RNU2-57P
HG003_chrY	CAT	transcript	4653013	4653203	1000	+	.	source_transcript=ENST00000516659.1;source_transcript_name=RNU2-57P-201;source_gene=ENSG00000252468.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252468.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516659.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU2-57P;alternative_source_transcripts=ENST00000516659.1,ENST00000516659.1;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_G0000082;transcript_name=HG003_chrY_T0000369;gene_name=RNU2-57P;ID=HG003_chrY_T0000369;Name=RNU2-57P
HG003_chrY	CAT	exon	4653013	4653203	.	+	.	source_transcript=ENST00000516659.1;source_transcript_name=RNU2-57P-201;source_gene=ENSG00000252468.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252468.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516659.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU2-57P;alternative_source_transcripts=ENST00000516659.1,ENST00000516659.1;transcript_id=HG003_chrY_T0000369;gene_id=HG003_chrY_G0000082;Parent=HG003_chrY_T0000369;transcript_name=HG003_chrY_T0000369;gene_name=RNU2-57P;ID=exon:HG003_chrY_T0000369:0;Name=RNU2-57P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	4841176	4842030	.	-	.	source_gene_common_name=VDAC1P6;source_gene=ENSG00000231341.1;alternative_source_transcripts=ENST00000430062.1,ENST00000430062.1;gene_id=HG003_chrY_G0000083;gene_biotype=processed_pseudogene;gene_name=VDAC1P6;gene_sources=liftoff;ID=HG003_chrY_G0000083;Name=VDAC1P6
HG003_chrY	CAT	transcript	4841176	4842030	1000	-	.	source_transcript=ENST00000430062.1;source_transcript_name=VDAC1P6-201;source_gene=ENSG00000231341.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000231341.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000430062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430062.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VDAC1P6;alternative_source_transcripts=ENST00000430062.1,ENST00000430062.1;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000083;Parent=HG003_chrY_G0000083;transcript_name=HG003_chrY_T0000373;gene_name=VDAC1P6;ID=HG003_chrY_T0000373;Name=VDAC1P6
HG003_chrY	CAT	exon	4841176	4842030	.	-	.	source_transcript=ENST00000430062.1;source_transcript_name=VDAC1P6-201;source_gene=ENSG00000231341.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000231341.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000430062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430062.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VDAC1P6;alternative_source_transcripts=ENST00000430062.1,ENST00000430062.1;transcript_id=HG003_chrY_T0000373;gene_id=HG003_chrY_G0000083;Parent=HG003_chrY_T0000373;transcript_name=HG003_chrY_T0000373;gene_name=VDAC1P6;ID=exon:HG003_chrY_T0000373:0;Name=VDAC1P6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	4971713	4972932	.	-	.	source_gene_common_name=EIF4A1P2;source_gene=ENSG00000235001.3;alternative_source_transcripts=ENST00000422633.1,ENST00000422633.1;gene_id=HG003_chrY_G0000084;gene_biotype=processed_pseudogene;gene_name=EIF4A1P2;gene_sources=liftoff;ID=HG003_chrY_G0000084;Name=EIF4A1P2
HG003_chrY	CAT	transcript	4971713	4972932	1000	-	.	source_transcript=ENST00000422633.1;source_transcript_name=EIF4A1P2-201;source_gene=ENSG00000235001.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000235001.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000422633.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422633.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF4A1P2;alternative_source_transcripts=ENST00000422633.1,ENST00000422633.1;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_G0000084;transcript_name=HG003_chrY_T0000374;gene_name=EIF4A1P2;ID=HG003_chrY_T0000374;Name=EIF4A1P2
HG003_chrY	CAT	exon	4971713	4972932	.	-	.	source_transcript=ENST00000422633.1;source_transcript_name=EIF4A1P2-201;source_gene=ENSG00000235001.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000235001.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000422633.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422633.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF4A1P2;alternative_source_transcripts=ENST00000422633.1,ENST00000422633.1;transcript_id=HG003_chrY_T0000374;gene_id=HG003_chrY_G0000084;Parent=HG003_chrY_T0000374;transcript_name=HG003_chrY_T0000374;gene_name=EIF4A1P2;ID=exon:HG003_chrY_T0000374:0;Name=EIF4A1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5207559	5208845	.	+	.	source_gene_common_name=KRT18P10;source_gene=ENSG00000214207.2;alternative_source_transcripts=ENST00000388836.3,ENST00000388836.3;gene_id=HG003_chrY_G0000085;gene_biotype=processed_pseudogene;gene_name=KRT18P10;gene_sources=liftoff;ID=HG003_chrY_G0000085;Name=KRT18P10
HG003_chrY	CAT	transcript	5207559	5208845	1000	+	.	source_transcript=ENST00000388836.3;source_transcript_name=KRT18P10-201;source_gene=ENSG00000214207.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000214207.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000388836.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000388836.3;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KRT18P10;alternative_source_transcripts=ENST00000388836.3,ENST00000388836.3;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000085;Parent=HG003_chrY_G0000085;transcript_name=HG003_chrY_T0000375;gene_name=KRT18P10;ID=HG003_chrY_T0000375;Name=KRT18P10
HG003_chrY	CAT	exon	5207559	5208845	.	+	.	source_transcript=ENST00000388836.3;source_transcript_name=KRT18P10-201;source_gene=ENSG00000214207.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000214207.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000388836.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000388836.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KRT18P10;alternative_source_transcripts=ENST00000388836.3,ENST00000388836.3;transcript_id=HG003_chrY_T0000375;gene_id=HG003_chrY_G0000085;Parent=HG003_chrY_T0000375;transcript_name=HG003_chrY_T0000375;gene_name=KRT18P10;ID=exon:HG003_chrY_T0000375:0;Name=KRT18P10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5268902	5269077	.	-	.	source_gene_common_name=SNX3P1Y;source_gene=ENSG00000278585.1;alternative_source_transcripts=ENST00000615757.1,ENST00000615757.1;gene_id=HG003_chrY_G0000086;gene_biotype=processed_pseudogene;gene_name=SNX3P1Y;gene_sources=liftoff;ID=HG003_chrY_G0000086;Name=SNX3P1Y
HG003_chrY	CAT	transcript	5268902	5269077	1000	-	.	source_transcript=ENST00000615757.1;source_transcript_name=SNX3P1Y-201;source_gene=ENSG00000278585.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000278585.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000615757.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615757.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SNX3P1Y;alternative_source_transcripts=ENST00000615757.1,ENST00000615757.1;transcript_id=HG003_chrY_T0000376;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_G0000086;transcript_name=HG003_chrY_T0000376;gene_name=SNX3P1Y;ID=HG003_chrY_T0000376;Name=SNX3P1Y
HG003_chrY	CAT	exon	5268902	5269077	.	-	.	source_transcript=ENST00000615757.1;source_transcript_name=SNX3P1Y-201;source_gene=ENSG00000278585.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000278585.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000615757.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615757.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SNX3P1Y;alternative_source_transcripts=ENST00000615757.1,ENST00000615757.1;transcript_id=HG003_chrY_T0000376;gene_id=HG003_chrY_G0000086;Parent=HG003_chrY_T0000376;transcript_name=HG003_chrY_T0000376;gene_name=SNX3P1Y;ID=exon:HG003_chrY_T0000376:0;Name=SNX3P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5427725	5428162	.	-	.	source_gene_common_name=RPL26P37;source_gene=ENSG00000235175.1;alternative_source_transcripts=ENST00000411983.1,ENST00000411983.1;gene_id=HG003_chrY_G0000087;gene_biotype=processed_pseudogene;gene_name=RPL26P37;gene_sources=liftoff;ID=HG003_chrY_G0000087;Name=RPL26P37
HG003_chrY	CAT	transcript	5427725	5428162	1000	-	.	source_transcript=ENST00000411983.1;source_transcript_name=RPL26P37-201;source_gene=ENSG00000235175.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000235175.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000411983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411983.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPL26P37;alternative_source_transcripts=ENST00000411983.1,ENST00000411983.1;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000087;Parent=HG003_chrY_G0000087;transcript_name=HG003_chrY_T0000377;gene_name=RPL26P37;ID=HG003_chrY_T0000377;Name=RPL26P37
HG003_chrY	CAT	exon	5427725	5428162	.	-	.	source_transcript=ENST00000411983.1;source_transcript_name=RPL26P37-201;source_gene=ENSG00000235175.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000235175.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000411983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411983.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPL26P37;alternative_source_transcripts=ENST00000411983.1,ENST00000411983.1;transcript_id=HG003_chrY_T0000377;gene_id=HG003_chrY_G0000087;Parent=HG003_chrY_T0000377;transcript_name=HG003_chrY_T0000377;gene_name=RPL26P37;ID=exon:HG003_chrY_T0000377:0;Name=RPL26P37;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5521924	5523160	.	+	.	source_gene_common_name=TUSC2P1;source_gene=ENSG00000285470.1;alternative_source_transcripts=ENST00000645906.1,ENST00000645906.1;gene_id=HG003_chrY_G0000088;gene_biotype=processed_pseudogene;gene_name=TUSC2P1;gene_sources=liftoff;ID=HG003_chrY_G0000088;Name=TUSC2P1
HG003_chrY	CAT	transcript	5521924	5523160	1000	+	.	source_transcript=ENST00000645906.1;source_transcript_name=TUSC2P1-201;source_gene=ENSG00000285470.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000285470.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000645906.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000645906.1;transcript_score=199.83800000000002;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUSC2P1;alternative_source_transcripts=ENST00000645906.1,ENST00000645906.1;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_G0000088;transcript_name=HG003_chrY_T0000378;gene_name=TUSC2P1;ID=HG003_chrY_T0000378;Name=TUSC2P1
HG003_chrY	CAT	exon	5521924	5523160	.	+	.	source_transcript=ENST00000645906.1;source_transcript_name=TUSC2P1-201;source_gene=ENSG00000285470.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000285470.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000645906.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000645906.1;transcript_score=199.83800000000002;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUSC2P1;alternative_source_transcripts=ENST00000645906.1,ENST00000645906.1;transcript_id=HG003_chrY_T0000378;gene_id=HG003_chrY_G0000088;Parent=HG003_chrY_T0000378;transcript_name=HG003_chrY_T0000378;gene_name=TUSC2P1;ID=exon:HG003_chrY_T0000378:0;Name=TUSC2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5793178	5793641	.	+	.	source_gene_common_name=DLGAP5P1;source_gene=ENSG00000237195.1;alternative_source_transcripts=ENST00000430307.1,ENST00000430307.1;gene_id=HG003_chrY_G0000089;gene_biotype=processed_pseudogene;gene_name=DLGAP5P1;gene_sources=liftoff;ID=HG003_chrY_G0000089;Name=DLGAP5P1
HG003_chrY	CAT	transcript	5793178	5793641	1000	+	.	source_transcript=ENST00000430307.1;source_transcript_name=DLGAP5P1-201;source_gene=ENSG00000237195.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237195.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000430307.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430307.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DLGAP5P1;alternative_source_transcripts=ENST00000430307.1,ENST00000430307.1;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000089;Parent=HG003_chrY_G0000089;transcript_name=HG003_chrY_T0000379;gene_name=DLGAP5P1;ID=HG003_chrY_T0000379;Name=DLGAP5P1
HG003_chrY	CAT	exon	5793178	5793641	.	+	.	source_transcript=ENST00000430307.1;source_transcript_name=DLGAP5P1-201;source_gene=ENSG00000237195.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237195.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000430307.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430307.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DLGAP5P1;alternative_source_transcripts=ENST00000430307.1,ENST00000430307.1;transcript_id=HG003_chrY_T0000379;gene_id=HG003_chrY_G0000089;Parent=HG003_chrY_T0000379;transcript_name=HG003_chrY_T0000379;gene_name=DLGAP5P1;ID=exon:HG003_chrY_T0000379:0;Name=DLGAP5P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5875645	5880466	.	-	.	source_gene_common_name=TTTY23;source_gene=ENSG00000239225.2;gene_id=HG003_chrY_G0000090;gene_biotype=lncRNA;gene_name=TTTY23;gene_sources=liftoff;ID=HG003_chrY_G0000090;Name=TTTY23
HG003_chrY	CAT	transcript	5875645	5880466	1000	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_G0000090;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=HG003_chrY_T0000380;Name=TTTY23
HG003_chrY	CAT	exon	5875645	5876240	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=exon:HG003_chrY_T0000380:0;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5876241	5876792	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=intron:HG003_chrY_T0000380:0;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5876793	5876900	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=exon:HG003_chrY_T0000380:1;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5876901	5877080	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=intron:HG003_chrY_T0000380:1;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5877081	5877133	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=exon:HG003_chrY_T0000380:2;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5877134	5877673	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=intron:HG003_chrY_T0000380:2;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5877674	5877819	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=exon:HG003_chrY_T0000380:3;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5877820	5877932	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=intron:HG003_chrY_T0000380:3;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5877933	5878022	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=exon:HG003_chrY_T0000380:4;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5878023	5878217	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=intron:HG003_chrY_T0000380:4;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5878218	5878340	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=exon:HG003_chrY_T0000380:5;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5878341	5880284	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=intron:HG003_chrY_T0000380:5;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5880285	5880466	.	-	.	source_transcript=ENST00000728297.1;source_transcript_name=TTTY23-202;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000380;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000380;transcript_name=HG003_chrY_T0000380;gene_name=TTTY23;ID=exon:HG003_chrY_T0000380:6;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5875822	5880448	1000	-	.	source_transcript=ENST00000728298.1;source_transcript_name=TTTY23-203;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728298.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_G0000090;transcript_name=HG003_chrY_T0000381;gene_name=TTTY23;ID=HG003_chrY_T0000381;Name=TTTY23
HG003_chrY	CAT	exon	5875822	5876240	.	-	.	source_transcript=ENST00000728298.1;source_transcript_name=TTTY23-203;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000381;transcript_name=HG003_chrY_T0000381;gene_name=TTTY23;ID=exon:HG003_chrY_T0000381:0;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5876241	5876792	.	-	.	source_transcript=ENST00000728298.1;source_transcript_name=TTTY23-203;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000381;transcript_name=HG003_chrY_T0000381;gene_name=TTTY23;ID=intron:HG003_chrY_T0000381:0;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5876793	5876900	.	-	.	source_transcript=ENST00000728298.1;source_transcript_name=TTTY23-203;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000381;transcript_name=HG003_chrY_T0000381;gene_name=TTTY23;ID=exon:HG003_chrY_T0000381:1;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5876901	5877673	.	-	.	source_transcript=ENST00000728298.1;source_transcript_name=TTTY23-203;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000381;transcript_name=HG003_chrY_T0000381;gene_name=TTTY23;ID=intron:HG003_chrY_T0000381:1;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5877674	5877819	.	-	.	source_transcript=ENST00000728298.1;source_transcript_name=TTTY23-203;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000381;transcript_name=HG003_chrY_T0000381;gene_name=TTTY23;ID=exon:HG003_chrY_T0000381:2;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5877820	5877932	.	-	.	source_transcript=ENST00000728298.1;source_transcript_name=TTTY23-203;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000381;transcript_name=HG003_chrY_T0000381;gene_name=TTTY23;ID=intron:HG003_chrY_T0000381:2;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5877933	5878022	.	-	.	source_transcript=ENST00000728298.1;source_transcript_name=TTTY23-203;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000381;transcript_name=HG003_chrY_T0000381;gene_name=TTTY23;ID=exon:HG003_chrY_T0000381:3;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5878023	5878217	.	-	.	source_transcript=ENST00000728298.1;source_transcript_name=TTTY23-203;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000381;transcript_name=HG003_chrY_T0000381;gene_name=TTTY23;ID=intron:HG003_chrY_T0000381:3;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5878218	5878340	.	-	.	source_transcript=ENST00000728298.1;source_transcript_name=TTTY23-203;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000381;transcript_name=HG003_chrY_T0000381;gene_name=TTTY23;ID=exon:HG003_chrY_T0000381:4;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5878341	5880284	.	-	.	source_transcript=ENST00000728298.1;source_transcript_name=TTTY23-203;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000381;transcript_name=HG003_chrY_T0000381;gene_name=TTTY23;ID=intron:HG003_chrY_T0000381:4;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5880285	5880448	.	-	.	source_transcript=ENST00000728298.1;source_transcript_name=TTTY23-203;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000381;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000381;transcript_name=HG003_chrY_T0000381;gene_name=TTTY23;ID=exon:HG003_chrY_T0000381:5;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5875822	5880448	1000	-	.	source_transcript=ENST00000728299.1;source_transcript_name=TTTY23-204;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728299.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_G0000090;transcript_name=HG003_chrY_T0000382;gene_name=TTTY23;ID=HG003_chrY_T0000382;Name=TTTY23
HG003_chrY	CAT	exon	5875822	5876240	.	-	.	source_transcript=ENST00000728299.1;source_transcript_name=TTTY23-204;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000382;transcript_name=HG003_chrY_T0000382;gene_name=TTTY23;ID=exon:HG003_chrY_T0000382:0;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5876241	5876792	.	-	.	source_transcript=ENST00000728299.1;source_transcript_name=TTTY23-204;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000382;transcript_name=HG003_chrY_T0000382;gene_name=TTTY23;ID=intron:HG003_chrY_T0000382:0;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5876793	5876900	.	-	.	source_transcript=ENST00000728299.1;source_transcript_name=TTTY23-204;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000382;transcript_name=HG003_chrY_T0000382;gene_name=TTTY23;ID=exon:HG003_chrY_T0000382:1;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5876901	5877673	.	-	.	source_transcript=ENST00000728299.1;source_transcript_name=TTTY23-204;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000382;transcript_name=HG003_chrY_T0000382;gene_name=TTTY23;ID=intron:HG003_chrY_T0000382:1;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5877674	5877819	.	-	.	source_transcript=ENST00000728299.1;source_transcript_name=TTTY23-204;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000382;transcript_name=HG003_chrY_T0000382;gene_name=TTTY23;ID=exon:HG003_chrY_T0000382:2;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5877820	5877932	.	-	.	source_transcript=ENST00000728299.1;source_transcript_name=TTTY23-204;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000382;transcript_name=HG003_chrY_T0000382;gene_name=TTTY23;ID=intron:HG003_chrY_T0000382:2;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5877933	5878022	.	-	.	source_transcript=ENST00000728299.1;source_transcript_name=TTTY23-204;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000382;transcript_name=HG003_chrY_T0000382;gene_name=TTTY23;ID=exon:HG003_chrY_T0000382:3;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5878023	5880284	.	-	.	source_transcript=ENST00000728299.1;source_transcript_name=TTTY23-204;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000382;transcript_name=HG003_chrY_T0000382;gene_name=TTTY23;ID=intron:HG003_chrY_T0000382:3;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5880285	5880448	.	-	.	source_transcript=ENST00000728299.1;source_transcript_name=TTTY23-204;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000382;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000382;transcript_name=HG003_chrY_T0000382;gene_name=TTTY23;ID=exon:HG003_chrY_T0000382:4;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5876825	5877989	1000	-	.	source_transcript=ENST00000452889.1;source_transcript_name=TTTY23-201;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452889.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_G0000090;transcript_name=HG003_chrY_T0000383;gene_name=TTTY23;ID=HG003_chrY_T0000383;Name=TTTY23
HG003_chrY	CAT	exon	5876825	5877133	.	-	.	source_transcript=ENST00000452889.1;source_transcript_name=TTTY23-201;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452889.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000383;transcript_name=HG003_chrY_T0000383;gene_name=TTTY23;ID=exon:HG003_chrY_T0000383:0;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5877134	5877673	.	-	.	source_transcript=ENST00000452889.1;source_transcript_name=TTTY23-201;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452889.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000383;transcript_name=HG003_chrY_T0000383;gene_name=TTTY23;ID=intron:HG003_chrY_T0000383:0;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5877674	5877819	.	-	.	source_transcript=ENST00000452889.1;source_transcript_name=TTTY23-201;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452889.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000383;transcript_name=HG003_chrY_T0000383;gene_name=TTTY23;ID=exon:HG003_chrY_T0000383:1;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5877820	5877932	.	-	.	source_transcript=ENST00000452889.1;source_transcript_name=TTTY23-201;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452889.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000383;transcript_name=HG003_chrY_T0000383;gene_name=TTTY23;ID=intron:HG003_chrY_T0000383:1;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5877933	5877989	.	-	.	source_transcript=ENST00000452889.1;source_transcript_name=TTTY23-201;source_gene=ENSG00000239225.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000239225.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452889.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23;transcript_id=HG003_chrY_T0000383;gene_id=HG003_chrY_G0000090;Parent=HG003_chrY_T0000383;transcript_name=HG003_chrY_T0000383;gene_name=TTTY23;ID=exon:HG003_chrY_T0000383:2;Name=TTTY23;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5880648	5883192	.	+	.	source_gene_common_name=TSPY13P;source_gene=ENSG00000187657.6;gene_id=HG003_chrY_G0000091;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY13P;gene_sources=liftoff;ID=HG003_chrY_G0000091;Name=TSPY13P
HG003_chrY	CAT	transcript	5880648	5883192	1000	+	.	source_transcript=ENST00000338964.6;source_transcript_name=TSPY13P-201;source_gene=ENSG00000187657.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000187657.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000338964.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000338964.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY13P;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_G0000091;transcript_name=HG003_chrY_T0000384;gene_name=TSPY13P;ID=HG003_chrY_T0000384;Name=TSPY13P
HG003_chrY	CAT	exon	5880648	5881124	.	+	.	source_transcript=ENST00000338964.6;source_transcript_name=TSPY13P-201;source_gene=ENSG00000187657.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000187657.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000338964.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000338964.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY13P;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000384;transcript_name=HG003_chrY_T0000384;gene_name=TSPY13P;ID=exon:HG003_chrY_T0000384:0;Name=TSPY13P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881125	5881730	.	+	.	source_transcript=ENST00000338964.6;source_transcript_name=TSPY13P-201;source_gene=ENSG00000187657.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000187657.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000338964.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000338964.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY13P;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000384;transcript_name=HG003_chrY_T0000384;gene_name=TSPY13P;ID=intron:HG003_chrY_T0000384:0;Name=TSPY13P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881731	5881808	.	+	.	source_transcript=ENST00000338964.6;source_transcript_name=TSPY13P-201;source_gene=ENSG00000187657.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000187657.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000338964.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000338964.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY13P;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000384;transcript_name=HG003_chrY_T0000384;gene_name=TSPY13P;ID=exon:HG003_chrY_T0000384:1;Name=TSPY13P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881809	5881936	.	+	.	source_transcript=ENST00000338964.6;source_transcript_name=TSPY13P-201;source_gene=ENSG00000187657.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000187657.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000338964.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000338964.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY13P;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000384;transcript_name=HG003_chrY_T0000384;gene_name=TSPY13P;ID=intron:HG003_chrY_T0000384:1;Name=TSPY13P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881937	5882047	.	+	.	source_transcript=ENST00000338964.6;source_transcript_name=TSPY13P-201;source_gene=ENSG00000187657.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000187657.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000338964.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000338964.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY13P;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000384;transcript_name=HG003_chrY_T0000384;gene_name=TSPY13P;ID=exon:HG003_chrY_T0000384:2;Name=TSPY13P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882048	5882146	.	+	.	source_transcript=ENST00000338964.6;source_transcript_name=TSPY13P-201;source_gene=ENSG00000187657.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000187657.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000338964.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000338964.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY13P;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000384;transcript_name=HG003_chrY_T0000384;gene_name=TSPY13P;ID=intron:HG003_chrY_T0000384:2;Name=TSPY13P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5882147	5882289	.	+	.	source_transcript=ENST00000338964.6;source_transcript_name=TSPY13P-201;source_gene=ENSG00000187657.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000187657.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000338964.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000338964.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY13P;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000384;transcript_name=HG003_chrY_T0000384;gene_name=TSPY13P;ID=exon:HG003_chrY_T0000384:3;Name=TSPY13P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882290	5882398	.	+	.	source_transcript=ENST00000338964.6;source_transcript_name=TSPY13P-201;source_gene=ENSG00000187657.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000187657.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000338964.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000338964.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY13P;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000384;transcript_name=HG003_chrY_T0000384;gene_name=TSPY13P;ID=intron:HG003_chrY_T0000384:3;Name=TSPY13P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5882399	5882483	.	+	.	source_transcript=ENST00000338964.6;source_transcript_name=TSPY13P-201;source_gene=ENSG00000187657.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000187657.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000338964.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000338964.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY13P;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000384;transcript_name=HG003_chrY_T0000384;gene_name=TSPY13P;ID=exon:HG003_chrY_T0000384:4;Name=TSPY13P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882484	5883172	.	+	.	source_transcript=ENST00000338964.6;source_transcript_name=TSPY13P-201;source_gene=ENSG00000187657.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000187657.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000338964.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000338964.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY13P;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000384;transcript_name=HG003_chrY_T0000384;gene_name=TSPY13P;ID=intron:HG003_chrY_T0000384:4;Name=TSPY13P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5883173	5883192	.	+	.	source_transcript=ENST00000338964.6;source_transcript_name=TSPY13P-201;source_gene=ENSG00000187657.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000187657.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000338964.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000338964.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY13P;transcript_id=HG003_chrY_T0000384;gene_id=HG003_chrY_G0000091;Parent=HG003_chrY_T0000384;transcript_name=HG003_chrY_T0000384;gene_name=TSPY13P;ID=exon:HG003_chrY_T0000384:5;Name=TSPY13P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5880650	5890001	.	+	.	source_gene_common_name=ENSG00000309435;source_gene=ENSG00000309435.1;gene_id=HG003_chrY_G0000092;gene_biotype=lncRNA;gene_name=ENSG00000309435;gene_sources=liftoff;ID=HG003_chrY_G0000092;Name=ENSG00000309435
HG003_chrY	CAT	transcript	5880650	5889278	1000	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=HG003_chrY_T0000385;Name=ENSG00000309435
HG003_chrY	CAT	exon	5880650	5880734	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000385:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5880735	5881157	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000385:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881158	5881400	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000385:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881401	5881748	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000385:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881749	5881808	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000385:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881809	5881936	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000385:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881937	5882047	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000385:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882048	5882396	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000385:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5882397	5882519	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000385:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882520	5883172	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000385:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5883173	5883186	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000385:5;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5883187	5884608	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000385:5;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5884609	5884704	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000385:6;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5884705	5888662	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000385:6;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5888663	5889278	.	+	.	source_transcript=ENST00000841129.1;source_transcript_name=ENST00000841129;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841129.1;transcript_score=286.313;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000385;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000385;transcript_name=HG003_chrY_T0000385;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000385:7;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5880657	5890001	1000	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=HG003_chrY_T0000386;Name=ENSG00000309435
HG003_chrY	CAT	exon	5880657	5881124	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000386:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881125	5881730	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000386:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881731	5881808	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000386:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881809	5881936	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000386:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881937	5882047	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000386:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882048	5882396	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000386:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5882397	5882519	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000386:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882520	5883172	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000386:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5883173	5883186	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000386:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5883187	5884608	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000386:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5884609	5884704	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000386:5;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5884705	5888662	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000386:5;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5888663	5890001	.	+	.	source_transcript=ENST00000841128.1;source_transcript_name=ENST00000841128;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841128.1;transcript_score=284.9962857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000386;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000386;transcript_name=HG003_chrY_T0000386;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000386:6;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5880657	5889278	1000	+	.	source_transcript=ENST00000841130.1;source_transcript_name=ENST00000841130;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841130.1;transcript_score=273.473;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=HG003_chrY_T0000387;gene_name=ENSG00000309435;ID=HG003_chrY_T0000387;Name=ENSG00000309435
HG003_chrY	CAT	exon	5880657	5880734	.	+	.	source_transcript=ENST00000841130.1;source_transcript_name=ENST00000841130;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841130.1;transcript_score=273.473;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000387;transcript_name=HG003_chrY_T0000387;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000387:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5880735	5881157	.	+	.	source_transcript=ENST00000841130.1;source_transcript_name=ENST00000841130;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841130.1;transcript_score=273.473;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000387;transcript_name=HG003_chrY_T0000387;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000387:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881158	5881400	.	+	.	source_transcript=ENST00000841130.1;source_transcript_name=ENST00000841130;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841130.1;transcript_score=273.473;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000387;transcript_name=HG003_chrY_T0000387;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000387:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881401	5881936	.	+	.	source_transcript=ENST00000841130.1;source_transcript_name=ENST00000841130;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841130.1;transcript_score=273.473;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000387;transcript_name=HG003_chrY_T0000387;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000387:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881937	5882047	.	+	.	source_transcript=ENST00000841130.1;source_transcript_name=ENST00000841130;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841130.1;transcript_score=273.473;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000387;transcript_name=HG003_chrY_T0000387;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000387:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882048	5888662	.	+	.	source_transcript=ENST00000841130.1;source_transcript_name=ENST00000841130;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841130.1;transcript_score=273.473;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000387;transcript_name=HG003_chrY_T0000387;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000387:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5888663	5889278	.	+	.	source_transcript=ENST00000841130.1;source_transcript_name=ENST00000841130;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841130.1;transcript_score=273.473;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000387;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000387;transcript_name=HG003_chrY_T0000387;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000387:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5880659	5883725	1000	+	.	source_transcript=ENST00000841137.1;source_transcript_name=ENST00000841137;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841137.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=HG003_chrY_T0000388;gene_name=ENSG00000309435;ID=HG003_chrY_T0000388;Name=ENSG00000309435
HG003_chrY	CAT	exon	5880659	5880734	.	+	.	source_transcript=ENST00000841137.1;source_transcript_name=ENST00000841137;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841137.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000388;transcript_name=HG003_chrY_T0000388;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000388:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5880735	5881157	.	+	.	source_transcript=ENST00000841137.1;source_transcript_name=ENST00000841137;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841137.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000388;transcript_name=HG003_chrY_T0000388;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000388:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881158	5881400	.	+	.	source_transcript=ENST00000841137.1;source_transcript_name=ENST00000841137;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841137.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000388;transcript_name=HG003_chrY_T0000388;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000388:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881401	5881748	.	+	.	source_transcript=ENST00000841137.1;source_transcript_name=ENST00000841137;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841137.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000388;transcript_name=HG003_chrY_T0000388;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000388:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881749	5881808	.	+	.	source_transcript=ENST00000841137.1;source_transcript_name=ENST00000841137;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841137.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000388;transcript_name=HG003_chrY_T0000388;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000388:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881809	5881936	.	+	.	source_transcript=ENST00000841137.1;source_transcript_name=ENST00000841137;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841137.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000388;transcript_name=HG003_chrY_T0000388;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000388:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881937	5882047	.	+	.	source_transcript=ENST00000841137.1;source_transcript_name=ENST00000841137;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841137.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000388;transcript_name=HG003_chrY_T0000388;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000388:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882048	5883172	.	+	.	source_transcript=ENST00000841137.1;source_transcript_name=ENST00000841137;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841137.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000388;transcript_name=HG003_chrY_T0000388;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000388:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5883173	5883725	.	+	.	source_transcript=ENST00000841137.1;source_transcript_name=ENST00000841137;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841137.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000388;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000388;transcript_name=HG003_chrY_T0000388;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000388:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5880665	5889278	1000	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=HG003_chrY_T0000389;Name=ENSG00000309435
HG003_chrY	CAT	exon	5880665	5880734	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000389:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5880735	5881157	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000389:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881158	5881400	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000389:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881401	5881748	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000389:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881749	5881808	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000389:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881809	5881936	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000389:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881937	5882047	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000389:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882048	5882396	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000389:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5882397	5882519	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000389:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882520	5883172	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000389:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5883173	5883186	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000389:5;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5883187	5884589	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000389:5;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5884590	5884843	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000389:6;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5884844	5888662	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000389:6;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5888663	5889278	.	+	.	source_transcript=ENST00000841132.1;source_transcript_name=ENST00000841132;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841132.1;transcript_score=286.293;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000389;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000389;transcript_name=HG003_chrY_T0000389;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000389:7;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5880674	5883724	1000	+	.	source_transcript=ENST00000841138.1;source_transcript_name=ENST00000841138;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841138.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=HG003_chrY_T0000390;gene_name=ENSG00000309435;ID=HG003_chrY_T0000390;Name=ENSG00000309435
HG003_chrY	CAT	exon	5880674	5880734	.	+	.	source_transcript=ENST00000841138.1;source_transcript_name=ENST00000841138;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841138.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000390;transcript_name=HG003_chrY_T0000390;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000390:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5880735	5881157	.	+	.	source_transcript=ENST00000841138.1;source_transcript_name=ENST00000841138;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841138.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000390;transcript_name=HG003_chrY_T0000390;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000390:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881158	5881400	.	+	.	source_transcript=ENST00000841138.1;source_transcript_name=ENST00000841138;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841138.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000390;transcript_name=HG003_chrY_T0000390;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000390:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881401	5881936	.	+	.	source_transcript=ENST00000841138.1;source_transcript_name=ENST00000841138;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841138.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000390;transcript_name=HG003_chrY_T0000390;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000390:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881937	5882047	.	+	.	source_transcript=ENST00000841138.1;source_transcript_name=ENST00000841138;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841138.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000390;transcript_name=HG003_chrY_T0000390;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000390:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882048	5883172	.	+	.	source_transcript=ENST00000841138.1;source_transcript_name=ENST00000841138;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841138.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000390;transcript_name=HG003_chrY_T0000390;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000390:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5883173	5883724	.	+	.	source_transcript=ENST00000841138.1;source_transcript_name=ENST00000841138;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841138.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000390;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000390;transcript_name=HG003_chrY_T0000390;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000390:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5880676	5889291	1000	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=HG003_chrY_T0000391;Name=ENSG00000309435
HG003_chrY	CAT	exon	5880676	5880734	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000391:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5880735	5881157	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000391:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881158	5881400	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000391:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881401	5881687	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000391:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881688	5881808	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000391:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881809	5881936	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000391:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881937	5882047	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000391:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882048	5882396	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000391:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5882397	5882519	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000391:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882520	5883172	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000391:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5883173	5883186	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000391:5;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5883187	5884608	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000391:5;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5884609	5884704	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000391:6;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5884705	5888662	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000391:6;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5888663	5889291	.	+	.	source_transcript=ENST00000841131.1;source_transcript_name=ENST00000841131;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841131.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841131.1;transcript_score=286.354;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000391;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000391;transcript_name=HG003_chrY_T0000391;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000391:7;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5880676	5889278	1000	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=HG003_chrY_T0000392;Name=ENSG00000309435
HG003_chrY	CAT	exon	5880676	5880734	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000392:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5880735	5881157	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000392:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881158	5881400	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000392:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881401	5881936	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000392:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881937	5882047	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000392:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882048	5882396	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000392:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5882397	5882519	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000392:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882520	5883172	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000392:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5883173	5883186	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000392:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5883187	5884608	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000392:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5884609	5884704	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000392:5;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5884705	5888662	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000392:5;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5888663	5889278	.	+	.	source_transcript=ENST00000841133.1;source_transcript_name=ENST00000841133;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841133.1;transcript_score=284.4472857142857;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000392;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000392;transcript_name=HG003_chrY_T0000392;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000392:6;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5880683	5885160	1000	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=HG003_chrY_T0000393;Name=ENSG00000309435
HG003_chrY	CAT	exon	5880683	5880734	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000393:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5880735	5881157	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000393:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881158	5881400	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000393:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881401	5881748	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000393:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881749	5881808	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000393:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881809	5881936	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000393:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881937	5882047	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000393:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882048	5882396	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000393:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5882397	5882519	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000393:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882520	5883172	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000393:4;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5883173	5883186	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000393:5;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5883187	5884608	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000393:5;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5884609	5885160	.	+	.	source_transcript=ENST00000841136.1;source_transcript_name=ENST00000841136;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841136.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000393;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000393;transcript_name=HG003_chrY_T0000393;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000393:6;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5880697	5889278	1000	+	.	source_transcript=ENST00000841134.1;source_transcript_name=ENST00000841134;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841134.1;transcript_score=273.946;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=HG003_chrY_T0000394;gene_name=ENSG00000309435;ID=HG003_chrY_T0000394;Name=ENSG00000309435
HG003_chrY	CAT	exon	5880697	5881124	.	+	.	source_transcript=ENST00000841134.1;source_transcript_name=ENST00000841134;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841134.1;transcript_score=273.946;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000394;transcript_name=HG003_chrY_T0000394;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000394:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881125	5881730	.	+	.	source_transcript=ENST00000841134.1;source_transcript_name=ENST00000841134;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841134.1;transcript_score=273.946;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000394;transcript_name=HG003_chrY_T0000394;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000394:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881731	5881808	.	+	.	source_transcript=ENST00000841134.1;source_transcript_name=ENST00000841134;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841134.1;transcript_score=273.946;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000394;transcript_name=HG003_chrY_T0000394;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000394:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881809	5881936	.	+	.	source_transcript=ENST00000841134.1;source_transcript_name=ENST00000841134;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841134.1;transcript_score=273.946;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000394;transcript_name=HG003_chrY_T0000394;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000394:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881937	5882047	.	+	.	source_transcript=ENST00000841134.1;source_transcript_name=ENST00000841134;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841134.1;transcript_score=273.946;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000394;transcript_name=HG003_chrY_T0000394;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000394:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882048	5888662	.	+	.	source_transcript=ENST00000841134.1;source_transcript_name=ENST00000841134;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841134.1;transcript_score=273.946;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000394;transcript_name=HG003_chrY_T0000394;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000394:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5888663	5889278	.	+	.	source_transcript=ENST00000841134.1;source_transcript_name=ENST00000841134;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841134.1;transcript_score=273.946;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000394;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000394;transcript_name=HG003_chrY_T0000394;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000394:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5881278	5889278	1000	+	.	source_transcript=ENST00000841135.1;source_transcript_name=ENST00000841135;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841135.1;transcript_score=299.121;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_G0000092;transcript_name=HG003_chrY_T0000395;gene_name=ENSG00000309435;ID=HG003_chrY_T0000395;Name=ENSG00000309435
HG003_chrY	CAT	exon	5881278	5881400	.	+	.	source_transcript=ENST00000841135.1;source_transcript_name=ENST00000841135;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841135.1;transcript_score=299.121;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000395;transcript_name=HG003_chrY_T0000395;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000395:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881401	5881748	.	+	.	source_transcript=ENST00000841135.1;source_transcript_name=ENST00000841135;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841135.1;transcript_score=299.121;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000395;transcript_name=HG003_chrY_T0000395;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000395:0;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881749	5881808	.	+	.	source_transcript=ENST00000841135.1;source_transcript_name=ENST00000841135;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841135.1;transcript_score=299.121;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000395;transcript_name=HG003_chrY_T0000395;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000395:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5881809	5881936	.	+	.	source_transcript=ENST00000841135.1;source_transcript_name=ENST00000841135;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841135.1;transcript_score=299.121;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000395;transcript_name=HG003_chrY_T0000395;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000395:1;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5881937	5882047	.	+	.	source_transcript=ENST00000841135.1;source_transcript_name=ENST00000841135;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841135.1;transcript_score=299.121;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000395;transcript_name=HG003_chrY_T0000395;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000395:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5882048	5888662	.	+	.	source_transcript=ENST00000841135.1;source_transcript_name=ENST00000841135;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841135.1;transcript_score=299.121;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000395;transcript_name=HG003_chrY_T0000395;gene_name=ENSG00000309435;ID=intron:HG003_chrY_T0000395:2;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5888663	5889278	.	+	.	source_transcript=ENST00000841135.1;source_transcript_name=ENST00000841135;source_gene=ENSG00000309435.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309435.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000841135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000841135.1;transcript_score=299.121;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309435;transcript_id=HG003_chrY_T0000395;gene_id=HG003_chrY_G0000092;Parent=HG003_chrY_T0000395;transcript_name=HG003_chrY_T0000395;gene_name=ENSG00000309435;ID=exon:HG003_chrY_T0000395:3;Name=ENSG00000309435;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5887642	5888128	.	-	.	source_gene_common_name=ENSG00000275352;source_gene=ENSG00000275352.1;alternative_source_transcripts=ENST00000613408.1,ENST00000613408.1;gene_id=HG003_chrY_G0000093;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000275352;gene_sources=liftoff;ID=HG003_chrY_G0000093;Name=ENSG00000275352
HG003_chrY	CAT	transcript	5887642	5888128	1000	-	.	source_transcript=ENST00000613408.1;source_transcript_name=ENST00000613408;source_gene=ENSG00000275352.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275352.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613408.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613408.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275352;alternative_source_transcripts=ENST00000613408.1,ENST00000613408.1;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_G0000093;transcript_name=HG003_chrY_T0000396;gene_name=ENSG00000275352;ID=HG003_chrY_T0000396;Name=ENSG00000275352
HG003_chrY	CAT	exon	5887642	5887724	.	-	.	source_transcript=ENST00000613408.1;source_transcript_name=ENST00000613408;source_gene=ENSG00000275352.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275352.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613408.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613408.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275352;alternative_source_transcripts=ENST00000613408.1,ENST00000613408.1;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_T0000396;transcript_name=HG003_chrY_T0000396;gene_name=ENSG00000275352;ID=exon:HG003_chrY_T0000396:0;Name=ENSG00000275352;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5887725	5887830	.	-	.	source_transcript=ENST00000613408.1;source_transcript_name=ENST00000613408;source_gene=ENSG00000275352.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275352.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613408.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613408.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275352;alternative_source_transcripts=ENST00000613408.1,ENST00000613408.1;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_T0000396;transcript_name=HG003_chrY_T0000396;gene_name=ENSG00000275352;ID=intron:HG003_chrY_T0000396:0;Name=ENSG00000275352;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5887831	5887975	.	-	.	source_transcript=ENST00000613408.1;source_transcript_name=ENST00000613408;source_gene=ENSG00000275352.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275352.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613408.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613408.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275352;alternative_source_transcripts=ENST00000613408.1,ENST00000613408.1;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_T0000396;transcript_name=HG003_chrY_T0000396;gene_name=ENSG00000275352;ID=exon:HG003_chrY_T0000396:1;Name=ENSG00000275352;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5887976	5888064	.	-	.	source_transcript=ENST00000613408.1;source_transcript_name=ENST00000613408;source_gene=ENSG00000275352.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275352.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613408.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613408.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275352;alternative_source_transcripts=ENST00000613408.1,ENST00000613408.1;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_T0000396;transcript_name=HG003_chrY_T0000396;gene_name=ENSG00000275352;ID=intron:HG003_chrY_T0000396:1;Name=ENSG00000275352;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5888065	5888128	.	-	.	source_transcript=ENST00000613408.1;source_transcript_name=ENST00000613408;source_gene=ENSG00000275352.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275352.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613408.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613408.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275352;alternative_source_transcripts=ENST00000613408.1,ENST00000613408.1;transcript_id=HG003_chrY_T0000396;gene_id=HG003_chrY_G0000093;Parent=HG003_chrY_T0000396;transcript_name=HG003_chrY_T0000396;gene_name=ENSG00000275352;ID=exon:HG003_chrY_T0000396:2;Name=ENSG00000275352;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5916400	5917517	.	-	.	source_gene_common_name=TSPY18P;source_gene=ENSG00000231874.3;alternative_source_transcripts=ENST00000418461.1;gene_id=HG003_chrY_G0000094;gene_biotype=unprocessed_pseudogene;gene_name=TSPY18P;gene_sources=liftoff;ID=HG003_chrY_G0000094;Name=TSPY18P
HG003_chrY	CAT	transcript	5916400	5917517	1000	-	.	source_transcript=ENST00000441642.1;source_transcript_name=TSPY18P-201;source_gene=ENSG00000231874.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231874.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000441642.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441642.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY18P;alternative_source_transcripts=ENST00000418461.1;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_G0000094;transcript_name=HG003_chrY_T0000397;gene_name=TSPY18P;ID=HG003_chrY_T0000397;Name=TSPY18P
HG003_chrY	CAT	exon	5916400	5916432	.	-	.	source_transcript=ENST00000441642.1;source_transcript_name=TSPY18P-201;source_gene=ENSG00000231874.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231874.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000441642.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441642.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY18P;alternative_source_transcripts=ENST00000418461.1;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000397;transcript_name=HG003_chrY_T0000397;gene_name=TSPY18P;ID=exon:HG003_chrY_T0000397:0;Name=TSPY18P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5916433	5917041	.	-	.	source_transcript=ENST00000441642.1;source_transcript_name=TSPY18P-201;source_gene=ENSG00000231874.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231874.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000441642.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441642.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY18P;alternative_source_transcripts=ENST00000418461.1;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000397;transcript_name=HG003_chrY_T0000397;gene_name=TSPY18P;ID=intron:HG003_chrY_T0000397:0;Name=TSPY18P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5917042	5917517	.	-	.	source_transcript=ENST00000441642.1;source_transcript_name=TSPY18P-201;source_gene=ENSG00000231874.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231874.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000441642.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441642.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY18P;alternative_source_transcripts=ENST00000418461.1;transcript_id=HG003_chrY_T0000397;gene_id=HG003_chrY_G0000094;Parent=HG003_chrY_T0000397;transcript_name=HG003_chrY_T0000397;gene_name=TSPY18P;ID=exon:HG003_chrY_T0000397:1;Name=TSPY18P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5918479	5918719	.	+	.	source_gene_common_name=ENSG00000274445;source_gene=ENSG00000274445.1;gene_id=HG003_chrY_G0000095;gene_biotype=processed_pseudogene;gene_name=ENSG00000274445;gene_sources=liftoff;ID=HG003_chrY_G0000095;Name=ENSG00000274445
HG003_chrY	CAT	transcript	5918479	5918719	1000	+	.	source_transcript=ENST00000612764.1;source_transcript_name=ENST00000612764;source_gene=ENSG00000274445.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274445.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000612764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000612764.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274445;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000095;Parent=HG003_chrY_G0000095;transcript_name=HG003_chrY_T0000398;gene_name=ENSG00000274445;ID=HG003_chrY_T0000398;Name=ENSG00000274445
HG003_chrY	CAT	exon	5918479	5918719	.	+	.	source_transcript=ENST00000612764.1;source_transcript_name=ENST00000612764;source_gene=ENSG00000274445.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274445.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000612764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000612764.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274445;transcript_id=HG003_chrY_T0000398;gene_id=HG003_chrY_G0000095;Parent=HG003_chrY_T0000398;transcript_name=HG003_chrY_T0000398;gene_name=ENSG00000274445;ID=exon:HG003_chrY_T0000398:0;Name=ENSG00000274445;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5928634	5956103	.	+	.	source_gene_common_name=ENSG00000310196;source_gene=ENSG00000310196.1;gene_id=HG003_chrY_G0000096;gene_biotype=lncRNA;gene_name=ENSG00000310196;gene_sources=liftoff;ID=HG003_chrY_G0000096;Name=ENSG00000310196
HG003_chrY	CAT	transcript	5928634	5956103	1000	+	.	source_transcript=ENST00000848078.1;source_transcript_name=ENST00000848078;source_gene=ENSG00000310196.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310196.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848078.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310196;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_G0000096;transcript_name=HG003_chrY_T0000399;gene_name=ENSG00000310196;ID=HG003_chrY_T0000399;Name=ENSG00000310196
HG003_chrY	CAT	exon	5928634	5929112	.	+	.	source_transcript=ENST00000848078.1;source_transcript_name=ENST00000848078;source_gene=ENSG00000310196.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310196.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848078.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310196;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000399;transcript_name=HG003_chrY_T0000399;gene_name=ENSG00000310196;ID=exon:HG003_chrY_T0000399:0;Name=ENSG00000310196;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5929113	5951184	.	+	.	source_transcript=ENST00000848078.1;source_transcript_name=ENST00000848078;source_gene=ENSG00000310196.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310196.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848078.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310196;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000399;transcript_name=HG003_chrY_T0000399;gene_name=ENSG00000310196;ID=intron:HG003_chrY_T0000399:0;Name=ENSG00000310196;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5951185	5951334	.	+	.	source_transcript=ENST00000848078.1;source_transcript_name=ENST00000848078;source_gene=ENSG00000310196.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310196.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848078.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310196;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000399;transcript_name=HG003_chrY_T0000399;gene_name=ENSG00000310196;ID=exon:HG003_chrY_T0000399:1;Name=ENSG00000310196;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5951335	5954970	.	+	.	source_transcript=ENST00000848078.1;source_transcript_name=ENST00000848078;source_gene=ENSG00000310196.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310196.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848078.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310196;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000399;transcript_name=HG003_chrY_T0000399;gene_name=ENSG00000310196;ID=intron:HG003_chrY_T0000399:1;Name=ENSG00000310196;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5954971	5955052	.	+	.	source_transcript=ENST00000848078.1;source_transcript_name=ENST00000848078;source_gene=ENSG00000310196.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310196.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848078.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310196;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000399;transcript_name=HG003_chrY_T0000399;gene_name=ENSG00000310196;ID=exon:HG003_chrY_T0000399:2;Name=ENSG00000310196;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5955053	5955461	.	+	.	source_transcript=ENST00000848078.1;source_transcript_name=ENST00000848078;source_gene=ENSG00000310196.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310196.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848078.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310196;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000399;transcript_name=HG003_chrY_T0000399;gene_name=ENSG00000310196;ID=intron:HG003_chrY_T0000399:2;Name=ENSG00000310196;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5955462	5956103	.	+	.	source_transcript=ENST00000848078.1;source_transcript_name=ENST00000848078;source_gene=ENSG00000310196.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310196.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848078.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310196;transcript_id=HG003_chrY_T0000399;gene_id=HG003_chrY_G0000096;Parent=HG003_chrY_T0000399;transcript_name=HG003_chrY_T0000399;gene_name=ENSG00000310196;ID=exon:HG003_chrY_T0000399:3;Name=ENSG00000310196;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5940485	5955763	.	+	.	source_gene_common_name=RBMY2NP;source_gene=ENSG00000229208.1;gene_id=HG003_chrY_G0000097;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RBMY2NP;gene_sources=liftoff;ID=HG003_chrY_G0000097;Name=RBMY2NP
HG003_chrY	CAT	transcript	5940485	5955763	1000	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_G0000097;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=HG003_chrY_T0000400;Name=RBMY2NP
HG003_chrY	CAT	exon	5940485	5940662	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=exon:HG003_chrY_T0000400:0;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5940663	5951184	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=intron:HG003_chrY_T0000400:0;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5951185	5951334	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=exon:HG003_chrY_T0000400:1;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5951335	5953334	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=intron:HG003_chrY_T0000400:1;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5953335	5953434	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=exon:HG003_chrY_T0000400:2;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5953435	5954241	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=intron:HG003_chrY_T0000400:2;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5954242	5954352	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=exon:HG003_chrY_T0000400:3;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5954353	5954749	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=intron:HG003_chrY_T0000400:3;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5954750	5954860	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=exon:HG003_chrY_T0000400:4;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5954861	5954970	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=intron:HG003_chrY_T0000400:4;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5954971	5955046	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=exon:HG003_chrY_T0000400:5;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5955047	5955461	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=intron:HG003_chrY_T0000400:5;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5955462	5955763	.	+	.	source_transcript=ENST00000434454.1;source_transcript_name=RBMY2NP-201;source_gene=ENSG00000229208.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229208.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434454.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434454.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2NP;transcript_id=HG003_chrY_T0000400;gene_id=HG003_chrY_G0000097;Parent=HG003_chrY_T0000400;transcript_name=HG003_chrY_T0000400;gene_name=RBMY2NP;ID=exon:HG003_chrY_T0000400:6;Name=RBMY2NP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5953286	6002820	.	-	.	source_gene_common_name=TTTY22;source_gene=ENSG00000224075.2;gene_id=HG003_chrY_G0000098;gene_biotype=lncRNA;gene_name=TTTY22;gene_sources=liftoff;ID=HG003_chrY_G0000098;Name=TTTY22
HG003_chrY	CAT	transcript	5953286	6002820	1000	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_G0000098;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=HG003_chrY_T0000401;Name=TTTY22
HG003_chrY	CAT	exon	5953286	5953424	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=exon:HG003_chrY_T0000401:0;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5953425	5955574	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=intron:HG003_chrY_T0000401:0;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5955575	5955747	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=exon:HG003_chrY_T0000401:1;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5955748	5960021	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=intron:HG003_chrY_T0000401:1;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5960022	5960190	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=exon:HG003_chrY_T0000401:2;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5960191	5973791	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=intron:HG003_chrY_T0000401:2;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5973792	5973906	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=exon:HG003_chrY_T0000401:3;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5973907	5977082	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=intron:HG003_chrY_T0000401:3;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5977083	5977121	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=exon:HG003_chrY_T0000401:4;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5977122	5977806	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=intron:HG003_chrY_T0000401:4;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5977807	5977881	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=exon:HG003_chrY_T0000401:5;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5977882	5982306	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=intron:HG003_chrY_T0000401:5;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5982307	5982418	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=exon:HG003_chrY_T0000401:6;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5982419	5988980	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=intron:HG003_chrY_T0000401:6;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5988981	5989233	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=exon:HG003_chrY_T0000401:7;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5989234	5991774	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=intron:HG003_chrY_T0000401:7;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5991775	5991847	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=exon:HG003_chrY_T0000401:8;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5991848	5992223	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=intron:HG003_chrY_T0000401:8;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5992224	5992304	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=exon:HG003_chrY_T0000401:9;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5992305	5999740	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=intron:HG003_chrY_T0000401:9;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5999741	5999896	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=exon:HG003_chrY_T0000401:10;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5999897	6002614	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=intron:HG003_chrY_T0000401:10;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6002615	6002820	.	-	.	source_transcript=ENST00000650665.1;source_transcript_name=TTTY22-202;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650665.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650665.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000401;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000401;transcript_name=HG003_chrY_T0000401;gene_name=TTTY22;ID=exon:HG003_chrY_T0000401:11;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	5973947	5986041	1000	-	.	source_transcript=ENST00000445253.1;source_transcript_name=TTTY22-201;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000445253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445253.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_G0000098;transcript_name=HG003_chrY_T0000403;gene_name=TTTY22;ID=HG003_chrY_T0000403;Name=TTTY22
HG003_chrY	CAT	exon	5973947	5973992	.	-	.	source_transcript=ENST00000445253.1;source_transcript_name=TTTY22-201;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000445253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000403;transcript_name=HG003_chrY_T0000403;gene_name=TTTY22;ID=exon:HG003_chrY_T0000403:0;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5973993	5977082	.	-	.	source_transcript=ENST00000445253.1;source_transcript_name=TTTY22-201;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000445253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000403;transcript_name=HG003_chrY_T0000403;gene_name=TTTY22;ID=intron:HG003_chrY_T0000403:0;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5977083	5977121	.	-	.	source_transcript=ENST00000445253.1;source_transcript_name=TTTY22-201;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000445253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000403;transcript_name=HG003_chrY_T0000403;gene_name=TTTY22;ID=exon:HG003_chrY_T0000403:1;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5977122	5977806	.	-	.	source_transcript=ENST00000445253.1;source_transcript_name=TTTY22-201;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000445253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000403;transcript_name=HG003_chrY_T0000403;gene_name=TTTY22;ID=intron:HG003_chrY_T0000403:1;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5977807	5977881	.	-	.	source_transcript=ENST00000445253.1;source_transcript_name=TTTY22-201;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000445253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000403;transcript_name=HG003_chrY_T0000403;gene_name=TTTY22;ID=exon:HG003_chrY_T0000403:2;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5977882	5982306	.	-	.	source_transcript=ENST00000445253.1;source_transcript_name=TTTY22-201;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000445253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000403;transcript_name=HG003_chrY_T0000403;gene_name=TTTY22;ID=intron:HG003_chrY_T0000403:2;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5982307	5982418	.	-	.	source_transcript=ENST00000445253.1;source_transcript_name=TTTY22-201;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000445253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000403;transcript_name=HG003_chrY_T0000403;gene_name=TTTY22;ID=exon:HG003_chrY_T0000403:3;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5982419	5985886	.	-	.	source_transcript=ENST00000445253.1;source_transcript_name=TTTY22-201;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000445253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000403;transcript_name=HG003_chrY_T0000403;gene_name=TTTY22;ID=intron:HG003_chrY_T0000403:3;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5985887	5986041	.	-	.	source_transcript=ENST00000445253.1;source_transcript_name=TTTY22-201;source_gene=ENSG00000224075.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224075.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000445253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445253.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY22;transcript_id=HG003_chrY_T0000403;gene_id=HG003_chrY_G0000098;Parent=HG003_chrY_T0000403;transcript_name=HG003_chrY_T0000403;gene_name=TTTY22;ID=exon:HG003_chrY_T0000403:4;Name=TTTY22;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	5969671	5973877	.	-	.	source_gene_common_name=ENSG00000228379;source_gene=ENSG00000228379.1;alternative_source_transcripts=ENST00000439525.1;gene_id=HG003_chrY_G0000099;gene_biotype=lncRNA;gene_name=ENSG00000228379;gene_sources=liftoff;ID=HG003_chrY_G0000099;Name=ENSG00000228379
HG003_chrY	CAT	transcript	5969671	5973877	1000	-	.	source_transcript=ENST00000449963.1;source_transcript_name=ENST00000449963;source_gene=ENSG00000228379.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228379.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000449963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449963.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228379;alternative_source_transcripts=ENST00000439525.1;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_G0000099;transcript_name=HG003_chrY_T0000402;gene_name=ENSG00000228379;ID=HG003_chrY_T0000402;Name=ENSG00000228379
HG003_chrY	CAT	exon	5969671	5969889	.	-	.	source_transcript=ENST00000449963.1;source_transcript_name=ENST00000449963;source_gene=ENSG00000228379.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228379.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000449963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449963.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228379;alternative_source_transcripts=ENST00000439525.1;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_T0000402;transcript_name=HG003_chrY_T0000402;gene_name=ENSG00000228379;ID=exon:HG003_chrY_T0000402:0;Name=ENSG00000228379;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5969890	5971147	.	-	.	source_transcript=ENST00000449963.1;source_transcript_name=ENST00000449963;source_gene=ENSG00000228379.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228379.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000449963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449963.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228379;alternative_source_transcripts=ENST00000439525.1;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_T0000402;transcript_name=HG003_chrY_T0000402;gene_name=ENSG00000228379;ID=intron:HG003_chrY_T0000402:0;Name=ENSG00000228379;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5971148	5971290	.	-	.	source_transcript=ENST00000449963.1;source_transcript_name=ENST00000449963;source_gene=ENSG00000228379.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228379.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000449963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449963.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228379;alternative_source_transcripts=ENST00000439525.1;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_T0000402;transcript_name=HG003_chrY_T0000402;gene_name=ENSG00000228379;ID=exon:HG003_chrY_T0000402:1;Name=ENSG00000228379;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	5971291	5973791	.	-	.	source_transcript=ENST00000449963.1;source_transcript_name=ENST00000449963;source_gene=ENSG00000228379.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228379.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000449963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449963.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228379;alternative_source_transcripts=ENST00000439525.1;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_T0000402;transcript_name=HG003_chrY_T0000402;gene_name=ENSG00000228379;ID=intron:HG003_chrY_T0000402:1;Name=ENSG00000228379;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	5973792	5973877	.	-	.	source_transcript=ENST00000449963.1;source_transcript_name=ENST00000449963;source_gene=ENSG00000228379.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228379.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000449963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449963.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228379;alternative_source_transcripts=ENST00000439525.1;transcript_id=HG003_chrY_T0000402;gene_id=HG003_chrY_G0000099;Parent=HG003_chrY_T0000402;transcript_name=HG003_chrY_T0000402;gene_name=ENSG00000228379;ID=exon:HG003_chrY_T0000402:2;Name=ENSG00000228379;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6012863	6034036	.	+	.	source_gene_common_name=TTTY1;source_gene=ENSG00000129845.6;gene_id=HG003_chrY_G0000100;gene_biotype=lncRNA;gene_name=TTTY1;gene_sources=liftoff;ID=HG003_chrY_G0000100;Name=TTTY1
HG003_chrY	CAT	transcript	6012863	6028040	1000	+	.	source_transcript=ENST00000805314.1;source_transcript_name=TTTY1-202;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805314.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805314.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_G0000100;transcript_name=HG003_chrY_T0000404;gene_name=TTTY1;ID=HG003_chrY_T0000404;Name=TTTY1
HG003_chrY	CAT	exon	6012863	6013147	.	+	.	source_transcript=ENST00000805314.1;source_transcript_name=TTTY1-202;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805314.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805314.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000404;transcript_name=HG003_chrY_T0000404;gene_name=TTTY1;ID=exon:HG003_chrY_T0000404:0;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6013148	6023594	.	+	.	source_transcript=ENST00000805314.1;source_transcript_name=TTTY1-202;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805314.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805314.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000404;transcript_name=HG003_chrY_T0000404;gene_name=TTTY1;ID=intron:HG003_chrY_T0000404:0;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6023595	6023753	.	+	.	source_transcript=ENST00000805314.1;source_transcript_name=TTTY1-202;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805314.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805314.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000404;transcript_name=HG003_chrY_T0000404;gene_name=TTTY1;ID=exon:HG003_chrY_T0000404:1;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6023754	6027878	.	+	.	source_transcript=ENST00000805314.1;source_transcript_name=TTTY1-202;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805314.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805314.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000404;transcript_name=HG003_chrY_T0000404;gene_name=TTTY1;ID=intron:HG003_chrY_T0000404:1;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6027879	6028040	.	+	.	source_transcript=ENST00000805314.1;source_transcript_name=TTTY1-202;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000805314.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000805314.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;transcript_id=HG003_chrY_T0000404;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000404;transcript_name=HG003_chrY_T0000404;gene_name=TTTY1;ID=exon:HG003_chrY_T0000404:2;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6012903	6034036	1000	+	.	source_transcript=ENST00000250805.5;source_transcript_name=TTTY1-201;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250805.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250805.5;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=ENST00000250776.5,ENST00000250776.5;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_G0000100;transcript_name=HG003_chrY_T0000405;gene_name=TTTY1;ID=HG003_chrY_T0000405;Name=TTTY1
HG003_chrY	CAT	exon	6012903	6013147	.	+	.	source_transcript=ENST00000250805.5;source_transcript_name=TTTY1-201;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250805.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250805.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=ENST00000250776.5,ENST00000250776.5;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000405;transcript_name=HG003_chrY_T0000405;gene_name=TTTY1;ID=exon:HG003_chrY_T0000405:0;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6013148	6016571	.	+	.	source_transcript=ENST00000250805.5;source_transcript_name=TTTY1-201;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250805.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250805.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=ENST00000250776.5,ENST00000250776.5;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000405;transcript_name=HG003_chrY_T0000405;gene_name=TTTY1;ID=intron:HG003_chrY_T0000405:0;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6016572	6016731	.	+	.	source_transcript=ENST00000250805.5;source_transcript_name=TTTY1-201;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250805.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250805.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=ENST00000250776.5,ENST00000250776.5;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000405;transcript_name=HG003_chrY_T0000405;gene_name=TTTY1;ID=exon:HG003_chrY_T0000405:1;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6016732	6023594	.	+	.	source_transcript=ENST00000250805.5;source_transcript_name=TTTY1-201;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250805.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250805.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=ENST00000250776.5,ENST00000250776.5;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000405;transcript_name=HG003_chrY_T0000405;gene_name=TTTY1;ID=intron:HG003_chrY_T0000405:1;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6023595	6023703	.	+	.	source_transcript=ENST00000250805.5;source_transcript_name=TTTY1-201;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250805.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250805.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=ENST00000250776.5,ENST00000250776.5;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000405;transcript_name=HG003_chrY_T0000405;gene_name=TTTY1;ID=exon:HG003_chrY_T0000405:2;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6023704	6026059	.	+	.	source_transcript=ENST00000250805.5;source_transcript_name=TTTY1-201;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250805.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250805.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=ENST00000250776.5,ENST00000250776.5;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000405;transcript_name=HG003_chrY_T0000405;gene_name=TTTY1;ID=intron:HG003_chrY_T0000405:2;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6026060	6026197	.	+	.	source_transcript=ENST00000250805.5;source_transcript_name=TTTY1-201;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250805.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250805.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=ENST00000250776.5,ENST00000250776.5;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000405;transcript_name=HG003_chrY_T0000405;gene_name=TTTY1;ID=exon:HG003_chrY_T0000405:3;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6026198	6033778	.	+	.	source_transcript=ENST00000250805.5;source_transcript_name=TTTY1-201;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250805.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250805.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=ENST00000250776.5,ENST00000250776.5;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000405;transcript_name=HG003_chrY_T0000405;gene_name=TTTY1;ID=intron:HG003_chrY_T0000405:3;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033779	6034036	.	+	.	source_transcript=ENST00000250805.5;source_transcript_name=TTTY1-201;source_gene=ENSG00000129845.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129845.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250805.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250805.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1;alternative_source_transcripts=ENST00000250776.5,ENST00000250776.5;transcript_id=HG003_chrY_T0000405;gene_id=HG003_chrY_G0000100;Parent=HG003_chrY_T0000405;transcript_name=HG003_chrY_T0000405;gene_name=TTTY1;ID=exon:HG003_chrY_T0000405:4;Name=TTTY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6028531	6084564	.	-	.	source_gene_common_name=TTTY2B;source_gene=ENSG00000212856.7;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;gene_id=HG003_chrY_G0000101;gene_biotype=lncRNA;gene_name=TTTY2B;gene_sources=liftoff;ID=HG003_chrY_G0000101;Name=TTTY2B
HG003_chrY	CAT	transcript	6028531	6068119	1000	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=HG003_chrY_T0000406;Name=TTTY2B
HG003_chrY	CAT	exon	6028531	6029395	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000406:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000406:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000406:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6033845	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000406:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000406:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034615	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000406:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034616	6034843	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000406:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6042237	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000406:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6042238	6042324	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000406:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6042325	6042675	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000406:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6042676	6042780	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000406:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6042781	6044800	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000406:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6044801	6044878	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000406:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6044879	6051403	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000406:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6051404	6051614	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000406:7;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6051615	6051788	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000406:7;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6051789	6051876	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000406:8;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6051877	6067918	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000406:8;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6067919	6068119	.	-	.	source_transcript=ENST00000735423.1;source_transcript_name=TTTY2B-204;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735423.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735423.1,ENST00000735423.1;transcript_id=HG003_chrY_T0000406;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000406;transcript_name=HG003_chrY_T0000406;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000406:9;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6028531	6050924	1000	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=HG003_chrY_T0000407;Name=TTTY2B
HG003_chrY	CAT	exon	6028531	6029395	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000407:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000407:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000407:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6033845	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000407:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000407:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034694	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000407:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034695	6034843	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000407:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6042237	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000407:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6042238	6042324	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000407:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6042325	6042675	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000407:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6042676	6042780	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000407:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6042781	6044800	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000407:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6044801	6044878	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000407:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6044879	6050712	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000407:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6050713	6050924	.	-	.	source_transcript=ENST00000735425.1;source_transcript_name=TTTY2B-206;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735425.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735425.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735425.1,ENST00000735425.1;transcript_id=HG003_chrY_T0000407;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000407;transcript_name=HG003_chrY_T0000407;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000407:7;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6028531	6050923	1000	-	.	source_transcript=ENST00000735426.1;source_transcript_name=TTTY2B-207;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735426.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735426.1,ENST00000735426.1;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000408;gene_name=TTTY2B;ID=HG003_chrY_T0000408;Name=TTTY2B
HG003_chrY	CAT	exon	6028531	6029395	.	-	.	source_transcript=ENST00000735426.1;source_transcript_name=TTTY2B-207;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735426.1,ENST00000735426.1;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000408;transcript_name=HG003_chrY_T0000408;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000408:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000735426.1;source_transcript_name=TTTY2B-207;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735426.1,ENST00000735426.1;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000408;transcript_name=HG003_chrY_T0000408;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000408:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000735426.1;source_transcript_name=TTTY2B-207;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735426.1,ENST00000735426.1;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000408;transcript_name=HG003_chrY_T0000408;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000408:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6033845	.	-	.	source_transcript=ENST00000735426.1;source_transcript_name=TTTY2B-207;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735426.1,ENST00000735426.1;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000408;transcript_name=HG003_chrY_T0000408;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000408:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000735426.1;source_transcript_name=TTTY2B-207;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735426.1,ENST00000735426.1;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000408;transcript_name=HG003_chrY_T0000408;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000408:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034694	.	-	.	source_transcript=ENST00000735426.1;source_transcript_name=TTTY2B-207;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735426.1,ENST00000735426.1;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000408;transcript_name=HG003_chrY_T0000408;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000408:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034695	6034843	.	-	.	source_transcript=ENST00000735426.1;source_transcript_name=TTTY2B-207;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735426.1,ENST00000735426.1;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000408;transcript_name=HG003_chrY_T0000408;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000408:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6044800	.	-	.	source_transcript=ENST00000735426.1;source_transcript_name=TTTY2B-207;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735426.1,ENST00000735426.1;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000408;transcript_name=HG003_chrY_T0000408;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000408:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6044801	6044878	.	-	.	source_transcript=ENST00000735426.1;source_transcript_name=TTTY2B-207;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735426.1,ENST00000735426.1;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000408;transcript_name=HG003_chrY_T0000408;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000408:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6044879	6050712	.	-	.	source_transcript=ENST00000735426.1;source_transcript_name=TTTY2B-207;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735426.1,ENST00000735426.1;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000408;transcript_name=HG003_chrY_T0000408;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000408:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6050713	6050923	.	-	.	source_transcript=ENST00000735426.1;source_transcript_name=TTTY2B-207;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735426.1,ENST00000735426.1;transcript_id=HG003_chrY_T0000408;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000408;transcript_name=HG003_chrY_T0000408;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000408:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6028531	6050923	1000	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=HG003_chrY_T0000409;Name=TTTY2B
HG003_chrY	CAT	exon	6028531	6029395	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000409:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000409:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000409:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6030936	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000409:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030937	6031015	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000409:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6031016	6032648	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000409:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6032649	6032866	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000409:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6032867	6033229	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000409:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033230	6033324	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000409:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6033325	6033845	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000409:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000409:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034615	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000409:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034616	6034843	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000409:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6044800	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000409:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6044801	6044878	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000409:7;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6044879	6050718	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000409:7;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6050719	6050923	.	-	.	source_transcript=ENST00000735427.1;source_transcript_name=TTTY2B-208;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735427.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735427.1,ENST00000735427.1;transcript_id=HG003_chrY_T0000409;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000409;transcript_name=HG003_chrY_T0000409;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000409:8;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6028531	6050911	1000	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=HG003_chrY_T0000410;Name=TTTY2B
HG003_chrY	CAT	exon	6028531	6029395	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000410:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000410:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000410:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6030936	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000410:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030937	6031015	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000410:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6031016	6033845	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000410:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000410:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034694	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000410:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034695	6034843	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000410:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6042237	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000410:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6042238	6042324	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000410:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6042325	6044800	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000410:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6044801	6044878	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000410:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6044879	6050712	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000410:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6050713	6050911	.	-	.	source_transcript=ENST00000735428.1;source_transcript_name=TTTY2B-209;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735428.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735428.1,ENST00000735428.1;transcript_id=HG003_chrY_T0000410;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000410;transcript_name=HG003_chrY_T0000410;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000410:7;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6028531	6037092	1000	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=HG003_chrY_T0000411;Name=TTTY2B
HG003_chrY	CAT	exon	6028531	6029395	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000411:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000411:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000411:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6030936	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000411:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030937	6031015	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000411:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6031016	6032648	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000411:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6032649	6032866	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000411:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6032867	6033845	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000411:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000411:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034694	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000411:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034695	6034843	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000411:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6035135	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000411:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6035136	6035222	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000411:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6035223	6036955	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000411:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6036956	6037092	.	-	.	source_transcript=ENST00000735431.1;source_transcript_name=TTTY2B-212;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735431.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735431.1,ENST00000735431.1;transcript_id=HG003_chrY_T0000411;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000411;transcript_name=HG003_chrY_T0000411;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000411:7;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6028716	6046618	1000	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=HG003_chrY_T0000412;Name=TTTY2B
HG003_chrY	CAT	exon	6028716	6029395	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000412:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000412:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000412:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6030936	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000412:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030937	6031015	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000412:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6031016	6033845	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000412:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000412:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034694	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000412:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034695	6034843	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000412:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6042237	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000412:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6042238	6042324	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000412:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6042325	6044800	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000412:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6044801	6046618	.	-	.	source_transcript=ENST00000450591.1;source_transcript_name=TTTY2B-201;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450591.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450591.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000450591.1,ENST00000450591.1;transcript_id=HG003_chrY_T0000412;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000412;transcript_name=HG003_chrY_T0000412;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000412:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6028716	6068135	1000	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=HG003_chrY_T0000413;Name=TTTY2B
HG003_chrY	CAT	exon	6028716	6029395	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000413:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000413:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000413:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6030936	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000413:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030937	6031015	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000413:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6031016	6033845	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000413:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000413:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034694	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000413:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034695	6034843	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000413:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6044800	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000413:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6044801	6044878	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000413:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6044879	6051403	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000413:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6051404	6051614	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000413:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6051615	6067918	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000413:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6067919	6068135	.	-	.	source_transcript=ENST00000735424.1;source_transcript_name=TTTY2B-205;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735424.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735424.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735424.1,ENST00000735424.1;transcript_id=HG003_chrY_T0000413;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000413;transcript_name=HG003_chrY_T0000413;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000413:7;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6028716	6037097	1000	-	.	source_transcript=ENST00000735432.1;source_transcript_name=TTTY2B-213;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735432.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735432.1,ENST00000735432.1;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000414;gene_name=TTTY2B;ID=HG003_chrY_T0000414;Name=TTTY2B
HG003_chrY	CAT	exon	6028716	6029395	.	-	.	source_transcript=ENST00000735432.1;source_transcript_name=TTTY2B-213;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735432.1,ENST00000735432.1;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000414;transcript_name=HG003_chrY_T0000414;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000414:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000735432.1;source_transcript_name=TTTY2B-213;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735432.1,ENST00000735432.1;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000414;transcript_name=HG003_chrY_T0000414;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000414:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000735432.1;source_transcript_name=TTTY2B-213;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735432.1,ENST00000735432.1;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000414;transcript_name=HG003_chrY_T0000414;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000414:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6033845	.	-	.	source_transcript=ENST00000735432.1;source_transcript_name=TTTY2B-213;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735432.1,ENST00000735432.1;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000414;transcript_name=HG003_chrY_T0000414;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000414:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000735432.1;source_transcript_name=TTTY2B-213;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735432.1,ENST00000735432.1;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000414;transcript_name=HG003_chrY_T0000414;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000414:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034694	.	-	.	source_transcript=ENST00000735432.1;source_transcript_name=TTTY2B-213;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735432.1,ENST00000735432.1;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000414;transcript_name=HG003_chrY_T0000414;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000414:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034695	6034843	.	-	.	source_transcript=ENST00000735432.1;source_transcript_name=TTTY2B-213;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735432.1,ENST00000735432.1;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000414;transcript_name=HG003_chrY_T0000414;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000414:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6035135	.	-	.	source_transcript=ENST00000735432.1;source_transcript_name=TTTY2B-213;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735432.1,ENST00000735432.1;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000414;transcript_name=HG003_chrY_T0000414;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000414:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6035136	6035222	.	-	.	source_transcript=ENST00000735432.1;source_transcript_name=TTTY2B-213;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735432.1,ENST00000735432.1;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000414;transcript_name=HG003_chrY_T0000414;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000414:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6035223	6036961	.	-	.	source_transcript=ENST00000735432.1;source_transcript_name=TTTY2B-213;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735432.1,ENST00000735432.1;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000414;transcript_name=HG003_chrY_T0000414;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000414:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6036962	6037097	.	-	.	source_transcript=ENST00000735432.1;source_transcript_name=TTTY2B-213;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735432.1,ENST00000735432.1;transcript_id=HG003_chrY_T0000414;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000414;transcript_name=HG003_chrY_T0000414;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000414:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6028719	6084564	1000	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=HG003_chrY_T0000415;Name=TTTY2B
HG003_chrY	CAT	exon	6028719	6029395	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000415:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6033845	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000415:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034694	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000415:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034695	6034843	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6044800	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000415:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6044801	6044878	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6044879	6051403	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000415:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6051404	6051614	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6051615	6051788	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000415:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6051789	6051876	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6051877	6067918	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000415:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6067919	6068825	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:7;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6068826	6071809	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000415:7;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6071810	6072030	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:8;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6072031	6072965	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000415:8;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072966	6073133	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:9;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6073134	6074292	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000415:9;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6074293	6074474	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:10;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6074475	6078420	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000415:10;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6078421	6078559	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:11;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6078560	6083797	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000415:11;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6083798	6084564	.	-	.	source_transcript=ENST00000651733.2;source_transcript_name=TTTY2B-202;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651733.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651733.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000651733.2,ENST00000651733.2;transcript_id=HG003_chrY_T0000415;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000415;transcript_name=HG003_chrY_T0000415;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000415:12;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6028720	6050911	1000	-	.	source_transcript=ENST00000735429.1;source_transcript_name=TTTY2B-210;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735429.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735429.1,ENST00000735429.1;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000416;gene_name=TTTY2B;ID=HG003_chrY_T0000416;Name=TTTY2B
HG003_chrY	CAT	exon	6028720	6029395	.	-	.	source_transcript=ENST00000735429.1;source_transcript_name=TTTY2B-210;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735429.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735429.1,ENST00000735429.1;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000416;transcript_name=HG003_chrY_T0000416;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000416:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000735429.1;source_transcript_name=TTTY2B-210;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735429.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735429.1,ENST00000735429.1;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000416;transcript_name=HG003_chrY_T0000416;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000416:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000735429.1;source_transcript_name=TTTY2B-210;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735429.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735429.1,ENST00000735429.1;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000416;transcript_name=HG003_chrY_T0000416;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000416:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6033845	.	-	.	source_transcript=ENST00000735429.1;source_transcript_name=TTTY2B-210;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735429.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735429.1,ENST00000735429.1;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000416;transcript_name=HG003_chrY_T0000416;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000416:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000735429.1;source_transcript_name=TTTY2B-210;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735429.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735429.1,ENST00000735429.1;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000416;transcript_name=HG003_chrY_T0000416;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000416:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034615	.	-	.	source_transcript=ENST00000735429.1;source_transcript_name=TTTY2B-210;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735429.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735429.1,ENST00000735429.1;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000416;transcript_name=HG003_chrY_T0000416;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000416:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034616	6034843	.	-	.	source_transcript=ENST00000735429.1;source_transcript_name=TTTY2B-210;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735429.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735429.1,ENST00000735429.1;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000416;transcript_name=HG003_chrY_T0000416;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000416:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6044800	.	-	.	source_transcript=ENST00000735429.1;source_transcript_name=TTTY2B-210;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735429.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735429.1,ENST00000735429.1;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000416;transcript_name=HG003_chrY_T0000416;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000416:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6044801	6044878	.	-	.	source_transcript=ENST00000735429.1;source_transcript_name=TTTY2B-210;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735429.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735429.1,ENST00000735429.1;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000416;transcript_name=HG003_chrY_T0000416;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000416:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6044879	6050712	.	-	.	source_transcript=ENST00000735429.1;source_transcript_name=TTTY2B-210;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735429.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735429.1,ENST00000735429.1;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000416;transcript_name=HG003_chrY_T0000416;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000416:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6050713	6050911	.	-	.	source_transcript=ENST00000735429.1;source_transcript_name=TTTY2B-210;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735429.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735429.1,ENST00000735429.1;transcript_id=HG003_chrY_T0000416;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000416;transcript_name=HG003_chrY_T0000416;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000416:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6028720	6037082	1000	-	.	source_transcript=ENST00000735433.1;source_transcript_name=TTTY2B-214;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735433.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735433.1,ENST00000735433.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000417;gene_name=TTTY2B;ID=HG003_chrY_T0000417;Name=TTTY2B
HG003_chrY	CAT	exon	6028720	6029395	.	-	.	source_transcript=ENST00000735433.1;source_transcript_name=TTTY2B-214;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735433.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735433.1,ENST00000735433.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000417;transcript_name=HG003_chrY_T0000417;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000417:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000735433.1;source_transcript_name=TTTY2B-214;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735433.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735433.1,ENST00000735433.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000417;transcript_name=HG003_chrY_T0000417;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000417:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000735433.1;source_transcript_name=TTTY2B-214;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735433.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735433.1,ENST00000735433.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000417;transcript_name=HG003_chrY_T0000417;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000417:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6033845	.	-	.	source_transcript=ENST00000735433.1;source_transcript_name=TTTY2B-214;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735433.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735433.1,ENST00000735433.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000417;transcript_name=HG003_chrY_T0000417;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000417:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000735433.1;source_transcript_name=TTTY2B-214;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735433.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735433.1,ENST00000735433.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000417;transcript_name=HG003_chrY_T0000417;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000417:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034694	.	-	.	source_transcript=ENST00000735433.1;source_transcript_name=TTTY2B-214;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735433.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735433.1,ENST00000735433.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000417;transcript_name=HG003_chrY_T0000417;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000417:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034695	6034843	.	-	.	source_transcript=ENST00000735433.1;source_transcript_name=TTTY2B-214;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735433.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735433.1,ENST00000735433.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000417;transcript_name=HG003_chrY_T0000417;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000417:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6036955	.	-	.	source_transcript=ENST00000735433.1;source_transcript_name=TTTY2B-214;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735433.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735433.1,ENST00000735433.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000417;transcript_name=HG003_chrY_T0000417;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000417:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6036956	6037082	.	-	.	source_transcript=ENST00000735433.1;source_transcript_name=TTTY2B-214;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735433.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735433.1,ENST00000735433.1;transcript_id=HG003_chrY_T0000417;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000417;transcript_name=HG003_chrY_T0000417;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000417:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6029252	6050887	1000	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=HG003_chrY_T0000418;Name=TTTY2B
HG003_chrY	CAT	exon	6029252	6029395	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000418:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6029396	6030618	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000418:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030619	6030816	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000418:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6030817	6030936	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000418:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6030937	6031015	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000418:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6031016	6033845	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000418:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6033846	6034002	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000418:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034694	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000418:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034695	6034843	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000418:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6044800	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000418:4;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6044801	6044878	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000418:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6044879	6050712	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000418:5;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6050713	6050887	.	-	.	source_transcript=ENST00000735430.1;source_transcript_name=TTTY2B-211;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735430.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735430.1,ENST00000735430.1;transcript_id=HG003_chrY_T0000418;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000418;transcript_name=HG003_chrY_T0000418;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000418:6;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6033754	6074885	1000	-	.	source_transcript=ENST00000735422.1;source_transcript_name=TTTY2B-203;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735422.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735422.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735422.1,ENST00000735422.1;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_G0000101;transcript_name=HG003_chrY_T0000419;gene_name=TTTY2B;ID=HG003_chrY_T0000419;Name=TTTY2B
HG003_chrY	CAT	exon	6033754	6034002	.	-	.	source_transcript=ENST00000735422.1;source_transcript_name=TTTY2B-203;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735422.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735422.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735422.1,ENST00000735422.1;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000419;transcript_name=HG003_chrY_T0000419;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000419:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034003	6034694	.	-	.	source_transcript=ENST00000735422.1;source_transcript_name=TTTY2B-203;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735422.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735422.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735422.1,ENST00000735422.1;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000419;transcript_name=HG003_chrY_T0000419;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000419:0;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6034695	6034843	.	-	.	source_transcript=ENST00000735422.1;source_transcript_name=TTTY2B-203;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735422.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735422.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735422.1,ENST00000735422.1;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000419;transcript_name=HG003_chrY_T0000419;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000419:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6034844	6074292	.	-	.	source_transcript=ENST00000735422.1;source_transcript_name=TTTY2B-203;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735422.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735422.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735422.1,ENST00000735422.1;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000419;transcript_name=HG003_chrY_T0000419;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000419:1;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6074293	6074474	.	-	.	source_transcript=ENST00000735422.1;source_transcript_name=TTTY2B-203;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735422.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735422.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735422.1,ENST00000735422.1;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000419;transcript_name=HG003_chrY_T0000419;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000419:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6074475	6074822	.	-	.	source_transcript=ENST00000735422.1;source_transcript_name=TTTY2B-203;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735422.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735422.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735422.1,ENST00000735422.1;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000419;transcript_name=HG003_chrY_T0000419;gene_name=TTTY2B;ID=intron:HG003_chrY_T0000419:2;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6074823	6074885	.	-	.	source_transcript=ENST00000735422.1;source_transcript_name=TTTY2B-203;source_gene=ENSG00000212856.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212856.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735422.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735422.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2B;alternative_source_transcripts=ENST00000735422.1,ENST00000735422.1;transcript_id=HG003_chrY_T0000419;gene_id=HG003_chrY_G0000101;Parent=HG003_chrY_T0000419;transcript_name=HG003_chrY_T0000419;gene_name=TTTY2B;ID=exon:HG003_chrY_T0000419:3;Name=TTTY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6063339	6080379	.	+	.	source_gene_common_name=TTTY7;source_gene=ENSG00000147753.11;alternative_source_transcripts=ENST00000735957.1,ENST00000735957.1;gene_id=HG003_chrY_G0000102;gene_biotype=lncRNA;gene_name=TTTY7;gene_sources=liftoff;ID=HG003_chrY_G0000102;Name=TTTY7
HG003_chrY	CAT	transcript	6063339	6073161	1000	+	.	source_transcript=ENST00000735957.1;source_transcript_name=TTTY7-208;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735957.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735957.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735957.1,ENST00000735957.1;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000420;gene_name=TTTY7;ID=HG003_chrY_T0000420;Name=TTTY7
HG003_chrY	CAT	exon	6063339	6063591	.	+	.	source_transcript=ENST00000735957.1;source_transcript_name=TTTY7-208;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735957.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735957.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735957.1,ENST00000735957.1;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000420;transcript_name=HG003_chrY_T0000420;gene_name=TTTY7;ID=exon:HG003_chrY_T0000420:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6063592	6067232	.	+	.	source_transcript=ENST00000735957.1;source_transcript_name=TTTY7-208;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735957.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735957.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735957.1,ENST00000735957.1;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000420;transcript_name=HG003_chrY_T0000420;gene_name=TTTY7;ID=intron:HG003_chrY_T0000420:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6067233	6067390	.	+	.	source_transcript=ENST00000735957.1;source_transcript_name=TTTY7-208;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735957.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735957.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735957.1,ENST00000735957.1;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000420;transcript_name=HG003_chrY_T0000420;gene_name=TTTY7;ID=exon:HG003_chrY_T0000420:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6067391	6072998	.	+	.	source_transcript=ENST00000735957.1;source_transcript_name=TTTY7-208;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735957.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735957.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735957.1,ENST00000735957.1;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000420;transcript_name=HG003_chrY_T0000420;gene_name=TTTY7;ID=intron:HG003_chrY_T0000420:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072999	6073161	.	+	.	source_transcript=ENST00000735957.1;source_transcript_name=TTTY7-208;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735957.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735957.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735957.1,ENST00000735957.1;transcript_id=HG003_chrY_T0000420;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000420;transcript_name=HG003_chrY_T0000420;gene_name=TTTY7;ID=exon:HG003_chrY_T0000420:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6065796	6073170	1000	+	.	source_transcript=ENST00000735958.1;source_transcript_name=TTTY7-209;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735958.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735958.1,ENST00000735958.1;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000421;gene_name=TTTY7;ID=HG003_chrY_T0000421;Name=TTTY7
HG003_chrY	CAT	exon	6065796	6066108	.	+	.	source_transcript=ENST00000735958.1;source_transcript_name=TTTY7-209;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735958.1,ENST00000735958.1;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000421;transcript_name=HG003_chrY_T0000421;gene_name=TTTY7;ID=exon:HG003_chrY_T0000421:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6066109	6067232	.	+	.	source_transcript=ENST00000735958.1;source_transcript_name=TTTY7-209;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735958.1,ENST00000735958.1;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000421;transcript_name=HG003_chrY_T0000421;gene_name=TTTY7;ID=intron:HG003_chrY_T0000421:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6067233	6067390	.	+	.	source_transcript=ENST00000735958.1;source_transcript_name=TTTY7-209;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735958.1,ENST00000735958.1;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000421;transcript_name=HG003_chrY_T0000421;gene_name=TTTY7;ID=exon:HG003_chrY_T0000421:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6067391	6072998	.	+	.	source_transcript=ENST00000735958.1;source_transcript_name=TTTY7-209;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735958.1,ENST00000735958.1;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000421;transcript_name=HG003_chrY_T0000421;gene_name=TTTY7;ID=intron:HG003_chrY_T0000421:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072999	6073170	.	+	.	source_transcript=ENST00000735958.1;source_transcript_name=TTTY7-209;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735958.1,ENST00000735958.1;transcript_id=HG003_chrY_T0000421;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000421;transcript_name=HG003_chrY_T0000421;gene_name=TTTY7;ID=exon:HG003_chrY_T0000421:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6065817	6073169	1000	+	.	source_transcript=ENST00000735959.1;source_transcript_name=TTTY7-210;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735959.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735959.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735959.1,ENST00000735959.1;transcript_id=HG003_chrY_T0000422;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000422;gene_name=TTTY7;ID=HG003_chrY_T0000422;Name=TTTY7
HG003_chrY	CAT	exon	6065817	6066108	.	+	.	source_transcript=ENST00000735959.1;source_transcript_name=TTTY7-210;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735959.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735959.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735959.1,ENST00000735959.1;transcript_id=HG003_chrY_T0000422;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000422;transcript_name=HG003_chrY_T0000422;gene_name=TTTY7;ID=exon:HG003_chrY_T0000422:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6066109	6072998	.	+	.	source_transcript=ENST00000735959.1;source_transcript_name=TTTY7-210;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735959.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735959.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735959.1,ENST00000735959.1;transcript_id=HG003_chrY_T0000422;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000422;transcript_name=HG003_chrY_T0000422;gene_name=TTTY7;ID=intron:HG003_chrY_T0000422:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072999	6073169	.	+	.	source_transcript=ENST00000735959.1;source_transcript_name=TTTY7-210;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735959.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735959.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735959.1,ENST00000735959.1;transcript_id=HG003_chrY_T0000422;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000422;transcript_name=HG003_chrY_T0000422;gene_name=TTTY7;ID=exon:HG003_chrY_T0000422:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6065818	6080379	1000	+	.	source_transcript=ENST00000715683.1;source_transcript_name=TTTY7-205;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715683.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000715683.1,ENST00000715683.1;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000423;gene_name=TTTY7;ID=HG003_chrY_T0000423;Name=TTTY7
HG003_chrY	CAT	exon	6065818	6066108	.	+	.	source_transcript=ENST00000715683.1;source_transcript_name=TTTY7-205;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000715683.1,ENST00000715683.1;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000423;transcript_name=HG003_chrY_T0000423;gene_name=TTTY7;ID=exon:HG003_chrY_T0000423:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6066109	6067232	.	+	.	source_transcript=ENST00000715683.1;source_transcript_name=TTTY7-205;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000715683.1,ENST00000715683.1;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000423;transcript_name=HG003_chrY_T0000423;gene_name=TTTY7;ID=intron:HG003_chrY_T0000423:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6067233	6067390	.	+	.	source_transcript=ENST00000715683.1;source_transcript_name=TTTY7-205;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000715683.1,ENST00000715683.1;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000423;transcript_name=HG003_chrY_T0000423;gene_name=TTTY7;ID=exon:HG003_chrY_T0000423:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6067391	6072998	.	+	.	source_transcript=ENST00000715683.1;source_transcript_name=TTTY7-205;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000715683.1,ENST00000715683.1;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000423;transcript_name=HG003_chrY_T0000423;gene_name=TTTY7;ID=intron:HG003_chrY_T0000423:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072999	6073080	.	+	.	source_transcript=ENST00000715683.1;source_transcript_name=TTTY7-205;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000715683.1,ENST00000715683.1;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000423;transcript_name=HG003_chrY_T0000423;gene_name=TTTY7;ID=exon:HG003_chrY_T0000423:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6073081	6075300	.	+	.	source_transcript=ENST00000715683.1;source_transcript_name=TTTY7-205;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000715683.1,ENST00000715683.1;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000423;transcript_name=HG003_chrY_T0000423;gene_name=TTTY7;ID=intron:HG003_chrY_T0000423:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6075301	6075462	.	+	.	source_transcript=ENST00000715683.1;source_transcript_name=TTTY7-205;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000715683.1,ENST00000715683.1;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000423;transcript_name=HG003_chrY_T0000423;gene_name=TTTY7;ID=exon:HG003_chrY_T0000423:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6075463	6078544	.	+	.	source_transcript=ENST00000715683.1;source_transcript_name=TTTY7-205;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000715683.1,ENST00000715683.1;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000423;transcript_name=HG003_chrY_T0000423;gene_name=TTTY7;ID=intron:HG003_chrY_T0000423:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6078545	6078658	.	+	.	source_transcript=ENST00000715683.1;source_transcript_name=TTTY7-205;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000715683.1,ENST00000715683.1;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000423;transcript_name=HG003_chrY_T0000423;gene_name=TTTY7;ID=exon:HG003_chrY_T0000423:4;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6078659	6080133	.	+	.	source_transcript=ENST00000715683.1;source_transcript_name=TTTY7-205;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000715683.1,ENST00000715683.1;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000423;transcript_name=HG003_chrY_T0000423;gene_name=TTTY7;ID=intron:HG003_chrY_T0000423:4;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6080134	6080379	.	+	.	source_transcript=ENST00000715683.1;source_transcript_name=TTTY7-205;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715683.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715683.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000715683.1,ENST00000715683.1;transcript_id=HG003_chrY_T0000423;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000423;transcript_name=HG003_chrY_T0000423;gene_name=TTTY7;ID=exon:HG003_chrY_T0000423:5;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6065818	6080379	1000	+	.	source_transcript=ENST00000735955.1;source_transcript_name=TTTY7-206;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735955.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735955.1,ENST00000735955.1;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000424;gene_name=TTTY7;ID=HG003_chrY_T0000424;Name=TTTY7
HG003_chrY	CAT	exon	6065818	6066108	.	+	.	source_transcript=ENST00000735955.1;source_transcript_name=TTTY7-206;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735955.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735955.1,ENST00000735955.1;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000424;transcript_name=HG003_chrY_T0000424;gene_name=TTTY7;ID=exon:HG003_chrY_T0000424:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6066109	6072998	.	+	.	source_transcript=ENST00000735955.1;source_transcript_name=TTTY7-206;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735955.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735955.1,ENST00000735955.1;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000424;transcript_name=HG003_chrY_T0000424;gene_name=TTTY7;ID=intron:HG003_chrY_T0000424:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072999	6073080	.	+	.	source_transcript=ENST00000735955.1;source_transcript_name=TTTY7-206;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735955.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735955.1,ENST00000735955.1;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000424;transcript_name=HG003_chrY_T0000424;gene_name=TTTY7;ID=exon:HG003_chrY_T0000424:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6073081	6075300	.	+	.	source_transcript=ENST00000735955.1;source_transcript_name=TTTY7-206;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735955.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735955.1,ENST00000735955.1;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000424;transcript_name=HG003_chrY_T0000424;gene_name=TTTY7;ID=intron:HG003_chrY_T0000424:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6075301	6075462	.	+	.	source_transcript=ENST00000735955.1;source_transcript_name=TTTY7-206;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735955.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735955.1,ENST00000735955.1;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000424;transcript_name=HG003_chrY_T0000424;gene_name=TTTY7;ID=exon:HG003_chrY_T0000424:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6075463	6078544	.	+	.	source_transcript=ENST00000735955.1;source_transcript_name=TTTY7-206;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735955.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735955.1,ENST00000735955.1;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000424;transcript_name=HG003_chrY_T0000424;gene_name=TTTY7;ID=intron:HG003_chrY_T0000424:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6078545	6078658	.	+	.	source_transcript=ENST00000735955.1;source_transcript_name=TTTY7-206;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735955.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735955.1,ENST00000735955.1;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000424;transcript_name=HG003_chrY_T0000424;gene_name=TTTY7;ID=exon:HG003_chrY_T0000424:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6078659	6080133	.	+	.	source_transcript=ENST00000735955.1;source_transcript_name=TTTY7-206;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735955.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735955.1,ENST00000735955.1;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000424;transcript_name=HG003_chrY_T0000424;gene_name=TTTY7;ID=intron:HG003_chrY_T0000424:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6080134	6080379	.	+	.	source_transcript=ENST00000735955.1;source_transcript_name=TTTY7-206;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735955.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735955.1,ENST00000735955.1;transcript_id=HG003_chrY_T0000424;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000424;transcript_name=HG003_chrY_T0000424;gene_name=TTTY7;ID=exon:HG003_chrY_T0000424:4;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6065818	6073169	1000	+	.	source_transcript=ENST00000735960.1;source_transcript_name=TTTY7-211;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735960.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735960.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735960.1,ENST00000735960.1;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000425;gene_name=TTTY7;ID=HG003_chrY_T0000425;Name=TTTY7
HG003_chrY	CAT	exon	6065818	6066108	.	+	.	source_transcript=ENST00000735960.1;source_transcript_name=TTTY7-211;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735960.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735960.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735960.1,ENST00000735960.1;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000425;transcript_name=HG003_chrY_T0000425;gene_name=TTTY7;ID=exon:HG003_chrY_T0000425:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6066109	6067232	.	+	.	source_transcript=ENST00000735960.1;source_transcript_name=TTTY7-211;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735960.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735960.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735960.1,ENST00000735960.1;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000425;transcript_name=HG003_chrY_T0000425;gene_name=TTTY7;ID=intron:HG003_chrY_T0000425:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6067233	6067390	.	+	.	source_transcript=ENST00000735960.1;source_transcript_name=TTTY7-211;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735960.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735960.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735960.1,ENST00000735960.1;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000425;transcript_name=HG003_chrY_T0000425;gene_name=TTTY7;ID=exon:HG003_chrY_T0000425:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6067391	6069445	.	+	.	source_transcript=ENST00000735960.1;source_transcript_name=TTTY7-211;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735960.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735960.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735960.1,ENST00000735960.1;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000425;transcript_name=HG003_chrY_T0000425;gene_name=TTTY7;ID=intron:HG003_chrY_T0000425:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6069446	6069579	.	+	.	source_transcript=ENST00000735960.1;source_transcript_name=TTTY7-211;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735960.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735960.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735960.1,ENST00000735960.1;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000425;transcript_name=HG003_chrY_T0000425;gene_name=TTTY7;ID=exon:HG003_chrY_T0000425:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6069580	6069975	.	+	.	source_transcript=ENST00000735960.1;source_transcript_name=TTTY7-211;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735960.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735960.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735960.1,ENST00000735960.1;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000425;transcript_name=HG003_chrY_T0000425;gene_name=TTTY7;ID=intron:HG003_chrY_T0000425:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6069976	6070082	.	+	.	source_transcript=ENST00000735960.1;source_transcript_name=TTTY7-211;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735960.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735960.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735960.1,ENST00000735960.1;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000425;transcript_name=HG003_chrY_T0000425;gene_name=TTTY7;ID=exon:HG003_chrY_T0000425:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6070083	6072998	.	+	.	source_transcript=ENST00000735960.1;source_transcript_name=TTTY7-211;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735960.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735960.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735960.1,ENST00000735960.1;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000425;transcript_name=HG003_chrY_T0000425;gene_name=TTTY7;ID=intron:HG003_chrY_T0000425:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072999	6073169	.	+	.	source_transcript=ENST00000735960.1;source_transcript_name=TTTY7-211;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735960.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735960.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735960.1,ENST00000735960.1;transcript_id=HG003_chrY_T0000425;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000425;transcript_name=HG003_chrY_T0000425;gene_name=TTTY7;ID=exon:HG003_chrY_T0000425:4;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6065820	6073161	1000	+	.	source_transcript=ENST00000735962.1;source_transcript_name=TTTY7-213;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735962.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735962.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735962.1,ENST00000735962.1;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000426;gene_name=TTTY7;ID=HG003_chrY_T0000426;Name=TTTY7
HG003_chrY	CAT	exon	6065820	6066108	.	+	.	source_transcript=ENST00000735962.1;source_transcript_name=TTTY7-213;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735962.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735962.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735962.1,ENST00000735962.1;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000426;transcript_name=HG003_chrY_T0000426;gene_name=TTTY7;ID=exon:HG003_chrY_T0000426:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6066109	6069975	.	+	.	source_transcript=ENST00000735962.1;source_transcript_name=TTTY7-213;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735962.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735962.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735962.1,ENST00000735962.1;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000426;transcript_name=HG003_chrY_T0000426;gene_name=TTTY7;ID=intron:HG003_chrY_T0000426:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6069976	6070082	.	+	.	source_transcript=ENST00000735962.1;source_transcript_name=TTTY7-213;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735962.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735962.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735962.1,ENST00000735962.1;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000426;transcript_name=HG003_chrY_T0000426;gene_name=TTTY7;ID=exon:HG003_chrY_T0000426:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6070083	6072998	.	+	.	source_transcript=ENST00000735962.1;source_transcript_name=TTTY7-213;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735962.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735962.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735962.1,ENST00000735962.1;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000426;transcript_name=HG003_chrY_T0000426;gene_name=TTTY7;ID=intron:HG003_chrY_T0000426:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072999	6073161	.	+	.	source_transcript=ENST00000735962.1;source_transcript_name=TTTY7-213;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735962.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735962.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735962.1,ENST00000735962.1;transcript_id=HG003_chrY_T0000426;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000426;transcript_name=HG003_chrY_T0000426;gene_name=TTTY7;ID=exon:HG003_chrY_T0000426:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6065821	6073167	1000	+	.	source_transcript=ENST00000421353.3;source_transcript_name=TTTY7-202;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421353.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421353.3;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000421353.3,ENST00000421353.3;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000427;gene_name=TTTY7;ID=HG003_chrY_T0000427;Name=TTTY7
HG003_chrY	CAT	exon	6065821	6066108	.	+	.	source_transcript=ENST00000421353.3;source_transcript_name=TTTY7-202;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421353.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421353.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000421353.3,ENST00000421353.3;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000427;transcript_name=HG003_chrY_T0000427;gene_name=TTTY7;ID=exon:HG003_chrY_T0000427:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6066109	6069445	.	+	.	source_transcript=ENST00000421353.3;source_transcript_name=TTTY7-202;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421353.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421353.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000421353.3,ENST00000421353.3;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000427;transcript_name=HG003_chrY_T0000427;gene_name=TTTY7;ID=intron:HG003_chrY_T0000427:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6069446	6069579	.	+	.	source_transcript=ENST00000421353.3;source_transcript_name=TTTY7-202;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421353.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421353.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000421353.3,ENST00000421353.3;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000427;transcript_name=HG003_chrY_T0000427;gene_name=TTTY7;ID=exon:HG003_chrY_T0000427:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6069580	6072998	.	+	.	source_transcript=ENST00000421353.3;source_transcript_name=TTTY7-202;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421353.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421353.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000421353.3,ENST00000421353.3;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000427;transcript_name=HG003_chrY_T0000427;gene_name=TTTY7;ID=intron:HG003_chrY_T0000427:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072999	6073167	.	+	.	source_transcript=ENST00000421353.3;source_transcript_name=TTTY7-202;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421353.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421353.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000421353.3,ENST00000421353.3;transcript_id=HG003_chrY_T0000427;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000427;transcript_name=HG003_chrY_T0000427;gene_name=TTTY7;ID=exon:HG003_chrY_T0000427:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6065821	6073168	1000	+	.	source_transcript=ENST00000735961.1;source_transcript_name=TTTY7-212;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735961.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735961.1,ENST00000735961.1;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000428;gene_name=TTTY7;ID=HG003_chrY_T0000428;Name=TTTY7
HG003_chrY	CAT	exon	6065821	6066108	.	+	.	source_transcript=ENST00000735961.1;source_transcript_name=TTTY7-212;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735961.1,ENST00000735961.1;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000428;transcript_name=HG003_chrY_T0000428;gene_name=TTTY7;ID=exon:HG003_chrY_T0000428:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6066109	6069445	.	+	.	source_transcript=ENST00000735961.1;source_transcript_name=TTTY7-212;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735961.1,ENST00000735961.1;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000428;transcript_name=HG003_chrY_T0000428;gene_name=TTTY7;ID=intron:HG003_chrY_T0000428:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6069446	6069579	.	+	.	source_transcript=ENST00000735961.1;source_transcript_name=TTTY7-212;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735961.1,ENST00000735961.1;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000428;transcript_name=HG003_chrY_T0000428;gene_name=TTTY7;ID=exon:HG003_chrY_T0000428:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6069580	6069975	.	+	.	source_transcript=ENST00000735961.1;source_transcript_name=TTTY7-212;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735961.1,ENST00000735961.1;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000428;transcript_name=HG003_chrY_T0000428;gene_name=TTTY7;ID=intron:HG003_chrY_T0000428:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6069976	6070082	.	+	.	source_transcript=ENST00000735961.1;source_transcript_name=TTTY7-212;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735961.1,ENST00000735961.1;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000428;transcript_name=HG003_chrY_T0000428;gene_name=TTTY7;ID=exon:HG003_chrY_T0000428:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6070083	6072998	.	+	.	source_transcript=ENST00000735961.1;source_transcript_name=TTTY7-212;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735961.1,ENST00000735961.1;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000428;transcript_name=HG003_chrY_T0000428;gene_name=TTTY7;ID=intron:HG003_chrY_T0000428:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072999	6073168	.	+	.	source_transcript=ENST00000735961.1;source_transcript_name=TTTY7-212;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735961.1,ENST00000735961.1;transcript_id=HG003_chrY_T0000428;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000428;transcript_name=HG003_chrY_T0000428;gene_name=TTTY7;ID=exon:HG003_chrY_T0000428:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6065822	6067476	1000	+	.	source_transcript=ENST00000735968.1;source_transcript_name=TTTY7-219;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735968.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735968.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735968.1,ENST00000735968.1;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000429;gene_name=TTTY7;ID=HG003_chrY_T0000429;Name=TTTY7
HG003_chrY	CAT	exon	6065822	6066108	.	+	.	source_transcript=ENST00000735968.1;source_transcript_name=TTTY7-219;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735968.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735968.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735968.1,ENST00000735968.1;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000429;transcript_name=HG003_chrY_T0000429;gene_name=TTTY7;ID=exon:HG003_chrY_T0000429:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6066109	6067232	.	+	.	source_transcript=ENST00000735968.1;source_transcript_name=TTTY7-219;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735968.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735968.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735968.1,ENST00000735968.1;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000429;transcript_name=HG003_chrY_T0000429;gene_name=TTTY7;ID=intron:HG003_chrY_T0000429:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6067233	6067476	.	+	.	source_transcript=ENST00000735968.1;source_transcript_name=TTTY7-219;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735968.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735968.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735968.1,ENST00000735968.1;transcript_id=HG003_chrY_T0000429;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000429;transcript_name=HG003_chrY_T0000429;gene_name=TTTY7;ID=exon:HG003_chrY_T0000429:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6065843	6080376	1000	+	.	source_transcript=ENST00000735956.1;source_transcript_name=TTTY7-207;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735956.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735956.1,ENST00000735956.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000430;gene_name=TTTY7;ID=HG003_chrY_T0000430;Name=TTTY7
HG003_chrY	CAT	exon	6065843	6066108	.	+	.	source_transcript=ENST00000735956.1;source_transcript_name=TTTY7-207;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735956.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735956.1,ENST00000735956.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000430;transcript_name=HG003_chrY_T0000430;gene_name=TTTY7;ID=exon:HG003_chrY_T0000430:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6066109	6072998	.	+	.	source_transcript=ENST00000735956.1;source_transcript_name=TTTY7-207;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735956.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735956.1,ENST00000735956.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000430;transcript_name=HG003_chrY_T0000430;gene_name=TTTY7;ID=intron:HG003_chrY_T0000430:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072999	6073080	.	+	.	source_transcript=ENST00000735956.1;source_transcript_name=TTTY7-207;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735956.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735956.1,ENST00000735956.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000430;transcript_name=HG003_chrY_T0000430;gene_name=TTTY7;ID=exon:HG003_chrY_T0000430:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6073081	6075387	.	+	.	source_transcript=ENST00000735956.1;source_transcript_name=TTTY7-207;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735956.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735956.1,ENST00000735956.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000430;transcript_name=HG003_chrY_T0000430;gene_name=TTTY7;ID=intron:HG003_chrY_T0000430:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6075388	6075462	.	+	.	source_transcript=ENST00000735956.1;source_transcript_name=TTTY7-207;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735956.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735956.1,ENST00000735956.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000430;transcript_name=HG003_chrY_T0000430;gene_name=TTTY7;ID=exon:HG003_chrY_T0000430:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6075463	6078544	.	+	.	source_transcript=ENST00000735956.1;source_transcript_name=TTTY7-207;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735956.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735956.1,ENST00000735956.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000430;transcript_name=HG003_chrY_T0000430;gene_name=TTTY7;ID=intron:HG003_chrY_T0000430:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6078545	6078658	.	+	.	source_transcript=ENST00000735956.1;source_transcript_name=TTTY7-207;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735956.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735956.1,ENST00000735956.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000430;transcript_name=HG003_chrY_T0000430;gene_name=TTTY7;ID=exon:HG003_chrY_T0000430:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6078659	6080133	.	+	.	source_transcript=ENST00000735956.1;source_transcript_name=TTTY7-207;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735956.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735956.1,ENST00000735956.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000430;transcript_name=HG003_chrY_T0000430;gene_name=TTTY7;ID=intron:HG003_chrY_T0000430:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6080134	6080376	.	+	.	source_transcript=ENST00000735956.1;source_transcript_name=TTTY7-207;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735956.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735956.1,ENST00000735956.1;transcript_id=HG003_chrY_T0000430;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000430;transcript_name=HG003_chrY_T0000430;gene_name=TTTY7;ID=exon:HG003_chrY_T0000430:4;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6065843	6073164	1000	+	.	source_transcript=ENST00000735963.1;source_transcript_name=TTTY7-214;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735963.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735963.1,ENST00000735963.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000431;gene_name=TTTY7;ID=HG003_chrY_T0000431;Name=TTTY7
HG003_chrY	CAT	exon	6065843	6066108	.	+	.	source_transcript=ENST00000735963.1;source_transcript_name=TTTY7-214;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735963.1,ENST00000735963.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000431;transcript_name=HG003_chrY_T0000431;gene_name=TTTY7;ID=exon:HG003_chrY_T0000431:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6066109	6067232	.	+	.	source_transcript=ENST00000735963.1;source_transcript_name=TTTY7-214;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735963.1,ENST00000735963.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000431;transcript_name=HG003_chrY_T0000431;gene_name=TTTY7;ID=intron:HG003_chrY_T0000431:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6067233	6067390	.	+	.	source_transcript=ENST00000735963.1;source_transcript_name=TTTY7-214;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735963.1,ENST00000735963.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000431;transcript_name=HG003_chrY_T0000431;gene_name=TTTY7;ID=exon:HG003_chrY_T0000431:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6067391	6069445	.	+	.	source_transcript=ENST00000735963.1;source_transcript_name=TTTY7-214;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735963.1,ENST00000735963.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000431;transcript_name=HG003_chrY_T0000431;gene_name=TTTY7;ID=intron:HG003_chrY_T0000431:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6069446	6069579	.	+	.	source_transcript=ENST00000735963.1;source_transcript_name=TTTY7-214;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735963.1,ENST00000735963.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000431;transcript_name=HG003_chrY_T0000431;gene_name=TTTY7;ID=exon:HG003_chrY_T0000431:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6069580	6072998	.	+	.	source_transcript=ENST00000735963.1;source_transcript_name=TTTY7-214;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735963.1,ENST00000735963.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000431;transcript_name=HG003_chrY_T0000431;gene_name=TTTY7;ID=intron:HG003_chrY_T0000431:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072999	6073164	.	+	.	source_transcript=ENST00000735963.1;source_transcript_name=TTTY7-214;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735963.1,ENST00000735963.1;transcript_id=HG003_chrY_T0000431;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000431;transcript_name=HG003_chrY_T0000431;gene_name=TTTY7;ID=exon:HG003_chrY_T0000431:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6068226	6073168	1000	+	.	source_transcript=ENST00000735964.1;source_transcript_name=TTTY7-215;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735964.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735964.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735964.1,ENST00000735964.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000432;gene_name=TTTY7;ID=HG003_chrY_T0000432;Name=TTTY7
HG003_chrY	CAT	exon	6068226	6068525	.	+	.	source_transcript=ENST00000735964.1;source_transcript_name=TTTY7-215;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735964.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735964.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735964.1,ENST00000735964.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000432;transcript_name=HG003_chrY_T0000432;gene_name=TTTY7;ID=exon:HG003_chrY_T0000432:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6068526	6072998	.	+	.	source_transcript=ENST00000735964.1;source_transcript_name=TTTY7-215;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735964.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735964.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735964.1,ENST00000735964.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000432;transcript_name=HG003_chrY_T0000432;gene_name=TTTY7;ID=intron:HG003_chrY_T0000432:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072999	6073168	.	+	.	source_transcript=ENST00000735964.1;source_transcript_name=TTTY7-215;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735964.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735964.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735964.1,ENST00000735964.1;transcript_id=HG003_chrY_T0000432;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000432;transcript_name=HG003_chrY_T0000432;gene_name=TTTY7;ID=exon:HG003_chrY_T0000432:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6071941	6080379	1000	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=HG003_chrY_T0000433;Name=TTTY7
HG003_chrY	CAT	exon	6071941	6071977	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=exon:HG003_chrY_T0000433:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6071978	6072918	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=intron:HG003_chrY_T0000433:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072919	6073080	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=exon:HG003_chrY_T0000433:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6073081	6075387	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=intron:HG003_chrY_T0000433:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6075388	6075462	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=exon:HG003_chrY_T0000433:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6075463	6076150	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=intron:HG003_chrY_T0000433:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6076151	6076627	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=exon:HG003_chrY_T0000433:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6076628	6078544	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=intron:HG003_chrY_T0000433:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6078545	6078658	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=exon:HG003_chrY_T0000433:4;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6078659	6079631	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=intron:HG003_chrY_T0000433:4;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6079632	6079887	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=exon:HG003_chrY_T0000433:5;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6079888	6080133	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=intron:HG003_chrY_T0000433:5;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6080134	6080379	.	+	.	source_transcript=ENST00000276770.8;source_transcript_name=TTTY7-201;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276770.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276770.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000276770.8,ENST00000276770.8;transcript_id=HG003_chrY_T0000433;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000433;transcript_name=HG003_chrY_T0000433;gene_name=TTTY7;ID=exon:HG003_chrY_T0000433:6;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6071941	6080379	1000	+	.	source_transcript=ENST00000457100.5;source_transcript_name=TTTY7-204;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000457100.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000457100.5;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000457100.5,ENST00000457100.5;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000434;gene_name=TTTY7;ID=HG003_chrY_T0000434;Name=TTTY7
HG003_chrY	CAT	exon	6071941	6071977	.	+	.	source_transcript=ENST00000457100.5;source_transcript_name=TTTY7-204;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000457100.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000457100.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000457100.5,ENST00000457100.5;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000434;transcript_name=HG003_chrY_T0000434;gene_name=TTTY7;ID=exon:HG003_chrY_T0000434:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6071978	6072918	.	+	.	source_transcript=ENST00000457100.5;source_transcript_name=TTTY7-204;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000457100.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000457100.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000457100.5,ENST00000457100.5;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000434;transcript_name=HG003_chrY_T0000434;gene_name=TTTY7;ID=intron:HG003_chrY_T0000434:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6072919	6073080	.	+	.	source_transcript=ENST00000457100.5;source_transcript_name=TTTY7-204;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000457100.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000457100.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000457100.5,ENST00000457100.5;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000434;transcript_name=HG003_chrY_T0000434;gene_name=TTTY7;ID=exon:HG003_chrY_T0000434:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6073081	6075387	.	+	.	source_transcript=ENST00000457100.5;source_transcript_name=TTTY7-204;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000457100.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000457100.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000457100.5,ENST00000457100.5;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000434;transcript_name=HG003_chrY_T0000434;gene_name=TTTY7;ID=intron:HG003_chrY_T0000434:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6075388	6075462	.	+	.	source_transcript=ENST00000457100.5;source_transcript_name=TTTY7-204;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000457100.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000457100.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000457100.5,ENST00000457100.5;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000434;transcript_name=HG003_chrY_T0000434;gene_name=TTTY7;ID=exon:HG003_chrY_T0000434:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6075463	6076150	.	+	.	source_transcript=ENST00000457100.5;source_transcript_name=TTTY7-204;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000457100.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000457100.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000457100.5,ENST00000457100.5;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000434;transcript_name=HG003_chrY_T0000434;gene_name=TTTY7;ID=intron:HG003_chrY_T0000434:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6076151	6076627	.	+	.	source_transcript=ENST00000457100.5;source_transcript_name=TTTY7-204;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000457100.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000457100.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000457100.5,ENST00000457100.5;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000434;transcript_name=HG003_chrY_T0000434;gene_name=TTTY7;ID=exon:HG003_chrY_T0000434:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6076628	6078544	.	+	.	source_transcript=ENST00000457100.5;source_transcript_name=TTTY7-204;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000457100.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000457100.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000457100.5,ENST00000457100.5;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000434;transcript_name=HG003_chrY_T0000434;gene_name=TTTY7;ID=intron:HG003_chrY_T0000434:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6078545	6078658	.	+	.	source_transcript=ENST00000457100.5;source_transcript_name=TTTY7-204;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000457100.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000457100.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000457100.5,ENST00000457100.5;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000434;transcript_name=HG003_chrY_T0000434;gene_name=TTTY7;ID=exon:HG003_chrY_T0000434:4;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6078659	6080133	.	+	.	source_transcript=ENST00000457100.5;source_transcript_name=TTTY7-204;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000457100.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000457100.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000457100.5,ENST00000457100.5;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000434;transcript_name=HG003_chrY_T0000434;gene_name=TTTY7;ID=intron:HG003_chrY_T0000434:4;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6080134	6080379	.	+	.	source_transcript=ENST00000457100.5;source_transcript_name=TTTY7-204;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000457100.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000457100.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000457100.5,ENST00000457100.5;transcript_id=HG003_chrY_T0000434;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000434;transcript_name=HG003_chrY_T0000434;gene_name=TTTY7;ID=exon:HG003_chrY_T0000434:5;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6076359	6080379	1000	+	.	source_transcript=ENST00000735965.1;source_transcript_name=TTTY7-216;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735965.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735965.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735965.1,ENST00000735965.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000435;gene_name=TTTY7;ID=HG003_chrY_T0000435;Name=TTTY7
HG003_chrY	CAT	exon	6076359	6076627	.	+	.	source_transcript=ENST00000735965.1;source_transcript_name=TTTY7-216;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735965.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735965.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735965.1,ENST00000735965.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000435;transcript_name=HG003_chrY_T0000435;gene_name=TTTY7;ID=exon:HG003_chrY_T0000435:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6076628	6080133	.	+	.	source_transcript=ENST00000735965.1;source_transcript_name=TTTY7-216;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735965.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735965.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735965.1,ENST00000735965.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000435;transcript_name=HG003_chrY_T0000435;gene_name=TTTY7;ID=intron:HG003_chrY_T0000435:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6080134	6080379	.	+	.	source_transcript=ENST00000735965.1;source_transcript_name=TTTY7-216;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735965.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735965.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735965.1,ENST00000735965.1;transcript_id=HG003_chrY_T0000435;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000435;transcript_name=HG003_chrY_T0000435;gene_name=TTTY7;ID=exon:HG003_chrY_T0000435:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6076378	6080379	1000	+	.	source_transcript=ENST00000449828.1;source_transcript_name=TTTY7-203;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000449828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449828.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000449828.1,ENST00000449828.1;transcript_id=HG003_chrY_T0000436;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000436;gene_name=TTTY7;ID=HG003_chrY_T0000436;Name=TTTY7
HG003_chrY	CAT	exon	6076378	6076627	.	+	.	source_transcript=ENST00000449828.1;source_transcript_name=TTTY7-203;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000449828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449828.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000449828.1,ENST00000449828.1;transcript_id=HG003_chrY_T0000436;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000436;transcript_name=HG003_chrY_T0000436;gene_name=TTTY7;ID=exon:HG003_chrY_T0000436:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6076628	6078445	.	+	.	source_transcript=ENST00000449828.1;source_transcript_name=TTTY7-203;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000449828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449828.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000449828.1,ENST00000449828.1;transcript_id=HG003_chrY_T0000436;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000436;transcript_name=HG003_chrY_T0000436;gene_name=TTTY7;ID=intron:HG003_chrY_T0000436:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6078446	6078658	.	+	.	source_transcript=ENST00000449828.1;source_transcript_name=TTTY7-203;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000449828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449828.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000449828.1,ENST00000449828.1;transcript_id=HG003_chrY_T0000436;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000436;transcript_name=HG003_chrY_T0000436;gene_name=TTTY7;ID=exon:HG003_chrY_T0000436:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6078659	6080133	.	+	.	source_transcript=ENST00000449828.1;source_transcript_name=TTTY7-203;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000449828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449828.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000449828.1,ENST00000449828.1;transcript_id=HG003_chrY_T0000436;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000436;transcript_name=HG003_chrY_T0000436;gene_name=TTTY7;ID=intron:HG003_chrY_T0000436:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6080134	6080379	.	+	.	source_transcript=ENST00000449828.1;source_transcript_name=TTTY7-203;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000449828.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449828.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000449828.1,ENST00000449828.1;transcript_id=HG003_chrY_T0000436;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000436;transcript_name=HG003_chrY_T0000436;gene_name=TTTY7;ID=exon:HG003_chrY_T0000436:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6077541	6080379	1000	+	.	source_transcript=ENST00000735966.1;source_transcript_name=TTTY7-217;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735966.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735966.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735966.1,ENST00000735966.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000437;gene_name=TTTY7;ID=HG003_chrY_T0000437;Name=TTTY7
HG003_chrY	CAT	exon	6077541	6077904	.	+	.	source_transcript=ENST00000735966.1;source_transcript_name=TTTY7-217;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735966.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735966.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735966.1,ENST00000735966.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000437;transcript_name=HG003_chrY_T0000437;gene_name=TTTY7;ID=exon:HG003_chrY_T0000437:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6077905	6078544	.	+	.	source_transcript=ENST00000735966.1;source_transcript_name=TTTY7-217;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735966.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735966.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735966.1,ENST00000735966.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000437;transcript_name=HG003_chrY_T0000437;gene_name=TTTY7;ID=intron:HG003_chrY_T0000437:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6078545	6078658	.	+	.	source_transcript=ENST00000735966.1;source_transcript_name=TTTY7-217;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735966.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735966.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735966.1,ENST00000735966.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000437;transcript_name=HG003_chrY_T0000437;gene_name=TTTY7;ID=exon:HG003_chrY_T0000437:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6078659	6079631	.	+	.	source_transcript=ENST00000735966.1;source_transcript_name=TTTY7-217;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735966.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735966.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735966.1,ENST00000735966.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000437;transcript_name=HG003_chrY_T0000437;gene_name=TTTY7;ID=intron:HG003_chrY_T0000437:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6079632	6079887	.	+	.	source_transcript=ENST00000735966.1;source_transcript_name=TTTY7-217;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735966.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735966.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735966.1,ENST00000735966.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000437;transcript_name=HG003_chrY_T0000437;gene_name=TTTY7;ID=exon:HG003_chrY_T0000437:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6079888	6080133	.	+	.	source_transcript=ENST00000735966.1;source_transcript_name=TTTY7-217;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735966.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735966.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735966.1,ENST00000735966.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000437;transcript_name=HG003_chrY_T0000437;gene_name=TTTY7;ID=intron:HG003_chrY_T0000437:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6080134	6080379	.	+	.	source_transcript=ENST00000735966.1;source_transcript_name=TTTY7-217;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735966.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735966.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735966.1,ENST00000735966.1;transcript_id=HG003_chrY_T0000437;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000437;transcript_name=HG003_chrY_T0000437;gene_name=TTTY7;ID=exon:HG003_chrY_T0000437:3;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6077541	6080369	1000	+	.	source_transcript=ENST00000735967.1;source_transcript_name=TTTY7-218;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735967.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735967.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735967.1,ENST00000735967.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_G0000102;transcript_name=HG003_chrY_T0000438;gene_name=TTTY7;ID=HG003_chrY_T0000438;Name=TTTY7
HG003_chrY	CAT	exon	6077541	6077904	.	+	.	source_transcript=ENST00000735967.1;source_transcript_name=TTTY7-218;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735967.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735967.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735967.1,ENST00000735967.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000438;transcript_name=HG003_chrY_T0000438;gene_name=TTTY7;ID=exon:HG003_chrY_T0000438:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6077905	6078544	.	+	.	source_transcript=ENST00000735967.1;source_transcript_name=TTTY7-218;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735967.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735967.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735967.1,ENST00000735967.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000438;transcript_name=HG003_chrY_T0000438;gene_name=TTTY7;ID=intron:HG003_chrY_T0000438:0;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6078545	6078658	.	+	.	source_transcript=ENST00000735967.1;source_transcript_name=TTTY7-218;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735967.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735967.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735967.1,ENST00000735967.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000438;transcript_name=HG003_chrY_T0000438;gene_name=TTTY7;ID=exon:HG003_chrY_T0000438:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6078659	6080133	.	+	.	source_transcript=ENST00000735967.1;source_transcript_name=TTTY7-218;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735967.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735967.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735967.1,ENST00000735967.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000438;transcript_name=HG003_chrY_T0000438;gene_name=TTTY7;ID=intron:HG003_chrY_T0000438:1;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6080134	6080369	.	+	.	source_transcript=ENST00000735967.1;source_transcript_name=TTTY7-218;source_gene=ENSG00000147753.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147753.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735967.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735967.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7;alternative_source_transcripts=ENST00000735967.1,ENST00000735967.1;transcript_id=HG003_chrY_T0000438;gene_id=HG003_chrY_G0000102;Parent=HG003_chrY_T0000438;transcript_name=HG003_chrY_T0000438;gene_name=TTTY7;ID=exon:HG003_chrY_T0000438:2;Name=TTTY7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6084857	6096160	.	-	.	source_gene_common_name=TTTY8B;source_gene=ENSG00000185700.11;alternative_source_transcripts=ENST00000736416.1;gene_id=HG003_chrY_G0000103;gene_biotype=lncRNA;gene_name=TTTY8B;gene_sources=liftoff;ID=HG003_chrY_G0000103;Name=TTTY8B
HG003_chrY	CAT	transcript	6084857	6096146	1000	-	.	source_transcript=ENST00000736416.1;source_transcript_name=TTTY8B-203;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736416.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736416.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736416.1;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_G0000103;transcript_name=HG003_chrY_T0000439;gene_name=TTTY8B;ID=HG003_chrY_T0000439;Name=TTTY8B
HG003_chrY	CAT	exon	6084857	6085754	.	-	.	source_transcript=ENST00000736416.1;source_transcript_name=TTTY8B-203;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736416.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736416.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736416.1;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000439;transcript_name=HG003_chrY_T0000439;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000439:0;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6085755	6095281	.	-	.	source_transcript=ENST00000736416.1;source_transcript_name=TTTY8B-203;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736416.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736416.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736416.1;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000439;transcript_name=HG003_chrY_T0000439;gene_name=TTTY8B;ID=intron:HG003_chrY_T0000439:0;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6095282	6095486	.	-	.	source_transcript=ENST00000736416.1;source_transcript_name=TTTY8B-203;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736416.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736416.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736416.1;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000439;transcript_name=HG003_chrY_T0000439;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000439:1;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6095487	6095963	.	-	.	source_transcript=ENST00000736416.1;source_transcript_name=TTTY8B-203;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736416.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736416.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736416.1;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000439;transcript_name=HG003_chrY_T0000439;gene_name=TTTY8B;ID=intron:HG003_chrY_T0000439:1;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6095964	6096146	.	-	.	source_transcript=ENST00000736416.1;source_transcript_name=TTTY8B-203;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736416.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736416.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736416.1;transcript_id=HG003_chrY_T0000439;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000439;transcript_name=HG003_chrY_T0000439;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000439:2;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6085534	6096160	1000	-	.	source_transcript=ENST00000736417.1;source_transcript_name=TTTY8B-204;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736417.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736417.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736417.1;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_G0000103;transcript_name=HG003_chrY_T0000440;gene_name=TTTY8B;ID=HG003_chrY_T0000440;Name=TTTY8B
HG003_chrY	CAT	exon	6085534	6085754	.	-	.	source_transcript=ENST00000736417.1;source_transcript_name=TTTY8B-204;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736417.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736417.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736417.1;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000440;transcript_name=HG003_chrY_T0000440;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000440:0;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6085755	6095281	.	-	.	source_transcript=ENST00000736417.1;source_transcript_name=TTTY8B-204;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736417.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736417.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736417.1;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000440;transcript_name=HG003_chrY_T0000440;gene_name=TTTY8B;ID=intron:HG003_chrY_T0000440:0;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6095282	6095486	.	-	.	source_transcript=ENST00000736417.1;source_transcript_name=TTTY8B-204;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736417.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736417.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736417.1;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000440;transcript_name=HG003_chrY_T0000440;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000440:1;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6095487	6096120	.	-	.	source_transcript=ENST00000736417.1;source_transcript_name=TTTY8B-204;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736417.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736417.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736417.1;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000440;transcript_name=HG003_chrY_T0000440;gene_name=TTTY8B;ID=intron:HG003_chrY_T0000440:1;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6096121	6096160	.	-	.	source_transcript=ENST00000736417.1;source_transcript_name=TTTY8B-204;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736417.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736417.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736417.1;transcript_id=HG003_chrY_T0000440;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000440;transcript_name=HG003_chrY_T0000440;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000440:2;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6093242	6096130	1000	-	.	source_transcript=ENST00000455570.6;source_transcript_name=TTTY8B-202;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455570.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000455570.6;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000455570.6;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_G0000103;transcript_name=HG003_chrY_T0000441;gene_name=TTTY8B;ID=HG003_chrY_T0000441;Name=TTTY8B
HG003_chrY	CAT	exon	6093242	6093418	.	-	.	source_transcript=ENST00000455570.6;source_transcript_name=TTTY8B-202;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455570.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000455570.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000455570.6;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000441;transcript_name=HG003_chrY_T0000441;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000441:0;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6093419	6095281	.	-	.	source_transcript=ENST00000455570.6;source_transcript_name=TTTY8B-202;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455570.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000455570.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000455570.6;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000441;transcript_name=HG003_chrY_T0000441;gene_name=TTTY8B;ID=intron:HG003_chrY_T0000441:0;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6095282	6095486	.	-	.	source_transcript=ENST00000455570.6;source_transcript_name=TTTY8B-202;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455570.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000455570.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000455570.6;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000441;transcript_name=HG003_chrY_T0000441;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000441:1;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6095487	6095963	.	-	.	source_transcript=ENST00000455570.6;source_transcript_name=TTTY8B-202;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455570.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000455570.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000455570.6;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000441;transcript_name=HG003_chrY_T0000441;gene_name=TTTY8B;ID=intron:HG003_chrY_T0000441:1;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6095964	6096130	.	-	.	source_transcript=ENST00000455570.6;source_transcript_name=TTTY8B-202;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455570.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000455570.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000455570.6;transcript_id=HG003_chrY_T0000441;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000441;transcript_name=HG003_chrY_T0000441;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000441:2;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6093500	6096124	1000	-	.	source_transcript=ENST00000328819.5;source_transcript_name=TTTY8B-201;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000328819.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000328819.5;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000328819.5;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_G0000103;transcript_name=HG003_chrY_T0000442;gene_name=TTTY8B;ID=HG003_chrY_T0000442;Name=TTTY8B
HG003_chrY	CAT	exon	6093500	6093689	.	-	.	source_transcript=ENST00000328819.5;source_transcript_name=TTTY8B-201;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000328819.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000328819.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000328819.5;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000442;transcript_name=HG003_chrY_T0000442;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000442:0;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6093690	6095281	.	-	.	source_transcript=ENST00000328819.5;source_transcript_name=TTTY8B-201;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000328819.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000328819.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000328819.5;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000442;transcript_name=HG003_chrY_T0000442;gene_name=TTTY8B;ID=intron:HG003_chrY_T0000442:0;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6095282	6095486	.	-	.	source_transcript=ENST00000328819.5;source_transcript_name=TTTY8B-201;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000328819.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000328819.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000328819.5;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000442;transcript_name=HG003_chrY_T0000442;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000442:1;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6095487	6095963	.	-	.	source_transcript=ENST00000328819.5;source_transcript_name=TTTY8B-201;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000328819.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000328819.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000328819.5;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000442;transcript_name=HG003_chrY_T0000442;gene_name=TTTY8B;ID=intron:HG003_chrY_T0000442:1;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6095964	6096124	.	-	.	source_transcript=ENST00000328819.5;source_transcript_name=TTTY8B-201;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000328819.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000328819.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000328819.5;transcript_id=HG003_chrY_T0000442;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000442;transcript_name=HG003_chrY_T0000442;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000442:2;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6093500	6096160	1000	-	.	source_transcript=ENST00000736418.1;source_transcript_name=TTTY8B-205;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736418.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736418.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736418.1;transcript_id=HG003_chrY_T0000443;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_G0000103;transcript_name=HG003_chrY_T0000443;gene_name=TTTY8B;ID=HG003_chrY_T0000443;Name=TTTY8B
HG003_chrY	CAT	exon	6093500	6093689	.	-	.	source_transcript=ENST00000736418.1;source_transcript_name=TTTY8B-205;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736418.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736418.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736418.1;transcript_id=HG003_chrY_T0000443;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000443;transcript_name=HG003_chrY_T0000443;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000443:0;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6093690	6095281	.	-	.	source_transcript=ENST00000736418.1;source_transcript_name=TTTY8B-205;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736418.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736418.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736418.1;transcript_id=HG003_chrY_T0000443;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000443;transcript_name=HG003_chrY_T0000443;gene_name=TTTY8B;ID=intron:HG003_chrY_T0000443:0;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6095282	6095486	.	-	.	source_transcript=ENST00000736418.1;source_transcript_name=TTTY8B-205;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736418.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736418.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736418.1;transcript_id=HG003_chrY_T0000443;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000443;transcript_name=HG003_chrY_T0000443;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000443:1;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6095487	6096120	.	-	.	source_transcript=ENST00000736418.1;source_transcript_name=TTTY8B-205;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736418.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736418.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736418.1;transcript_id=HG003_chrY_T0000443;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000443;transcript_name=HG003_chrY_T0000443;gene_name=TTTY8B;ID=intron:HG003_chrY_T0000443:1;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6096121	6096160	.	-	.	source_transcript=ENST00000736418.1;source_transcript_name=TTTY8B-205;source_gene=ENSG00000185700.11;source_gene_biotype=lncRNA;original_gene_id=ENSG00000185700.11;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000736418.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000736418.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8B;alternative_source_transcripts=ENST00000736418.1;transcript_id=HG003_chrY_T0000443;gene_id=HG003_chrY_G0000103;Parent=HG003_chrY_T0000443;transcript_name=HG003_chrY_T0000443;gene_name=TTTY8B;ID=exon:HG003_chrY_T0000443:2;Name=TTTY8B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6115450	6119231	.	-	.	source_gene_common_name=ENSG00000235895;source_gene=ENSG00000235895.1;alternative_source_transcripts=ENST00000425857.1,ENST00000425857.1;gene_id=HG003_chrY_G0000104;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000235895;gene_sources=liftoff;ID=HG003_chrY_G0000104;Name=ENSG00000235895
HG003_chrY	CAT	transcript	6115450	6119231	1000	-	.	source_transcript=ENST00000425857.1;source_transcript_name=ENST00000425857;source_gene=ENSG00000235895.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235895.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425857.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425857.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235895;alternative_source_transcripts=ENST00000425857.1,ENST00000425857.1;transcript_id=HG003_chrY_T0000444;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_G0000104;transcript_name=HG003_chrY_T0000444;gene_name=ENSG00000235895;ID=HG003_chrY_T0000444;Name=ENSG00000235895
HG003_chrY	CAT	exon	6115450	6115545	.	-	.	source_transcript=ENST00000425857.1;source_transcript_name=ENST00000425857;source_gene=ENSG00000235895.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235895.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425857.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425857.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235895;alternative_source_transcripts=ENST00000425857.1,ENST00000425857.1;transcript_id=HG003_chrY_T0000444;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000444;transcript_name=HG003_chrY_T0000444;gene_name=ENSG00000235895;ID=exon:HG003_chrY_T0000444:0;Name=ENSG00000235895;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6115546	6119058	.	-	.	source_transcript=ENST00000425857.1;source_transcript_name=ENST00000425857;source_gene=ENSG00000235895.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235895.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425857.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425857.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235895;alternative_source_transcripts=ENST00000425857.1,ENST00000425857.1;transcript_id=HG003_chrY_T0000444;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000444;transcript_name=HG003_chrY_T0000444;gene_name=ENSG00000235895;ID=intron:HG003_chrY_T0000444:0;Name=ENSG00000235895;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6119059	6119231	.	-	.	source_transcript=ENST00000425857.1;source_transcript_name=ENST00000425857;source_gene=ENSG00000235895.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235895.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425857.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425857.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235895;alternative_source_transcripts=ENST00000425857.1,ENST00000425857.1;transcript_id=HG003_chrY_T0000444;gene_id=HG003_chrY_G0000104;Parent=HG003_chrY_T0000444;transcript_name=HG003_chrY_T0000444;gene_name=ENSG00000235895;ID=exon:HG003_chrY_T0000444:1;Name=ENSG00000235895;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6142937	6143404	.	+	.	source_gene_common_name=TSPY17P;source_gene=ENSG00000232620.1;alternative_source_transcripts=ENST00000450329.1,ENST00000450329.1;gene_id=HG003_chrY_G0000105;gene_biotype=unprocessed_pseudogene;gene_name=TSPY17P;gene_sources=liftoff;ID=HG003_chrY_G0000105;Name=TSPY17P
HG003_chrY	CAT	transcript	6142937	6143404	1000	+	.	source_transcript=ENST00000450329.1;source_transcript_name=TSPY17P-201;source_gene=ENSG00000232620.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232620.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450329.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY17P;alternative_source_transcripts=ENST00000450329.1,ENST00000450329.1;transcript_id=HG003_chrY_T0000445;gene_id=HG003_chrY_G0000105;Parent=HG003_chrY_G0000105;transcript_name=HG003_chrY_T0000445;gene_name=TSPY17P;ID=HG003_chrY_T0000445;Name=TSPY17P
HG003_chrY	CAT	exon	6142937	6143404	.	+	.	source_transcript=ENST00000450329.1;source_transcript_name=TSPY17P-201;source_gene=ENSG00000232620.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232620.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450329.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY17P;alternative_source_transcripts=ENST00000450329.1,ENST00000450329.1;transcript_id=HG003_chrY_T0000445;gene_id=HG003_chrY_G0000105;Parent=HG003_chrY_T0000445;transcript_name=HG003_chrY_T0000445;gene_name=TSPY17P;ID=exon:HG003_chrY_T0000445:0;Name=TSPY17P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6325664	6325882	.	-	.	source_gene_common_name=SRIP3;source_gene=ENSG00000224953.1;alternative_source_transcripts=ENST00000413200.1,ENST00000413200.1;gene_id=HG003_chrY_G0000106;gene_biotype=processed_pseudogene;gene_name=SRIP3;gene_sources=liftoff;ID=HG003_chrY_G0000106;Name=SRIP3
HG003_chrY	CAT	transcript	6325664	6325882	1000	-	.	source_transcript=ENST00000413200.1;source_transcript_name=SRIP3-201;source_gene=ENSG00000224953.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224953.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000413200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413200.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRIP3;alternative_source_transcripts=ENST00000413200.1,ENST00000413200.1;transcript_id=HG003_chrY_T0000446;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_G0000106;transcript_name=HG003_chrY_T0000446;gene_name=SRIP3;ID=HG003_chrY_T0000446;Name=SRIP3
HG003_chrY	CAT	exon	6325664	6325882	.	-	.	source_transcript=ENST00000413200.1;source_transcript_name=SRIP3-201;source_gene=ENSG00000224953.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224953.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000413200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413200.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SRIP3;alternative_source_transcripts=ENST00000413200.1,ENST00000413200.1;transcript_id=HG003_chrY_T0000446;gene_id=HG003_chrY_G0000106;Parent=HG003_chrY_T0000446;transcript_name=HG003_chrY_T0000446;gene_name=SRIP3;ID=exon:HG003_chrY_T0000446:0;Name=SRIP3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6395855	6396046	.	+	.	source_gene_common_name=ENSG00000274365;source_gene=ENSG00000274365.1;alternative_source_transcripts=ENST00000610687.1,ENST00000610687.1;gene_id=HG003_chrY_G0000107;gene_biotype=processed_pseudogene;gene_name=ENSG00000274365;gene_sources=liftoff;ID=HG003_chrY_G0000107;Name=ENSG00000274365
HG003_chrY	CAT	transcript	6395855	6396046	1000	+	.	source_transcript=ENST00000610687.1;source_transcript_name=ENST00000610687;source_gene=ENSG00000274365.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274365.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000610687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000610687.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274365;alternative_source_transcripts=ENST00000610687.1,ENST00000610687.1;transcript_id=HG003_chrY_T0000447;gene_id=HG003_chrY_G0000107;Parent=HG003_chrY_G0000107;transcript_name=HG003_chrY_T0000447;gene_name=ENSG00000274365;ID=HG003_chrY_T0000447;Name=ENSG00000274365
HG003_chrY	CAT	exon	6395855	6396046	.	+	.	source_transcript=ENST00000610687.1;source_transcript_name=ENST00000610687;source_gene=ENSG00000274365.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274365.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000610687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000610687.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274365;alternative_source_transcripts=ENST00000610687.1,ENST00000610687.1;transcript_id=HG003_chrY_T0000447;gene_id=HG003_chrY_G0000107;Parent=HG003_chrY_T0000447;transcript_name=HG003_chrY_T0000447;gene_name=ENSG00000274365;ID=exon:HG003_chrY_T0000447:0;Name=ENSG00000274365;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6444415	6444960	.	+	.	source_gene_common_name=GOT2P5;source_gene=ENSG00000233634.1;alternative_source_transcripts=ENST00000433995.1,ENST00000433995.1;gene_id=HG003_chrY_G0000108;gene_biotype=processed_pseudogene;gene_name=GOT2P5;gene_sources=liftoff;ID=HG003_chrY_G0000108;Name=GOT2P5
HG003_chrY	CAT	transcript	6444415	6444960	1000	+	.	source_transcript=ENST00000433995.1;source_transcript_name=GOT2P5-201;source_gene=ENSG00000233634.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233634.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000433995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433995.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOT2P5;alternative_source_transcripts=ENST00000433995.1,ENST00000433995.1;transcript_id=HG003_chrY_T0000448;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_G0000108;transcript_name=HG003_chrY_T0000448;gene_name=GOT2P5;ID=HG003_chrY_T0000448;Name=GOT2P5
HG003_chrY	CAT	exon	6444415	6444960	.	+	.	source_transcript=ENST00000433995.1;source_transcript_name=GOT2P5-201;source_gene=ENSG00000233634.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233634.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000433995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433995.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOT2P5;alternative_source_transcripts=ENST00000433995.1,ENST00000433995.1;transcript_id=HG003_chrY_T0000448;gene_id=HG003_chrY_G0000108;Parent=HG003_chrY_T0000448;transcript_name=HG003_chrY_T0000448;gene_name=GOT2P5;ID=exon:HG003_chrY_T0000448:0;Name=GOT2P5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6472627	6518464	.	-	.	source_gene_common_name=AMELY;source_gene=ENSG00000099721.16;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;gene_id=HG003_chrY_G0000109;gene_biotype=protein_coding;gene_name=AMELY;gene_sources=liftoff;ID=HG003_chrY_G0000109;Name=AMELY
HG003_chrY	CAT	transcript	6472627	6518464	100	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_G0000109;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=HG003_chrY_T0000449;Name=AMELY
HG003_chrY	CAT	exon	6472627	6472787	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=exon:HG003_chrY_T0000449:0;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6472782	6472787	.	-	0	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=CDS:HG003_chrY_T0000449:0;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6472782	6472784	.	-	0	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=stop_codon:HG003_chrY_T0000449;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6472788	6474746	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=intron:HG003_chrY_T0000449:0;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6474747	6475172	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=exon:HG003_chrY_T0000449:1;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6474747	6475172	.	-	0	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=CDS:HG003_chrY_T0000449:1;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6475173	6475441	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=intron:HG003_chrY_T0000449:1;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6475442	6475486	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=exon:HG003_chrY_T0000449:2;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6475442	6475486	.	-	0	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=CDS:HG003_chrY_T0000449:2;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6475487	6476716	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=intron:HG003_chrY_T0000449:2;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6476717	6476764	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=exon:HG003_chrY_T0000449:3;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6476717	6476764	.	-	0	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=CDS:HG003_chrY_T0000449:3;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6476765	6479265	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=intron:HG003_chrY_T0000449:3;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6479266	6479331	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=exon:HG003_chrY_T0000449:4;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6479266	6479319	.	-	0	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=CDS:HG003_chrY_T0000449:4;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6479317	6479319	.	-	0	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=start_codon:HG003_chrY_T0000449;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6479332	6480682	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=intron:HG003_chrY_T0000449:4;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6480683	6480782	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=exon:HG003_chrY_T0000449:5;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6480783	6518384	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=intron:HG003_chrY_T0000449:5;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518385	6518464	.	-	.	source_transcript=ENST00000651267.2;source_transcript_name=AMELY-202;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651267.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651267.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000651267.2,ENST00000651267.2;transcript_id=HG003_chrY_T0000449;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000449;transcript_name=HG003_chrY_T0000449;gene_name=AMELY;ID=exon:HG003_chrY_T0000449:6;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6472782	6479319	100	-	.	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_G0000109;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=HG003_chrY_T0000450;Name=AMELY
HG003_chrY	CAT	exon	6472782	6472787	.	-	.	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=exon:HG003_chrY_T0000450:0;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6472782	6472787	.	-	0	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=CDS:HG003_chrY_T0000450:0;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6472782	6472784	.	-	0	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=stop_codon:HG003_chrY_T0000450;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6472788	6474746	.	-	.	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=intron:HG003_chrY_T0000450:0;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6474747	6475172	.	-	.	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=exon:HG003_chrY_T0000450:1;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6474747	6475172	.	-	0	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=CDS:HG003_chrY_T0000450:1;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6475173	6475441	.	-	.	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=intron:HG003_chrY_T0000450:1;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6475442	6475486	.	-	.	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=exon:HG003_chrY_T0000450:2;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6475442	6475486	.	-	0	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=CDS:HG003_chrY_T0000450:2;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6475487	6475577	.	-	.	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=intron:HG003_chrY_T0000450:2;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6475578	6475619	.	-	.	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=exon:HG003_chrY_T0000450:3;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6475578	6475619	.	-	0	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=CDS:HG003_chrY_T0000450:3;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6475620	6476716	.	-	.	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=intron:HG003_chrY_T0000450:3;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6476717	6476764	.	-	.	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=exon:HG003_chrY_T0000450:4;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6476717	6476764	.	-	0	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=CDS:HG003_chrY_T0000450:4;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6476765	6479265	.	-	.	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=intron:HG003_chrY_T0000450:4;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6479266	6479319	.	-	.	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=exon:HG003_chrY_T0000450:5;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6479266	6479319	.	-	0	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=CDS:HG003_chrY_T0000450:5;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6479317	6479319	.	-	0	source_transcript=ENST00000383036.1;source_transcript_name=AMELY-201;source_gene=ENSG00000099721.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000099721.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383036.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMELY;alternative_source_transcripts=ENST00000383036.1,ENST00000383036.1;transcript_id=HG003_chrY_T0000450;gene_id=HG003_chrY_G0000109;Parent=HG003_chrY_T0000450;transcript_name=HG003_chrY_T0000450;gene_name=AMELY;ID=start_codon:HG003_chrY_T0000450;Name=AMELY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6507465	6508085	.	+	.	source_gene_common_name=ATP5PFP1;source_gene=ENSG00000237701.1;gene_id=HG003_chrY_G0000110;gene_biotype=processed_pseudogene;gene_name=ATP5PFP1;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000110;Name=ATP5PFP1
HG003_chrY	CAT	transcript	6507465	6508085	1000	+	.	source_transcript=ENST00000431631.1;source_transcript_name=ATP5PFP1-201;source_gene=ENSG00000237701.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237701.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000431631.1;alignment_mode=transMap;normalized_transcript_id=ENST00000431631.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ATP5PFP1;transcript_id=HG003_chrY_T0000451;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_G0000110;transcript_name=HG003_chrY_T0000451;gene_name=ATP5PFP1;ID=HG003_chrY_T0000451;Name=ATP5PFP1
HG003_chrY	CAT	exon	6507465	6507560	.	+	.	source_transcript=ENST00000431631.1;source_transcript_name=ATP5PFP1-201;source_gene=ENSG00000237701.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237701.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000431631.1;alignment_mode=transMap;normalized_transcript_id=ENST00000431631.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ATP5PFP1;transcript_id=HG003_chrY_T0000451;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000451;transcript_name=HG003_chrY_T0000451;gene_name=ATP5PFP1;ID=exon:HG003_chrY_T0000451:0;Name=ATP5PFP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6507561	6507859	.	+	.	source_transcript=ENST00000431631.1;source_transcript_name=ATP5PFP1-201;source_gene=ENSG00000237701.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237701.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000431631.1;alignment_mode=transMap;normalized_transcript_id=ENST00000431631.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ATP5PFP1;transcript_id=HG003_chrY_T0000451;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000451;transcript_name=HG003_chrY_T0000451;gene_name=ATP5PFP1;ID=intron:HG003_chrY_T0000451:0;Name=ATP5PFP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6507860	6508085	.	+	.	source_transcript=ENST00000431631.1;source_transcript_name=ATP5PFP1-201;source_gene=ENSG00000237701.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237701.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000431631.1;alignment_mode=transMap;normalized_transcript_id=ENST00000431631.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ATP5PFP1;transcript_id=HG003_chrY_T0000451;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000451;transcript_name=HG003_chrY_T0000451;gene_name=ATP5PFP1;ID=exon:HG003_chrY_T0000451:1;Name=ATP5PFP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6507465	6508085	1000	+	.	source_transcript=ENST00000431631.1;source_transcript_name=ATP5PFP1-201;source_gene=ENSG00000237701.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237701.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000431631.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431631.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ATP5PFP1;alternative_source_transcripts=ENST00000431631.1;transcript_id=HG003_chrY_T0000452;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_G0000110;transcript_name=HG003_chrY_T0000452;gene_name=ATP5PFP1;ID=HG003_chrY_T0000452;Name=ATP5PFP1
HG003_chrY	CAT	exon	6507465	6507561	.	+	.	source_transcript=ENST00000431631.1;source_transcript_name=ATP5PFP1-201;source_gene=ENSG00000237701.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237701.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000431631.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431631.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ATP5PFP1;alternative_source_transcripts=ENST00000431631.1;transcript_id=HG003_chrY_T0000452;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000452;transcript_name=HG003_chrY_T0000452;gene_name=ATP5PFP1;ID=exon:HG003_chrY_T0000452:0;Name=ATP5PFP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6507562	6507859	.	+	.	source_transcript=ENST00000431631.1;source_transcript_name=ATP5PFP1-201;source_gene=ENSG00000237701.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237701.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000431631.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431631.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ATP5PFP1;alternative_source_transcripts=ENST00000431631.1;transcript_id=HG003_chrY_T0000452;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000452;transcript_name=HG003_chrY_T0000452;gene_name=ATP5PFP1;ID=intron:HG003_chrY_T0000452:0;Name=ATP5PFP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6507860	6508085	.	+	.	source_transcript=ENST00000431631.1;source_transcript_name=ATP5PFP1-201;source_gene=ENSG00000237701.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237701.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000431631.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431631.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ATP5PFP1;alternative_source_transcripts=ENST00000431631.1;transcript_id=HG003_chrY_T0000452;gene_id=HG003_chrY_G0000110;Parent=HG003_chrY_T0000452;transcript_name=HG003_chrY_T0000452;gene_name=ATP5PFP1;ID=exon:HG003_chrY_T0000452:1;Name=ATP5PFP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6517398	6708682	.	+	.	source_gene_common_name=TBL1Y;source_gene=ENSG00000092377.15;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;gene_id=HG003_chrY_G0000111;gene_biotype=protein_coding;gene_name=TBL1Y;gene_sources=liftoff;ID=HG003_chrY_G0000111;Name=TBL1Y
HG003_chrY	CAT	transcript	6517398	6698395	100	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_G0000111;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=HG003_chrY_T0000453;Name=TBL1Y
HG003_chrY	CAT	exon	6517398	6517694	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6518799	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518800	6518884	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6518885	6584923	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6584924	6584954	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6584955	6628163	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000453;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6698183	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000453:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6698184	6698395	.	+	.	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000453:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6698184	6698204	.	+	0	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000453:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6698202	6698204	.	+	0	source_transcript=ENST00000346432.3;source_transcript_name=TBL1Y-201;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000346432.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000346432.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000346432.3,ENST00000346432.3;transcript_id=HG003_chrY_T0000453;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000453;transcript_name=HG003_chrY_T0000453;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000453;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6517398	6698395	100	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_G0000111;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=HG003_chrY_T0000454;Name=TBL1Y
HG003_chrY	CAT	exon	6517398	6517694	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6518799	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518800	6518884	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6518885	6602519	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6602520	6602614	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6602615	6628163	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000454;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6698183	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000454:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6698184	6698395	.	+	.	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000454:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6698184	6698204	.	+	0	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000454:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6698202	6698204	.	+	0	source_transcript=ENST00000355162.6;source_transcript_name=TBL1Y-202;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355162.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355162.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000355162.6,ENST00000355162.6;transcript_id=HG003_chrY_T0000454;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000454;transcript_name=HG003_chrY_T0000454;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000454;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6517409	6698395	100	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_G0000111;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=HG003_chrY_T0000455;Name=TBL1Y
HG003_chrY	CAT	exon	6517409	6517694	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6517695	6518799	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6518800	6518884	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6518885	6584923	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6584924	6584954	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6584955	6602519	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6602520	6602614	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6602615	6628163	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6628164	6628252	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6628253	6631748	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6631749	6631856	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6631799	6631856	.	+	0	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	6631799	6631801	.	+	0	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=start_codon:HG003_chrY_T0000455;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6631857	6649692	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6649693	6649838	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6649693	6649838	.	+	2	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6649839	6670611	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6670612	6670864	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6670612	6670864	.	+	0	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6670865	6676910	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6676911	6677043	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6676911	6677043	.	+	2	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677044	6677434	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6677435	6677576	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6677435	6677576	.	+	1	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6677577	6678274	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678275	6678338	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678275	6678338	.	+	0	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:5;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678339	6678447	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6678448	6678545	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6678448	6678545	.	+	2	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:6;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6678546	6681274	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6681275	6681335	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6681275	6681335	.	+	0	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:7;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6681336	6687445	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6687446	6687567	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6687446	6687567	.	+	2	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:8;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6687568	6692609	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6692610	6692684	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6692610	6692684	.	+	0	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:9;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6692685	6693001	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:14;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693002	6693129	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693002	6693129	.	+	0	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:10;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:15;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:11;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:16;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:12;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6698183	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000455:17;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6698184	6698395	.	+	.	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000455:18;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6698184	6698204	.	+	0	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000455:13;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6698202	6698204	.	+	0	source_transcript=ENST00000383032.6;source_transcript_name=TBL1Y-203;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383032.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000383032.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000383032.6,ENST00000383032.6;transcript_id=HG003_chrY_T0000455;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000455;transcript_name=HG003_chrY_T0000455;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000455;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6693093	6708682	100	+	.	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_G0000111;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=HG003_chrY_T0000457;Name=TBL1Y
HG003_chrY	CAT	exon	6693093	6693129	.	+	.	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000457:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693093	6693129	.	+	2	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000457:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6693130	6693978	.	+	.	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000457:0;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6693979	6694144	.	+	.	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000457:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6693979	6694144	.	+	1	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000457:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6694145	6696800	.	+	.	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000457:1;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6696801	6696902	.	+	.	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000457:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6696801	6696902	.	+	0	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000457:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6696903	6707496	.	+	.	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000457:2;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6707497	6707562	.	+	.	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000457:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6707497	6707562	.	+	0	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000457:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6707563	6708530	.	+	.	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=intron:HG003_chrY_T0000457:3;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6708531	6708682	.	+	.	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=exon:HG003_chrY_T0000457:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	6708531	6708578	.	+	0	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=CDS:HG003_chrY_T0000457:4;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	6708576	6708578	.	+	0	source_transcript=ENST00000651523.1;source_transcript_name=TBL1Y-204;source_gene=ENSG00000092377.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000092377.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651523.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1Y;alternative_source_transcripts=ENST00000651523.1,ENST00000651523.1;transcript_id=HG003_chrY_T0000457;gene_id=HG003_chrY_G0000111;Parent=HG003_chrY_T0000457;transcript_name=HG003_chrY_T0000457;gene_name=TBL1Y;ID=stop_codon:HG003_chrY_T0000457;Name=TBL1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6525394	6527503	.	+	.	source_gene_common_name=ENSG00000273906;source_gene=ENSG00000273906.1;alternative_source_transcripts=ENST00000620503.1,ENST00000620503.1;gene_id=HG003_chrY_G0000112;gene_biotype=lncRNA;gene_name=ENSG00000273906;gene_sources=liftoff;ID=HG003_chrY_G0000112;Name=ENSG00000273906
HG003_chrY	CAT	transcript	6525394	6527503	1000	+	.	source_transcript=ENST00000620503.1;source_transcript_name=ENST00000620503;source_gene=ENSG00000273906.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000273906.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000620503.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000620503.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273906;alternative_source_transcripts=ENST00000620503.1,ENST00000620503.1;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_G0000112;transcript_name=HG003_chrY_T0000456;gene_name=ENSG00000273906;ID=HG003_chrY_T0000456;Name=ENSG00000273906
HG003_chrY	CAT	exon	6525394	6527503	.	+	.	source_transcript=ENST00000620503.1;source_transcript_name=ENST00000620503;source_gene=ENSG00000273906.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000273906.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000620503.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000620503.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273906;alternative_source_transcripts=ENST00000620503.1,ENST00000620503.1;transcript_id=HG003_chrY_T0000456;gene_id=HG003_chrY_G0000112;Parent=HG003_chrY_T0000456;transcript_name=HG003_chrY_T0000456;gene_name=ENSG00000273906;ID=exon:HG003_chrY_T0000456:0;Name=ENSG00000273906;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6706781	6784511	.	-	.	source_gene_common_name=ENSG00000309393;source_gene=ENSG00000309393.1;gene_id=HG003_chrY_G0000113;gene_biotype=lncRNA;gene_name=ENSG00000309393;gene_sources=liftoff;ID=HG003_chrY_G0000113;Name=ENSG00000309393
HG003_chrY	CAT	transcript	6706781	6784521	1000	-	.	source_transcript=ENST00000840710.1;source_transcript_name=ENST00000840710;source_gene=ENSG00000309393.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309393.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840710.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309393;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_G0000113;transcript_name=HG003_chrY_T0000458;gene_name=ENSG00000309393;ID=HG003_chrY_T0000458;Name=ENSG00000309393
HG003_chrY	CAT	exon	6706781	6707539	.	-	.	source_transcript=ENST00000840710.1;source_transcript_name=ENST00000840710;source_gene=ENSG00000309393.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309393.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309393;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000458;transcript_name=HG003_chrY_T0000458;gene_name=ENSG00000309393;ID=exon:HG003_chrY_T0000458:0;Name=ENSG00000309393;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6707540	6784368	.	-	.	source_transcript=ENST00000840710.1;source_transcript_name=ENST00000840710;source_gene=ENSG00000309393.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309393.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309393;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000458;transcript_name=HG003_chrY_T0000458;gene_name=ENSG00000309393;ID=intron:HG003_chrY_T0000458:0;Name=ENSG00000309393;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6784369	6784521	.	-	.	source_transcript=ENST00000840710.1;source_transcript_name=ENST00000840710;source_gene=ENSG00000309393.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309393.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309393;transcript_id=HG003_chrY_T0000458;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000458;transcript_name=HG003_chrY_T0000458;gene_name=ENSG00000309393;ID=exon:HG003_chrY_T0000458:1;Name=ENSG00000309393;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6707108	6784511	1000	-	.	source_transcript=ENST00000840711.1;source_transcript_name=ENST00000840711;source_gene=ENSG00000309393.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309393.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840711.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309393;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_G0000113;transcript_name=HG003_chrY_T0000459;gene_name=ENSG00000309393;ID=HG003_chrY_T0000459;Name=ENSG00000309393
HG003_chrY	CAT	exon	6707108	6707539	.	-	.	source_transcript=ENST00000840711.1;source_transcript_name=ENST00000840711;source_gene=ENSG00000309393.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309393.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309393;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000459;transcript_name=HG003_chrY_T0000459;gene_name=ENSG00000309393;ID=exon:HG003_chrY_T0000459:0;Name=ENSG00000309393;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6707540	6784408	.	-	.	source_transcript=ENST00000840711.1;source_transcript_name=ENST00000840711;source_gene=ENSG00000309393.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309393.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309393;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000459;transcript_name=HG003_chrY_T0000459;gene_name=ENSG00000309393;ID=intron:HG003_chrY_T0000459:0;Name=ENSG00000309393;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6784409	6784511	.	-	.	source_transcript=ENST00000840711.1;source_transcript_name=ENST00000840711;source_gene=ENSG00000309393.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309393.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309393;transcript_id=HG003_chrY_T0000459;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000459;transcript_name=HG003_chrY_T0000459;gene_name=ENSG00000309393;ID=exon:HG003_chrY_T0000459:1;Name=ENSG00000309393;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6707109	6713433	1000	-	.	source_transcript=ENST00000840712.1;source_transcript_name=ENST00000840712;source_gene=ENSG00000309393.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309393.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840712.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309393;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_G0000113;transcript_name=HG003_chrY_T0000460;gene_name=ENSG00000309393;ID=HG003_chrY_T0000460;Name=ENSG00000309393
HG003_chrY	CAT	exon	6707109	6707539	.	-	.	source_transcript=ENST00000840712.1;source_transcript_name=ENST00000840712;source_gene=ENSG00000309393.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309393.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309393;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000460;transcript_name=HG003_chrY_T0000460;gene_name=ENSG00000309393;ID=exon:HG003_chrY_T0000460:0;Name=ENSG00000309393;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6707540	6713268	.	-	.	source_transcript=ENST00000840712.1;source_transcript_name=ENST00000840712;source_gene=ENSG00000309393.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309393.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309393;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000460;transcript_name=HG003_chrY_T0000460;gene_name=ENSG00000309393;ID=intron:HG003_chrY_T0000460:0;Name=ENSG00000309393;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6713269	6713433	.	-	.	source_transcript=ENST00000840712.1;source_transcript_name=ENST00000840712;source_gene=ENSG00000309393.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309393.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309393;transcript_id=HG003_chrY_T0000460;gene_id=HG003_chrY_G0000113;Parent=HG003_chrY_T0000460;transcript_name=HG003_chrY_T0000460;gene_name=ENSG00000309393;ID=exon:HG003_chrY_T0000460:1;Name=ENSG00000309393;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6707445	6713214	.	-	.	source_gene_common_name=GPR143YP;source_gene=ENSG00000232583.1;gene_id=HG003_chrY_G0000114;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=GPR143YP;gene_sources=liftoff;ID=HG003_chrY_G0000114;Name=GPR143YP
HG003_chrY	CAT	transcript	6707445	6713214	1000	-	.	source_transcript=ENST00000434155.1;source_transcript_name=GPR143YP-201;source_gene=ENSG00000232583.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232583.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434155.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GPR143YP;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_G0000114;transcript_name=HG003_chrY_T0000461;gene_name=GPR143YP;ID=HG003_chrY_T0000461;Name=GPR143YP
HG003_chrY	CAT	exon	6707445	6707539	.	-	.	source_transcript=ENST00000434155.1;source_transcript_name=GPR143YP-201;source_gene=ENSG00000232583.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232583.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434155.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GPR143YP;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000461;transcript_name=HG003_chrY_T0000461;gene_name=GPR143YP;ID=exon:HG003_chrY_T0000461:0;Name=GPR143YP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6707540	6713104	.	-	.	source_transcript=ENST00000434155.1;source_transcript_name=GPR143YP-201;source_gene=ENSG00000232583.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232583.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434155.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GPR143YP;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000461;transcript_name=HG003_chrY_T0000461;gene_name=GPR143YP;ID=intron:HG003_chrY_T0000461:0;Name=GPR143YP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6713105	6713214	.	-	.	source_transcript=ENST00000434155.1;source_transcript_name=GPR143YP-201;source_gene=ENSG00000232583.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232583.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434155.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434155.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GPR143YP;transcript_id=HG003_chrY_T0000461;gene_id=HG003_chrY_G0000114;Parent=HG003_chrY_T0000461;transcript_name=HG003_chrY_T0000461;gene_name=GPR143YP;ID=exon:HG003_chrY_T0000461:1;Name=GPR143YP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6880679	6988251	.	+	.	source_gene_common_name=PRKY;source_gene=ENSG00000293442.2;gene_id=HG003_chrY_G0000115;gene_biotype=lncRNA;gene_name=PRKY;gene_sources=liftoff;ID=HG003_chrY_G0000115;Name=PRKY
HG003_chrY	CAT	transcript	6880679	6988251	1000	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_G0000115;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=HG003_chrY_T0000462;Name=PRKY
HG003_chrY	CAT	exon	6880679	6881185	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=exon:HG003_chrY_T0000462:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6881186	6910639	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=intron:HG003_chrY_T0000462:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6910640	6910808	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=exon:HG003_chrY_T0000462:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6910809	6932609	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=intron:HG003_chrY_T0000462:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6932610	6932873	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=exon:HG003_chrY_T0000462:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6932874	6947818	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=intron:HG003_chrY_T0000462:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6947819	6947938	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=exon:HG003_chrY_T0000462:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6947939	6962835	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=intron:HG003_chrY_T0000462:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6962836	6962931	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=exon:HG003_chrY_T0000462:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6962932	6974058	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=intron:HG003_chrY_T0000462:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6974059	6974136	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=exon:HG003_chrY_T0000462:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6974137	6978445	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=intron:HG003_chrY_T0000462:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6978446	6978592	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=exon:HG003_chrY_T0000462:6;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6978593	6982414	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=intron:HG003_chrY_T0000462:6;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6982415	6988251	.	+	.	source_transcript=ENST00000528056.5;source_transcript_name=PRKY-204;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000528056.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000528056.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000462;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000462;transcript_name=HG003_chrY_T0000462;gene_name=PRKY;ID=exon:HG003_chrY_T0000462:7;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6881284	6897464	1000	+	.	source_transcript=ENST00000700775.2;source_transcript_name=PRKY-205;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700775.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700775.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_G0000115;transcript_name=HG003_chrY_T0000464;gene_name=PRKY;ID=HG003_chrY_T0000464;Name=PRKY
HG003_chrY	CAT	exon	6881284	6881772	.	+	.	source_transcript=ENST00000700775.2;source_transcript_name=PRKY-205;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700775.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700775.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000464;transcript_name=HG003_chrY_T0000464;gene_name=PRKY;ID=exon:HG003_chrY_T0000464:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6881773	6897221	.	+	.	source_transcript=ENST00000700775.2;source_transcript_name=PRKY-205;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700775.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700775.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000464;transcript_name=HG003_chrY_T0000464;gene_name=PRKY;ID=intron:HG003_chrY_T0000464:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6897222	6897464	.	+	.	source_transcript=ENST00000700775.2;source_transcript_name=PRKY-205;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700775.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700775.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000464;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000464;transcript_name=HG003_chrY_T0000464;gene_name=PRKY;ID=exon:HG003_chrY_T0000464:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6881481	6897464	1000	+	.	source_transcript=ENST00000836384.1;source_transcript_name=PRKY-212;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836384.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836384.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_G0000115;transcript_name=HG003_chrY_T0000465;gene_name=PRKY;ID=HG003_chrY_T0000465;Name=PRKY
HG003_chrY	CAT	exon	6881481	6881772	.	+	.	source_transcript=ENST00000836384.1;source_transcript_name=PRKY-212;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836384.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836384.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000465;transcript_name=HG003_chrY_T0000465;gene_name=PRKY;ID=exon:HG003_chrY_T0000465:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6881773	6891734	.	+	.	source_transcript=ENST00000836384.1;source_transcript_name=PRKY-212;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836384.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836384.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000465;transcript_name=HG003_chrY_T0000465;gene_name=PRKY;ID=intron:HG003_chrY_T0000465:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6891735	6891826	.	+	.	source_transcript=ENST00000836384.1;source_transcript_name=PRKY-212;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836384.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836384.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000465;transcript_name=HG003_chrY_T0000465;gene_name=PRKY;ID=exon:HG003_chrY_T0000465:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6891827	6897221	.	+	.	source_transcript=ENST00000836384.1;source_transcript_name=PRKY-212;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836384.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836384.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000465;transcript_name=HG003_chrY_T0000465;gene_name=PRKY;ID=intron:HG003_chrY_T0000465:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6897222	6897464	.	+	.	source_transcript=ENST00000836384.1;source_transcript_name=PRKY-212;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836384.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836384.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000465;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000465;transcript_name=HG003_chrY_T0000465;gene_name=PRKY;ID=exon:HG003_chrY_T0000465:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6881533	6982802	1000	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_G0000115;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=HG003_chrY_T0000466;Name=PRKY
HG003_chrY	CAT	exon	6881533	6881772	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=exon:HG003_chrY_T0000466:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6881773	6910639	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=intron:HG003_chrY_T0000466:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6910640	6910808	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=exon:HG003_chrY_T0000466:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6910809	6932609	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=intron:HG003_chrY_T0000466:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6932610	6932873	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=exon:HG003_chrY_T0000466:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6932874	6934730	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=intron:HG003_chrY_T0000466:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6934731	6934852	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=exon:HG003_chrY_T0000466:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6934853	6947818	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=intron:HG003_chrY_T0000466:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6947819	6947938	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=exon:HG003_chrY_T0000466:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6947939	6962835	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=intron:HG003_chrY_T0000466:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6962836	6962931	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=exon:HG003_chrY_T0000466:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6962932	6974058	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=intron:HG003_chrY_T0000466:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6974059	6974136	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=exon:HG003_chrY_T0000466:6;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6974137	6978445	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=intron:HG003_chrY_T0000466:6;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6978446	6978592	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=exon:HG003_chrY_T0000466:7;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6978593	6982414	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=intron:HG003_chrY_T0000466:7;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6982415	6982802	.	+	.	source_transcript=ENST00000836333.1;source_transcript_name=PRKY-207;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000466;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000466;transcript_name=HG003_chrY_T0000466;gene_name=PRKY;ID=exon:HG003_chrY_T0000466:8;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6881625	6948919	1000	+	.	source_transcript=ENST00000836334.1;source_transcript_name=PRKY-208;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836334.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_G0000115;transcript_name=HG003_chrY_T0000467;gene_name=PRKY;ID=HG003_chrY_T0000467;Name=PRKY
HG003_chrY	CAT	exon	6881625	6881772	.	+	.	source_transcript=ENST00000836334.1;source_transcript_name=PRKY-208;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000467;transcript_name=HG003_chrY_T0000467;gene_name=PRKY;ID=exon:HG003_chrY_T0000467:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6881773	6910639	.	+	.	source_transcript=ENST00000836334.1;source_transcript_name=PRKY-208;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000467;transcript_name=HG003_chrY_T0000467;gene_name=PRKY;ID=intron:HG003_chrY_T0000467:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6910640	6910808	.	+	.	source_transcript=ENST00000836334.1;source_transcript_name=PRKY-208;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000467;transcript_name=HG003_chrY_T0000467;gene_name=PRKY;ID=exon:HG003_chrY_T0000467:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6910809	6932609	.	+	.	source_transcript=ENST00000836334.1;source_transcript_name=PRKY-208;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000467;transcript_name=HG003_chrY_T0000467;gene_name=PRKY;ID=intron:HG003_chrY_T0000467:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6932610	6932873	.	+	.	source_transcript=ENST00000836334.1;source_transcript_name=PRKY-208;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000467;transcript_name=HG003_chrY_T0000467;gene_name=PRKY;ID=exon:HG003_chrY_T0000467:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6932874	6947818	.	+	.	source_transcript=ENST00000836334.1;source_transcript_name=PRKY-208;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000467;transcript_name=HG003_chrY_T0000467;gene_name=PRKY;ID=intron:HG003_chrY_T0000467:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6947819	6948919	.	+	.	source_transcript=ENST00000836334.1;source_transcript_name=PRKY-208;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000467;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000467;transcript_name=HG003_chrY_T0000467;gene_name=PRKY;ID=exon:HG003_chrY_T0000467:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6881669	6983130	1000	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_G0000115;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=HG003_chrY_T0000468;Name=PRKY
HG003_chrY	CAT	exon	6881669	6881772	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=exon:HG003_chrY_T0000468:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6881773	6910639	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=intron:HG003_chrY_T0000468:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6910640	6910808	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=exon:HG003_chrY_T0000468:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6910809	6932609	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=intron:HG003_chrY_T0000468:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6932610	6932873	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=exon:HG003_chrY_T0000468:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6932874	6962835	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=intron:HG003_chrY_T0000468:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6962836	6962931	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=exon:HG003_chrY_T0000468:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6962932	6974058	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=intron:HG003_chrY_T0000468:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6974059	6974136	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=exon:HG003_chrY_T0000468:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6974137	6978445	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=intron:HG003_chrY_T0000468:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6978446	6978592	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=exon:HG003_chrY_T0000468:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6978593	6982414	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=intron:HG003_chrY_T0000468:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6982415	6983130	.	+	.	source_transcript=ENST00000836332.1;source_transcript_name=PRKY-206;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000468;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000468;transcript_name=HG003_chrY_T0000468;gene_name=PRKY;ID=exon:HG003_chrY_T0000468:6;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6932771	6935107	1000	+	.	source_transcript=ENST00000495163.1;source_transcript_name=PRKY-203;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000495163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495163.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_G0000115;transcript_name=HG003_chrY_T0000470;gene_name=PRKY;ID=HG003_chrY_T0000470;Name=PRKY
HG003_chrY	CAT	exon	6932771	6932873	.	+	.	source_transcript=ENST00000495163.1;source_transcript_name=PRKY-203;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000495163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000470;transcript_name=HG003_chrY_T0000470;gene_name=PRKY;ID=exon:HG003_chrY_T0000470:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6932874	6934730	.	+	.	source_transcript=ENST00000495163.1;source_transcript_name=PRKY-203;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000495163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000470;transcript_name=HG003_chrY_T0000470;gene_name=PRKY;ID=intron:HG003_chrY_T0000470:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6934731	6935107	.	+	.	source_transcript=ENST00000495163.1;source_transcript_name=PRKY-203;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000495163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000470;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000470;transcript_name=HG003_chrY_T0000470;gene_name=PRKY;ID=exon:HG003_chrY_T0000470:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6939734	6962924	1000	+	.	source_transcript=ENST00000472666.1;source_transcript_name=PRKY-202;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000472666.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_G0000115;transcript_name=HG003_chrY_T0000471;gene_name=PRKY;ID=HG003_chrY_T0000471;Name=PRKY
HG003_chrY	CAT	exon	6939734	6939812	.	+	.	source_transcript=ENST00000472666.1;source_transcript_name=PRKY-202;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000472666.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000471;transcript_name=HG003_chrY_T0000471;gene_name=PRKY;ID=exon:HG003_chrY_T0000471:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6939813	6947818	.	+	.	source_transcript=ENST00000472666.1;source_transcript_name=PRKY-202;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000472666.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000471;transcript_name=HG003_chrY_T0000471;gene_name=PRKY;ID=intron:HG003_chrY_T0000471:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6947819	6947938	.	+	.	source_transcript=ENST00000472666.1;source_transcript_name=PRKY-202;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000472666.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000471;transcript_name=HG003_chrY_T0000471;gene_name=PRKY;ID=exon:HG003_chrY_T0000471:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6947939	6962835	.	+	.	source_transcript=ENST00000472666.1;source_transcript_name=PRKY-202;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000472666.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000471;transcript_name=HG003_chrY_T0000471;gene_name=PRKY;ID=intron:HG003_chrY_T0000471:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6962836	6962924	.	+	.	source_transcript=ENST00000472666.1;source_transcript_name=PRKY-202;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000472666.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000471;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000471;transcript_name=HG003_chrY_T0000471;gene_name=PRKY;ID=exon:HG003_chrY_T0000471:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6946664	6982802	1000	+	.	source_transcript=ENST00000836335.1;source_transcript_name=PRKY-209;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836335.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_G0000115;transcript_name=HG003_chrY_T0000472;gene_name=PRKY;ID=HG003_chrY_T0000472;Name=PRKY
HG003_chrY	CAT	exon	6946664	6946726	.	+	.	source_transcript=ENST00000836335.1;source_transcript_name=PRKY-209;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000472;transcript_name=HG003_chrY_T0000472;gene_name=PRKY;ID=exon:HG003_chrY_T0000472:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6946727	6947818	.	+	.	source_transcript=ENST00000836335.1;source_transcript_name=PRKY-209;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000472;transcript_name=HG003_chrY_T0000472;gene_name=PRKY;ID=intron:HG003_chrY_T0000472:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6947819	6947938	.	+	.	source_transcript=ENST00000836335.1;source_transcript_name=PRKY-209;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000472;transcript_name=HG003_chrY_T0000472;gene_name=PRKY;ID=exon:HG003_chrY_T0000472:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6947939	6962835	.	+	.	source_transcript=ENST00000836335.1;source_transcript_name=PRKY-209;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000472;transcript_name=HG003_chrY_T0000472;gene_name=PRKY;ID=intron:HG003_chrY_T0000472:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6962836	6962931	.	+	.	source_transcript=ENST00000836335.1;source_transcript_name=PRKY-209;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000472;transcript_name=HG003_chrY_T0000472;gene_name=PRKY;ID=exon:HG003_chrY_T0000472:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6962932	6974058	.	+	.	source_transcript=ENST00000836335.1;source_transcript_name=PRKY-209;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000472;transcript_name=HG003_chrY_T0000472;gene_name=PRKY;ID=intron:HG003_chrY_T0000472:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6974059	6974136	.	+	.	source_transcript=ENST00000836335.1;source_transcript_name=PRKY-209;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000472;transcript_name=HG003_chrY_T0000472;gene_name=PRKY;ID=exon:HG003_chrY_T0000472:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6974137	6978445	.	+	.	source_transcript=ENST00000836335.1;source_transcript_name=PRKY-209;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000472;transcript_name=HG003_chrY_T0000472;gene_name=PRKY;ID=intron:HG003_chrY_T0000472:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6978446	6978592	.	+	.	source_transcript=ENST00000836335.1;source_transcript_name=PRKY-209;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000472;transcript_name=HG003_chrY_T0000472;gene_name=PRKY;ID=exon:HG003_chrY_T0000472:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6978593	6982414	.	+	.	source_transcript=ENST00000836335.1;source_transcript_name=PRKY-209;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000472;transcript_name=HG003_chrY_T0000472;gene_name=PRKY;ID=intron:HG003_chrY_T0000472:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6982415	6982802	.	+	.	source_transcript=ENST00000836335.1;source_transcript_name=PRKY-209;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000472;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000472;transcript_name=HG003_chrY_T0000472;gene_name=PRKY;ID=exon:HG003_chrY_T0000472:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6946665	6979818	1000	+	.	source_transcript=ENST00000836337.1;source_transcript_name=PRKY-211;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836337.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_G0000115;transcript_name=HG003_chrY_T0000473;gene_name=PRKY;ID=HG003_chrY_T0000473;Name=PRKY
HG003_chrY	CAT	exon	6946665	6946726	.	+	.	source_transcript=ENST00000836337.1;source_transcript_name=PRKY-211;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000473;transcript_name=HG003_chrY_T0000473;gene_name=PRKY;ID=exon:HG003_chrY_T0000473:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6946727	6947818	.	+	.	source_transcript=ENST00000836337.1;source_transcript_name=PRKY-211;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000473;transcript_name=HG003_chrY_T0000473;gene_name=PRKY;ID=intron:HG003_chrY_T0000473:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6947819	6947938	.	+	.	source_transcript=ENST00000836337.1;source_transcript_name=PRKY-211;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000473;transcript_name=HG003_chrY_T0000473;gene_name=PRKY;ID=exon:HG003_chrY_T0000473:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6947939	6962835	.	+	.	source_transcript=ENST00000836337.1;source_transcript_name=PRKY-211;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000473;transcript_name=HG003_chrY_T0000473;gene_name=PRKY;ID=intron:HG003_chrY_T0000473:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6962836	6962931	.	+	.	source_transcript=ENST00000836337.1;source_transcript_name=PRKY-211;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000473;transcript_name=HG003_chrY_T0000473;gene_name=PRKY;ID=exon:HG003_chrY_T0000473:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6962932	6974058	.	+	.	source_transcript=ENST00000836337.1;source_transcript_name=PRKY-211;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000473;transcript_name=HG003_chrY_T0000473;gene_name=PRKY;ID=intron:HG003_chrY_T0000473:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6974059	6974136	.	+	.	source_transcript=ENST00000836337.1;source_transcript_name=PRKY-211;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000473;transcript_name=HG003_chrY_T0000473;gene_name=PRKY;ID=exon:HG003_chrY_T0000473:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6974137	6978445	.	+	.	source_transcript=ENST00000836337.1;source_transcript_name=PRKY-211;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000473;transcript_name=HG003_chrY_T0000473;gene_name=PRKY;ID=intron:HG003_chrY_T0000473:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6978446	6978592	.	+	.	source_transcript=ENST00000836337.1;source_transcript_name=PRKY-211;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000473;transcript_name=HG003_chrY_T0000473;gene_name=PRKY;ID=exon:HG003_chrY_T0000473:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6978593	6979434	.	+	.	source_transcript=ENST00000836337.1;source_transcript_name=PRKY-211;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000473;transcript_name=HG003_chrY_T0000473;gene_name=PRKY;ID=intron:HG003_chrY_T0000473:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6979435	6979818	.	+	.	source_transcript=ENST00000836337.1;source_transcript_name=PRKY-211;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000473;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000473;transcript_name=HG003_chrY_T0000473;gene_name=PRKY;ID=exon:HG003_chrY_T0000473:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	6946723	6982803	1000	+	.	source_transcript=ENST00000836336.1;source_transcript_name=PRKY-210;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836336.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_G0000115;transcript_name=HG003_chrY_T0000474;gene_name=PRKY;ID=HG003_chrY_T0000474;Name=PRKY
HG003_chrY	CAT	exon	6946723	6946868	.	+	.	source_transcript=ENST00000836336.1;source_transcript_name=PRKY-210;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000474;transcript_name=HG003_chrY_T0000474;gene_name=PRKY;ID=exon:HG003_chrY_T0000474:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6946869	6947818	.	+	.	source_transcript=ENST00000836336.1;source_transcript_name=PRKY-210;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000474;transcript_name=HG003_chrY_T0000474;gene_name=PRKY;ID=intron:HG003_chrY_T0000474:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6947819	6947938	.	+	.	source_transcript=ENST00000836336.1;source_transcript_name=PRKY-210;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000474;transcript_name=HG003_chrY_T0000474;gene_name=PRKY;ID=exon:HG003_chrY_T0000474:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6947939	6962835	.	+	.	source_transcript=ENST00000836336.1;source_transcript_name=PRKY-210;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000474;transcript_name=HG003_chrY_T0000474;gene_name=PRKY;ID=intron:HG003_chrY_T0000474:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6962836	6962931	.	+	.	source_transcript=ENST00000836336.1;source_transcript_name=PRKY-210;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000474;transcript_name=HG003_chrY_T0000474;gene_name=PRKY;ID=exon:HG003_chrY_T0000474:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6962932	6974058	.	+	.	source_transcript=ENST00000836336.1;source_transcript_name=PRKY-210;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000474;transcript_name=HG003_chrY_T0000474;gene_name=PRKY;ID=intron:HG003_chrY_T0000474:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6974059	6974136	.	+	.	source_transcript=ENST00000836336.1;source_transcript_name=PRKY-210;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000474;transcript_name=HG003_chrY_T0000474;gene_name=PRKY;ID=exon:HG003_chrY_T0000474:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6974137	6978445	.	+	.	source_transcript=ENST00000836336.1;source_transcript_name=PRKY-210;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000474;transcript_name=HG003_chrY_T0000474;gene_name=PRKY;ID=intron:HG003_chrY_T0000474:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6978446	6978592	.	+	.	source_transcript=ENST00000836336.1;source_transcript_name=PRKY-210;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000474;transcript_name=HG003_chrY_T0000474;gene_name=PRKY;ID=exon:HG003_chrY_T0000474:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6978593	6982414	.	+	.	source_transcript=ENST00000836336.1;source_transcript_name=PRKY-210;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000474;transcript_name=HG003_chrY_T0000474;gene_name=PRKY;ID=intron:HG003_chrY_T0000474:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6982415	6982803	.	+	.	source_transcript=ENST00000836336.1;source_transcript_name=PRKY-210;source_gene=ENSG00000293442.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293442.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000836336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000836336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000474;gene_id=HG003_chrY_G0000115;Parent=HG003_chrY_T0000474;transcript_name=HG003_chrY_T0000474;gene_name=PRKY;ID=exon:HG003_chrY_T0000474:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6881020	6978571	.	+	.	source_gene_common_name=PRKY;source_gene=ENSG00000099725.15;gene_id=HG003_chrY_G0000116;gene_biotype=transcribed_unitary_pseudogene;gene_name=PRKY;gene_sources=liftoff;ID=HG003_chrY_G0000116;Name=PRKY
HG003_chrY	CAT	transcript	6881020	6978571	1000	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_G0000116;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=HG003_chrY_T0000463;Name=PRKY
HG003_chrY	CAT	exon	6881020	6881185	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=exon:HG003_chrY_T0000463:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6881186	6910639	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=intron:HG003_chrY_T0000463:0;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6910640	6910808	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=exon:HG003_chrY_T0000463:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6910809	6932609	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=intron:HG003_chrY_T0000463:1;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6932610	6932873	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=exon:HG003_chrY_T0000463:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6932874	6947818	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=intron:HG003_chrY_T0000463:2;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6947819	6947938	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=exon:HG003_chrY_T0000463:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6947939	6962835	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=intron:HG003_chrY_T0000463:3;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6962836	6962931	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=exon:HG003_chrY_T0000463:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6962932	6974058	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=intron:HG003_chrY_T0000463:4;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6974059	6974136	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=exon:HG003_chrY_T0000463:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	6974137	6978445	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=intron:HG003_chrY_T0000463:5;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	6978446	6978571	.	+	.	source_transcript=ENST00000533551.5;source_transcript_name=PRKY-201;source_gene=ENSG00000099725.15;source_gene_biotype=transcribed_unitary_pseudogene;original_gene_id=ENSG00000099725.15;gene_biotype=transcribed_unitary_pseudogene;transcript_biotype=transcribed_unitary_pseudogene;alignment_id=ENST00000533551.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000533551.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRKY;transcript_id=HG003_chrY_T0000463;gene_id=HG003_chrY_G0000116;Parent=HG003_chrY_T0000463;transcript_name=HG003_chrY_T0000463;gene_name=PRKY;ID=exon:HG003_chrY_T0000463:6;Name=PRKY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6931001	6931299	.	-	.	source_gene_common_name=RN7SKP282;source_gene=ENSG00000252633.1;alternative_source_transcripts=ENST00000516824.1,ENST00000516824.1;gene_id=HG003_chrY_G0000117;gene_biotype=misc_RNA;gene_name=RN7SKP282;gene_sources=liftoff;ID=HG003_chrY_G0000117;Name=RN7SKP282
HG003_chrY	CAT	transcript	6931001	6931299	1000	-	.	source_transcript=ENST00000516824.1;source_transcript_name=RN7SKP282-201;source_gene=ENSG00000252633.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000252633.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000516824.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516824.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RN7SKP282;alternative_source_transcripts=ENST00000516824.1,ENST00000516824.1;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000117;Parent=HG003_chrY_G0000117;transcript_name=HG003_chrY_T0000469;gene_name=RN7SKP282;ID=HG003_chrY_T0000469;Name=RN7SKP282
HG003_chrY	CAT	exon	6931001	6931299	.	-	.	source_transcript=ENST00000516824.1;source_transcript_name=RN7SKP282-201;source_gene=ENSG00000252633.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000252633.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000516824.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516824.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RN7SKP282;alternative_source_transcripts=ENST00000516824.1,ENST00000516824.1;transcript_id=HG003_chrY_T0000469;gene_id=HG003_chrY_G0000117;Parent=HG003_chrY_T0000469;transcript_name=HG003_chrY_T0000469;gene_name=RN7SKP282;ID=exon:HG003_chrY_T0000469:0;Name=RN7SKP282;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6948235	6948346	.	+	.	source_gene_common_name=Y_RNA;source_gene=ENSG00000251996.1;gene_id=HG003_chrY_G0000118;gene_biotype=misc_RNA;gene_name=Y_RNA;gene_sources=liftoff;ID=HG003_chrY_G0000118;Name=Y_RNA
HG003_chrY	CAT	transcript	6948235	6948346	1000	+	.	source_transcript=ENST00000516187.1;source_transcript_name=Y_RNA.666-201;source_gene=ENSG00000251996.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000251996.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000516187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516187.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=Y_RNA;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_G0000118;transcript_name=HG003_chrY_T0000475;gene_name=Y_RNA;ID=HG003_chrY_T0000475;Name=Y_RNA
HG003_chrY	CAT	exon	6948235	6948346	.	+	.	source_transcript=ENST00000516187.1;source_transcript_name=Y_RNA.666-201;source_gene=ENSG00000251996.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000251996.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000516187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=Y_RNA;transcript_id=HG003_chrY_T0000475;gene_id=HG003_chrY_G0000118;Parent=HG003_chrY_T0000475;transcript_name=HG003_chrY_T0000475;gene_name=Y_RNA;ID=exon:HG003_chrY_T0000475:0;Name=Y_RNA;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	6985375	6985482	.	+	.	source_gene_common_name=RNU6-941P;source_gene=ENSG00000252155.1;gene_id=HG003_chrY_G0000119;gene_biotype=snRNA;gene_name=RNU6-941P;gene_sources=liftoff;ID=HG003_chrY_G0000119;Name=RNU6-941P
HG003_chrY	CAT	transcript	6985375	6985482	1000	+	.	source_transcript=ENST00000516346.1;source_transcript_name=RNU6-941P-201;source_gene=ENSG00000252155.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252155.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516346.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-941P;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000119;Parent=HG003_chrY_G0000119;transcript_name=HG003_chrY_T0000476;gene_name=RNU6-941P;ID=HG003_chrY_T0000476;Name=RNU6-941P
HG003_chrY	CAT	exon	6985375	6985482	.	+	.	source_transcript=ENST00000516346.1;source_transcript_name=RNU6-941P-201;source_gene=ENSG00000252155.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252155.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-941P;transcript_id=HG003_chrY_T0000476;gene_id=HG003_chrY_G0000119;Parent=HG003_chrY_T0000476;transcript_name=HG003_chrY_T0000476;gene_name=RNU6-941P;ID=exon:HG003_chrY_T0000476:0;Name=RNU6-941P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7029757	7029861	.	-	.	source_gene_common_name=RNU6-521P;source_gene=ENSG00000252472.1;alternative_source_transcripts=ENST00000516663.1,ENST00000516663.1;gene_id=HG003_chrY_G0000120;gene_biotype=snRNA;gene_name=RNU6-521P;gene_sources=liftoff;ID=HG003_chrY_G0000120;Name=RNU6-521P
HG003_chrY	CAT	transcript	7029757	7029861	1000	-	.	source_transcript=ENST00000516663.1;source_transcript_name=RNU6-521P-201;source_gene=ENSG00000252472.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252472.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516663.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516663.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-521P;alternative_source_transcripts=ENST00000516663.1,ENST00000516663.1;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_G0000120;transcript_name=HG003_chrY_T0000477;gene_name=RNU6-521P;ID=HG003_chrY_T0000477;Name=RNU6-521P
HG003_chrY	CAT	exon	7029757	7029861	.	-	.	source_transcript=ENST00000516663.1;source_transcript_name=RNU6-521P-201;source_gene=ENSG00000252472.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252472.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516663.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516663.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-521P;alternative_source_transcripts=ENST00000516663.1,ENST00000516663.1;transcript_id=HG003_chrY_T0000477;gene_id=HG003_chrY_G0000120;Parent=HG003_chrY_T0000477;transcript_name=HG003_chrY_T0000477;gene_name=RNU6-521P;ID=exon:HG003_chrY_T0000477:0;Name=RNU6-521P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7041191	7127276	.	+	.	source_gene_common_name=ENSG00000295056;source_gene=ENSG00000295056.1;alternative_source_transcripts=ENST00000727700.1,ENST00000727700.1;gene_id=HG003_chrY_G0000121;gene_biotype=lncRNA;gene_name=ENSG00000295056;gene_sources=liftoff;ID=HG003_chrY_G0000121;Name=ENSG00000295056
HG003_chrY	CAT	transcript	7041191	7127276	1000	+	.	source_transcript=ENST00000727700.1;source_transcript_name=ENST00000727700;source_gene=ENSG00000295056.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295056.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000727700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000727700.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295056;alternative_source_transcripts=ENST00000727700.1,ENST00000727700.1;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_G0000121;transcript_name=HG003_chrY_T0000478;gene_name=ENSG00000295056;ID=HG003_chrY_T0000478;Name=ENSG00000295056
HG003_chrY	CAT	exon	7041191	7041280	.	+	.	source_transcript=ENST00000727700.1;source_transcript_name=ENST00000727700;source_gene=ENSG00000295056.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295056.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000727700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000727700.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295056;alternative_source_transcripts=ENST00000727700.1,ENST00000727700.1;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000478;transcript_name=HG003_chrY_T0000478;gene_name=ENSG00000295056;ID=exon:HG003_chrY_T0000478:0;Name=ENSG00000295056;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7041281	7107721	.	+	.	source_transcript=ENST00000727700.1;source_transcript_name=ENST00000727700;source_gene=ENSG00000295056.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295056.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000727700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000727700.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295056;alternative_source_transcripts=ENST00000727700.1,ENST00000727700.1;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000478;transcript_name=HG003_chrY_T0000478;gene_name=ENSG00000295056;ID=intron:HG003_chrY_T0000478:0;Name=ENSG00000295056;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7107722	7107880	.	+	.	source_transcript=ENST00000727700.1;source_transcript_name=ENST00000727700;source_gene=ENSG00000295056.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295056.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000727700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000727700.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295056;alternative_source_transcripts=ENST00000727700.1,ENST00000727700.1;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000478;transcript_name=HG003_chrY_T0000478;gene_name=ENSG00000295056;ID=exon:HG003_chrY_T0000478:1;Name=ENSG00000295056;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7107881	7125670	.	+	.	source_transcript=ENST00000727700.1;source_transcript_name=ENST00000727700;source_gene=ENSG00000295056.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295056.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000727700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000727700.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295056;alternative_source_transcripts=ENST00000727700.1,ENST00000727700.1;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000478;transcript_name=HG003_chrY_T0000478;gene_name=ENSG00000295056;ID=intron:HG003_chrY_T0000478:1;Name=ENSG00000295056;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7125671	7125779	.	+	.	source_transcript=ENST00000727700.1;source_transcript_name=ENST00000727700;source_gene=ENSG00000295056.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295056.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000727700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000727700.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295056;alternative_source_transcripts=ENST00000727700.1,ENST00000727700.1;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000478;transcript_name=HG003_chrY_T0000478;gene_name=ENSG00000295056;ID=exon:HG003_chrY_T0000478:2;Name=ENSG00000295056;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7125780	7126811	.	+	.	source_transcript=ENST00000727700.1;source_transcript_name=ENST00000727700;source_gene=ENSG00000295056.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295056.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000727700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000727700.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295056;alternative_source_transcripts=ENST00000727700.1,ENST00000727700.1;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000478;transcript_name=HG003_chrY_T0000478;gene_name=ENSG00000295056;ID=intron:HG003_chrY_T0000478:2;Name=ENSG00000295056;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7126812	7127276	.	+	.	source_transcript=ENST00000727700.1;source_transcript_name=ENST00000727700;source_gene=ENSG00000295056.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295056.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000727700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000727700.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295056;alternative_source_transcripts=ENST00000727700.1,ENST00000727700.1;transcript_id=HG003_chrY_T0000478;gene_id=HG003_chrY_G0000121;Parent=HG003_chrY_T0000478;transcript_name=HG003_chrY_T0000478;gene_name=ENSG00000295056;ID=exon:HG003_chrY_T0000478:3;Name=ENSG00000295056;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7264050	7264434	.	+	.	source_gene_common_name=ENSG00000275280;source_gene=ENSG00000275280.1;alternative_source_transcripts=ENST00000619838.1,ENST00000619838.1;gene_id=HG003_chrY_G0000122;gene_biotype=processed_pseudogene;gene_name=ENSG00000275280;gene_sources=liftoff;ID=HG003_chrY_G0000122;Name=ENSG00000275280
HG003_chrY	CAT	transcript	7264050	7264434	1000	+	.	source_transcript=ENST00000619838.1;source_transcript_name=ENST00000619838;source_gene=ENSG00000275280.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000275280.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000619838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000619838.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275280;alternative_source_transcripts=ENST00000619838.1,ENST00000619838.1;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_G0000122;transcript_name=HG003_chrY_T0000479;gene_name=ENSG00000275280;ID=HG003_chrY_T0000479;Name=ENSG00000275280
HG003_chrY	CAT	exon	7264050	7264434	.	+	.	source_transcript=ENST00000619838.1;source_transcript_name=ENST00000619838;source_gene=ENSG00000275280.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000275280.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000619838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000619838.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275280;alternative_source_transcripts=ENST00000619838.1,ENST00000619838.1;transcript_id=HG003_chrY_T0000479;gene_id=HG003_chrY_G0000122;Parent=HG003_chrY_T0000479;transcript_name=HG003_chrY_T0000479;gene_name=ENSG00000275280;ID=exon:HG003_chrY_T0000479:0;Name=ENSG00000275280;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7278799	7283080	.	-	.	source_gene_common_name=RBMY2HP;source_gene=ENSG00000238073.1;alternative_source_transcripts=ENST00000457961.1,ENST00000457961.1;gene_id=HG003_chrY_G0000123;gene_biotype=unprocessed_pseudogene;gene_name=RBMY2HP;gene_sources=liftoff;ID=HG003_chrY_G0000123;Name=RBMY2HP
HG003_chrY	CAT	transcript	7278799	7283080	1000	-	.	source_transcript=ENST00000457961.1;source_transcript_name=RBMY2HP-201;source_gene=ENSG00000238073.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238073.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457961.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2HP;alternative_source_transcripts=ENST00000457961.1,ENST00000457961.1;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_G0000123;transcript_name=HG003_chrY_T0000480;gene_name=RBMY2HP;ID=HG003_chrY_T0000480;Name=RBMY2HP
HG003_chrY	CAT	exon	7278799	7279098	.	-	.	source_transcript=ENST00000457961.1;source_transcript_name=RBMY2HP-201;source_gene=ENSG00000238073.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238073.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2HP;alternative_source_transcripts=ENST00000457961.1,ENST00000457961.1;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000480;transcript_name=HG003_chrY_T0000480;gene_name=RBMY2HP;ID=exon:HG003_chrY_T0000480:0;Name=RBMY2HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7279099	7279505	.	-	.	source_transcript=ENST00000457961.1;source_transcript_name=RBMY2HP-201;source_gene=ENSG00000238073.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238073.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2HP;alternative_source_transcripts=ENST00000457961.1,ENST00000457961.1;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000480;transcript_name=HG003_chrY_T0000480;gene_name=RBMY2HP;ID=intron:HG003_chrY_T0000480:0;Name=RBMY2HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7279506	7279594	.	-	.	source_transcript=ENST00000457961.1;source_transcript_name=RBMY2HP-201;source_gene=ENSG00000238073.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238073.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2HP;alternative_source_transcripts=ENST00000457961.1,ENST00000457961.1;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000480;transcript_name=HG003_chrY_T0000480;gene_name=RBMY2HP;ID=exon:HG003_chrY_T0000480:1;Name=RBMY2HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7279595	7279683	.	-	.	source_transcript=ENST00000457961.1;source_transcript_name=RBMY2HP-201;source_gene=ENSG00000238073.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238073.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2HP;alternative_source_transcripts=ENST00000457961.1,ENST00000457961.1;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000480;transcript_name=HG003_chrY_T0000480;gene_name=RBMY2HP;ID=intron:HG003_chrY_T0000480:1;Name=RBMY2HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7279684	7279794	.	-	.	source_transcript=ENST00000457961.1;source_transcript_name=RBMY2HP-201;source_gene=ENSG00000238073.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238073.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2HP;alternative_source_transcripts=ENST00000457961.1,ENST00000457961.1;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000480;transcript_name=HG003_chrY_T0000480;gene_name=RBMY2HP;ID=exon:HG003_chrY_T0000480:2;Name=RBMY2HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7279795	7282421	.	-	.	source_transcript=ENST00000457961.1;source_transcript_name=RBMY2HP-201;source_gene=ENSG00000238073.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238073.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2HP;alternative_source_transcripts=ENST00000457961.1,ENST00000457961.1;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000480;transcript_name=HG003_chrY_T0000480;gene_name=RBMY2HP;ID=intron:HG003_chrY_T0000480:2;Name=RBMY2HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7282422	7282527	.	-	.	source_transcript=ENST00000457961.1;source_transcript_name=RBMY2HP-201;source_gene=ENSG00000238073.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238073.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2HP;alternative_source_transcripts=ENST00000457961.1,ENST00000457961.1;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000480;transcript_name=HG003_chrY_T0000480;gene_name=RBMY2HP;ID=exon:HG003_chrY_T0000480:3;Name=RBMY2HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7282528	7282966	.	-	.	source_transcript=ENST00000457961.1;source_transcript_name=RBMY2HP-201;source_gene=ENSG00000238073.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238073.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2HP;alternative_source_transcripts=ENST00000457961.1,ENST00000457961.1;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000480;transcript_name=HG003_chrY_T0000480;gene_name=RBMY2HP;ID=intron:HG003_chrY_T0000480:3;Name=RBMY2HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7282967	7283080	.	-	.	source_transcript=ENST00000457961.1;source_transcript_name=RBMY2HP-201;source_gene=ENSG00000238073.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238073.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457961.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457961.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2HP;alternative_source_transcripts=ENST00000457961.1,ENST00000457961.1;transcript_id=HG003_chrY_T0000480;gene_id=HG003_chrY_G0000123;Parent=HG003_chrY_T0000480;transcript_name=HG003_chrY_T0000480;gene_name=RBMY2HP;ID=exon:HG003_chrY_T0000480:4;Name=RBMY2HP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7285956	7288085	.	+	.	source_gene_common_name=ENSG00000223422;source_gene=ENSG00000223422.1;alternative_source_transcripts=ENST00000439805.1,ENST00000439805.1;gene_id=HG003_chrY_G0000124;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000223422;gene_sources=liftoff;ID=HG003_chrY_G0000124;Name=ENSG00000223422
HG003_chrY	CAT	transcript	7285956	7288085	1000	+	.	source_transcript=ENST00000439805.1;source_transcript_name=ENST00000439805;source_gene=ENSG00000223422.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223422.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000439805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439805.1;transcript_score=299.849;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223422;alternative_source_transcripts=ENST00000439805.1,ENST00000439805.1;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_G0000124;transcript_name=HG003_chrY_T0000481;gene_name=ENSG00000223422;ID=HG003_chrY_T0000481;Name=ENSG00000223422
HG003_chrY	CAT	exon	7285956	7286267	.	+	.	source_transcript=ENST00000439805.1;source_transcript_name=ENST00000439805;source_gene=ENSG00000223422.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223422.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000439805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439805.1;transcript_score=299.849;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223422;alternative_source_transcripts=ENST00000439805.1,ENST00000439805.1;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000481;transcript_name=HG003_chrY_T0000481;gene_name=ENSG00000223422;ID=exon:HG003_chrY_T0000481:0;Name=ENSG00000223422;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7286268	7287323	.	+	.	source_transcript=ENST00000439805.1;source_transcript_name=ENST00000439805;source_gene=ENSG00000223422.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223422.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000439805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439805.1;transcript_score=299.849;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223422;alternative_source_transcripts=ENST00000439805.1,ENST00000439805.1;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000481;transcript_name=HG003_chrY_T0000481;gene_name=ENSG00000223422;ID=intron:HG003_chrY_T0000481:0;Name=ENSG00000223422;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7287324	7287389	.	+	.	source_transcript=ENST00000439805.1;source_transcript_name=ENST00000439805;source_gene=ENSG00000223422.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223422.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000439805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439805.1;transcript_score=299.849;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223422;alternative_source_transcripts=ENST00000439805.1,ENST00000439805.1;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000481;transcript_name=HG003_chrY_T0000481;gene_name=ENSG00000223422;ID=exon:HG003_chrY_T0000481:1;Name=ENSG00000223422;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7287390	7287584	.	+	.	source_transcript=ENST00000439805.1;source_transcript_name=ENST00000439805;source_gene=ENSG00000223422.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223422.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000439805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439805.1;transcript_score=299.849;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223422;alternative_source_transcripts=ENST00000439805.1,ENST00000439805.1;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000481;transcript_name=HG003_chrY_T0000481;gene_name=ENSG00000223422;ID=intron:HG003_chrY_T0000481:1;Name=ENSG00000223422;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7287585	7287677	.	+	.	source_transcript=ENST00000439805.1;source_transcript_name=ENST00000439805;source_gene=ENSG00000223422.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223422.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000439805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439805.1;transcript_score=299.849;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223422;alternative_source_transcripts=ENST00000439805.1,ENST00000439805.1;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000481;transcript_name=HG003_chrY_T0000481;gene_name=ENSG00000223422;ID=exon:HG003_chrY_T0000481:2;Name=ENSG00000223422;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7287678	7287776	.	+	.	source_transcript=ENST00000439805.1;source_transcript_name=ENST00000439805;source_gene=ENSG00000223422.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223422.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000439805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439805.1;transcript_score=299.849;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223422;alternative_source_transcripts=ENST00000439805.1,ENST00000439805.1;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000481;transcript_name=HG003_chrY_T0000481;gene_name=ENSG00000223422;ID=intron:HG003_chrY_T0000481:2;Name=ENSG00000223422;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7287777	7287921	.	+	.	source_transcript=ENST00000439805.1;source_transcript_name=ENST00000439805;source_gene=ENSG00000223422.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223422.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000439805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439805.1;transcript_score=299.849;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223422;alternative_source_transcripts=ENST00000439805.1,ENST00000439805.1;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000481;transcript_name=HG003_chrY_T0000481;gene_name=ENSG00000223422;ID=exon:HG003_chrY_T0000481:3;Name=ENSG00000223422;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7287922	7288039	.	+	.	source_transcript=ENST00000439805.1;source_transcript_name=ENST00000439805;source_gene=ENSG00000223422.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223422.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000439805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439805.1;transcript_score=299.849;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223422;alternative_source_transcripts=ENST00000439805.1,ENST00000439805.1;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000481;transcript_name=HG003_chrY_T0000481;gene_name=ENSG00000223422;ID=intron:HG003_chrY_T0000481:3;Name=ENSG00000223422;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7288040	7288085	.	+	.	source_transcript=ENST00000439805.1;source_transcript_name=ENST00000439805;source_gene=ENSG00000223422.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223422.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000439805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439805.1;transcript_score=299.849;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223422;alternative_source_transcripts=ENST00000439805.1,ENST00000439805.1;transcript_id=HG003_chrY_T0000481;gene_id=HG003_chrY_G0000124;Parent=HG003_chrY_T0000481;transcript_name=HG003_chrY_T0000481;gene_name=ENSG00000223422;ID=exon:HG003_chrY_T0000481:4;Name=ENSG00000223422;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7294788	7296597	.	-	.	source_gene_common_name=TSPY12P;source_gene=ENSG00000236435.1;alternative_source_transcripts=ENST00000421279.1,ENST00000421279.1;gene_id=HG003_chrY_G0000125;gene_biotype=unprocessed_pseudogene;gene_name=TSPY12P;gene_sources=liftoff;ID=HG003_chrY_G0000125;Name=TSPY12P
HG003_chrY	CAT	transcript	7294788	7296597	1000	-	.	source_transcript=ENST00000421279.1;source_transcript_name=TSPY12P-201;source_gene=ENSG00000236435.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236435.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421279.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421279.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY12P;alternative_source_transcripts=ENST00000421279.1,ENST00000421279.1;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_G0000125;transcript_name=HG003_chrY_T0000482;gene_name=TSPY12P;ID=HG003_chrY_T0000482;Name=TSPY12P
HG003_chrY	CAT	exon	7294788	7294852	.	-	.	source_transcript=ENST00000421279.1;source_transcript_name=TSPY12P-201;source_gene=ENSG00000236435.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236435.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421279.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421279.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY12P;alternative_source_transcripts=ENST00000421279.1,ENST00000421279.1;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000482;transcript_name=HG003_chrY_T0000482;gene_name=TSPY12P;ID=exon:HG003_chrY_T0000482:0;Name=TSPY12P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7294853	7294945	.	-	.	source_transcript=ENST00000421279.1;source_transcript_name=TSPY12P-201;source_gene=ENSG00000236435.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236435.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421279.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421279.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY12P;alternative_source_transcripts=ENST00000421279.1,ENST00000421279.1;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000482;transcript_name=HG003_chrY_T0000482;gene_name=TSPY12P;ID=intron:HG003_chrY_T0000482:0;Name=TSPY12P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7294946	7295091	.	-	.	source_transcript=ENST00000421279.1;source_transcript_name=TSPY12P-201;source_gene=ENSG00000236435.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236435.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421279.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421279.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY12P;alternative_source_transcripts=ENST00000421279.1,ENST00000421279.1;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000482;transcript_name=HG003_chrY_T0000482;gene_name=TSPY12P;ID=exon:HG003_chrY_T0000482:1;Name=TSPY12P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7295092	7295189	.	-	.	source_transcript=ENST00000421279.1;source_transcript_name=TSPY12P-201;source_gene=ENSG00000236435.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236435.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421279.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421279.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY12P;alternative_source_transcripts=ENST00000421279.1,ENST00000421279.1;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000482;transcript_name=HG003_chrY_T0000482;gene_name=TSPY12P;ID=intron:HG003_chrY_T0000482:1;Name=TSPY12P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7295190	7295300	.	-	.	source_transcript=ENST00000421279.1;source_transcript_name=TSPY12P-201;source_gene=ENSG00000236435.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236435.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421279.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421279.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY12P;alternative_source_transcripts=ENST00000421279.1,ENST00000421279.1;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000482;transcript_name=HG003_chrY_T0000482;gene_name=TSPY12P;ID=exon:HG003_chrY_T0000482:2;Name=TSPY12P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7295301	7295431	.	-	.	source_transcript=ENST00000421279.1;source_transcript_name=TSPY12P-201;source_gene=ENSG00000236435.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236435.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421279.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421279.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY12P;alternative_source_transcripts=ENST00000421279.1,ENST00000421279.1;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000482;transcript_name=HG003_chrY_T0000482;gene_name=TSPY12P;ID=intron:HG003_chrY_T0000482:2;Name=TSPY12P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7295432	7295505	.	-	.	source_transcript=ENST00000421279.1;source_transcript_name=TSPY12P-201;source_gene=ENSG00000236435.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236435.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421279.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421279.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY12P;alternative_source_transcripts=ENST00000421279.1,ENST00000421279.1;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000482;transcript_name=HG003_chrY_T0000482;gene_name=TSPY12P;ID=exon:HG003_chrY_T0000482:3;Name=TSPY12P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7295506	7296125	.	-	.	source_transcript=ENST00000421279.1;source_transcript_name=TSPY12P-201;source_gene=ENSG00000236435.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236435.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421279.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421279.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY12P;alternative_source_transcripts=ENST00000421279.1,ENST00000421279.1;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000482;transcript_name=HG003_chrY_T0000482;gene_name=TSPY12P;ID=intron:HG003_chrY_T0000482:3;Name=TSPY12P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7296126	7296597	.	-	.	source_transcript=ENST00000421279.1;source_transcript_name=TSPY12P-201;source_gene=ENSG00000236435.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236435.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421279.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421279.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY12P;alternative_source_transcripts=ENST00000421279.1,ENST00000421279.1;transcript_id=HG003_chrY_T0000482;gene_id=HG003_chrY_G0000125;Parent=HG003_chrY_T0000482;transcript_name=HG003_chrY_T0000482;gene_name=TSPY12P;ID=exon:HG003_chrY_T0000482:4;Name=TSPY12P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7297560	7299727	.	+	.	source_gene_common_name=ENSG00000236690;source_gene=ENSG00000236690.2;alternative_source_transcripts=ENST00000421675.1,ENST00000421675.1;gene_id=HG003_chrY_G0000126;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000236690;gene_sources=liftoff;ID=HG003_chrY_G0000126;Name=ENSG00000236690
HG003_chrY	CAT	transcript	7297560	7299727	1000	+	.	source_transcript=ENST00000421675.1;source_transcript_name=ENST00000421675;source_gene=ENSG00000236690.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236690.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421675.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236690;alternative_source_transcripts=ENST00000421675.1,ENST00000421675.1;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_G0000126;transcript_name=HG003_chrY_T0000483;gene_name=ENSG00000236690;ID=HG003_chrY_T0000483;Name=ENSG00000236690
HG003_chrY	CAT	exon	7297560	7297886	.	+	.	source_transcript=ENST00000421675.1;source_transcript_name=ENST00000421675;source_gene=ENSG00000236690.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236690.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421675.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236690;alternative_source_transcripts=ENST00000421675.1,ENST00000421675.1;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000483;transcript_name=HG003_chrY_T0000483;gene_name=ENSG00000236690;ID=exon:HG003_chrY_T0000483:0;Name=ENSG00000236690;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7297887	7299208	.	+	.	source_transcript=ENST00000421675.1;source_transcript_name=ENST00000421675;source_gene=ENSG00000236690.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236690.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421675.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236690;alternative_source_transcripts=ENST00000421675.1,ENST00000421675.1;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000483;transcript_name=HG003_chrY_T0000483;gene_name=ENSG00000236690;ID=intron:HG003_chrY_T0000483:0;Name=ENSG00000236690;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7299209	7299326	.	+	.	source_transcript=ENST00000421675.1;source_transcript_name=ENST00000421675;source_gene=ENSG00000236690.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236690.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421675.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236690;alternative_source_transcripts=ENST00000421675.1,ENST00000421675.1;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000483;transcript_name=HG003_chrY_T0000483;gene_name=ENSG00000236690;ID=exon:HG003_chrY_T0000483:1;Name=ENSG00000236690;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7299327	7299412	.	+	.	source_transcript=ENST00000421675.1;source_transcript_name=ENST00000421675;source_gene=ENSG00000236690.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236690.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421675.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236690;alternative_source_transcripts=ENST00000421675.1,ENST00000421675.1;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000483;transcript_name=HG003_chrY_T0000483;gene_name=ENSG00000236690;ID=intron:HG003_chrY_T0000483:1;Name=ENSG00000236690;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7299413	7299582	.	+	.	source_transcript=ENST00000421675.1;source_transcript_name=ENST00000421675;source_gene=ENSG00000236690.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236690.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421675.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236690;alternative_source_transcripts=ENST00000421675.1,ENST00000421675.1;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000483;transcript_name=HG003_chrY_T0000483;gene_name=ENSG00000236690;ID=exon:HG003_chrY_T0000483:2;Name=ENSG00000236690;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7299583	7299680	.	+	.	source_transcript=ENST00000421675.1;source_transcript_name=ENST00000421675;source_gene=ENSG00000236690.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236690.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421675.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236690;alternative_source_transcripts=ENST00000421675.1,ENST00000421675.1;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000483;transcript_name=HG003_chrY_T0000483;gene_name=ENSG00000236690;ID=intron:HG003_chrY_T0000483:2;Name=ENSG00000236690;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7299681	7299727	.	+	.	source_transcript=ENST00000421675.1;source_transcript_name=ENST00000421675;source_gene=ENSG00000236690.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236690.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421675.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236690;alternative_source_transcripts=ENST00000421675.1,ENST00000421675.1;transcript_id=HG003_chrY_T0000483;gene_id=HG003_chrY_G0000126;Parent=HG003_chrY_T0000483;transcript_name=HG003_chrY_T0000483;gene_name=ENSG00000236690;ID=exon:HG003_chrY_T0000483:3;Name=ENSG00000236690;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7301756	7420665	.	-	.	source_gene_common_name=TTTY16;source_gene=ENSG00000290323.2;gene_id=HG003_chrY_G0000127;gene_biotype=lncRNA;gene_name=TTTY16;gene_sources=liftoff;ID=HG003_chrY_G0000127;Name=TTTY16
HG003_chrY	CAT	transcript	7301756	7419627	1000	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=HG003_chrY_T0000484;Name=TTTY16
HG003_chrY	CAT	exon	7301756	7302166	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=exon:HG003_chrY_T0000484:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7302167	7304128	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=intron:HG003_chrY_T0000484:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7304129	7304323	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=exon:HG003_chrY_T0000484:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7304324	7306235	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=intron:HG003_chrY_T0000484:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7306236	7306536	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=exon:HG003_chrY_T0000484:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7306537	7308235	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=intron:HG003_chrY_T0000484:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7308236	7308312	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=exon:HG003_chrY_T0000484:3;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7308313	7318218	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=intron:HG003_chrY_T0000484:3;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7318219	7318367	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=exon:HG003_chrY_T0000484:4;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7318368	7319916	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=intron:HG003_chrY_T0000484:4;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7319917	7320145	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=exon:HG003_chrY_T0000484:5;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7320146	7386880	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=intron:HG003_chrY_T0000484:5;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7386881	7387064	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=exon:HG003_chrY_T0000484:6;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7387065	7419513	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=intron:HG003_chrY_T0000484:6;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7419514	7419627	.	-	.	source_transcript=ENST00000651261.1;source_transcript_name=TTTY16-202;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651261.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000484;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000484;transcript_name=HG003_chrY_T0000484;gene_name=TTTY16;ID=exon:HG003_chrY_T0000484:7;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7301759	7387587	1000	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=HG003_chrY_T0000485;Name=TTTY16
HG003_chrY	CAT	exon	7301759	7302833	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=exon:HG003_chrY_T0000485:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7302834	7304128	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=intron:HG003_chrY_T0000485:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7304129	7304323	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=exon:HG003_chrY_T0000485:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7304324	7306235	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=intron:HG003_chrY_T0000485:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7306236	7306536	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=exon:HG003_chrY_T0000485:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7306537	7308235	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=intron:HG003_chrY_T0000485:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7308236	7308312	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=exon:HG003_chrY_T0000485:3;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7308313	7318218	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=intron:HG003_chrY_T0000485:3;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7318219	7318367	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=exon:HG003_chrY_T0000485:4;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7318368	7319916	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=intron:HG003_chrY_T0000485:4;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7319917	7320145	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=exon:HG003_chrY_T0000485:5;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7320146	7380303	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=intron:HG003_chrY_T0000485:5;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7380304	7380367	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=exon:HG003_chrY_T0000485:6;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7380368	7386880	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=intron:HG003_chrY_T0000485:6;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7386881	7387064	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=exon:HG003_chrY_T0000485:7;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7387065	7387444	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=intron:HG003_chrY_T0000485:7;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7387445	7387587	.	-	.	source_transcript=ENST00000755366.1;source_transcript_name=TTTY16-205;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755366.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755366.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000485;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000485;transcript_name=HG003_chrY_T0000485;gene_name=TTTY16;ID=exon:HG003_chrY_T0000485:8;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7303609	7414071	1000	-	.	source_transcript=ENST00000755365.1;source_transcript_name=TTTY16-204;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755365.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000486;gene_name=TTTY16;ID=HG003_chrY_T0000486;Name=TTTY16
HG003_chrY	CAT	exon	7303609	7304323	.	-	.	source_transcript=ENST00000755365.1;source_transcript_name=TTTY16-204;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755365.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000486;transcript_name=HG003_chrY_T0000486;gene_name=TTTY16;ID=exon:HG003_chrY_T0000486:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7304324	7386880	.	-	.	source_transcript=ENST00000755365.1;source_transcript_name=TTTY16-204;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755365.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000486;transcript_name=HG003_chrY_T0000486;gene_name=TTTY16;ID=intron:HG003_chrY_T0000486:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7386881	7387067	.	-	.	source_transcript=ENST00000755365.1;source_transcript_name=TTTY16-204;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755365.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000486;transcript_name=HG003_chrY_T0000486;gene_name=TTTY16;ID=exon:HG003_chrY_T0000486:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7387068	7413957	.	-	.	source_transcript=ENST00000755365.1;source_transcript_name=TTTY16-204;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755365.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000486;transcript_name=HG003_chrY_T0000486;gene_name=TTTY16;ID=intron:HG003_chrY_T0000486:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7413958	7414071	.	-	.	source_transcript=ENST00000755365.1;source_transcript_name=TTTY16-204;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755365.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000486;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000486;transcript_name=HG003_chrY_T0000486;gene_name=TTTY16;ID=exon:HG003_chrY_T0000486:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7311911	7380560	1000	-	.	source_transcript=ENST00000755368.1;source_transcript_name=TTTY16-207;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755368.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000487;gene_name=TTTY16;ID=HG003_chrY_T0000487;Name=TTTY16
HG003_chrY	CAT	exon	7311911	7311971	.	-	.	source_transcript=ENST00000755368.1;source_transcript_name=TTTY16-207;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755368.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000487;transcript_name=HG003_chrY_T0000487;gene_name=TTTY16;ID=exon:HG003_chrY_T0000487:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7311972	7318218	.	-	.	source_transcript=ENST00000755368.1;source_transcript_name=TTTY16-207;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755368.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000487;transcript_name=HG003_chrY_T0000487;gene_name=TTTY16;ID=intron:HG003_chrY_T0000487:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7318219	7318367	.	-	.	source_transcript=ENST00000755368.1;source_transcript_name=TTTY16-207;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755368.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000487;transcript_name=HG003_chrY_T0000487;gene_name=TTTY16;ID=exon:HG003_chrY_T0000487:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7318368	7319916	.	-	.	source_transcript=ENST00000755368.1;source_transcript_name=TTTY16-207;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755368.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000487;transcript_name=HG003_chrY_T0000487;gene_name=TTTY16;ID=intron:HG003_chrY_T0000487:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7319917	7320145	.	-	.	source_transcript=ENST00000755368.1;source_transcript_name=TTTY16-207;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755368.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000487;transcript_name=HG003_chrY_T0000487;gene_name=TTTY16;ID=exon:HG003_chrY_T0000487:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7320146	7380303	.	-	.	source_transcript=ENST00000755368.1;source_transcript_name=TTTY16-207;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755368.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000487;transcript_name=HG003_chrY_T0000487;gene_name=TTTY16;ID=intron:HG003_chrY_T0000487:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7380304	7380560	.	-	.	source_transcript=ENST00000755368.1;source_transcript_name=TTTY16-207;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755368.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000487;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000487;transcript_name=HG003_chrY_T0000487;gene_name=TTTY16;ID=exon:HG003_chrY_T0000487:3;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7352956	7414281	1000	-	.	source_transcript=ENST00000755370.1;source_transcript_name=TTTY16-209;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755370.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755370.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000489;gene_name=TTTY16;ID=HG003_chrY_T0000489;Name=TTTY16
HG003_chrY	CAT	exon	7352956	7353396	.	-	.	source_transcript=ENST00000755370.1;source_transcript_name=TTTY16-209;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755370.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755370.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000489;transcript_name=HG003_chrY_T0000489;gene_name=TTTY16;ID=exon:HG003_chrY_T0000489:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7353397	7386880	.	-	.	source_transcript=ENST00000755370.1;source_transcript_name=TTTY16-209;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755370.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755370.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000489;transcript_name=HG003_chrY_T0000489;gene_name=TTTY16;ID=intron:HG003_chrY_T0000489:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7386881	7387067	.	-	.	source_transcript=ENST00000755370.1;source_transcript_name=TTTY16-209;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755370.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755370.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000489;transcript_name=HG003_chrY_T0000489;gene_name=TTTY16;ID=exon:HG003_chrY_T0000489:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7387068	7414174	.	-	.	source_transcript=ENST00000755370.1;source_transcript_name=TTTY16-209;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755370.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755370.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000489;transcript_name=HG003_chrY_T0000489;gene_name=TTTY16;ID=intron:HG003_chrY_T0000489:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7414175	7414281	.	-	.	source_transcript=ENST00000755370.1;source_transcript_name=TTTY16-209;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755370.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755370.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000489;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000489;transcript_name=HG003_chrY_T0000489;gene_name=TTTY16;ID=exon:HG003_chrY_T0000489:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7352956	7419561	1000	-	.	source_transcript=ENST00000755367.1;source_transcript_name=TTTY16-206;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755367.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000490;gene_name=TTTY16;ID=HG003_chrY_T0000490;Name=TTTY16
HG003_chrY	CAT	exon	7352956	7353396	.	-	.	source_transcript=ENST00000755367.1;source_transcript_name=TTTY16-206;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000490;transcript_name=HG003_chrY_T0000490;gene_name=TTTY16;ID=exon:HG003_chrY_T0000490:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7353397	7386880	.	-	.	source_transcript=ENST00000755367.1;source_transcript_name=TTTY16-206;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000490;transcript_name=HG003_chrY_T0000490;gene_name=TTTY16;ID=intron:HG003_chrY_T0000490:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7386881	7387064	.	-	.	source_transcript=ENST00000755367.1;source_transcript_name=TTTY16-206;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000490;transcript_name=HG003_chrY_T0000490;gene_name=TTTY16;ID=exon:HG003_chrY_T0000490:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7387065	7419513	.	-	.	source_transcript=ENST00000755367.1;source_transcript_name=TTTY16-206;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000490;transcript_name=HG003_chrY_T0000490;gene_name=TTTY16;ID=intron:HG003_chrY_T0000490:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7419514	7419561	.	-	.	source_transcript=ENST00000755367.1;source_transcript_name=TTTY16-206;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000490;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000490;transcript_name=HG003_chrY_T0000490;gene_name=TTTY16;ID=exon:HG003_chrY_T0000490:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7352958	7414285	1000	-	.	source_transcript=ENST00000755369.1;source_transcript_name=TTTY16-208;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755369.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755369.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000491;gene_name=TTTY16;ID=HG003_chrY_T0000491;Name=TTTY16
HG003_chrY	CAT	exon	7352958	7353396	.	-	.	source_transcript=ENST00000755369.1;source_transcript_name=TTTY16-208;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755369.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755369.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000491;transcript_name=HG003_chrY_T0000491;gene_name=TTTY16;ID=exon:HG003_chrY_T0000491:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7353397	7386880	.	-	.	source_transcript=ENST00000755369.1;source_transcript_name=TTTY16-208;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755369.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755369.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000491;transcript_name=HG003_chrY_T0000491;gene_name=TTTY16;ID=intron:HG003_chrY_T0000491:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7386881	7387064	.	-	.	source_transcript=ENST00000755369.1;source_transcript_name=TTTY16-208;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755369.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755369.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000491;transcript_name=HG003_chrY_T0000491;gene_name=TTTY16;ID=exon:HG003_chrY_T0000491:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7387065	7414174	.	-	.	source_transcript=ENST00000755369.1;source_transcript_name=TTTY16-208;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755369.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755369.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000491;transcript_name=HG003_chrY_T0000491;gene_name=TTTY16;ID=intron:HG003_chrY_T0000491:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7414175	7414285	.	-	.	source_transcript=ENST00000755369.1;source_transcript_name=TTTY16-208;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755369.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755369.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000491;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000491;transcript_name=HG003_chrY_T0000491;gene_name=TTTY16;ID=exon:HG003_chrY_T0000491:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7352964	7419621	1000	-	.	source_transcript=ENST00000442584.2;source_transcript_name=TTTY16-201;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442584.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442584.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000492;gene_name=TTTY16;ID=HG003_chrY_T0000492;Name=TTTY16
HG003_chrY	CAT	exon	7352964	7353396	.	-	.	source_transcript=ENST00000442584.2;source_transcript_name=TTTY16-201;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442584.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442584.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000492;transcript_name=HG003_chrY_T0000492;gene_name=TTTY16;ID=exon:HG003_chrY_T0000492:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7353397	7386880	.	-	.	source_transcript=ENST00000442584.2;source_transcript_name=TTTY16-201;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442584.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442584.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000492;transcript_name=HG003_chrY_T0000492;gene_name=TTTY16;ID=intron:HG003_chrY_T0000492:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7386881	7387067	.	-	.	source_transcript=ENST00000442584.2;source_transcript_name=TTTY16-201;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442584.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442584.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000492;transcript_name=HG003_chrY_T0000492;gene_name=TTTY16;ID=exon:HG003_chrY_T0000492:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7387068	7387193	.	-	.	source_transcript=ENST00000442584.2;source_transcript_name=TTTY16-201;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442584.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442584.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000492;transcript_name=HG003_chrY_T0000492;gene_name=TTTY16;ID=intron:HG003_chrY_T0000492:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7387194	7387388	.	-	.	source_transcript=ENST00000442584.2;source_transcript_name=TTTY16-201;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442584.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442584.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000492;transcript_name=HG003_chrY_T0000492;gene_name=TTTY16;ID=exon:HG003_chrY_T0000492:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7387389	7415854	.	-	.	source_transcript=ENST00000442584.2;source_transcript_name=TTTY16-201;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442584.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442584.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000492;transcript_name=HG003_chrY_T0000492;gene_name=TTTY16;ID=intron:HG003_chrY_T0000492:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7415855	7415964	.	-	.	source_transcript=ENST00000442584.2;source_transcript_name=TTTY16-201;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442584.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442584.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000492;transcript_name=HG003_chrY_T0000492;gene_name=TTTY16;ID=exon:HG003_chrY_T0000492:3;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7415965	7419513	.	-	.	source_transcript=ENST00000442584.2;source_transcript_name=TTTY16-201;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442584.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442584.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000492;transcript_name=HG003_chrY_T0000492;gene_name=TTTY16;ID=intron:HG003_chrY_T0000492:3;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7419514	7419621	.	-	.	source_transcript=ENST00000442584.2;source_transcript_name=TTTY16-201;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442584.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442584.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000492;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000492;transcript_name=HG003_chrY_T0000492;gene_name=TTTY16;ID=exon:HG003_chrY_T0000492:4;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7352964	7414212	1000	-	.	source_transcript=ENST00000755371.1;source_transcript_name=TTTY16-210;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755371.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000493;gene_name=TTTY16;ID=HG003_chrY_T0000493;Name=TTTY16
HG003_chrY	CAT	exon	7352964	7353396	.	-	.	source_transcript=ENST00000755371.1;source_transcript_name=TTTY16-210;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000493;transcript_name=HG003_chrY_T0000493;gene_name=TTTY16;ID=exon:HG003_chrY_T0000493:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7353397	7380303	.	-	.	source_transcript=ENST00000755371.1;source_transcript_name=TTTY16-210;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000493;transcript_name=HG003_chrY_T0000493;gene_name=TTTY16;ID=intron:HG003_chrY_T0000493:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7380304	7380363	.	-	.	source_transcript=ENST00000755371.1;source_transcript_name=TTTY16-210;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000493;transcript_name=HG003_chrY_T0000493;gene_name=TTTY16;ID=exon:HG003_chrY_T0000493:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7380364	7386880	.	-	.	source_transcript=ENST00000755371.1;source_transcript_name=TTTY16-210;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000493;transcript_name=HG003_chrY_T0000493;gene_name=TTTY16;ID=intron:HG003_chrY_T0000493:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7386881	7387064	.	-	.	source_transcript=ENST00000755371.1;source_transcript_name=TTTY16-210;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000493;transcript_name=HG003_chrY_T0000493;gene_name=TTTY16;ID=exon:HG003_chrY_T0000493:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7387065	7414174	.	-	.	source_transcript=ENST00000755371.1;source_transcript_name=TTTY16-210;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000493;transcript_name=HG003_chrY_T0000493;gene_name=TTTY16;ID=intron:HG003_chrY_T0000493:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7414175	7414212	.	-	.	source_transcript=ENST00000755371.1;source_transcript_name=TTTY16-210;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000493;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000493;transcript_name=HG003_chrY_T0000493;gene_name=TTTY16;ID=exon:HG003_chrY_T0000493:3;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7352964	7387601	1000	-	.	source_transcript=ENST00000755373.1;source_transcript_name=TTTY16-212;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755373.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755373.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000494;gene_name=TTTY16;ID=HG003_chrY_T0000494;Name=TTTY16
HG003_chrY	CAT	exon	7352964	7353396	.	-	.	source_transcript=ENST00000755373.1;source_transcript_name=TTTY16-212;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755373.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755373.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000494;transcript_name=HG003_chrY_T0000494;gene_name=TTTY16;ID=exon:HG003_chrY_T0000494:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7353397	7386880	.	-	.	source_transcript=ENST00000755373.1;source_transcript_name=TTTY16-212;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755373.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755373.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000494;transcript_name=HG003_chrY_T0000494;gene_name=TTTY16;ID=intron:HG003_chrY_T0000494:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7386881	7387064	.	-	.	source_transcript=ENST00000755373.1;source_transcript_name=TTTY16-212;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755373.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755373.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000494;transcript_name=HG003_chrY_T0000494;gene_name=TTTY16;ID=exon:HG003_chrY_T0000494:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7387065	7387444	.	-	.	source_transcript=ENST00000755373.1;source_transcript_name=TTTY16-212;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755373.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755373.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000494;transcript_name=HG003_chrY_T0000494;gene_name=TTTY16;ID=intron:HG003_chrY_T0000494:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7387445	7387601	.	-	.	source_transcript=ENST00000755373.1;source_transcript_name=TTTY16-212;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755373.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755373.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000494;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000494;transcript_name=HG003_chrY_T0000494;gene_name=TTTY16;ID=exon:HG003_chrY_T0000494:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7352964	7380617	1000	-	.	source_transcript=ENST00000755374.1;source_transcript_name=TTTY16-213;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755374.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000495;gene_name=TTTY16;ID=HG003_chrY_T0000495;Name=TTTY16
HG003_chrY	CAT	exon	7352964	7353396	.	-	.	source_transcript=ENST00000755374.1;source_transcript_name=TTTY16-213;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755374.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000495;transcript_name=HG003_chrY_T0000495;gene_name=TTTY16;ID=exon:HG003_chrY_T0000495:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7353397	7380303	.	-	.	source_transcript=ENST00000755374.1;source_transcript_name=TTTY16-213;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755374.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000495;transcript_name=HG003_chrY_T0000495;gene_name=TTTY16;ID=intron:HG003_chrY_T0000495:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7380304	7380617	.	-	.	source_transcript=ENST00000755374.1;source_transcript_name=TTTY16-213;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755374.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000495;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000495;transcript_name=HG003_chrY_T0000495;gene_name=TTTY16;ID=exon:HG003_chrY_T0000495:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7352964	7414169	1000	-	.	source_transcript=ENST00000755372.1;source_transcript_name=TTTY16-211;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755372.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000496;gene_name=TTTY16;ID=HG003_chrY_T0000496;Name=TTTY16
HG003_chrY	CAT	exon	7352964	7353396	.	-	.	source_transcript=ENST00000755372.1;source_transcript_name=TTTY16-211;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755372.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000496;transcript_name=HG003_chrY_T0000496;gene_name=TTTY16;ID=exon:HG003_chrY_T0000496:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7353397	7386880	.	-	.	source_transcript=ENST00000755372.1;source_transcript_name=TTTY16-211;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755372.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000496;transcript_name=HG003_chrY_T0000496;gene_name=TTTY16;ID=intron:HG003_chrY_T0000496:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7386881	7387067	.	-	.	source_transcript=ENST00000755372.1;source_transcript_name=TTTY16-211;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755372.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000496;transcript_name=HG003_chrY_T0000496;gene_name=TTTY16;ID=exon:HG003_chrY_T0000496:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7387068	7413957	.	-	.	source_transcript=ENST00000755372.1;source_transcript_name=TTTY16-211;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755372.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000496;transcript_name=HG003_chrY_T0000496;gene_name=TTTY16;ID=intron:HG003_chrY_T0000496:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7413958	7414169	.	-	.	source_transcript=ENST00000755372.1;source_transcript_name=TTTY16-211;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755372.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000496;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000496;transcript_name=HG003_chrY_T0000496;gene_name=TTTY16;ID=exon:HG003_chrY_T0000496:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7352968	7420665	1000	-	.	source_transcript=ENST00000652723.1;source_transcript_name=TTTY16-203;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652723.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_G0000127;transcript_name=HG003_chrY_T0000497;gene_name=TTTY16;ID=HG003_chrY_T0000497;Name=TTTY16
HG003_chrY	CAT	exon	7352968	7353396	.	-	.	source_transcript=ENST00000652723.1;source_transcript_name=TTTY16-203;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000497;transcript_name=HG003_chrY_T0000497;gene_name=TTTY16;ID=exon:HG003_chrY_T0000497:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7353397	7386880	.	-	.	source_transcript=ENST00000652723.1;source_transcript_name=TTTY16-203;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000497;transcript_name=HG003_chrY_T0000497;gene_name=TTTY16;ID=intron:HG003_chrY_T0000497:0;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7386881	7387064	.	-	.	source_transcript=ENST00000652723.1;source_transcript_name=TTTY16-203;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000497;transcript_name=HG003_chrY_T0000497;gene_name=TTTY16;ID=exon:HG003_chrY_T0000497:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7387065	7415854	.	-	.	source_transcript=ENST00000652723.1;source_transcript_name=TTTY16-203;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000497;transcript_name=HG003_chrY_T0000497;gene_name=TTTY16;ID=intron:HG003_chrY_T0000497:1;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7415855	7415964	.	-	.	source_transcript=ENST00000652723.1;source_transcript_name=TTTY16-203;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000497;transcript_name=HG003_chrY_T0000497;gene_name=TTTY16;ID=exon:HG003_chrY_T0000497:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7415965	7419513	.	-	.	source_transcript=ENST00000652723.1;source_transcript_name=TTTY16-203;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000497;transcript_name=HG003_chrY_T0000497;gene_name=TTTY16;ID=intron:HG003_chrY_T0000497:2;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7419514	7419602	.	-	.	source_transcript=ENST00000652723.1;source_transcript_name=TTTY16-203;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000497;transcript_name=HG003_chrY_T0000497;gene_name=TTTY16;ID=exon:HG003_chrY_T0000497:3;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7419603	7419838	.	-	.	source_transcript=ENST00000652723.1;source_transcript_name=TTTY16-203;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000497;transcript_name=HG003_chrY_T0000497;gene_name=TTTY16;ID=intron:HG003_chrY_T0000497:3;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7419839	7420665	.	-	.	source_transcript=ENST00000652723.1;source_transcript_name=TTTY16-203;source_gene=ENSG00000290323.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290323.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY16;transcript_id=HG003_chrY_T0000497;gene_id=HG003_chrY_G0000127;Parent=HG003_chrY_T0000497;transcript_name=HG003_chrY_T0000497;gene_name=TTTY16;ID=exon:HG003_chrY_T0000497:4;Name=TTTY16;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7320033	7387067	.	-	.	source_gene_common_name=RFTN1P1;source_gene=ENSG00000234795.11;gene_id=HG003_chrY_G0000128;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RFTN1P1;gene_sources=liftoff;ID=HG003_chrY_G0000128;Name=RFTN1P1
HG003_chrY	CAT	transcript	7320033	7387067	1000	-	.	source_transcript=ENST00000455527.5;source_transcript_name=RFTN1P1-201;source_gene=ENSG00000234795.11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234795.11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455527.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455527.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RFTN1P1;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_G0000128;transcript_name=HG003_chrY_T0000488;gene_name=RFTN1P1;ID=HG003_chrY_T0000488;Name=RFTN1P1
HG003_chrY	CAT	exon	7320033	7320145	.	-	.	source_transcript=ENST00000455527.5;source_transcript_name=RFTN1P1-201;source_gene=ENSG00000234795.11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234795.11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455527.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455527.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RFTN1P1;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000488;transcript_name=HG003_chrY_T0000488;gene_name=RFTN1P1;ID=exon:HG003_chrY_T0000488:0;Name=RFTN1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7320146	7332228	.	-	.	source_transcript=ENST00000455527.5;source_transcript_name=RFTN1P1-201;source_gene=ENSG00000234795.11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234795.11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455527.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455527.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RFTN1P1;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000488;transcript_name=HG003_chrY_T0000488;gene_name=RFTN1P1;ID=intron:HG003_chrY_T0000488:0;Name=RFTN1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7332229	7332431	.	-	.	source_transcript=ENST00000455527.5;source_transcript_name=RFTN1P1-201;source_gene=ENSG00000234795.11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234795.11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455527.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455527.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RFTN1P1;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000488;transcript_name=HG003_chrY_T0000488;gene_name=RFTN1P1;ID=exon:HG003_chrY_T0000488:1;Name=RFTN1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7332432	7339829	.	-	.	source_transcript=ENST00000455527.5;source_transcript_name=RFTN1P1-201;source_gene=ENSG00000234795.11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234795.11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455527.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455527.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RFTN1P1;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000488;transcript_name=HG003_chrY_T0000488;gene_name=RFTN1P1;ID=intron:HG003_chrY_T0000488:1;Name=RFTN1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7339830	7340213	.	-	.	source_transcript=ENST00000455527.5;source_transcript_name=RFTN1P1-201;source_gene=ENSG00000234795.11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234795.11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455527.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455527.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RFTN1P1;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000488;transcript_name=HG003_chrY_T0000488;gene_name=RFTN1P1;ID=exon:HG003_chrY_T0000488:2;Name=RFTN1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7340214	7359732	.	-	.	source_transcript=ENST00000455527.5;source_transcript_name=RFTN1P1-201;source_gene=ENSG00000234795.11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234795.11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455527.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455527.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RFTN1P1;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000488;transcript_name=HG003_chrY_T0000488;gene_name=RFTN1P1;ID=intron:HG003_chrY_T0000488:2;Name=RFTN1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7359733	7359841	.	-	.	source_transcript=ENST00000455527.5;source_transcript_name=RFTN1P1-201;source_gene=ENSG00000234795.11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234795.11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455527.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455527.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RFTN1P1;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000488;transcript_name=HG003_chrY_T0000488;gene_name=RFTN1P1;ID=exon:HG003_chrY_T0000488:3;Name=RFTN1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7359842	7386880	.	-	.	source_transcript=ENST00000455527.5;source_transcript_name=RFTN1P1-201;source_gene=ENSG00000234795.11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234795.11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455527.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455527.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RFTN1P1;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000488;transcript_name=HG003_chrY_T0000488;gene_name=RFTN1P1;ID=intron:HG003_chrY_T0000488:3;Name=RFTN1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7386881	7387067	.	-	.	source_transcript=ENST00000455527.5;source_transcript_name=RFTN1P1-201;source_gene=ENSG00000234795.11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234795.11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455527.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455527.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RFTN1P1;transcript_id=HG003_chrY_T0000488;gene_id=HG003_chrY_G0000128;Parent=HG003_chrY_T0000488;transcript_name=HG003_chrY_T0000488;gene_name=RFTN1P1;ID=exon:HG003_chrY_T0000488:4;Name=RFTN1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7397695	7401386	.	+	.	source_gene_common_name=ENSG00000298447;source_gene=ENSG00000298447.1;alternative_source_transcripts=ENST00000755553.1,ENST00000755553.1;gene_id=HG003_chrY_G0000129;gene_biotype=lncRNA;gene_name=ENSG00000298447;gene_sources=liftoff;ID=HG003_chrY_G0000129;Name=ENSG00000298447
HG003_chrY	CAT	transcript	7397695	7401386	1000	+	.	source_transcript=ENST00000755553.1;source_transcript_name=ENST00000755553;source_gene=ENSG00000298447.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298447.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755553.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298447;alternative_source_transcripts=ENST00000755553.1,ENST00000755553.1;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000129;Parent=HG003_chrY_G0000129;transcript_name=HG003_chrY_T0000498;gene_name=ENSG00000298447;ID=HG003_chrY_T0000498;Name=ENSG00000298447
HG003_chrY	CAT	exon	7397695	7397989	.	+	.	source_transcript=ENST00000755553.1;source_transcript_name=ENST00000755553;source_gene=ENSG00000298447.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298447.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755553.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298447;alternative_source_transcripts=ENST00000755553.1,ENST00000755553.1;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000129;Parent=HG003_chrY_T0000498;transcript_name=HG003_chrY_T0000498;gene_name=ENSG00000298447;ID=exon:HG003_chrY_T0000498:0;Name=ENSG00000298447;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7397990	7400639	.	+	.	source_transcript=ENST00000755553.1;source_transcript_name=ENST00000755553;source_gene=ENSG00000298447.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298447.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755553.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298447;alternative_source_transcripts=ENST00000755553.1,ENST00000755553.1;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000129;Parent=HG003_chrY_T0000498;transcript_name=HG003_chrY_T0000498;gene_name=ENSG00000298447;ID=intron:HG003_chrY_T0000498:0;Name=ENSG00000298447;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7400640	7401386	.	+	.	source_transcript=ENST00000755553.1;source_transcript_name=ENST00000755553;source_gene=ENSG00000298447.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298447.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755553.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298447;alternative_source_transcripts=ENST00000755553.1,ENST00000755553.1;transcript_id=HG003_chrY_T0000498;gene_id=HG003_chrY_G0000129;Parent=HG003_chrY_T0000498;transcript_name=HG003_chrY_T0000498;gene_name=ENSG00000298447;ID=exon:HG003_chrY_T0000498:1;Name=ENSG00000298447;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7414356	7425044	.	+	.	source_gene_common_name=TTTY12;source_gene=ENSG00000237048.5;alternative_source_transcripts=ENST00000413466.3,ENST00000413466.3;gene_id=HG003_chrY_G0000130;gene_biotype=lncRNA;gene_name=TTTY12;gene_sources=liftoff;ID=HG003_chrY_G0000130;Name=TTTY12
HG003_chrY	CAT	transcript	7414356	7421043	1000	+	.	source_transcript=ENST00000413466.3;source_transcript_name=TTTY12-201;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000413466.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000413466.3;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000413466.3,ENST00000413466.3;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_G0000130;transcript_name=HG003_chrY_T0000499;gene_name=TTTY12;ID=HG003_chrY_T0000499;Name=TTTY12
HG003_chrY	CAT	exon	7414356	7414422	.	+	.	source_transcript=ENST00000413466.3;source_transcript_name=TTTY12-201;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000413466.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000413466.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000413466.3,ENST00000413466.3;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000499;transcript_name=HG003_chrY_T0000499;gene_name=TTTY12;ID=exon:HG003_chrY_T0000499:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7414423	7415283	.	+	.	source_transcript=ENST00000413466.3;source_transcript_name=TTTY12-201;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000413466.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000413466.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000413466.3,ENST00000413466.3;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000499;transcript_name=HG003_chrY_T0000499;gene_name=TTTY12;ID=intron:HG003_chrY_T0000499:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7415284	7415439	.	+	.	source_transcript=ENST00000413466.3;source_transcript_name=TTTY12-201;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000413466.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000413466.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000413466.3,ENST00000413466.3;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000499;transcript_name=HG003_chrY_T0000499;gene_name=TTTY12;ID=exon:HG003_chrY_T0000499:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7415440	7420220	.	+	.	source_transcript=ENST00000413466.3;source_transcript_name=TTTY12-201;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000413466.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000413466.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000413466.3,ENST00000413466.3;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000499;transcript_name=HG003_chrY_T0000499;gene_name=TTTY12;ID=intron:HG003_chrY_T0000499:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7420221	7421043	.	+	.	source_transcript=ENST00000413466.3;source_transcript_name=TTTY12-201;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000413466.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000413466.3;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000413466.3,ENST00000413466.3;transcript_id=HG003_chrY_T0000499;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000499;transcript_name=HG003_chrY_T0000499;gene_name=TTTY12;ID=exon:HG003_chrY_T0000499:2;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7414361	7421043	1000	+	.	source_transcript=ENST00000651670.1;source_transcript_name=TTTY12-202;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651670.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000651670.1,ENST00000651670.1;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_G0000130;transcript_name=HG003_chrY_T0000500;gene_name=TTTY12;ID=HG003_chrY_T0000500;Name=TTTY12
HG003_chrY	CAT	exon	7414361	7414422	.	+	.	source_transcript=ENST00000651670.1;source_transcript_name=TTTY12-202;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651670.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000651670.1,ENST00000651670.1;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000500;transcript_name=HG003_chrY_T0000500;gene_name=TTTY12;ID=exon:HG003_chrY_T0000500:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7414423	7415283	.	+	.	source_transcript=ENST00000651670.1;source_transcript_name=TTTY12-202;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651670.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000651670.1,ENST00000651670.1;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000500;transcript_name=HG003_chrY_T0000500;gene_name=TTTY12;ID=intron:HG003_chrY_T0000500:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7415284	7415439	.	+	.	source_transcript=ENST00000651670.1;source_transcript_name=TTTY12-202;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651670.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000651670.1,ENST00000651670.1;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000500;transcript_name=HG003_chrY_T0000500;gene_name=TTTY12;ID=exon:HG003_chrY_T0000500:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7415440	7415903	.	+	.	source_transcript=ENST00000651670.1;source_transcript_name=TTTY12-202;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651670.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000651670.1,ENST00000651670.1;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000500;transcript_name=HG003_chrY_T0000500;gene_name=TTTY12;ID=intron:HG003_chrY_T0000500:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7415904	7415985	.	+	.	source_transcript=ENST00000651670.1;source_transcript_name=TTTY12-202;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651670.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000651670.1,ENST00000651670.1;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000500;transcript_name=HG003_chrY_T0000500;gene_name=TTTY12;ID=exon:HG003_chrY_T0000500:2;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7415986	7420220	.	+	.	source_transcript=ENST00000651670.1;source_transcript_name=TTTY12-202;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651670.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000651670.1,ENST00000651670.1;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000500;transcript_name=HG003_chrY_T0000500;gene_name=TTTY12;ID=intron:HG003_chrY_T0000500:2;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7420221	7421043	.	+	.	source_transcript=ENST00000651670.1;source_transcript_name=TTTY12-202;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651670.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000651670.1,ENST00000651670.1;transcript_id=HG003_chrY_T0000500;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000500;transcript_name=HG003_chrY_T0000500;gene_name=TTTY12;ID=exon:HG003_chrY_T0000500:3;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7414361	7425044	1000	+	.	source_transcript=ENST00000755458.1;source_transcript_name=TTTY12-205;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755458.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755458.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000755458.1,ENST00000755458.1;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_G0000130;transcript_name=HG003_chrY_T0000501;gene_name=TTTY12;ID=HG003_chrY_T0000501;Name=TTTY12
HG003_chrY	CAT	exon	7414361	7414422	.	+	.	source_transcript=ENST00000755458.1;source_transcript_name=TTTY12-205;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755458.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755458.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000755458.1,ENST00000755458.1;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000501;transcript_name=HG003_chrY_T0000501;gene_name=TTTY12;ID=exon:HG003_chrY_T0000501:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7414423	7415283	.	+	.	source_transcript=ENST00000755458.1;source_transcript_name=TTTY12-205;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755458.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755458.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000755458.1,ENST00000755458.1;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000501;transcript_name=HG003_chrY_T0000501;gene_name=TTTY12;ID=intron:HG003_chrY_T0000501:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7415284	7415439	.	+	.	source_transcript=ENST00000755458.1;source_transcript_name=TTTY12-205;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755458.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755458.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000755458.1,ENST00000755458.1;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000501;transcript_name=HG003_chrY_T0000501;gene_name=TTTY12;ID=exon:HG003_chrY_T0000501:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7415440	7424938	.	+	.	source_transcript=ENST00000755458.1;source_transcript_name=TTTY12-205;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755458.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755458.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000755458.1,ENST00000755458.1;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000501;transcript_name=HG003_chrY_T0000501;gene_name=TTTY12;ID=intron:HG003_chrY_T0000501:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7424939	7425044	.	+	.	source_transcript=ENST00000755458.1;source_transcript_name=TTTY12-205;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755458.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755458.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000755458.1,ENST00000755458.1;transcript_id=HG003_chrY_T0000501;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000501;transcript_name=HG003_chrY_T0000501;gene_name=TTTY12;ID=exon:HG003_chrY_T0000501:2;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7415282	7421043	1000	+	.	source_transcript=ENST00000653671.1;source_transcript_name=TTTY12-203;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653671.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000653671.1,ENST00000653671.1;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_G0000130;transcript_name=HG003_chrY_T0000502;gene_name=TTTY12;ID=HG003_chrY_T0000502;Name=TTTY12
HG003_chrY	CAT	exon	7415282	7415439	.	+	.	source_transcript=ENST00000653671.1;source_transcript_name=TTTY12-203;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653671.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000653671.1,ENST00000653671.1;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000502;transcript_name=HG003_chrY_T0000502;gene_name=TTTY12;ID=exon:HG003_chrY_T0000502:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7415440	7415903	.	+	.	source_transcript=ENST00000653671.1;source_transcript_name=TTTY12-203;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653671.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000653671.1,ENST00000653671.1;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000502;transcript_name=HG003_chrY_T0000502;gene_name=TTTY12;ID=intron:HG003_chrY_T0000502:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7415904	7415985	.	+	.	source_transcript=ENST00000653671.1;source_transcript_name=TTTY12-203;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653671.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000653671.1,ENST00000653671.1;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000502;transcript_name=HG003_chrY_T0000502;gene_name=TTTY12;ID=exon:HG003_chrY_T0000502:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7415986	7420891	.	+	.	source_transcript=ENST00000653671.1;source_transcript_name=TTTY12-203;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653671.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000653671.1,ENST00000653671.1;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000502;transcript_name=HG003_chrY_T0000502;gene_name=TTTY12;ID=intron:HG003_chrY_T0000502:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7420892	7421043	.	+	.	source_transcript=ENST00000653671.1;source_transcript_name=TTTY12-203;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653671.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000653671.1,ENST00000653671.1;transcript_id=HG003_chrY_T0000502;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000502;transcript_name=HG003_chrY_T0000502;gene_name=TTTY12;ID=exon:HG003_chrY_T0000502:2;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7418173	7421043	1000	+	.	source_transcript=ENST00000664089.1;source_transcript_name=TTTY12-204;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000664089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000664089.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000664089.1,ENST00000664089.1;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_G0000130;transcript_name=HG003_chrY_T0000503;gene_name=TTTY12;ID=HG003_chrY_T0000503;Name=TTTY12
HG003_chrY	CAT	exon	7418173	7418215	.	+	.	source_transcript=ENST00000664089.1;source_transcript_name=TTTY12-204;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000664089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000664089.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000664089.1,ENST00000664089.1;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000503;transcript_name=HG003_chrY_T0000503;gene_name=TTTY12;ID=exon:HG003_chrY_T0000503:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7418216	7420220	.	+	.	source_transcript=ENST00000664089.1;source_transcript_name=TTTY12-204;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000664089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000664089.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000664089.1,ENST00000664089.1;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000503;transcript_name=HG003_chrY_T0000503;gene_name=TTTY12;ID=intron:HG003_chrY_T0000503:0;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7420221	7421043	.	+	.	source_transcript=ENST00000664089.1;source_transcript_name=TTTY12-204;source_gene=ENSG00000237048.5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237048.5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000664089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000664089.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY12;alternative_source_transcripts=ENST00000664089.1,ENST00000664089.1;transcript_id=HG003_chrY_T0000503;gene_id=HG003_chrY_G0000130;Parent=HG003_chrY_T0000503;transcript_name=HG003_chrY_T0000503;gene_name=TTTY12;ID=exon:HG003_chrY_T0000503:1;Name=TTTY12;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7455845	7456814	.	-	.	source_gene_common_name=ENSG00000278854;source_gene=ENSG00000278854.1;alternative_source_transcripts=ENST00000621243.1,ENST00000621243.1;gene_id=HG003_chrY_G0000131;gene_biotype=processed_pseudogene;gene_name=ENSG00000278854;gene_sources=liftoff;ID=HG003_chrY_G0000131;Name=ENSG00000278854
HG003_chrY	CAT	transcript	7455845	7456814	1000	-	.	source_transcript=ENST00000621243.1;source_transcript_name=ENST00000621243;source_gene=ENSG00000278854.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000278854.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000621243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621243.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278854;alternative_source_transcripts=ENST00000621243.1,ENST00000621243.1;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000131;Parent=HG003_chrY_G0000131;transcript_name=HG003_chrY_T0000504;gene_name=ENSG00000278854;ID=HG003_chrY_T0000504;Name=ENSG00000278854
HG003_chrY	CAT	exon	7455845	7456241	.	-	.	source_transcript=ENST00000621243.1;source_transcript_name=ENST00000621243;source_gene=ENSG00000278854.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000278854.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000621243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621243.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278854;alternative_source_transcripts=ENST00000621243.1,ENST00000621243.1;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000131;Parent=HG003_chrY_T0000504;transcript_name=HG003_chrY_T0000504;gene_name=ENSG00000278854;ID=exon:HG003_chrY_T0000504:0;Name=ENSG00000278854;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7456242	7456540	.	-	.	source_transcript=ENST00000621243.1;source_transcript_name=ENST00000621243;source_gene=ENSG00000278854.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000278854.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000621243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621243.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278854;alternative_source_transcripts=ENST00000621243.1,ENST00000621243.1;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000131;Parent=HG003_chrY_T0000504;transcript_name=HG003_chrY_T0000504;gene_name=ENSG00000278854;ID=intron:HG003_chrY_T0000504:0;Name=ENSG00000278854;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7456541	7456814	.	-	.	source_transcript=ENST00000621243.1;source_transcript_name=ENST00000621243;source_gene=ENSG00000278854.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000278854.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000621243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621243.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278854;alternative_source_transcripts=ENST00000621243.1,ENST00000621243.1;transcript_id=HG003_chrY_T0000504;gene_id=HG003_chrY_G0000131;Parent=HG003_chrY_T0000504;transcript_name=HG003_chrY_T0000504;gene_name=ENSG00000278854;ID=exon:HG003_chrY_T0000504:1;Name=ENSG00000278854;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7464044	7465234	.	-	.	source_gene_common_name=ZNF92P1Y;source_gene=ENSG00000215603.4;alternative_source_transcripts=ENST00000415010.1,ENST00000415010.1;gene_id=HG003_chrY_G0000132;gene_biotype=processed_pseudogene;gene_name=ZNF92P1Y;gene_sources=liftoff;ID=HG003_chrY_G0000132;Name=ZNF92P1Y
HG003_chrY	CAT	transcript	7464044	7465234	1000	-	.	source_transcript=ENST00000415010.1;source_transcript_name=ZNF92P1Y-201;source_gene=ENSG00000215603.4;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000215603.4;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000415010.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415010.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF92P1Y;alternative_source_transcripts=ENST00000415010.1,ENST00000415010.1;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_G0000132;transcript_name=HG003_chrY_T0000505;gene_name=ZNF92P1Y;ID=HG003_chrY_T0000505;Name=ZNF92P1Y
HG003_chrY	CAT	exon	7464044	7465234	.	-	.	source_transcript=ENST00000415010.1;source_transcript_name=ZNF92P1Y-201;source_gene=ENSG00000215603.4;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000215603.4;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000415010.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415010.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF92P1Y;alternative_source_transcripts=ENST00000415010.1,ENST00000415010.1;transcript_id=HG003_chrY_T0000505;gene_id=HG003_chrY_G0000132;Parent=HG003_chrY_T0000505;transcript_name=HG003_chrY_T0000505;gene_name=ZNF92P1Y;ID=exon:HG003_chrY_T0000505:0;Name=ZNF92P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7515898	7517665	.	-	.	source_gene_common_name=ENSG00000273863;source_gene=ENSG00000273863.1;alternative_source_transcripts=ENST00000614118.1,ENST00000614118.1;gene_id=HG003_chrY_G0000133;gene_biotype=processed_pseudogene;gene_name=ENSG00000273863;gene_sources=liftoff;ID=HG003_chrY_G0000133;Name=ENSG00000273863
HG003_chrY	CAT	transcript	7515898	7517665	1000	-	.	source_transcript=ENST00000614118.1;source_transcript_name=ENST00000614118;source_gene=ENSG00000273863.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000273863.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000614118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614118.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273863;alternative_source_transcripts=ENST00000614118.1,ENST00000614118.1;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000133;Parent=HG003_chrY_G0000133;transcript_name=HG003_chrY_T0000506;gene_name=ENSG00000273863;ID=HG003_chrY_T0000506;Name=ENSG00000273863
HG003_chrY	CAT	exon	7515898	7516420	.	-	.	source_transcript=ENST00000614118.1;source_transcript_name=ENST00000614118;source_gene=ENSG00000273863.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000273863.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000614118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614118.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273863;alternative_source_transcripts=ENST00000614118.1,ENST00000614118.1;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000133;Parent=HG003_chrY_T0000506;transcript_name=HG003_chrY_T0000506;gene_name=ENSG00000273863;ID=exon:HG003_chrY_T0000506:0;Name=ENSG00000273863;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7516421	7517475	.	-	.	source_transcript=ENST00000614118.1;source_transcript_name=ENST00000614118;source_gene=ENSG00000273863.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000273863.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000614118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614118.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273863;alternative_source_transcripts=ENST00000614118.1,ENST00000614118.1;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000133;Parent=HG003_chrY_T0000506;transcript_name=HG003_chrY_T0000506;gene_name=ENSG00000273863;ID=intron:HG003_chrY_T0000506:0;Name=ENSG00000273863;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7517476	7517665	.	-	.	source_transcript=ENST00000614118.1;source_transcript_name=ENST00000614118;source_gene=ENSG00000273863.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000273863.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000614118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614118.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273863;alternative_source_transcripts=ENST00000614118.1,ENST00000614118.1;transcript_id=HG003_chrY_T0000506;gene_id=HG003_chrY_G0000133;Parent=HG003_chrY_T0000506;transcript_name=HG003_chrY_T0000506;gene_name=ENSG00000273863;ID=exon:HG003_chrY_T0000506:1;Name=ENSG00000273863;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7523784	7524452	.	-	.	source_gene_common_name=ZNF736P8Y;source_gene=ENSG00000244246.1;alternative_source_transcripts=ENST00000451913.1,ENST00000451913.1;gene_id=HG003_chrY_G0000134;gene_biotype=processed_pseudogene;gene_name=ZNF736P8Y;gene_sources=liftoff;ID=HG003_chrY_G0000134;Name=ZNF736P8Y
HG003_chrY	CAT	transcript	7523784	7524452	1000	-	.	source_transcript=ENST00000451913.1;source_transcript_name=ZNF736P8Y-201;source_gene=ENSG00000244246.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000244246.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000451913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451913.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P8Y;alternative_source_transcripts=ENST00000451913.1,ENST00000451913.1;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_G0000134;transcript_name=HG003_chrY_T0000507;gene_name=ZNF736P8Y;ID=HG003_chrY_T0000507;Name=ZNF736P8Y
HG003_chrY	CAT	exon	7523784	7524452	.	-	.	source_transcript=ENST00000451913.1;source_transcript_name=ZNF736P8Y-201;source_gene=ENSG00000244246.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000244246.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000451913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P8Y;alternative_source_transcripts=ENST00000451913.1,ENST00000451913.1;transcript_id=HG003_chrY_T0000507;gene_id=HG003_chrY_G0000134;Parent=HG003_chrY_T0000507;transcript_name=HG003_chrY_T0000507;gene_name=ZNF736P8Y;ID=exon:HG003_chrY_T0000507:0;Name=ZNF736P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7543359	7548002	.	-	.	source_gene_common_name=BPY2DP;source_gene=ENSG00000229745.1;alternative_source_transcripts=ENST00000422208.1,ENST00000422208.1;gene_id=HG003_chrY_G0000135;gene_biotype=unprocessed_pseudogene;gene_name=BPY2DP;gene_sources=liftoff;ID=HG003_chrY_G0000135;Name=BPY2DP
HG003_chrY	CAT	transcript	7543359	7548002	1000	-	.	source_transcript=ENST00000422208.1;source_transcript_name=BPY2DP-201;source_gene=ENSG00000229745.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229745.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422208.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2DP;alternative_source_transcripts=ENST00000422208.1,ENST00000422208.1;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_G0000135;transcript_name=HG003_chrY_T0000508;gene_name=BPY2DP;ID=HG003_chrY_T0000508;Name=BPY2DP
HG003_chrY	CAT	exon	7543359	7543377	.	-	.	source_transcript=ENST00000422208.1;source_transcript_name=BPY2DP-201;source_gene=ENSG00000229745.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229745.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2DP;alternative_source_transcripts=ENST00000422208.1,ENST00000422208.1;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000508;transcript_name=HG003_chrY_T0000508;gene_name=BPY2DP;ID=exon:HG003_chrY_T0000508:0;Name=BPY2DP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7543378	7544055	.	-	.	source_transcript=ENST00000422208.1;source_transcript_name=BPY2DP-201;source_gene=ENSG00000229745.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229745.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2DP;alternative_source_transcripts=ENST00000422208.1,ENST00000422208.1;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000508;transcript_name=HG003_chrY_T0000508;gene_name=BPY2DP;ID=intron:HG003_chrY_T0000508:0;Name=BPY2DP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7544056	7544161	.	-	.	source_transcript=ENST00000422208.1;source_transcript_name=BPY2DP-201;source_gene=ENSG00000229745.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229745.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2DP;alternative_source_transcripts=ENST00000422208.1,ENST00000422208.1;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000508;transcript_name=HG003_chrY_T0000508;gene_name=BPY2DP;ID=exon:HG003_chrY_T0000508:1;Name=BPY2DP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7544162	7546996	.	-	.	source_transcript=ENST00000422208.1;source_transcript_name=BPY2DP-201;source_gene=ENSG00000229745.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229745.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2DP;alternative_source_transcripts=ENST00000422208.1,ENST00000422208.1;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000508;transcript_name=HG003_chrY_T0000508;gene_name=BPY2DP;ID=intron:HG003_chrY_T0000508:1;Name=BPY2DP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7546997	7547066	.	-	.	source_transcript=ENST00000422208.1;source_transcript_name=BPY2DP-201;source_gene=ENSG00000229745.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229745.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2DP;alternative_source_transcripts=ENST00000422208.1,ENST00000422208.1;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000508;transcript_name=HG003_chrY_T0000508;gene_name=BPY2DP;ID=exon:HG003_chrY_T0000508:2;Name=BPY2DP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7547067	7547932	.	-	.	source_transcript=ENST00000422208.1;source_transcript_name=BPY2DP-201;source_gene=ENSG00000229745.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229745.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2DP;alternative_source_transcripts=ENST00000422208.1,ENST00000422208.1;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000508;transcript_name=HG003_chrY_T0000508;gene_name=BPY2DP;ID=intron:HG003_chrY_T0000508:2;Name=BPY2DP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7547933	7548002	.	-	.	source_transcript=ENST00000422208.1;source_transcript_name=BPY2DP-201;source_gene=ENSG00000229745.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229745.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2DP;alternative_source_transcripts=ENST00000422208.1,ENST00000422208.1;transcript_id=HG003_chrY_T0000508;gene_id=HG003_chrY_G0000135;Parent=HG003_chrY_T0000508;transcript_name=HG003_chrY_T0000508;gene_name=BPY2DP;ID=exon:HG003_chrY_T0000508:3;Name=BPY2DP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7601357	7602176	.	-	.	source_gene_common_name=ZNF736P7Y;source_gene=ENSG00000241200.1;alternative_source_transcripts=ENST00000425158.1,ENST00000425158.1;gene_id=HG003_chrY_G0000136;gene_biotype=processed_pseudogene;gene_name=ZNF736P7Y;gene_sources=liftoff;ID=HG003_chrY_G0000136;Name=ZNF736P7Y
HG003_chrY	CAT	transcript	7601357	7602176	1000	-	.	source_transcript=ENST00000425158.1;source_transcript_name=ZNF736P7Y-201;source_gene=ENSG00000241200.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000241200.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000425158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425158.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P7Y;alternative_source_transcripts=ENST00000425158.1,ENST00000425158.1;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_G0000136;transcript_name=HG003_chrY_T0000509;gene_name=ZNF736P7Y;ID=HG003_chrY_T0000509;Name=ZNF736P7Y
HG003_chrY	CAT	exon	7601357	7602176	.	-	.	source_transcript=ENST00000425158.1;source_transcript_name=ZNF736P7Y-201;source_gene=ENSG00000241200.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000241200.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000425158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425158.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P7Y;alternative_source_transcripts=ENST00000425158.1,ENST00000425158.1;transcript_id=HG003_chrY_T0000509;gene_id=HG003_chrY_G0000136;Parent=HG003_chrY_T0000509;transcript_name=HG003_chrY_T0000509;gene_name=ZNF736P7Y;ID=exon:HG003_chrY_T0000509:0;Name=ZNF736P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7678820	7736669	.	-	.	source_gene_common_name=ENSG00000293305;source_gene=ENSG00000293305.2;gene_id=HG003_chrY_G0000137;gene_biotype=lncRNA;gene_name=ENSG00000293305;gene_sources=liftoff;ID=HG003_chrY_G0000137;Name=ENSG00000293305
HG003_chrY	CAT	transcript	7678820	7736669	1000	-	.	source_transcript=ENST00000651148.1;source_transcript_name=ENST00000651148;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651148.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_G0000137;transcript_name=HG003_chrY_T0000510;gene_name=ENSG00000293305;ID=HG003_chrY_T0000510;Name=ENSG00000293305
HG003_chrY	CAT	exon	7678820	7680492	.	-	.	source_transcript=ENST00000651148.1;source_transcript_name=ENST00000651148;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000510;transcript_name=HG003_chrY_T0000510;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000510:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7680493	7687365	.	-	.	source_transcript=ENST00000651148.1;source_transcript_name=ENST00000651148;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000510;transcript_name=HG003_chrY_T0000510;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000510:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7687366	7687550	.	-	.	source_transcript=ENST00000651148.1;source_transcript_name=ENST00000651148;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000510;transcript_name=HG003_chrY_T0000510;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000510:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7687551	7722225	.	-	.	source_transcript=ENST00000651148.1;source_transcript_name=ENST00000651148;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000510;transcript_name=HG003_chrY_T0000510;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000510:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7722226	7722340	.	-	.	source_transcript=ENST00000651148.1;source_transcript_name=ENST00000651148;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000510;transcript_name=HG003_chrY_T0000510;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000510:2;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7722341	7736459	.	-	.	source_transcript=ENST00000651148.1;source_transcript_name=ENST00000651148;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000510;transcript_name=HG003_chrY_T0000510;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000510:2;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7736460	7736669	.	-	.	source_transcript=ENST00000651148.1;source_transcript_name=ENST00000651148;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651148.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000510;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000510;transcript_name=HG003_chrY_T0000510;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000510:3;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7680247	7736668	1000	-	.	source_transcript=ENST00000726686.1;source_transcript_name=ENST00000726686;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726686.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726686.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_G0000137;transcript_name=HG003_chrY_T0000512;gene_name=ENSG00000293305;ID=HG003_chrY_T0000512;Name=ENSG00000293305
HG003_chrY	CAT	exon	7680247	7680492	.	-	.	source_transcript=ENST00000726686.1;source_transcript_name=ENST00000726686;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726686.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726686.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000512;transcript_name=HG003_chrY_T0000512;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000512:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7680493	7722225	.	-	.	source_transcript=ENST00000726686.1;source_transcript_name=ENST00000726686;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726686.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726686.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000512;transcript_name=HG003_chrY_T0000512;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000512:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7722226	7722340	.	-	.	source_transcript=ENST00000726686.1;source_transcript_name=ENST00000726686;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726686.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726686.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000512;transcript_name=HG003_chrY_T0000512;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000512:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7722341	7736433	.	-	.	source_transcript=ENST00000726686.1;source_transcript_name=ENST00000726686;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726686.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726686.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000512;transcript_name=HG003_chrY_T0000512;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000512:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7736434	7736668	.	-	.	source_transcript=ENST00000726686.1;source_transcript_name=ENST00000726686;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726686.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726686.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000512;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000512;transcript_name=HG003_chrY_T0000512;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000512:2;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7680252	7736657	1000	-	.	source_transcript=ENST00000726687.1;source_transcript_name=ENST00000726687;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726687.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_G0000137;transcript_name=HG003_chrY_T0000513;gene_name=ENSG00000293305;ID=HG003_chrY_T0000513;Name=ENSG00000293305
HG003_chrY	CAT	exon	7680252	7680492	.	-	.	source_transcript=ENST00000726687.1;source_transcript_name=ENST00000726687;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726687.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000513;transcript_name=HG003_chrY_T0000513;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000513:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7680493	7736433	.	-	.	source_transcript=ENST00000726687.1;source_transcript_name=ENST00000726687;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726687.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000513;transcript_name=HG003_chrY_T0000513;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000513:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7736434	7736657	.	-	.	source_transcript=ENST00000726687.1;source_transcript_name=ENST00000726687;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726687.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726687.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000513;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000513;transcript_name=HG003_chrY_T0000513;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000513:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7680252	7736710	1000	-	.	source_transcript=ENST00000700787.2;source_transcript_name=ENST00000700787;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700787.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700787.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_G0000137;transcript_name=HG003_chrY_T0000514;gene_name=ENSG00000293305;ID=HG003_chrY_T0000514;Name=ENSG00000293305
HG003_chrY	CAT	exon	7680252	7680492	.	-	.	source_transcript=ENST00000700787.2;source_transcript_name=ENST00000700787;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700787.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700787.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000514;transcript_name=HG003_chrY_T0000514;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000514:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7680493	7687365	.	-	.	source_transcript=ENST00000700787.2;source_transcript_name=ENST00000700787;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700787.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700787.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000514;transcript_name=HG003_chrY_T0000514;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000514:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7687366	7687550	.	-	.	source_transcript=ENST00000700787.2;source_transcript_name=ENST00000700787;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700787.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700787.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000514;transcript_name=HG003_chrY_T0000514;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000514:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7687551	7722225	.	-	.	source_transcript=ENST00000700787.2;source_transcript_name=ENST00000700787;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700787.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700787.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000514;transcript_name=HG003_chrY_T0000514;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000514:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7722226	7722340	.	-	.	source_transcript=ENST00000700787.2;source_transcript_name=ENST00000700787;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700787.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700787.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000514;transcript_name=HG003_chrY_T0000514;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000514:2;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7722341	7736433	.	-	.	source_transcript=ENST00000700787.2;source_transcript_name=ENST00000700787;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700787.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700787.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000514;transcript_name=HG003_chrY_T0000514;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000514:2;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7736434	7736710	.	-	.	source_transcript=ENST00000700787.2;source_transcript_name=ENST00000700787;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700787.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700787.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000514;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000514;transcript_name=HG003_chrY_T0000514;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000514:3;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7680252	7736619	1000	-	.	source_transcript=ENST00000726688.1;source_transcript_name=ENST00000726688;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726688.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_G0000137;transcript_name=HG003_chrY_T0000515;gene_name=ENSG00000293305;ID=HG003_chrY_T0000515;Name=ENSG00000293305
HG003_chrY	CAT	exon	7680252	7680492	.	-	.	source_transcript=ENST00000726688.1;source_transcript_name=ENST00000726688;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726688.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000515;transcript_name=HG003_chrY_T0000515;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000515:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7680493	7687365	.	-	.	source_transcript=ENST00000726688.1;source_transcript_name=ENST00000726688;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726688.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000515;transcript_name=HG003_chrY_T0000515;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000515:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7687366	7687550	.	-	.	source_transcript=ENST00000726688.1;source_transcript_name=ENST00000726688;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726688.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000515;transcript_name=HG003_chrY_T0000515;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000515:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7687551	7736433	.	-	.	source_transcript=ENST00000726688.1;source_transcript_name=ENST00000726688;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726688.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000515;transcript_name=HG003_chrY_T0000515;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000515:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7736434	7736619	.	-	.	source_transcript=ENST00000726688.1;source_transcript_name=ENST00000726688;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726688.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726688.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000515;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000515;transcript_name=HG003_chrY_T0000515;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000515:2;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7680252	7702447	1000	-	.	source_transcript=ENST00000726691.1;source_transcript_name=ENST00000726691;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726691.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_G0000137;transcript_name=HG003_chrY_T0000516;gene_name=ENSG00000293305;ID=HG003_chrY_T0000516;Name=ENSG00000293305
HG003_chrY	CAT	exon	7680252	7680492	.	-	.	source_transcript=ENST00000726691.1;source_transcript_name=ENST00000726691;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726691.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000516;transcript_name=HG003_chrY_T0000516;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000516:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7680493	7687427	.	-	.	source_transcript=ENST00000726691.1;source_transcript_name=ENST00000726691;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726691.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000516;transcript_name=HG003_chrY_T0000516;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000516:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7687428	7687550	.	-	.	source_transcript=ENST00000726691.1;source_transcript_name=ENST00000726691;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726691.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000516;transcript_name=HG003_chrY_T0000516;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000516:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7687551	7702408	.	-	.	source_transcript=ENST00000726691.1;source_transcript_name=ENST00000726691;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726691.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000516;transcript_name=HG003_chrY_T0000516;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000516:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7702409	7702447	.	-	.	source_transcript=ENST00000726691.1;source_transcript_name=ENST00000726691;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726691.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726691.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000516;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000516;transcript_name=HG003_chrY_T0000516;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000516:2;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7680255	7702445	1000	-	.	source_transcript=ENST00000726692.1;source_transcript_name=ENST00000726692;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726692.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726692.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_G0000137;transcript_name=HG003_chrY_T0000517;gene_name=ENSG00000293305;ID=HG003_chrY_T0000517;Name=ENSG00000293305
HG003_chrY	CAT	exon	7680255	7680492	.	-	.	source_transcript=ENST00000726692.1;source_transcript_name=ENST00000726692;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726692.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726692.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000517;transcript_name=HG003_chrY_T0000517;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000517:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7680493	7687365	.	-	.	source_transcript=ENST00000726692.1;source_transcript_name=ENST00000726692;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726692.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726692.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000517;transcript_name=HG003_chrY_T0000517;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000517:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7687366	7687550	.	-	.	source_transcript=ENST00000726692.1;source_transcript_name=ENST00000726692;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726692.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726692.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000517;transcript_name=HG003_chrY_T0000517;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000517:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7687551	7702408	.	-	.	source_transcript=ENST00000726692.1;source_transcript_name=ENST00000726692;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726692.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726692.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000517;transcript_name=HG003_chrY_T0000517;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000517:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7702409	7702445	.	-	.	source_transcript=ENST00000726692.1;source_transcript_name=ENST00000726692;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726692.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726692.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000517;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000517;transcript_name=HG003_chrY_T0000517;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000517:2;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7680256	7702501	1000	-	.	source_transcript=ENST00000726690.1;source_transcript_name=ENST00000726690;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726690.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_G0000137;transcript_name=HG003_chrY_T0000518;gene_name=ENSG00000293305;ID=HG003_chrY_T0000518;Name=ENSG00000293305
HG003_chrY	CAT	exon	7680256	7680492	.	-	.	source_transcript=ENST00000726690.1;source_transcript_name=ENST00000726690;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726690.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000518;transcript_name=HG003_chrY_T0000518;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000518:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7680493	7687365	.	-	.	source_transcript=ENST00000726690.1;source_transcript_name=ENST00000726690;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726690.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000518;transcript_name=HG003_chrY_T0000518;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000518:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7687366	7687550	.	-	.	source_transcript=ENST00000726690.1;source_transcript_name=ENST00000726690;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726690.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000518;transcript_name=HG003_chrY_T0000518;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000518:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7687551	7701973	.	-	.	source_transcript=ENST00000726690.1;source_transcript_name=ENST00000726690;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726690.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000518;transcript_name=HG003_chrY_T0000518;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000518:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7701974	7702124	.	-	.	source_transcript=ENST00000726690.1;source_transcript_name=ENST00000726690;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726690.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000518;transcript_name=HG003_chrY_T0000518;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000518:2;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7702125	7702408	.	-	.	source_transcript=ENST00000726690.1;source_transcript_name=ENST00000726690;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726690.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000518;transcript_name=HG003_chrY_T0000518;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000518:2;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7702409	7702501	.	-	.	source_transcript=ENST00000726690.1;source_transcript_name=ENST00000726690;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726690.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000518;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000518;transcript_name=HG003_chrY_T0000518;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000518:3;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7680256	7736619	1000	-	.	source_transcript=ENST00000726689.1;source_transcript_name=ENST00000726689;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726689.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_G0000137;transcript_name=HG003_chrY_T0000519;gene_name=ENSG00000293305;ID=HG003_chrY_T0000519;Name=ENSG00000293305
HG003_chrY	CAT	exon	7680256	7680492	.	-	.	source_transcript=ENST00000726689.1;source_transcript_name=ENST00000726689;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726689.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000519;transcript_name=HG003_chrY_T0000519;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000519:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7680493	7687427	.	-	.	source_transcript=ENST00000726689.1;source_transcript_name=ENST00000726689;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726689.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000519;transcript_name=HG003_chrY_T0000519;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000519:0;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7687428	7687550	.	-	.	source_transcript=ENST00000726689.1;source_transcript_name=ENST00000726689;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726689.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000519;transcript_name=HG003_chrY_T0000519;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000519:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7687551	7736433	.	-	.	source_transcript=ENST00000726689.1;source_transcript_name=ENST00000726689;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726689.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000519;transcript_name=HG003_chrY_T0000519;gene_name=ENSG00000293305;ID=intron:HG003_chrY_T0000519:1;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7736434	7736619	.	-	.	source_transcript=ENST00000726689.1;source_transcript_name=ENST00000726689;source_gene=ENSG00000293305.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293305.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726689.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726689.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293305;transcript_id=HG003_chrY_T0000519;gene_id=HG003_chrY_G0000137;Parent=HG003_chrY_T0000519;transcript_name=HG003_chrY_T0000519;gene_name=ENSG00000293305;ID=exon:HG003_chrY_T0000519:2;Name=ENSG00000293305;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7679271	7681098	.	-	.	source_gene_common_name=ZNF736P9Y;source_gene=ENSG00000239893.4;gene_id=HG003_chrY_G0000138;gene_biotype=transcribed_processed_pseudogene;gene_name=ZNF736P9Y;gene_sources=liftoff;ID=HG003_chrY_G0000138;Name=ZNF736P9Y
HG003_chrY	CAT	transcript	7679271	7681098	1000	-	.	source_transcript=ENST00000439586.1;source_transcript_name=ZNF736P9Y-201;source_gene=ENSG00000239893.4;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000239893.4;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000439586.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439586.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P9Y;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_G0000138;transcript_name=HG003_chrY_T0000511;gene_name=ZNF736P9Y;ID=HG003_chrY_T0000511;Name=ZNF736P9Y
HG003_chrY	CAT	exon	7679271	7680493	.	-	.	source_transcript=ENST00000439586.1;source_transcript_name=ZNF736P9Y-201;source_gene=ENSG00000239893.4;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000239893.4;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000439586.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439586.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P9Y;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000511;transcript_name=HG003_chrY_T0000511;gene_name=ZNF736P9Y;ID=exon:HG003_chrY_T0000511:0;Name=ZNF736P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7680494	7680976	.	-	.	source_transcript=ENST00000439586.1;source_transcript_name=ZNF736P9Y-201;source_gene=ENSG00000239893.4;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000239893.4;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000439586.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439586.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P9Y;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000511;transcript_name=HG003_chrY_T0000511;gene_name=ZNF736P9Y;ID=intron:HG003_chrY_T0000511:0;Name=ZNF736P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7680977	7681098	.	-	.	source_transcript=ENST00000439586.1;source_transcript_name=ZNF736P9Y-201;source_gene=ENSG00000239893.4;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000239893.4;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000439586.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439586.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P9Y;transcript_id=HG003_chrY_T0000511;gene_id=HG003_chrY_G0000138;Parent=HG003_chrY_T0000511;transcript_name=HG003_chrY_T0000511;gene_name=ZNF736P9Y;ID=exon:HG003_chrY_T0000511:1;Name=ZNF736P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7737506	7754579	.	+	.	source_gene_common_name=RBMY2JP;source_gene=ENSG00000227204.1;gene_id=HG003_chrY_G0000139;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RBMY2JP;gene_sources=liftoff;ID=HG003_chrY_G0000139;Name=RBMY2JP
HG003_chrY	CAT	transcript	7737506	7754579	1000	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_G0000139;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=HG003_chrY_T0000520;Name=RBMY2JP
HG003_chrY	CAT	exon	7737506	7737614	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=exon:HG003_chrY_T0000520:0;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7737615	7739608	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=intron:HG003_chrY_T0000520:0;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7739609	7739611	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=exon:HG003_chrY_T0000520:1;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7739612	7742023	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=intron:HG003_chrY_T0000520:1;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7742024	7742201	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=exon:HG003_chrY_T0000520:2;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7742202	7744060	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=intron:HG003_chrY_T0000520:2;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7744061	7744176	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=exon:HG003_chrY_T0000520:3;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7744177	7744501	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=intron:HG003_chrY_T0000520:3;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7744502	7744538	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=exon:HG003_chrY_T0000520:4;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7744539	7752601	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=intron:HG003_chrY_T0000520:4;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7752602	7752714	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=exon:HG003_chrY_T0000520:5;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7752715	7753583	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=intron:HG003_chrY_T0000520:5;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7753584	7753690	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=exon:HG003_chrY_T0000520:6;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7753691	7753769	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=intron:HG003_chrY_T0000520:6;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7753770	7753863	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=exon:HG003_chrY_T0000520:7;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7753864	7754277	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=intron:HG003_chrY_T0000520:7;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7754278	7754579	.	+	.	source_transcript=ENST00000425544.1;source_transcript_name=RBMY2JP-201;source_gene=ENSG00000227204.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227204.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000425544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2JP;transcript_id=HG003_chrY_T0000520;gene_id=HG003_chrY_G0000139;Parent=HG003_chrY_T0000520;transcript_name=HG003_chrY_T0000520;gene_name=RBMY2JP;ID=exon:HG003_chrY_T0000520:8;Name=RBMY2JP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7738815	7754090	.	+	.	source_gene_common_name=ENSG00000299821;source_gene=ENSG00000299821.1;gene_id=HG003_chrY_G0000140;gene_biotype=lncRNA;gene_name=ENSG00000299821;gene_sources=liftoff;ID=HG003_chrY_G0000140;Name=ENSG00000299821
HG003_chrY	CAT	transcript	7738815	7754090	1000	+	.	source_transcript=ENST00000766670.1;source_transcript_name=ENST00000766670;source_gene=ENSG00000299821.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299821.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766670.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299821;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_G0000140;transcript_name=HG003_chrY_T0000521;gene_name=ENSG00000299821;ID=HG003_chrY_T0000521;Name=ENSG00000299821
HG003_chrY	CAT	exon	7738815	7739464	.	+	.	source_transcript=ENST00000766670.1;source_transcript_name=ENST00000766670;source_gene=ENSG00000299821.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299821.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766670.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299821;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000521;transcript_name=HG003_chrY_T0000521;gene_name=ENSG00000299821;ID=exon:HG003_chrY_T0000521:0;Name=ENSG00000299821;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7739465	7751175	.	+	.	source_transcript=ENST00000766670.1;source_transcript_name=ENST00000766670;source_gene=ENSG00000299821.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299821.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766670.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299821;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000521;transcript_name=HG003_chrY_T0000521;gene_name=ENSG00000299821;ID=intron:HG003_chrY_T0000521:0;Name=ENSG00000299821;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7751176	7751336	.	+	.	source_transcript=ENST00000766670.1;source_transcript_name=ENST00000766670;source_gene=ENSG00000299821.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299821.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766670.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299821;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000521;transcript_name=HG003_chrY_T0000521;gene_name=ENSG00000299821;ID=exon:HG003_chrY_T0000521:1;Name=ENSG00000299821;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7751337	7753774	.	+	.	source_transcript=ENST00000766670.1;source_transcript_name=ENST00000766670;source_gene=ENSG00000299821.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299821.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766670.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299821;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000521;transcript_name=HG003_chrY_T0000521;gene_name=ENSG00000299821;ID=intron:HG003_chrY_T0000521:1;Name=ENSG00000299821;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7753775	7754090	.	+	.	source_transcript=ENST00000766670.1;source_transcript_name=ENST00000766670;source_gene=ENSG00000299821.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299821.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766670.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299821;transcript_id=HG003_chrY_T0000521;gene_id=HG003_chrY_G0000140;Parent=HG003_chrY_T0000521;transcript_name=HG003_chrY_T0000521;gene_name=ENSG00000299821;ID=exon:HG003_chrY_T0000521:2;Name=ENSG00000299821;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7752557	7762036	.	-	.	source_gene_common_name=ENSG00000299844;source_gene=ENSG00000299844.1;alternative_source_transcripts=ENST00000766734.1,ENST00000766734.1;gene_id=HG003_chrY_G0000141;gene_biotype=lncRNA;gene_name=ENSG00000299844;gene_sources=liftoff;ID=HG003_chrY_G0000141;Name=ENSG00000299844
HG003_chrY	CAT	transcript	7752557	7762036	1000	-	.	source_transcript=ENST00000766734.1;source_transcript_name=ENST00000766734;source_gene=ENSG00000299844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766734.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299844;alternative_source_transcripts=ENST00000766734.1,ENST00000766734.1;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_G0000141;transcript_name=HG003_chrY_T0000522;gene_name=ENSG00000299844;ID=HG003_chrY_T0000522;Name=ENSG00000299844
HG003_chrY	CAT	exon	7752557	7752704	.	-	.	source_transcript=ENST00000766734.1;source_transcript_name=ENST00000766734;source_gene=ENSG00000299844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766734.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299844;alternative_source_transcripts=ENST00000766734.1,ENST00000766734.1;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_T0000522;transcript_name=HG003_chrY_T0000522;gene_name=ENSG00000299844;ID=exon:HG003_chrY_T0000522:0;Name=ENSG00000299844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7752705	7754604	.	-	.	source_transcript=ENST00000766734.1;source_transcript_name=ENST00000766734;source_gene=ENSG00000299844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766734.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299844;alternative_source_transcripts=ENST00000766734.1,ENST00000766734.1;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_T0000522;transcript_name=HG003_chrY_T0000522;gene_name=ENSG00000299844;ID=intron:HG003_chrY_T0000522:0;Name=ENSG00000299844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7754605	7754712	.	-	.	source_transcript=ENST00000766734.1;source_transcript_name=ENST00000766734;source_gene=ENSG00000299844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766734.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299844;alternative_source_transcripts=ENST00000766734.1,ENST00000766734.1;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_T0000522;transcript_name=HG003_chrY_T0000522;gene_name=ENSG00000299844;ID=exon:HG003_chrY_T0000522:1;Name=ENSG00000299844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7754713	7761971	.	-	.	source_transcript=ENST00000766734.1;source_transcript_name=ENST00000766734;source_gene=ENSG00000299844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766734.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299844;alternative_source_transcripts=ENST00000766734.1,ENST00000766734.1;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_T0000522;transcript_name=HG003_chrY_T0000522;gene_name=ENSG00000299844;ID=intron:HG003_chrY_T0000522:1;Name=ENSG00000299844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7761972	7762036	.	-	.	source_transcript=ENST00000766734.1;source_transcript_name=ENST00000766734;source_gene=ENSG00000299844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766734.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299844;alternative_source_transcripts=ENST00000766734.1,ENST00000766734.1;transcript_id=HG003_chrY_T0000522;gene_id=HG003_chrY_G0000141;Parent=HG003_chrY_T0000522;transcript_name=HG003_chrY_T0000522;gene_name=ENSG00000299844;ID=exon:HG003_chrY_T0000522:2;Name=ENSG00000299844;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7874781	7887516	.	-	.	source_gene_common_name=RBMY2KP;source_gene=ENSG00000225809.1;alternative_source_transcripts=ENST00000418221.1;gene_id=HG003_chrY_G0000142;gene_biotype=unprocessed_pseudogene;gene_name=RBMY2KP;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000142;Name=RBMY2KP
HG003_chrY	CAT	transcript	7874781	7887516	1000	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=transMap;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;alternative_source_transcripts=ENST00000418221.1;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_G0000142;transcript_name=HG003_chrY_T0000523;gene_name=RBMY2KP;ID=HG003_chrY_T0000523;Name=RBMY2KP
HG003_chrY	CAT	exon	7874781	7875097	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=transMap;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;alternative_source_transcripts=ENST00000418221.1;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000523;transcript_name=HG003_chrY_T0000523;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000523:0;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7875098	7875506	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=transMap;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;alternative_source_transcripts=ENST00000418221.1;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000523;transcript_name=HG003_chrY_T0000523;gene_name=RBMY2KP;ID=intron:HG003_chrY_T0000523:0;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7875507	7875776	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=transMap;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;alternative_source_transcripts=ENST00000418221.1;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000523;transcript_name=HG003_chrY_T0000523;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000523:1;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7875777	7876646	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=transMap;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;alternative_source_transcripts=ENST00000418221.1;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000523;transcript_name=HG003_chrY_T0000523;gene_name=RBMY2KP;ID=intron:HG003_chrY_T0000523:1;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7876647	7876761	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=transMap;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;alternative_source_transcripts=ENST00000418221.1;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000523;transcript_name=HG003_chrY_T0000523;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000523:2;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7876762	7881611	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=transMap;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;alternative_source_transcripts=ENST00000418221.1;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000523;transcript_name=HG003_chrY_T0000523;gene_name=RBMY2KP;ID=intron:HG003_chrY_T0000523:2;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7881612	7881761	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=transMap;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;alternative_source_transcripts=ENST00000418221.1;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000523;transcript_name=HG003_chrY_T0000523;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000523:3;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7881762	7886881	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=transMap;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;alternative_source_transcripts=ENST00000418221.1;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000523;transcript_name=HG003_chrY_T0000523;gene_name=RBMY2KP;ID=intron:HG003_chrY_T0000523:3;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7886882	7886984	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=transMap;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;alternative_source_transcripts=ENST00000418221.1;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000523;transcript_name=HG003_chrY_T0000523;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000523:4;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7886985	7887408	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=transMap;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;alternative_source_transcripts=ENST00000418221.1;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000523;transcript_name=HG003_chrY_T0000523;gene_name=RBMY2KP;ID=intron:HG003_chrY_T0000523:4;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7887409	7887516	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=transMap;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;alternative_source_transcripts=ENST00000418221.1;transcript_id=HG003_chrY_T0000523;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000523;transcript_name=HG003_chrY_T0000523;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000523:5;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	7874781	7887516	1000	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_G0000142;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=HG003_chrY_T0000524;Name=RBMY2KP
HG003_chrY	CAT	exon	7874781	7875097	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000524:0;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7875098	7875506	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=intron:HG003_chrY_T0000524:0;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7875507	7875594	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000524:1;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7875595	7875665	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=intron:HG003_chrY_T0000524:1;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7875666	7875776	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000524:2;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7875777	7876646	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=intron:HG003_chrY_T0000524:2;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7876647	7876761	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000524:3;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7876762	7881611	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=intron:HG003_chrY_T0000524:3;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7881612	7881761	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000524:4;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7881762	7886881	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=intron:HG003_chrY_T0000524:4;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7886882	7886984	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000524:5;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7886985	7887408	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=intron:HG003_chrY_T0000524:5;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7887409	7887516	.	-	.	source_transcript=ENST00000418221.1;source_transcript_name=RBMY2KP-201;source_gene=ENSG00000225809.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225809.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418221.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418221.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2KP;transcript_id=HG003_chrY_T0000524;gene_id=HG003_chrY_G0000142;Parent=HG003_chrY_T0000524;transcript_name=HG003_chrY_T0000524;gene_name=RBMY2KP;ID=exon:HG003_chrY_T0000524:6;Name=RBMY2KP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7890526	7892537	.	+	.	source_gene_common_name=TSPY24P;source_gene=ENSG00000215601.3;alternative_source_transcripts=ENST00000431340.1,ENST00000431340.1;gene_id=HG003_chrY_G0000143;gene_biotype=unprocessed_pseudogene;gene_name=TSPY24P;gene_sources=liftoff;ID=HG003_chrY_G0000143;Name=TSPY24P
HG003_chrY	CAT	transcript	7890526	7892537	1000	+	.	source_transcript=ENST00000431340.1;source_transcript_name=TSPY24P-201;source_gene=ENSG00000215601.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000215601.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431340.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431340.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY24P;alternative_source_transcripts=ENST00000431340.1,ENST00000431340.1;transcript_id=HG003_chrY_T0000525;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_G0000143;transcript_name=HG003_chrY_T0000525;gene_name=TSPY24P;ID=HG003_chrY_T0000525;Name=TSPY24P
HG003_chrY	CAT	exon	7890526	7890663	.	+	.	source_transcript=ENST00000431340.1;source_transcript_name=TSPY24P-201;source_gene=ENSG00000215601.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000215601.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431340.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431340.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY24P;alternative_source_transcripts=ENST00000431340.1,ENST00000431340.1;transcript_id=HG003_chrY_T0000525;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000525;transcript_name=HG003_chrY_T0000525;gene_name=TSPY24P;ID=exon:HG003_chrY_T0000525:0;Name=TSPY24P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7890664	7892028	.	+	.	source_transcript=ENST00000431340.1;source_transcript_name=TSPY24P-201;source_gene=ENSG00000215601.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000215601.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431340.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431340.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY24P;alternative_source_transcripts=ENST00000431340.1,ENST00000431340.1;transcript_id=HG003_chrY_T0000525;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000525;transcript_name=HG003_chrY_T0000525;gene_name=TSPY24P;ID=intron:HG003_chrY_T0000525:0;Name=TSPY24P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7892029	7892138	.	+	.	source_transcript=ENST00000431340.1;source_transcript_name=TSPY24P-201;source_gene=ENSG00000215601.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000215601.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431340.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431340.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY24P;alternative_source_transcripts=ENST00000431340.1,ENST00000431340.1;transcript_id=HG003_chrY_T0000525;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000525;transcript_name=HG003_chrY_T0000525;gene_name=TSPY24P;ID=exon:HG003_chrY_T0000525:1;Name=TSPY24P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7892139	7892224	.	+	.	source_transcript=ENST00000431340.1;source_transcript_name=TSPY24P-201;source_gene=ENSG00000215601.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000215601.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431340.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431340.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY24P;alternative_source_transcripts=ENST00000431340.1,ENST00000431340.1;transcript_id=HG003_chrY_T0000525;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000525;transcript_name=HG003_chrY_T0000525;gene_name=TSPY24P;ID=intron:HG003_chrY_T0000525:1;Name=TSPY24P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7892225	7892370	.	+	.	source_transcript=ENST00000431340.1;source_transcript_name=TSPY24P-201;source_gene=ENSG00000215601.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000215601.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431340.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431340.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY24P;alternative_source_transcripts=ENST00000431340.1,ENST00000431340.1;transcript_id=HG003_chrY_T0000525;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000525;transcript_name=HG003_chrY_T0000525;gene_name=TSPY24P;ID=exon:HG003_chrY_T0000525:2;Name=TSPY24P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	7892371	7892488	.	+	.	source_transcript=ENST00000431340.1;source_transcript_name=TSPY24P-201;source_gene=ENSG00000215601.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000215601.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431340.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431340.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY24P;alternative_source_transcripts=ENST00000431340.1,ENST00000431340.1;transcript_id=HG003_chrY_T0000525;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000525;transcript_name=HG003_chrY_T0000525;gene_name=TSPY24P;ID=intron:HG003_chrY_T0000525:2;Name=TSPY24P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	7892489	7892537	.	+	.	source_transcript=ENST00000431340.1;source_transcript_name=TSPY24P-201;source_gene=ENSG00000215601.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000215601.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431340.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431340.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY24P;alternative_source_transcripts=ENST00000431340.1,ENST00000431340.1;transcript_id=HG003_chrY_T0000525;gene_id=HG003_chrY_G0000143;Parent=HG003_chrY_T0000525;transcript_name=HG003_chrY_T0000525;gene_name=TSPY24P;ID=exon:HG003_chrY_T0000525:3;Name=TSPY24P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7961236	7962448	.	+	.	source_gene_common_name=ZNF736P6Y;source_gene=ENSG00000224634.1;alternative_source_transcripts=ENST00000447526.1,ENST00000447526.1;gene_id=HG003_chrY_G0000144;gene_biotype=processed_pseudogene;gene_name=ZNF736P6Y;gene_sources=liftoff;ID=HG003_chrY_G0000144;Name=ZNF736P6Y
HG003_chrY	CAT	transcript	7961236	7962448	1000	+	.	source_transcript=ENST00000447526.1;source_transcript_name=ZNF736P6Y-201;source_gene=ENSG00000224634.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224634.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000447526.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447526.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P6Y;alternative_source_transcripts=ENST00000447526.1,ENST00000447526.1;transcript_id=HG003_chrY_T0000526;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_G0000144;transcript_name=HG003_chrY_T0000526;gene_name=ZNF736P6Y;ID=HG003_chrY_T0000526;Name=ZNF736P6Y
HG003_chrY	CAT	exon	7961236	7962448	.	+	.	source_transcript=ENST00000447526.1;source_transcript_name=ZNF736P6Y-201;source_gene=ENSG00000224634.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224634.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000447526.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447526.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P6Y;alternative_source_transcripts=ENST00000447526.1,ENST00000447526.1;transcript_id=HG003_chrY_T0000526;gene_id=HG003_chrY_G0000144;Parent=HG003_chrY_T0000526;transcript_name=HG003_chrY_T0000526;gene_name=ZNF736P6Y;ID=exon:HG003_chrY_T0000526:0;Name=ZNF736P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7973840	7974263	.	-	.	source_gene_common_name=MTND6P1;source_gene=ENSG00000223955.1;alternative_source_transcripts=ENST00000417434.1,ENST00000417434.1;gene_id=HG003_chrY_G0000145;gene_biotype=processed_pseudogene;gene_name=MTND6P1;gene_sources=liftoff;ID=HG003_chrY_G0000145;Name=MTND6P1
HG003_chrY	CAT	transcript	7973840	7974263	1000	-	.	source_transcript=ENST00000417434.1;source_transcript_name=MTND6P1-201;source_gene=ENSG00000223955.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000223955.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000417434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417434.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MTND6P1;alternative_source_transcripts=ENST00000417434.1,ENST00000417434.1;transcript_id=HG003_chrY_T0000527;gene_id=HG003_chrY_G0000145;Parent=HG003_chrY_G0000145;transcript_name=HG003_chrY_T0000527;gene_name=MTND6P1;ID=HG003_chrY_T0000527;Name=MTND6P1
HG003_chrY	CAT	exon	7973840	7974263	.	-	.	source_transcript=ENST00000417434.1;source_transcript_name=MTND6P1-201;source_gene=ENSG00000223955.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000223955.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000417434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417434.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MTND6P1;alternative_source_transcripts=ENST00000417434.1,ENST00000417434.1;transcript_id=HG003_chrY_T0000527;gene_id=HG003_chrY_G0000145;Parent=HG003_chrY_T0000527;transcript_name=HG003_chrY_T0000527;gene_name=MTND6P1;ID=exon:HG003_chrY_T0000527:0;Name=MTND6P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7974336	7975446	.	+	.	source_gene_common_name=MTCYBP1;source_gene=ENSG00000234179.1;alternative_source_transcripts=ENST00000454315.1,ENST00000454315.1;gene_id=HG003_chrY_G0000146;gene_biotype=processed_pseudogene;gene_name=MTCYBP1;gene_sources=liftoff;ID=HG003_chrY_G0000146;Name=MTCYBP1
HG003_chrY	CAT	transcript	7974336	7975446	1000	+	.	source_transcript=ENST00000454315.1;source_transcript_name=MTCYBP1-201;source_gene=ENSG00000234179.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234179.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000454315.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454315.1;transcript_score=198.481;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MTCYBP1;alternative_source_transcripts=ENST00000454315.1,ENST00000454315.1;transcript_id=HG003_chrY_T0000528;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_G0000146;transcript_name=HG003_chrY_T0000528;gene_name=MTCYBP1;ID=HG003_chrY_T0000528;Name=MTCYBP1
HG003_chrY	CAT	exon	7974336	7975446	.	+	.	source_transcript=ENST00000454315.1;source_transcript_name=MTCYBP1-201;source_gene=ENSG00000234179.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234179.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000454315.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454315.1;transcript_score=198.481;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MTCYBP1;alternative_source_transcripts=ENST00000454315.1,ENST00000454315.1;transcript_id=HG003_chrY_T0000528;gene_id=HG003_chrY_G0000146;Parent=HG003_chrY_T0000528;transcript_name=HG003_chrY_T0000528;gene_name=MTCYBP1;ID=exon:HG003_chrY_T0000528:0;Name=MTCYBP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7981959	7982326	.	+	.	source_gene_common_name=MTND1P1;source_gene=ENSG00000226529.1;alternative_source_transcripts=ENST00000445453.1,ENST00000445453.1;gene_id=HG003_chrY_G0000147;gene_biotype=processed_pseudogene;gene_name=MTND1P1;gene_sources=liftoff;ID=HG003_chrY_G0000147;Name=MTND1P1
HG003_chrY	CAT	transcript	7981959	7982326	1000	+	.	source_transcript=ENST00000445453.1;source_transcript_name=MTND1P1-201;source_gene=ENSG00000226529.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000226529.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000445453.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445453.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MTND1P1;alternative_source_transcripts=ENST00000445453.1,ENST00000445453.1;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000147;Parent=HG003_chrY_G0000147;transcript_name=HG003_chrY_T0000529;gene_name=MTND1P1;ID=HG003_chrY_T0000529;Name=MTND1P1
HG003_chrY	CAT	exon	7981959	7982326	.	+	.	source_transcript=ENST00000445453.1;source_transcript_name=MTND1P1-201;source_gene=ENSG00000226529.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000226529.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000445453.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445453.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MTND1P1;alternative_source_transcripts=ENST00000445453.1,ENST00000445453.1;transcript_id=HG003_chrY_T0000529;gene_id=HG003_chrY_G0000147;Parent=HG003_chrY_T0000529;transcript_name=HG003_chrY_T0000529;gene_name=MTND1P1;ID=exon:HG003_chrY_T0000529:0;Name=MTND1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	7982537	7983006	.	+	.	source_gene_common_name=MTND2P3;source_gene=ENSG00000234850.1;alternative_source_transcripts=ENST00000452458.1,ENST00000452458.1;gene_id=HG003_chrY_G0000148;gene_biotype=processed_pseudogene;gene_name=MTND2P3;gene_sources=liftoff;ID=HG003_chrY_G0000148;Name=MTND2P3
HG003_chrY	CAT	transcript	7982537	7983006	1000	+	.	source_transcript=ENST00000452458.1;source_transcript_name=MTND2P3-201;source_gene=ENSG00000234850.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234850.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000452458.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452458.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MTND2P3;alternative_source_transcripts=ENST00000452458.1,ENST00000452458.1;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_G0000148;transcript_name=HG003_chrY_T0000530;gene_name=MTND2P3;ID=HG003_chrY_T0000530;Name=MTND2P3
HG003_chrY	CAT	exon	7982537	7983006	.	+	.	source_transcript=ENST00000452458.1;source_transcript_name=MTND2P3-201;source_gene=ENSG00000234850.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234850.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000452458.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452458.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MTND2P3;alternative_source_transcripts=ENST00000452458.1,ENST00000452458.1;transcript_id=HG003_chrY_T0000530;gene_id=HG003_chrY_G0000148;Parent=HG003_chrY_T0000530;transcript_name=HG003_chrY_T0000530;gene_name=MTND2P3;ID=exon:HG003_chrY_T0000530:0;Name=MTND2P3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8005337	8017696	.	+	.	source_gene_common_name=ENSG00000303338;source_gene=ENSG00000303338.1;alternative_source_transcripts=ENST00000793768.1,ENST00000793768.1;gene_id=HG003_chrY_G0000149;gene_biotype=lncRNA;gene_name=ENSG00000303338;gene_sources=liftoff;ID=HG003_chrY_G0000149;Name=ENSG00000303338
HG003_chrY	CAT	transcript	8005337	8013137	1000	+	.	source_transcript=ENST00000793768.1;source_transcript_name=ENST00000793768;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793768.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793768.1,ENST00000793768.1;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_G0000149;transcript_name=HG003_chrY_T0000531;gene_name=ENSG00000303338;ID=HG003_chrY_T0000531;Name=ENSG00000303338
HG003_chrY	CAT	exon	8005337	8005428	.	+	.	source_transcript=ENST00000793768.1;source_transcript_name=ENST00000793768;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793768.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793768.1,ENST00000793768.1;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000531;transcript_name=HG003_chrY_T0000531;gene_name=ENSG00000303338;ID=exon:HG003_chrY_T0000531:0;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8005429	8013022	.	+	.	source_transcript=ENST00000793768.1;source_transcript_name=ENST00000793768;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793768.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793768.1,ENST00000793768.1;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000531;transcript_name=HG003_chrY_T0000531;gene_name=ENSG00000303338;ID=intron:HG003_chrY_T0000531:0;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8013023	8013137	.	+	.	source_transcript=ENST00000793768.1;source_transcript_name=ENST00000793768;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793768.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793768.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793768.1,ENST00000793768.1;transcript_id=HG003_chrY_T0000531;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000531;transcript_name=HG003_chrY_T0000531;gene_name=ENSG00000303338;ID=exon:HG003_chrY_T0000531:1;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8005337	8010626	1000	+	.	source_transcript=ENST00000793770.1;source_transcript_name=ENST00000793770;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793770.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793770.1,ENST00000793770.1;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_G0000149;transcript_name=HG003_chrY_T0000532;gene_name=ENSG00000303338;ID=HG003_chrY_T0000532;Name=ENSG00000303338
HG003_chrY	CAT	exon	8005337	8005428	.	+	.	source_transcript=ENST00000793770.1;source_transcript_name=ENST00000793770;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793770.1,ENST00000793770.1;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000532;transcript_name=HG003_chrY_T0000532;gene_name=ENSG00000303338;ID=exon:HG003_chrY_T0000532:0;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8005429	8010369	.	+	.	source_transcript=ENST00000793770.1;source_transcript_name=ENST00000793770;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793770.1,ENST00000793770.1;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000532;transcript_name=HG003_chrY_T0000532;gene_name=ENSG00000303338;ID=intron:HG003_chrY_T0000532:0;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8010370	8010626	.	+	.	source_transcript=ENST00000793770.1;source_transcript_name=ENST00000793770;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793770.1,ENST00000793770.1;transcript_id=HG003_chrY_T0000532;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000532;transcript_name=HG003_chrY_T0000532;gene_name=ENSG00000303338;ID=exon:HG003_chrY_T0000532:1;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8005343	8013132	1000	+	.	source_transcript=ENST00000793769.1;source_transcript_name=ENST00000793769;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793769.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793769.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793769.1,ENST00000793769.1;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_G0000149;transcript_name=HG003_chrY_T0000533;gene_name=ENSG00000303338;ID=HG003_chrY_T0000533;Name=ENSG00000303338
HG003_chrY	CAT	exon	8005343	8005428	.	+	.	source_transcript=ENST00000793769.1;source_transcript_name=ENST00000793769;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793769.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793769.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793769.1,ENST00000793769.1;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000533;transcript_name=HG003_chrY_T0000533;gene_name=ENSG00000303338;ID=exon:HG003_chrY_T0000533:0;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8005429	8010369	.	+	.	source_transcript=ENST00000793769.1;source_transcript_name=ENST00000793769;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793769.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793769.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793769.1,ENST00000793769.1;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000533;transcript_name=HG003_chrY_T0000533;gene_name=ENSG00000303338;ID=intron:HG003_chrY_T0000533:0;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8010370	8010455	.	+	.	source_transcript=ENST00000793769.1;source_transcript_name=ENST00000793769;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793769.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793769.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793769.1,ENST00000793769.1;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000533;transcript_name=HG003_chrY_T0000533;gene_name=ENSG00000303338;ID=exon:HG003_chrY_T0000533:1;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8010456	8013022	.	+	.	source_transcript=ENST00000793769.1;source_transcript_name=ENST00000793769;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793769.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793769.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793769.1,ENST00000793769.1;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000533;transcript_name=HG003_chrY_T0000533;gene_name=ENSG00000303338;ID=intron:HG003_chrY_T0000533:1;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8013023	8013132	.	+	.	source_transcript=ENST00000793769.1;source_transcript_name=ENST00000793769;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793769.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793769.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793769.1,ENST00000793769.1;transcript_id=HG003_chrY_T0000533;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000533;transcript_name=HG003_chrY_T0000533;gene_name=ENSG00000303338;ID=exon:HG003_chrY_T0000533:2;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8005369	8017696	1000	+	.	source_transcript=ENST00000793767.1;source_transcript_name=ENST00000793767;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793767.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793767.1,ENST00000793767.1;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_G0000149;transcript_name=HG003_chrY_T0000534;gene_name=ENSG00000303338;ID=HG003_chrY_T0000534;Name=ENSG00000303338
HG003_chrY	CAT	exon	8005369	8005428	.	+	.	source_transcript=ENST00000793767.1;source_transcript_name=ENST00000793767;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793767.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793767.1,ENST00000793767.1;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000534;transcript_name=HG003_chrY_T0000534;gene_name=ENSG00000303338;ID=exon:HG003_chrY_T0000534:0;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8005429	8013022	.	+	.	source_transcript=ENST00000793767.1;source_transcript_name=ENST00000793767;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793767.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793767.1,ENST00000793767.1;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000534;transcript_name=HG003_chrY_T0000534;gene_name=ENSG00000303338;ID=intron:HG003_chrY_T0000534:0;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8013023	8013276	.	+	.	source_transcript=ENST00000793767.1;source_transcript_name=ENST00000793767;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793767.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793767.1,ENST00000793767.1;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000534;transcript_name=HG003_chrY_T0000534;gene_name=ENSG00000303338;ID=exon:HG003_chrY_T0000534:1;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8013277	8013977	.	+	.	source_transcript=ENST00000793767.1;source_transcript_name=ENST00000793767;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793767.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793767.1,ENST00000793767.1;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000534;transcript_name=HG003_chrY_T0000534;gene_name=ENSG00000303338;ID=intron:HG003_chrY_T0000534:1;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8013978	8014130	.	+	.	source_transcript=ENST00000793767.1;source_transcript_name=ENST00000793767;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793767.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793767.1,ENST00000793767.1;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000534;transcript_name=HG003_chrY_T0000534;gene_name=ENSG00000303338;ID=exon:HG003_chrY_T0000534:2;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8014131	8017422	.	+	.	source_transcript=ENST00000793767.1;source_transcript_name=ENST00000793767;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793767.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793767.1,ENST00000793767.1;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000534;transcript_name=HG003_chrY_T0000534;gene_name=ENSG00000303338;ID=intron:HG003_chrY_T0000534:2;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8017423	8017696	.	+	.	source_transcript=ENST00000793767.1;source_transcript_name=ENST00000793767;source_gene=ENSG00000303338.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303338.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793767.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303338;alternative_source_transcripts=ENST00000793767.1,ENST00000793767.1;transcript_id=HG003_chrY_T0000534;gene_id=HG003_chrY_G0000149;Parent=HG003_chrY_T0000534;transcript_name=HG003_chrY_T0000534;gene_name=ENSG00000303338;ID=exon:HG003_chrY_T0000534:3;Name=ENSG00000303338;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8023333	8024350	.	-	.	source_gene_common_name=TRIM60P3Y;source_gene=ENSG00000227830.1;alternative_source_transcripts=ENST00000432201.1,ENST00000432201.1;gene_id=HG003_chrY_G0000150;gene_biotype=processed_pseudogene;gene_name=TRIM60P3Y;gene_sources=liftoff;ID=HG003_chrY_G0000150;Name=TRIM60P3Y
HG003_chrY	CAT	transcript	8023333	8024350	1000	-	.	source_transcript=ENST00000432201.1;source_transcript_name=TRIM60P3Y-201;source_gene=ENSG00000227830.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227830.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000432201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432201.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P3Y;alternative_source_transcripts=ENST00000432201.1,ENST00000432201.1;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_G0000150;transcript_name=HG003_chrY_T0000535;gene_name=TRIM60P3Y;ID=HG003_chrY_T0000535;Name=TRIM60P3Y
HG003_chrY	CAT	exon	8023333	8023750	.	-	.	source_transcript=ENST00000432201.1;source_transcript_name=TRIM60P3Y-201;source_gene=ENSG00000227830.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227830.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000432201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432201.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P3Y;alternative_source_transcripts=ENST00000432201.1,ENST00000432201.1;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000535;transcript_name=HG003_chrY_T0000535;gene_name=TRIM60P3Y;ID=exon:HG003_chrY_T0000535:0;Name=TRIM60P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8023751	8024095	.	-	.	source_transcript=ENST00000432201.1;source_transcript_name=TRIM60P3Y-201;source_gene=ENSG00000227830.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227830.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000432201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432201.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P3Y;alternative_source_transcripts=ENST00000432201.1,ENST00000432201.1;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000535;transcript_name=HG003_chrY_T0000535;gene_name=TRIM60P3Y;ID=intron:HG003_chrY_T0000535:0;Name=TRIM60P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8024096	8024350	.	-	.	source_transcript=ENST00000432201.1;source_transcript_name=TRIM60P3Y-201;source_gene=ENSG00000227830.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227830.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000432201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432201.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P3Y;alternative_source_transcripts=ENST00000432201.1,ENST00000432201.1;transcript_id=HG003_chrY_T0000535;gene_id=HG003_chrY_G0000150;Parent=HG003_chrY_T0000535;transcript_name=HG003_chrY_T0000535;gene_name=TRIM60P3Y;ID=exon:HG003_chrY_T0000535:1;Name=TRIM60P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8029087	8030196	.	-	.	source_gene_common_name=ZNF736P10Y;source_gene=ENSG00000216824.2;alternative_source_transcripts=ENST00000403990.2,ENST00000403990.2;gene_id=HG003_chrY_G0000151;gene_biotype=processed_pseudogene;gene_name=ZNF736P10Y;gene_sources=liftoff;ID=HG003_chrY_G0000151;Name=ZNF736P10Y
HG003_chrY	CAT	transcript	8029087	8030196	1000	-	.	source_transcript=ENST00000403990.2;source_transcript_name=ZNF736P10Y-201;source_gene=ENSG00000216824.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000216824.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000403990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000403990.2;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P10Y;alternative_source_transcripts=ENST00000403990.2,ENST00000403990.2;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000151;Parent=HG003_chrY_G0000151;transcript_name=HG003_chrY_T0000536;gene_name=ZNF736P10Y;ID=HG003_chrY_T0000536;Name=ZNF736P10Y
HG003_chrY	CAT	exon	8029087	8030196	.	-	.	source_transcript=ENST00000403990.2;source_transcript_name=ZNF736P10Y-201;source_gene=ENSG00000216824.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000216824.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000403990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000403990.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P10Y;alternative_source_transcripts=ENST00000403990.2,ENST00000403990.2;transcript_id=HG003_chrY_T0000536;gene_id=HG003_chrY_G0000151;Parent=HG003_chrY_T0000536;transcript_name=HG003_chrY_T0000536;gene_name=ZNF736P10Y;ID=exon:HG003_chrY_T0000536:0;Name=ZNF736P10Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8127628	8128012	.	-	.	source_gene_common_name=ENSG00000275866;source_gene=ENSG00000275866.1;alternative_source_transcripts=ENST00000621514.1,ENST00000621514.1;gene_id=HG003_chrY_G0000152;gene_biotype=processed_pseudogene;gene_name=ENSG00000275866;gene_sources=liftoff;ID=HG003_chrY_G0000152;Name=ENSG00000275866
HG003_chrY	CAT	transcript	8127628	8128012	1000	-	.	source_transcript=ENST00000621514.1;source_transcript_name=ENST00000621514;source_gene=ENSG00000275866.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000275866.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000621514.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621514.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275866;alternative_source_transcripts=ENST00000621514.1,ENST00000621514.1;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_G0000152;transcript_name=HG003_chrY_T0000537;gene_name=ENSG00000275866;ID=HG003_chrY_T0000537;Name=ENSG00000275866
HG003_chrY	CAT	exon	8127628	8128012	.	-	.	source_transcript=ENST00000621514.1;source_transcript_name=ENST00000621514;source_gene=ENSG00000275866.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000275866.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000621514.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000621514.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275866;alternative_source_transcripts=ENST00000621514.1,ENST00000621514.1;transcript_id=HG003_chrY_T0000537;gene_id=HG003_chrY_G0000152;Parent=HG003_chrY_T0000537;transcript_name=HG003_chrY_T0000537;gene_name=ENSG00000275866;ID=exon:HG003_chrY_T0000537:0;Name=ENSG00000275866;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8160762	8324215	.	+	.	source_gene_common_name=LINC00279;source_gene=ENSG00000286217.3;gene_id=HG003_chrY_G0000153;gene_biotype=lncRNA;gene_name=LINC00279;gene_sources=liftoff;ID=HG003_chrY_G0000153;Name=LINC00279
HG003_chrY	CAT	transcript	8160762	8171198	1000	+	.	source_transcript=ENST00000767031.1;source_transcript_name=LINC00279-209;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000767031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000767031.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000538;gene_name=LINC00279;ID=HG003_chrY_T0000538;Name=LINC00279
HG003_chrY	CAT	exon	8160762	8160873	.	+	.	source_transcript=ENST00000767031.1;source_transcript_name=LINC00279-209;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000767031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000767031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000538;transcript_name=HG003_chrY_T0000538;gene_name=LINC00279;ID=exon:HG003_chrY_T0000538:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8160874	8169708	.	+	.	source_transcript=ENST00000767031.1;source_transcript_name=LINC00279-209;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000767031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000767031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000538;transcript_name=HG003_chrY_T0000538;gene_name=LINC00279;ID=intron:HG003_chrY_T0000538:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8169709	8169816	.	+	.	source_transcript=ENST00000767031.1;source_transcript_name=LINC00279-209;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000767031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000767031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000538;transcript_name=HG003_chrY_T0000538;gene_name=LINC00279;ID=exon:HG003_chrY_T0000538:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8169817	8170667	.	+	.	source_transcript=ENST00000767031.1;source_transcript_name=LINC00279-209;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000767031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000767031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000538;transcript_name=HG003_chrY_T0000538;gene_name=LINC00279;ID=intron:HG003_chrY_T0000538:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8170668	8171198	.	+	.	source_transcript=ENST00000767031.1;source_transcript_name=LINC00279-209;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000767031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000767031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000538;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000538;transcript_name=HG003_chrY_T0000538;gene_name=LINC00279;ID=exon:HG003_chrY_T0000538:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8160786	8212812	1000	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=HG003_chrY_T0000539;Name=LINC00279
HG003_chrY	CAT	exon	8160786	8160873	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8160874	8169708	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8169709	8169816	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8169817	8170667	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8170668	8170787	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8170788	8171356	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8171357	8171434	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8171435	8172328	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8172329	8172563	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8172564	8191927	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8191928	8192091	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:5;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8192092	8193858	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:5;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8193859	8193974	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:6;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8193975	8195482	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:6;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8195483	8195533	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:7;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8195534	8205491	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:7;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8205492	8205731	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:8;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8205732	8207078	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:8;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8207079	8207159	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:9;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8207160	8207384	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:9;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8207385	8207478	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:10;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8207479	8207829	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:10;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8207830	8207989	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:11;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8207990	8210912	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:11;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8210913	8210993	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:12;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8210994	8211205	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:12;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8211206	8211313	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:13;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8211314	8211484	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=intron:HG003_chrY_T0000539:13;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8211485	8212812	.	+	.	source_transcript=ENST00000651511.1;source_transcript_name=LINC00279-204;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651511.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651511.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000539;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000539;transcript_name=HG003_chrY_T0000539;gene_name=LINC00279;ID=exon:HG003_chrY_T0000539:14;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8193722	8260852	1000	+	.	source_transcript=ENST00000842834.1;source_transcript_name=LINC00279-211;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842834.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000540;gene_name=LINC00279;ID=HG003_chrY_T0000540;Name=LINC00279
HG003_chrY	CAT	exon	8193722	8193974	.	+	.	source_transcript=ENST00000842834.1;source_transcript_name=LINC00279-211;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000540;transcript_name=HG003_chrY_T0000540;gene_name=LINC00279;ID=exon:HG003_chrY_T0000540:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8193975	8242831	.	+	.	source_transcript=ENST00000842834.1;source_transcript_name=LINC00279-211;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000540;transcript_name=HG003_chrY_T0000540;gene_name=LINC00279;ID=intron:HG003_chrY_T0000540:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8242832	8242918	.	+	.	source_transcript=ENST00000842834.1;source_transcript_name=LINC00279-211;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000540;transcript_name=HG003_chrY_T0000540;gene_name=LINC00279;ID=exon:HG003_chrY_T0000540:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8242919	8243378	.	+	.	source_transcript=ENST00000842834.1;source_transcript_name=LINC00279-211;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000540;transcript_name=HG003_chrY_T0000540;gene_name=LINC00279;ID=intron:HG003_chrY_T0000540:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8243379	8243601	.	+	.	source_transcript=ENST00000842834.1;source_transcript_name=LINC00279-211;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000540;transcript_name=HG003_chrY_T0000540;gene_name=LINC00279;ID=exon:HG003_chrY_T0000540:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8243602	8259788	.	+	.	source_transcript=ENST00000842834.1;source_transcript_name=LINC00279-211;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000540;transcript_name=HG003_chrY_T0000540;gene_name=LINC00279;ID=intron:HG003_chrY_T0000540:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8259789	8259938	.	+	.	source_transcript=ENST00000842834.1;source_transcript_name=LINC00279-211;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000540;transcript_name=HG003_chrY_T0000540;gene_name=LINC00279;ID=exon:HG003_chrY_T0000540:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8259939	8260514	.	+	.	source_transcript=ENST00000842834.1;source_transcript_name=LINC00279-211;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000540;transcript_name=HG003_chrY_T0000540;gene_name=LINC00279;ID=intron:HG003_chrY_T0000540:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8260515	8260852	.	+	.	source_transcript=ENST00000842834.1;source_transcript_name=LINC00279-211;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842834.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842834.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000540;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000540;transcript_name=HG003_chrY_T0000540;gene_name=LINC00279;ID=exon:HG003_chrY_T0000540:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8193722	8297821	1000	+	.	source_transcript=ENST00000842833.1;source_transcript_name=LINC00279-210;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842833.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000541;gene_name=LINC00279;ID=HG003_chrY_T0000541;Name=LINC00279
HG003_chrY	CAT	exon	8193722	8193974	.	+	.	source_transcript=ENST00000842833.1;source_transcript_name=LINC00279-210;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842833.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000541;transcript_name=HG003_chrY_T0000541;gene_name=LINC00279;ID=exon:HG003_chrY_T0000541:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8193975	8288712	.	+	.	source_transcript=ENST00000842833.1;source_transcript_name=LINC00279-210;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842833.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000541;transcript_name=HG003_chrY_T0000541;gene_name=LINC00279;ID=intron:HG003_chrY_T0000541:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8288713	8288787	.	+	.	source_transcript=ENST00000842833.1;source_transcript_name=LINC00279-210;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842833.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000541;transcript_name=HG003_chrY_T0000541;gene_name=LINC00279;ID=exon:HG003_chrY_T0000541:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8288788	8291111	.	+	.	source_transcript=ENST00000842833.1;source_transcript_name=LINC00279-210;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842833.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000541;transcript_name=HG003_chrY_T0000541;gene_name=LINC00279;ID=intron:HG003_chrY_T0000541:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8291112	8291271	.	+	.	source_transcript=ENST00000842833.1;source_transcript_name=LINC00279-210;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842833.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000541;transcript_name=HG003_chrY_T0000541;gene_name=LINC00279;ID=exon:HG003_chrY_T0000541:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8291272	8292702	.	+	.	source_transcript=ENST00000842833.1;source_transcript_name=LINC00279-210;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842833.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000541;transcript_name=HG003_chrY_T0000541;gene_name=LINC00279;ID=intron:HG003_chrY_T0000541:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8292703	8292864	.	+	.	source_transcript=ENST00000842833.1;source_transcript_name=LINC00279-210;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842833.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000541;transcript_name=HG003_chrY_T0000541;gene_name=LINC00279;ID=exon:HG003_chrY_T0000541:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8292865	8297573	.	+	.	source_transcript=ENST00000842833.1;source_transcript_name=LINC00279-210;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842833.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000541;transcript_name=HG003_chrY_T0000541;gene_name=LINC00279;ID=intron:HG003_chrY_T0000541:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8297574	8297821	.	+	.	source_transcript=ENST00000842833.1;source_transcript_name=LINC00279-210;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842833.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842833.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000541;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000541;transcript_name=HG003_chrY_T0000541;gene_name=LINC00279;ID=exon:HG003_chrY_T0000541:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8193733	8324215	1000	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=HG003_chrY_T0000542;Name=LINC00279
HG003_chrY	CAT	exon	8193733	8193974	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=exon:HG003_chrY_T0000542:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8193975	8288712	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=intron:HG003_chrY_T0000542:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8288713	8288787	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=exon:HG003_chrY_T0000542:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8288788	8291111	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=intron:HG003_chrY_T0000542:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8291112	8291271	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=exon:HG003_chrY_T0000542:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8291272	8292702	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=intron:HG003_chrY_T0000542:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8292703	8292864	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=exon:HG003_chrY_T0000542:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8292865	8297573	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=intron:HG003_chrY_T0000542:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8297574	8297777	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=exon:HG003_chrY_T0000542:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8297778	8300559	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=intron:HG003_chrY_T0000542:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8300560	8300721	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=exon:HG003_chrY_T0000542:5;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8300722	8303392	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=intron:HG003_chrY_T0000542:5;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8303393	8303588	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=exon:HG003_chrY_T0000542:6;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8303589	8308135	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=intron:HG003_chrY_T0000542:6;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8308136	8308297	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=exon:HG003_chrY_T0000542:7;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8308298	8310450	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=intron:HG003_chrY_T0000542:7;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8310451	8310612	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=exon:HG003_chrY_T0000542:8;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8310613	8315481	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=intron:HG003_chrY_T0000542:8;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8315482	8315643	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=exon:HG003_chrY_T0000542:9;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8315644	8320488	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=intron:HG003_chrY_T0000542:9;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8320489	8320650	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=exon:HG003_chrY_T0000542:10;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8320651	8323643	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=intron:HG003_chrY_T0000542:10;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8323644	8324215	.	+	.	source_transcript=ENST00000650816.1;source_transcript_name=LINC00279-203;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000542;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000542;transcript_name=HG003_chrY_T0000542;gene_name=LINC00279;ID=exon:HG003_chrY_T0000542:11;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8193750	8260850	1000	+	.	source_transcript=ENST00000842835.1;source_transcript_name=LINC00279-212;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842835.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000543;gene_name=LINC00279;ID=HG003_chrY_T0000543;Name=LINC00279
HG003_chrY	CAT	exon	8193750	8193974	.	+	.	source_transcript=ENST00000842835.1;source_transcript_name=LINC00279-212;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000543;transcript_name=HG003_chrY_T0000543;gene_name=LINC00279;ID=exon:HG003_chrY_T0000543:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8193975	8259788	.	+	.	source_transcript=ENST00000842835.1;source_transcript_name=LINC00279-212;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000543;transcript_name=HG003_chrY_T0000543;gene_name=LINC00279;ID=intron:HG003_chrY_T0000543:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8259789	8259938	.	+	.	source_transcript=ENST00000842835.1;source_transcript_name=LINC00279-212;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000543;transcript_name=HG003_chrY_T0000543;gene_name=LINC00279;ID=exon:HG003_chrY_T0000543:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8259939	8260514	.	+	.	source_transcript=ENST00000842835.1;source_transcript_name=LINC00279-212;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000543;transcript_name=HG003_chrY_T0000543;gene_name=LINC00279;ID=intron:HG003_chrY_T0000543:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8260515	8260850	.	+	.	source_transcript=ENST00000842835.1;source_transcript_name=LINC00279-212;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000543;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000543;transcript_name=HG003_chrY_T0000543;gene_name=LINC00279;ID=exon:HG003_chrY_T0000543:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8193750	8206334	1000	+	.	source_transcript=ENST00000842839.1;source_transcript_name=LINC00279-216;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842839.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000544;gene_name=LINC00279;ID=HG003_chrY_T0000544;Name=LINC00279
HG003_chrY	CAT	exon	8193750	8193980	.	+	.	source_transcript=ENST00000842839.1;source_transcript_name=LINC00279-216;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000544;transcript_name=HG003_chrY_T0000544;gene_name=LINC00279;ID=exon:HG003_chrY_T0000544:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8193981	8205469	.	+	.	source_transcript=ENST00000842839.1;source_transcript_name=LINC00279-216;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000544;transcript_name=HG003_chrY_T0000544;gene_name=LINC00279;ID=intron:HG003_chrY_T0000544:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8205470	8206334	.	+	.	source_transcript=ENST00000842839.1;source_transcript_name=LINC00279-216;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000544;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000544;transcript_name=HG003_chrY_T0000544;gene_name=LINC00279;ID=exon:HG003_chrY_T0000544:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8193761	8260849	1000	+	.	source_transcript=ENST00000842836.1;source_transcript_name=LINC00279-213;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842836.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000545;gene_name=LINC00279;ID=HG003_chrY_T0000545;Name=LINC00279
HG003_chrY	CAT	exon	8193761	8193980	.	+	.	source_transcript=ENST00000842836.1;source_transcript_name=LINC00279-213;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000545;transcript_name=HG003_chrY_T0000545;gene_name=LINC00279;ID=exon:HG003_chrY_T0000545:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8193981	8259788	.	+	.	source_transcript=ENST00000842836.1;source_transcript_name=LINC00279-213;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000545;transcript_name=HG003_chrY_T0000545;gene_name=LINC00279;ID=intron:HG003_chrY_T0000545:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8259789	8259938	.	+	.	source_transcript=ENST00000842836.1;source_transcript_name=LINC00279-213;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000545;transcript_name=HG003_chrY_T0000545;gene_name=LINC00279;ID=exon:HG003_chrY_T0000545:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8259939	8260514	.	+	.	source_transcript=ENST00000842836.1;source_transcript_name=LINC00279-213;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000545;transcript_name=HG003_chrY_T0000545;gene_name=LINC00279;ID=intron:HG003_chrY_T0000545:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8260515	8260849	.	+	.	source_transcript=ENST00000842836.1;source_transcript_name=LINC00279-213;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842836.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842836.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000545;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000545;transcript_name=HG003_chrY_T0000545;gene_name=LINC00279;ID=exon:HG003_chrY_T0000545:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8193780	8305215	1000	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=HG003_chrY_T0000546;Name=LINC00279
HG003_chrY	CAT	exon	8193780	8193974	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=exon:HG003_chrY_T0000546:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8193975	8288712	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=intron:HG003_chrY_T0000546:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8288713	8288787	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=exon:HG003_chrY_T0000546:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8288788	8291111	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=intron:HG003_chrY_T0000546:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8291112	8291271	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=exon:HG003_chrY_T0000546:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8291272	8292702	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=intron:HG003_chrY_T0000546:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8292703	8292864	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=exon:HG003_chrY_T0000546:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8292865	8297573	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=intron:HG003_chrY_T0000546:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8297574	8297777	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=exon:HG003_chrY_T0000546:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8297778	8300559	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=intron:HG003_chrY_T0000546:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8300560	8300721	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=exon:HG003_chrY_T0000546:5;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8300722	8303392	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=intron:HG003_chrY_T0000546:5;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8303393	8304541	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=exon:HG003_chrY_T0000546:6;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8304542	8304766	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=intron:HG003_chrY_T0000546:6;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8304767	8305215	.	+	.	source_transcript=ENST00000651700.2;source_transcript_name=LINC00279-205;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000546;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000546;transcript_name=HG003_chrY_T0000546;gene_name=LINC00279;ID=exon:HG003_chrY_T0000546:7;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8193780	8276378	1000	+	.	source_transcript=ENST00000657784.1;source_transcript_name=LINC00279-208;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657784.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000547;gene_name=LINC00279;ID=HG003_chrY_T0000547;Name=LINC00279
HG003_chrY	CAT	exon	8193780	8193974	.	+	.	source_transcript=ENST00000657784.1;source_transcript_name=LINC00279-208;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000547;transcript_name=HG003_chrY_T0000547;gene_name=LINC00279;ID=exon:HG003_chrY_T0000547:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8193975	8268312	.	+	.	source_transcript=ENST00000657784.1;source_transcript_name=LINC00279-208;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000547;transcript_name=HG003_chrY_T0000547;gene_name=LINC00279;ID=intron:HG003_chrY_T0000547:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8268313	8268385	.	+	.	source_transcript=ENST00000657784.1;source_transcript_name=LINC00279-208;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000547;transcript_name=HG003_chrY_T0000547;gene_name=LINC00279;ID=exon:HG003_chrY_T0000547:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8268386	8270854	.	+	.	source_transcript=ENST00000657784.1;source_transcript_name=LINC00279-208;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000547;transcript_name=HG003_chrY_T0000547;gene_name=LINC00279;ID=intron:HG003_chrY_T0000547:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8270855	8276378	.	+	.	source_transcript=ENST00000657784.1;source_transcript_name=LINC00279-208;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000547;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000547;transcript_name=HG003_chrY_T0000547;gene_name=LINC00279;ID=exon:HG003_chrY_T0000547:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8193900	8208081	1000	+	.	source_transcript=ENST00000650791.1;source_transcript_name=LINC00279-202;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650791.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000548;gene_name=LINC00279;ID=HG003_chrY_T0000548;Name=LINC00279
HG003_chrY	CAT	exon	8193900	8193980	.	+	.	source_transcript=ENST00000650791.1;source_transcript_name=LINC00279-202;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000548;transcript_name=HG003_chrY_T0000548;gene_name=LINC00279;ID=exon:HG003_chrY_T0000548:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8193981	8195482	.	+	.	source_transcript=ENST00000650791.1;source_transcript_name=LINC00279-202;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000548;transcript_name=HG003_chrY_T0000548;gene_name=LINC00279;ID=intron:HG003_chrY_T0000548:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8195483	8195533	.	+	.	source_transcript=ENST00000650791.1;source_transcript_name=LINC00279-202;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000548;transcript_name=HG003_chrY_T0000548;gene_name=LINC00279;ID=exon:HG003_chrY_T0000548:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8195534	8205491	.	+	.	source_transcript=ENST00000650791.1;source_transcript_name=LINC00279-202;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000548;transcript_name=HG003_chrY_T0000548;gene_name=LINC00279;ID=intron:HG003_chrY_T0000548:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8205492	8205731	.	+	.	source_transcript=ENST00000650791.1;source_transcript_name=LINC00279-202;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000548;transcript_name=HG003_chrY_T0000548;gene_name=LINC00279;ID=exon:HG003_chrY_T0000548:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8205732	8207829	.	+	.	source_transcript=ENST00000650791.1;source_transcript_name=LINC00279-202;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000548;transcript_name=HG003_chrY_T0000548;gene_name=LINC00279;ID=intron:HG003_chrY_T0000548:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8207830	8208081	.	+	.	source_transcript=ENST00000650791.1;source_transcript_name=LINC00279-202;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000548;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000548;transcript_name=HG003_chrY_T0000548;gene_name=LINC00279;ID=exon:HG003_chrY_T0000548:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8210336	8260824	1000	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=HG003_chrY_T0000549;Name=LINC00279
HG003_chrY	CAT	exon	8210336	8211313	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=exon:HG003_chrY_T0000549:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8211314	8217235	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=intron:HG003_chrY_T0000549:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8217236	8217308	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=exon:HG003_chrY_T0000549:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8217309	8217515	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=intron:HG003_chrY_T0000549:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8217516	8217602	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=exon:HG003_chrY_T0000549:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8217603	8242831	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=intron:HG003_chrY_T0000549:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8242832	8242918	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=exon:HG003_chrY_T0000549:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8242919	8243378	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=intron:HG003_chrY_T0000549:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8243379	8243601	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=exon:HG003_chrY_T0000549:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8243602	8259788	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=intron:HG003_chrY_T0000549:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8259789	8259938	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=exon:HG003_chrY_T0000549:5;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8259939	8260514	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=intron:HG003_chrY_T0000549:5;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8260515	8260824	.	+	.	source_transcript=ENST00000651793.1;source_transcript_name=LINC00279-206;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000549;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000549;transcript_name=HG003_chrY_T0000549;gene_name=LINC00279;ID=exon:HG003_chrY_T0000549:6;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8243312	8297816	1000	+	.	source_transcript=ENST00000842837.1;source_transcript_name=LINC00279-214;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842837.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000550;gene_name=LINC00279;ID=HG003_chrY_T0000550;Name=LINC00279
HG003_chrY	CAT	exon	8243312	8243601	.	+	.	source_transcript=ENST00000842837.1;source_transcript_name=LINC00279-214;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842837.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000550;transcript_name=HG003_chrY_T0000550;gene_name=LINC00279;ID=exon:HG003_chrY_T0000550:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8243602	8288712	.	+	.	source_transcript=ENST00000842837.1;source_transcript_name=LINC00279-214;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842837.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000550;transcript_name=HG003_chrY_T0000550;gene_name=LINC00279;ID=intron:HG003_chrY_T0000550:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8288713	8288787	.	+	.	source_transcript=ENST00000842837.1;source_transcript_name=LINC00279-214;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842837.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000550;transcript_name=HG003_chrY_T0000550;gene_name=LINC00279;ID=exon:HG003_chrY_T0000550:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8288788	8291111	.	+	.	source_transcript=ENST00000842837.1;source_transcript_name=LINC00279-214;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842837.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000550;transcript_name=HG003_chrY_T0000550;gene_name=LINC00279;ID=intron:HG003_chrY_T0000550:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8291112	8291271	.	+	.	source_transcript=ENST00000842837.1;source_transcript_name=LINC00279-214;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842837.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000550;transcript_name=HG003_chrY_T0000550;gene_name=LINC00279;ID=exon:HG003_chrY_T0000550:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8291272	8292702	.	+	.	source_transcript=ENST00000842837.1;source_transcript_name=LINC00279-214;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842837.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000550;transcript_name=HG003_chrY_T0000550;gene_name=LINC00279;ID=intron:HG003_chrY_T0000550:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8292703	8292864	.	+	.	source_transcript=ENST00000842837.1;source_transcript_name=LINC00279-214;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842837.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000550;transcript_name=HG003_chrY_T0000550;gene_name=LINC00279;ID=exon:HG003_chrY_T0000550:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8292865	8297573	.	+	.	source_transcript=ENST00000842837.1;source_transcript_name=LINC00279-214;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842837.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000550;transcript_name=HG003_chrY_T0000550;gene_name=LINC00279;ID=intron:HG003_chrY_T0000550:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8297574	8297816	.	+	.	source_transcript=ENST00000842837.1;source_transcript_name=LINC00279-214;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842837.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000550;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000550;transcript_name=HG003_chrY_T0000550;gene_name=LINC00279;ID=exon:HG003_chrY_T0000550:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8243364	8260852	1000	+	.	source_transcript=ENST00000842838.1;source_transcript_name=LINC00279-215;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842838.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000551;gene_name=LINC00279;ID=HG003_chrY_T0000551;Name=LINC00279
HG003_chrY	CAT	exon	8243364	8243601	.	+	.	source_transcript=ENST00000842838.1;source_transcript_name=LINC00279-215;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842838.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000551;transcript_name=HG003_chrY_T0000551;gene_name=LINC00279;ID=exon:HG003_chrY_T0000551:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8243602	8259788	.	+	.	source_transcript=ENST00000842838.1;source_transcript_name=LINC00279-215;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842838.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000551;transcript_name=HG003_chrY_T0000551;gene_name=LINC00279;ID=intron:HG003_chrY_T0000551:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8259789	8259938	.	+	.	source_transcript=ENST00000842838.1;source_transcript_name=LINC00279-215;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842838.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000551;transcript_name=HG003_chrY_T0000551;gene_name=LINC00279;ID=exon:HG003_chrY_T0000551:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8259939	8260514	.	+	.	source_transcript=ENST00000842838.1;source_transcript_name=LINC00279-215;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842838.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000551;transcript_name=HG003_chrY_T0000551;gene_name=LINC00279;ID=intron:HG003_chrY_T0000551:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8260515	8260852	.	+	.	source_transcript=ENST00000842838.1;source_transcript_name=LINC00279-215;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842838.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842838.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000551;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000551;transcript_name=HG003_chrY_T0000551;gene_name=LINC00279;ID=exon:HG003_chrY_T0000551:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8243455	8260758	1000	+	.	source_transcript=ENST00000652539.1;source_transcript_name=LINC00279-207;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652539.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652539.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000552;gene_name=LINC00279;ID=HG003_chrY_T0000552;Name=LINC00279
HG003_chrY	CAT	exon	8243455	8243601	.	+	.	source_transcript=ENST00000652539.1;source_transcript_name=LINC00279-207;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652539.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652539.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000552;transcript_name=HG003_chrY_T0000552;gene_name=LINC00279;ID=exon:HG003_chrY_T0000552:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8243602	8249913	.	+	.	source_transcript=ENST00000652539.1;source_transcript_name=LINC00279-207;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652539.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652539.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000552;transcript_name=HG003_chrY_T0000552;gene_name=LINC00279;ID=intron:HG003_chrY_T0000552:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8249914	8250142	.	+	.	source_transcript=ENST00000652539.1;source_transcript_name=LINC00279-207;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652539.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652539.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000552;transcript_name=HG003_chrY_T0000552;gene_name=LINC00279;ID=exon:HG003_chrY_T0000552:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8250143	8254485	.	+	.	source_transcript=ENST00000652539.1;source_transcript_name=LINC00279-207;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652539.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652539.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000552;transcript_name=HG003_chrY_T0000552;gene_name=LINC00279;ID=intron:HG003_chrY_T0000552:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8254486	8254681	.	+	.	source_transcript=ENST00000652539.1;source_transcript_name=LINC00279-207;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652539.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652539.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000552;transcript_name=HG003_chrY_T0000552;gene_name=LINC00279;ID=exon:HG003_chrY_T0000552:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8254682	8259788	.	+	.	source_transcript=ENST00000652539.1;source_transcript_name=LINC00279-207;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652539.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652539.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000552;transcript_name=HG003_chrY_T0000552;gene_name=LINC00279;ID=intron:HG003_chrY_T0000552:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8259789	8259938	.	+	.	source_transcript=ENST00000652539.1;source_transcript_name=LINC00279-207;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652539.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652539.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000552;transcript_name=HG003_chrY_T0000552;gene_name=LINC00279;ID=exon:HG003_chrY_T0000552:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8259939	8260514	.	+	.	source_transcript=ENST00000652539.1;source_transcript_name=LINC00279-207;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652539.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652539.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000552;transcript_name=HG003_chrY_T0000552;gene_name=LINC00279;ID=intron:HG003_chrY_T0000552:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8260515	8260758	.	+	.	source_transcript=ENST00000652539.1;source_transcript_name=LINC00279-207;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652539.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652539.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000552;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000552;transcript_name=HG003_chrY_T0000552;gene_name=LINC00279;ID=exon:HG003_chrY_T0000552:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8248648	8255196	1000	+	.	source_transcript=ENST00000413486.2;source_transcript_name=LINC00279-201;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000413486.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000413486.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000553;gene_name=LINC00279;ID=HG003_chrY_T0000553;Name=LINC00279
HG003_chrY	CAT	exon	8248648	8248760	.	+	.	source_transcript=ENST00000413486.2;source_transcript_name=LINC00279-201;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000413486.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000413486.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000553;transcript_name=HG003_chrY_T0000553;gene_name=LINC00279;ID=exon:HG003_chrY_T0000553:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8248761	8254485	.	+	.	source_transcript=ENST00000413486.2;source_transcript_name=LINC00279-201;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000413486.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000413486.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000553;transcript_name=HG003_chrY_T0000553;gene_name=LINC00279;ID=intron:HG003_chrY_T0000553:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8254486	8254681	.	+	.	source_transcript=ENST00000413486.2;source_transcript_name=LINC00279-201;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000413486.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000413486.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000553;transcript_name=HG003_chrY_T0000553;gene_name=LINC00279;ID=exon:HG003_chrY_T0000553:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8254682	8255032	.	+	.	source_transcript=ENST00000413486.2;source_transcript_name=LINC00279-201;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000413486.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000413486.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000553;transcript_name=HG003_chrY_T0000553;gene_name=LINC00279;ID=intron:HG003_chrY_T0000553:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8255033	8255196	.	+	.	source_transcript=ENST00000413486.2;source_transcript_name=LINC00279-201;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000413486.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000413486.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000553;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000553;transcript_name=HG003_chrY_T0000553;gene_name=LINC00279;ID=exon:HG003_chrY_T0000553:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8270328	8271069	1000	+	.	source_transcript=ENST00000842844.1;source_transcript_name=LINC00279-221;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000554;gene_name=LINC00279;ID=HG003_chrY_T0000554;Name=LINC00279
HG003_chrY	CAT	exon	8270328	8270519	.	+	.	source_transcript=ENST00000842844.1;source_transcript_name=LINC00279-221;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000554;transcript_name=HG003_chrY_T0000554;gene_name=LINC00279;ID=exon:HG003_chrY_T0000554:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8270520	8270854	.	+	.	source_transcript=ENST00000842844.1;source_transcript_name=LINC00279-221;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000554;transcript_name=HG003_chrY_T0000554;gene_name=LINC00279;ID=intron:HG003_chrY_T0000554:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8270855	8271069	.	+	.	source_transcript=ENST00000842844.1;source_transcript_name=LINC00279-221;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000554;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000554;transcript_name=HG003_chrY_T0000554;gene_name=LINC00279;ID=exon:HG003_chrY_T0000554:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8288077	8293089	1000	+	.	source_transcript=ENST00000842841.1;source_transcript_name=LINC00279-218;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842841.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000567;gene_name=LINC00279;ID=HG003_chrY_T0000567;Name=LINC00279
HG003_chrY	CAT	exon	8288077	8288441	.	+	.	source_transcript=ENST00000842841.1;source_transcript_name=LINC00279-218;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842841.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000567;transcript_name=HG003_chrY_T0000567;gene_name=LINC00279;ID=exon:HG003_chrY_T0000567:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8288442	8288712	.	+	.	source_transcript=ENST00000842841.1;source_transcript_name=LINC00279-218;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842841.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000567;transcript_name=HG003_chrY_T0000567;gene_name=LINC00279;ID=intron:HG003_chrY_T0000567:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8288713	8288787	.	+	.	source_transcript=ENST00000842841.1;source_transcript_name=LINC00279-218;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842841.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000567;transcript_name=HG003_chrY_T0000567;gene_name=LINC00279;ID=exon:HG003_chrY_T0000567:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8288788	8291111	.	+	.	source_transcript=ENST00000842841.1;source_transcript_name=LINC00279-218;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842841.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000567;transcript_name=HG003_chrY_T0000567;gene_name=LINC00279;ID=intron:HG003_chrY_T0000567:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8291112	8291271	.	+	.	source_transcript=ENST00000842841.1;source_transcript_name=LINC00279-218;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842841.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000567;transcript_name=HG003_chrY_T0000567;gene_name=LINC00279;ID=exon:HG003_chrY_T0000567:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8291272	8292702	.	+	.	source_transcript=ENST00000842841.1;source_transcript_name=LINC00279-218;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842841.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000567;transcript_name=HG003_chrY_T0000567;gene_name=LINC00279;ID=intron:HG003_chrY_T0000567:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8292703	8293089	.	+	.	source_transcript=ENST00000842841.1;source_transcript_name=LINC00279-218;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842841.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842841.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000567;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000567;transcript_name=HG003_chrY_T0000567;gene_name=LINC00279;ID=exon:HG003_chrY_T0000567:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8288084	8289115	1000	+	.	source_transcript=ENST00000842843.1;source_transcript_name=LINC00279-220;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842843.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000568;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000568;gene_name=LINC00279;ID=HG003_chrY_T0000568;Name=LINC00279
HG003_chrY	CAT	exon	8288084	8288441	.	+	.	source_transcript=ENST00000842843.1;source_transcript_name=LINC00279-220;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000568;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000568;transcript_name=HG003_chrY_T0000568;gene_name=LINC00279;ID=exon:HG003_chrY_T0000568:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8288442	8288712	.	+	.	source_transcript=ENST00000842843.1;source_transcript_name=LINC00279-220;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000568;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000568;transcript_name=HG003_chrY_T0000568;gene_name=LINC00279;ID=intron:HG003_chrY_T0000568:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8288713	8288787	.	+	.	source_transcript=ENST00000842843.1;source_transcript_name=LINC00279-220;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000568;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000568;transcript_name=HG003_chrY_T0000568;gene_name=LINC00279;ID=exon:HG003_chrY_T0000568:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8288788	8288947	.	+	.	source_transcript=ENST00000842843.1;source_transcript_name=LINC00279-220;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000568;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000568;transcript_name=HG003_chrY_T0000568;gene_name=LINC00279;ID=intron:HG003_chrY_T0000568:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8288948	8289115	.	+	.	source_transcript=ENST00000842843.1;source_transcript_name=LINC00279-220;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842843.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000568;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000568;transcript_name=HG003_chrY_T0000568;gene_name=LINC00279;ID=exon:HG003_chrY_T0000568:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8288229	8297817	1000	+	.	source_transcript=ENST00000842840.1;source_transcript_name=LINC00279-217;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842840.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000569;gene_name=LINC00279;ID=HG003_chrY_T0000569;Name=LINC00279
HG003_chrY	CAT	exon	8288229	8288441	.	+	.	source_transcript=ENST00000842840.1;source_transcript_name=LINC00279-217;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842840.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000569;transcript_name=HG003_chrY_T0000569;gene_name=LINC00279;ID=exon:HG003_chrY_T0000569:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8288442	8288712	.	+	.	source_transcript=ENST00000842840.1;source_transcript_name=LINC00279-217;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842840.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000569;transcript_name=HG003_chrY_T0000569;gene_name=LINC00279;ID=intron:HG003_chrY_T0000569:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8288713	8288787	.	+	.	source_transcript=ENST00000842840.1;source_transcript_name=LINC00279-217;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842840.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000569;transcript_name=HG003_chrY_T0000569;gene_name=LINC00279;ID=exon:HG003_chrY_T0000569:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8288788	8291111	.	+	.	source_transcript=ENST00000842840.1;source_transcript_name=LINC00279-217;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842840.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000569;transcript_name=HG003_chrY_T0000569;gene_name=LINC00279;ID=intron:HG003_chrY_T0000569:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8291112	8291271	.	+	.	source_transcript=ENST00000842840.1;source_transcript_name=LINC00279-217;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842840.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000569;transcript_name=HG003_chrY_T0000569;gene_name=LINC00279;ID=exon:HG003_chrY_T0000569:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8291272	8292702	.	+	.	source_transcript=ENST00000842840.1;source_transcript_name=LINC00279-217;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842840.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000569;transcript_name=HG003_chrY_T0000569;gene_name=LINC00279;ID=intron:HG003_chrY_T0000569:2;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8292703	8292864	.	+	.	source_transcript=ENST00000842840.1;source_transcript_name=LINC00279-217;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842840.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000569;transcript_name=HG003_chrY_T0000569;gene_name=LINC00279;ID=exon:HG003_chrY_T0000569:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8292865	8297573	.	+	.	source_transcript=ENST00000842840.1;source_transcript_name=LINC00279-217;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842840.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000569;transcript_name=HG003_chrY_T0000569;gene_name=LINC00279;ID=intron:HG003_chrY_T0000569:3;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8297574	8297817	.	+	.	source_transcript=ENST00000842840.1;source_transcript_name=LINC00279-217;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842840.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000569;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000569;transcript_name=HG003_chrY_T0000569;gene_name=LINC00279;ID=exon:HG003_chrY_T0000569:4;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8296206	8297820	1000	+	.	source_transcript=ENST00000842842.1;source_transcript_name=LINC00279-219;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842842.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842842.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_G0000153;transcript_name=HG003_chrY_T0000577;gene_name=LINC00279;ID=HG003_chrY_T0000577;Name=LINC00279
HG003_chrY	CAT	exon	8296206	8296460	.	+	.	source_transcript=ENST00000842842.1;source_transcript_name=LINC00279-219;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842842.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842842.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000577;transcript_name=HG003_chrY_T0000577;gene_name=LINC00279;ID=exon:HG003_chrY_T0000577:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8296461	8297573	.	+	.	source_transcript=ENST00000842842.1;source_transcript_name=LINC00279-219;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842842.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842842.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000577;transcript_name=HG003_chrY_T0000577;gene_name=LINC00279;ID=intron:HG003_chrY_T0000577:0;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8297574	8297820	.	+	.	source_transcript=ENST00000842842.1;source_transcript_name=LINC00279-219;source_gene=ENSG00000286217.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286217.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000842842.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000842842.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00279;transcript_id=HG003_chrY_T0000577;gene_id=HG003_chrY_G0000153;Parent=HG003_chrY_T0000577;transcript_name=HG003_chrY_T0000577;gene_name=LINC00279;ID=exon:HG003_chrY_T0000577:1;Name=LINC00279;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8277769	8289554	.	-	.	source_gene_common_name=ENSG00000309700;source_gene=ENSG00000309700.1;alternative_source_transcripts=ENST00000843135.1,ENST00000843135.1;gene_id=HG003_chrY_G0000154;gene_biotype=lncRNA;gene_name=ENSG00000309700;gene_sources=liftoff;ID=HG003_chrY_G0000154;Name=ENSG00000309700
HG003_chrY	CAT	transcript	8277769	8288090	1000	-	.	source_transcript=ENST00000843135.1;source_transcript_name=ENST00000843135;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843135.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843135.1,ENST00000843135.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=HG003_chrY_T0000555;gene_name=ENSG00000309700;ID=HG003_chrY_T0000555;Name=ENSG00000309700
HG003_chrY	CAT	exon	8277769	8278011	.	-	.	source_transcript=ENST00000843135.1;source_transcript_name=ENST00000843135;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843135.1,ENST00000843135.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000555;transcript_name=HG003_chrY_T0000555;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000555:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8278012	8284119	.	-	.	source_transcript=ENST00000843135.1;source_transcript_name=ENST00000843135;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843135.1,ENST00000843135.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000555;transcript_name=HG003_chrY_T0000555;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000555:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8284120	8284268	.	-	.	source_transcript=ENST00000843135.1;source_transcript_name=ENST00000843135;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843135.1,ENST00000843135.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000555;transcript_name=HG003_chrY_T0000555;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000555:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8284269	8285246	.	-	.	source_transcript=ENST00000843135.1;source_transcript_name=ENST00000843135;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843135.1,ENST00000843135.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000555;transcript_name=HG003_chrY_T0000555;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000555:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8285247	8285321	.	-	.	source_transcript=ENST00000843135.1;source_transcript_name=ENST00000843135;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843135.1,ENST00000843135.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000555;transcript_name=HG003_chrY_T0000555;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000555:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8285322	8287619	.	-	.	source_transcript=ENST00000843135.1;source_transcript_name=ENST00000843135;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843135.1,ENST00000843135.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000555;transcript_name=HG003_chrY_T0000555;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000555:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8287620	8288090	.	-	.	source_transcript=ENST00000843135.1;source_transcript_name=ENST00000843135;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843135.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843135.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843135.1,ENST00000843135.1;transcript_id=HG003_chrY_T0000555;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000555;transcript_name=HG003_chrY_T0000555;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000555:3;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8277769	8284422	1000	-	.	source_transcript=ENST00000843140.1;source_transcript_name=ENST00000843140;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843140.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843140.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843140.1,ENST00000843140.1;transcript_id=HG003_chrY_T0000556;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=HG003_chrY_T0000556;gene_name=ENSG00000309700;ID=HG003_chrY_T0000556;Name=ENSG00000309700
HG003_chrY	CAT	exon	8277769	8278011	.	-	.	source_transcript=ENST00000843140.1;source_transcript_name=ENST00000843140;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843140.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843140.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843140.1,ENST00000843140.1;transcript_id=HG003_chrY_T0000556;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000556;transcript_name=HG003_chrY_T0000556;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000556:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8278012	8284119	.	-	.	source_transcript=ENST00000843140.1;source_transcript_name=ENST00000843140;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843140.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843140.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843140.1,ENST00000843140.1;transcript_id=HG003_chrY_T0000556;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000556;transcript_name=HG003_chrY_T0000556;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000556:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8284120	8284422	.	-	.	source_transcript=ENST00000843140.1;source_transcript_name=ENST00000843140;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843140.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843140.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843140.1,ENST00000843140.1;transcript_id=HG003_chrY_T0000556;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000556;transcript_name=HG003_chrY_T0000556;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000556:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8277770	8289533	1000	-	.	source_transcript=ENST00000843132.1;source_transcript_name=ENST00000843132;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843132.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843132.1,ENST00000843132.1;transcript_id=HG003_chrY_T0000557;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=HG003_chrY_T0000557;gene_name=ENSG00000309700;ID=HG003_chrY_T0000557;Name=ENSG00000309700
HG003_chrY	CAT	exon	8277770	8278011	.	-	.	source_transcript=ENST00000843132.1;source_transcript_name=ENST00000843132;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843132.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843132.1,ENST00000843132.1;transcript_id=HG003_chrY_T0000557;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000557;transcript_name=HG003_chrY_T0000557;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000557:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8278012	8284119	.	-	.	source_transcript=ENST00000843132.1;source_transcript_name=ENST00000843132;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843132.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843132.1,ENST00000843132.1;transcript_id=HG003_chrY_T0000557;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000557;transcript_name=HG003_chrY_T0000557;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000557:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8284120	8284268	.	-	.	source_transcript=ENST00000843132.1;source_transcript_name=ENST00000843132;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843132.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843132.1,ENST00000843132.1;transcript_id=HG003_chrY_T0000557;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000557;transcript_name=HG003_chrY_T0000557;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000557:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8284269	8285246	.	-	.	source_transcript=ENST00000843132.1;source_transcript_name=ENST00000843132;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843132.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843132.1,ENST00000843132.1;transcript_id=HG003_chrY_T0000557;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000557;transcript_name=HG003_chrY_T0000557;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000557:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8285247	8285321	.	-	.	source_transcript=ENST00000843132.1;source_transcript_name=ENST00000843132;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843132.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843132.1,ENST00000843132.1;transcript_id=HG003_chrY_T0000557;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000557;transcript_name=HG003_chrY_T0000557;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000557:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8285322	8287619	.	-	.	source_transcript=ENST00000843132.1;source_transcript_name=ENST00000843132;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843132.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843132.1,ENST00000843132.1;transcript_id=HG003_chrY_T0000557;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000557;transcript_name=HG003_chrY_T0000557;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000557:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8287620	8287850	.	-	.	source_transcript=ENST00000843132.1;source_transcript_name=ENST00000843132;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843132.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843132.1,ENST00000843132.1;transcript_id=HG003_chrY_T0000557;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000557;transcript_name=HG003_chrY_T0000557;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000557:3;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8287851	8289342	.	-	.	source_transcript=ENST00000843132.1;source_transcript_name=ENST00000843132;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843132.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843132.1,ENST00000843132.1;transcript_id=HG003_chrY_T0000557;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000557;transcript_name=HG003_chrY_T0000557;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000557:3;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8289343	8289533	.	-	.	source_transcript=ENST00000843132.1;source_transcript_name=ENST00000843132;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843132.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843132.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843132.1,ENST00000843132.1;transcript_id=HG003_chrY_T0000557;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000557;transcript_name=HG003_chrY_T0000557;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000557:4;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8277770	8289525	1000	-	.	source_transcript=ENST00000843133.1;source_transcript_name=ENST00000843133;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843133.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843133.1,ENST00000843133.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=HG003_chrY_T0000558;gene_name=ENSG00000309700;ID=HG003_chrY_T0000558;Name=ENSG00000309700
HG003_chrY	CAT	exon	8277770	8278011	.	-	.	source_transcript=ENST00000843133.1;source_transcript_name=ENST00000843133;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843133.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843133.1,ENST00000843133.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000558;transcript_name=HG003_chrY_T0000558;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000558:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8278012	8284119	.	-	.	source_transcript=ENST00000843133.1;source_transcript_name=ENST00000843133;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843133.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843133.1,ENST00000843133.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000558;transcript_name=HG003_chrY_T0000558;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000558:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8284120	8284268	.	-	.	source_transcript=ENST00000843133.1;source_transcript_name=ENST00000843133;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843133.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843133.1,ENST00000843133.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000558;transcript_name=HG003_chrY_T0000558;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000558:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8284269	8285246	.	-	.	source_transcript=ENST00000843133.1;source_transcript_name=ENST00000843133;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843133.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843133.1,ENST00000843133.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000558;transcript_name=HG003_chrY_T0000558;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000558:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8285247	8285321	.	-	.	source_transcript=ENST00000843133.1;source_transcript_name=ENST00000843133;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843133.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843133.1,ENST00000843133.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000558;transcript_name=HG003_chrY_T0000558;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000558:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8285322	8287619	.	-	.	source_transcript=ENST00000843133.1;source_transcript_name=ENST00000843133;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843133.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843133.1,ENST00000843133.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000558;transcript_name=HG003_chrY_T0000558;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000558:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8287620	8287703	.	-	.	source_transcript=ENST00000843133.1;source_transcript_name=ENST00000843133;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843133.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843133.1,ENST00000843133.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000558;transcript_name=HG003_chrY_T0000558;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000558:3;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8287704	8289342	.	-	.	source_transcript=ENST00000843133.1;source_transcript_name=ENST00000843133;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843133.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843133.1,ENST00000843133.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000558;transcript_name=HG003_chrY_T0000558;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000558:3;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8289343	8289525	.	-	.	source_transcript=ENST00000843133.1;source_transcript_name=ENST00000843133;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843133.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843133.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843133.1,ENST00000843133.1;transcript_id=HG003_chrY_T0000558;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000558;transcript_name=HG003_chrY_T0000558;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000558:4;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8277770	8289439	1000	-	.	source_transcript=ENST00000843134.1;source_transcript_name=ENST00000843134;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843134.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843134.1,ENST00000843134.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=HG003_chrY_T0000559;gene_name=ENSG00000309700;ID=HG003_chrY_T0000559;Name=ENSG00000309700
HG003_chrY	CAT	exon	8277770	8278011	.	-	.	source_transcript=ENST00000843134.1;source_transcript_name=ENST00000843134;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843134.1,ENST00000843134.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000559;transcript_name=HG003_chrY_T0000559;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000559:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8278012	8285246	.	-	.	source_transcript=ENST00000843134.1;source_transcript_name=ENST00000843134;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843134.1,ENST00000843134.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000559;transcript_name=HG003_chrY_T0000559;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000559:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8285247	8285321	.	-	.	source_transcript=ENST00000843134.1;source_transcript_name=ENST00000843134;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843134.1,ENST00000843134.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000559;transcript_name=HG003_chrY_T0000559;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000559:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8285322	8287619	.	-	.	source_transcript=ENST00000843134.1;source_transcript_name=ENST00000843134;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843134.1,ENST00000843134.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000559;transcript_name=HG003_chrY_T0000559;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000559:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8287620	8287703	.	-	.	source_transcript=ENST00000843134.1;source_transcript_name=ENST00000843134;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843134.1,ENST00000843134.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000559;transcript_name=HG003_chrY_T0000559;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000559:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8287704	8289342	.	-	.	source_transcript=ENST00000843134.1;source_transcript_name=ENST00000843134;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843134.1,ENST00000843134.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000559;transcript_name=HG003_chrY_T0000559;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000559:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8289343	8289439	.	-	.	source_transcript=ENST00000843134.1;source_transcript_name=ENST00000843134;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843134.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843134.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843134.1,ENST00000843134.1;transcript_id=HG003_chrY_T0000559;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000559;transcript_name=HG003_chrY_T0000559;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000559:3;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8277770	8288002	1000	-	.	source_transcript=ENST00000843136.1;source_transcript_name=ENST00000843136;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843136.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843136.1,ENST00000843136.1;transcript_id=HG003_chrY_T0000560;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=HG003_chrY_T0000560;gene_name=ENSG00000309700;ID=HG003_chrY_T0000560;Name=ENSG00000309700
HG003_chrY	CAT	exon	8277770	8278011	.	-	.	source_transcript=ENST00000843136.1;source_transcript_name=ENST00000843136;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843136.1,ENST00000843136.1;transcript_id=HG003_chrY_T0000560;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000560;transcript_name=HG003_chrY_T0000560;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000560:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8278012	8284119	.	-	.	source_transcript=ENST00000843136.1;source_transcript_name=ENST00000843136;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843136.1,ENST00000843136.1;transcript_id=HG003_chrY_T0000560;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000560;transcript_name=HG003_chrY_T0000560;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000560:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8284120	8284268	.	-	.	source_transcript=ENST00000843136.1;source_transcript_name=ENST00000843136;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843136.1,ENST00000843136.1;transcript_id=HG003_chrY_T0000560;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000560;transcript_name=HG003_chrY_T0000560;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000560:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8284269	8287619	.	-	.	source_transcript=ENST00000843136.1;source_transcript_name=ENST00000843136;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843136.1,ENST00000843136.1;transcript_id=HG003_chrY_T0000560;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000560;transcript_name=HG003_chrY_T0000560;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000560:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8287620	8288002	.	-	.	source_transcript=ENST00000843136.1;source_transcript_name=ENST00000843136;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843136.1,ENST00000843136.1;transcript_id=HG003_chrY_T0000560;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000560;transcript_name=HG003_chrY_T0000560;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000560:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8277770	8287956	1000	-	.	source_transcript=ENST00000843137.1;source_transcript_name=ENST00000843137;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843137.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843137.1,ENST00000843137.1;transcript_id=HG003_chrY_T0000561;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=HG003_chrY_T0000561;gene_name=ENSG00000309700;ID=HG003_chrY_T0000561;Name=ENSG00000309700
HG003_chrY	CAT	exon	8277770	8278011	.	-	.	source_transcript=ENST00000843137.1;source_transcript_name=ENST00000843137;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843137.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843137.1,ENST00000843137.1;transcript_id=HG003_chrY_T0000561;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000561;transcript_name=HG003_chrY_T0000561;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000561:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8278012	8285246	.	-	.	source_transcript=ENST00000843137.1;source_transcript_name=ENST00000843137;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843137.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843137.1,ENST00000843137.1;transcript_id=HG003_chrY_T0000561;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000561;transcript_name=HG003_chrY_T0000561;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000561:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8285247	8285321	.	-	.	source_transcript=ENST00000843137.1;source_transcript_name=ENST00000843137;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843137.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843137.1,ENST00000843137.1;transcript_id=HG003_chrY_T0000561;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000561;transcript_name=HG003_chrY_T0000561;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000561:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8285322	8287619	.	-	.	source_transcript=ENST00000843137.1;source_transcript_name=ENST00000843137;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843137.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843137.1,ENST00000843137.1;transcript_id=HG003_chrY_T0000561;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000561;transcript_name=HG003_chrY_T0000561;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000561:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8287620	8287956	.	-	.	source_transcript=ENST00000843137.1;source_transcript_name=ENST00000843137;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843137.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843137.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843137.1,ENST00000843137.1;transcript_id=HG003_chrY_T0000561;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000561;transcript_name=HG003_chrY_T0000561;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000561:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8277770	8287821	1000	-	.	source_transcript=ENST00000843138.1;source_transcript_name=ENST00000843138;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843138.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843138.1,ENST00000843138.1;transcript_id=HG003_chrY_T0000562;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=HG003_chrY_T0000562;gene_name=ENSG00000309700;ID=HG003_chrY_T0000562;Name=ENSG00000309700
HG003_chrY	CAT	exon	8277770	8278011	.	-	.	source_transcript=ENST00000843138.1;source_transcript_name=ENST00000843138;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843138.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843138.1,ENST00000843138.1;transcript_id=HG003_chrY_T0000562;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000562;transcript_name=HG003_chrY_T0000562;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000562:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8278012	8287619	.	-	.	source_transcript=ENST00000843138.1;source_transcript_name=ENST00000843138;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843138.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843138.1,ENST00000843138.1;transcript_id=HG003_chrY_T0000562;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000562;transcript_name=HG003_chrY_T0000562;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000562:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8287620	8287821	.	-	.	source_transcript=ENST00000843138.1;source_transcript_name=ENST00000843138;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843138.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843138.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843138.1,ENST00000843138.1;transcript_id=HG003_chrY_T0000562;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000562;transcript_name=HG003_chrY_T0000562;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000562:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8277771	8284412	1000	-	.	source_transcript=ENST00000843141.1;source_transcript_name=ENST00000843141;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843141.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843141.1,ENST00000843141.1;transcript_id=HG003_chrY_T0000563;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=HG003_chrY_T0000563;gene_name=ENSG00000309700;ID=HG003_chrY_T0000563;Name=ENSG00000309700
HG003_chrY	CAT	exon	8277771	8278011	.	-	.	source_transcript=ENST00000843141.1;source_transcript_name=ENST00000843141;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843141.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843141.1,ENST00000843141.1;transcript_id=HG003_chrY_T0000563;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000563;transcript_name=HG003_chrY_T0000563;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000563:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8278012	8279606	.	-	.	source_transcript=ENST00000843141.1;source_transcript_name=ENST00000843141;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843141.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843141.1,ENST00000843141.1;transcript_id=HG003_chrY_T0000563;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000563;transcript_name=HG003_chrY_T0000563;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000563:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8279607	8279645	.	-	.	source_transcript=ENST00000843141.1;source_transcript_name=ENST00000843141;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843141.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843141.1,ENST00000843141.1;transcript_id=HG003_chrY_T0000563;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000563;transcript_name=HG003_chrY_T0000563;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000563:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8279646	8284119	.	-	.	source_transcript=ENST00000843141.1;source_transcript_name=ENST00000843141;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843141.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843141.1,ENST00000843141.1;transcript_id=HG003_chrY_T0000563;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000563;transcript_name=HG003_chrY_T0000563;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000563:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8284120	8284412	.	-	.	source_transcript=ENST00000843141.1;source_transcript_name=ENST00000843141;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843141.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843141.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843141.1,ENST00000843141.1;transcript_id=HG003_chrY_T0000563;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000563;transcript_name=HG003_chrY_T0000563;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000563:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8282501	8289554	1000	-	.	source_transcript=ENST00000843139.1;source_transcript_name=ENST00000843139;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843139.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843139.1,ENST00000843139.1;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=HG003_chrY_T0000564;gene_name=ENSG00000309700;ID=HG003_chrY_T0000564;Name=ENSG00000309700
HG003_chrY	CAT	exon	8282501	8282965	.	-	.	source_transcript=ENST00000843139.1;source_transcript_name=ENST00000843139;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843139.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843139.1,ENST00000843139.1;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000564;transcript_name=HG003_chrY_T0000564;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000564:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8282966	8284119	.	-	.	source_transcript=ENST00000843139.1;source_transcript_name=ENST00000843139;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843139.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843139.1,ENST00000843139.1;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000564;transcript_name=HG003_chrY_T0000564;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000564:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8284120	8284268	.	-	.	source_transcript=ENST00000843139.1;source_transcript_name=ENST00000843139;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843139.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843139.1,ENST00000843139.1;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000564;transcript_name=HG003_chrY_T0000564;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000564:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8284269	8285246	.	-	.	source_transcript=ENST00000843139.1;source_transcript_name=ENST00000843139;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843139.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843139.1,ENST00000843139.1;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000564;transcript_name=HG003_chrY_T0000564;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000564:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8285247	8285321	.	-	.	source_transcript=ENST00000843139.1;source_transcript_name=ENST00000843139;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843139.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843139.1,ENST00000843139.1;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000564;transcript_name=HG003_chrY_T0000564;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000564:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8285322	8287619	.	-	.	source_transcript=ENST00000843139.1;source_transcript_name=ENST00000843139;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843139.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843139.1,ENST00000843139.1;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000564;transcript_name=HG003_chrY_T0000564;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000564:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8287620	8287703	.	-	.	source_transcript=ENST00000843139.1;source_transcript_name=ENST00000843139;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843139.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843139.1,ENST00000843139.1;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000564;transcript_name=HG003_chrY_T0000564;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000564:3;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8287704	8289342	.	-	.	source_transcript=ENST00000843139.1;source_transcript_name=ENST00000843139;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843139.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843139.1,ENST00000843139.1;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000564;transcript_name=HG003_chrY_T0000564;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000564:3;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8289343	8289554	.	-	.	source_transcript=ENST00000843139.1;source_transcript_name=ENST00000843139;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843139.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843139.1,ENST00000843139.1;transcript_id=HG003_chrY_T0000564;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000564;transcript_name=HG003_chrY_T0000564;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000564:4;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8282501	8284418	1000	-	.	source_transcript=ENST00000843143.1;source_transcript_name=ENST00000843143;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843143.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843143.1,ENST00000843143.1;transcript_id=HG003_chrY_T0000565;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=HG003_chrY_T0000565;gene_name=ENSG00000309700;ID=HG003_chrY_T0000565;Name=ENSG00000309700
HG003_chrY	CAT	exon	8282501	8282965	.	-	.	source_transcript=ENST00000843143.1;source_transcript_name=ENST00000843143;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843143.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843143.1,ENST00000843143.1;transcript_id=HG003_chrY_T0000565;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000565;transcript_name=HG003_chrY_T0000565;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000565:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8282966	8284119	.	-	.	source_transcript=ENST00000843143.1;source_transcript_name=ENST00000843143;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843143.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843143.1,ENST00000843143.1;transcript_id=HG003_chrY_T0000565;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000565;transcript_name=HG003_chrY_T0000565;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000565:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8284120	8284418	.	-	.	source_transcript=ENST00000843143.1;source_transcript_name=ENST00000843143;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843143.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843143.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843143.1,ENST00000843143.1;transcript_id=HG003_chrY_T0000565;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000565;transcript_name=HG003_chrY_T0000565;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000565:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8282504	8287789	1000	-	.	source_transcript=ENST00000843142.1;source_transcript_name=ENST00000843142;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843142.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843142.1,ENST00000843142.1;transcript_id=HG003_chrY_T0000566;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_G0000154;transcript_name=HG003_chrY_T0000566;gene_name=ENSG00000309700;ID=HG003_chrY_T0000566;Name=ENSG00000309700
HG003_chrY	CAT	exon	8282504	8282965	.	-	.	source_transcript=ENST00000843142.1;source_transcript_name=ENST00000843142;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843142.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843142.1,ENST00000843142.1;transcript_id=HG003_chrY_T0000566;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000566;transcript_name=HG003_chrY_T0000566;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000566:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8282966	8284119	.	-	.	source_transcript=ENST00000843142.1;source_transcript_name=ENST00000843142;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843142.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843142.1,ENST00000843142.1;transcript_id=HG003_chrY_T0000566;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000566;transcript_name=HG003_chrY_T0000566;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000566:0;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8284120	8284268	.	-	.	source_transcript=ENST00000843142.1;source_transcript_name=ENST00000843142;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843142.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843142.1,ENST00000843142.1;transcript_id=HG003_chrY_T0000566;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000566;transcript_name=HG003_chrY_T0000566;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000566:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8284269	8285246	.	-	.	source_transcript=ENST00000843142.1;source_transcript_name=ENST00000843142;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843142.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843142.1,ENST00000843142.1;transcript_id=HG003_chrY_T0000566;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000566;transcript_name=HG003_chrY_T0000566;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000566:1;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8285247	8285321	.	-	.	source_transcript=ENST00000843142.1;source_transcript_name=ENST00000843142;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843142.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843142.1,ENST00000843142.1;transcript_id=HG003_chrY_T0000566;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000566;transcript_name=HG003_chrY_T0000566;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000566:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8285322	8287619	.	-	.	source_transcript=ENST00000843142.1;source_transcript_name=ENST00000843142;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843142.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843142.1,ENST00000843142.1;transcript_id=HG003_chrY_T0000566;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000566;transcript_name=HG003_chrY_T0000566;gene_name=ENSG00000309700;ID=intron:HG003_chrY_T0000566:2;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8287620	8287789	.	-	.	source_transcript=ENST00000843142.1;source_transcript_name=ENST00000843142;source_gene=ENSG00000309700.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309700.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843142.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309700;alternative_source_transcripts=ENST00000843142.1,ENST00000843142.1;transcript_id=HG003_chrY_T0000566;gene_id=HG003_chrY_G0000154;Parent=HG003_chrY_T0000566;transcript_name=HG003_chrY_T0000566;gene_name=ENSG00000309700;ID=exon:HG003_chrY_T0000566:3;Name=ENSG00000309700;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8292950	8321301	.	-	.	source_gene_common_name=TTTY18;source_gene=ENSG00000233699.3;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;gene_id=HG003_chrY_G0000155;gene_biotype=lncRNA;gene_name=TTTY18;gene_sources=liftoff;ID=HG003_chrY_G0000155;Name=TTTY18
HG003_chrY	CAT	transcript	8292950	8311354	1000	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=HG003_chrY_T0000570;Name=TTTY18
HG003_chrY	CAT	exon	8292950	8293788	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=exon:HG003_chrY_T0000570:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8293789	8294076	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=intron:HG003_chrY_T0000570:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8294077	8294295	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=exon:HG003_chrY_T0000570:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8294296	8297038	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=intron:HG003_chrY_T0000570:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8297039	8297093	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=exon:HG003_chrY_T0000570:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8297094	8299432	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=intron:HG003_chrY_T0000570:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8299433	8299517	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=exon:HG003_chrY_T0000570:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8299518	8304133	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=intron:HG003_chrY_T0000570:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8304134	8304339	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=exon:HG003_chrY_T0000570:4;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8304340	8304823	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=intron:HG003_chrY_T0000570:4;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8304824	8304901	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=exon:HG003_chrY_T0000570:5;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8304902	8311194	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=intron:HG003_chrY_T0000570:5;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8311195	8311354	.	-	.	source_transcript=ENST00000438677.2;source_transcript_name=TTTY18-201;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000438677.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000438677.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000438677.2,ENST00000438677.2;transcript_id=HG003_chrY_T0000570;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000570;transcript_name=HG003_chrY_T0000570;gene_name=TTTY18;ID=exon:HG003_chrY_T0000570:6;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8292953	8301836	1000	-	.	source_transcript=ENST00000843014.1;source_transcript_name=TTTY18-204;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843014.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843014.1,ENST00000843014.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=HG003_chrY_T0000571;gene_name=TTTY18;ID=HG003_chrY_T0000571;Name=TTTY18
HG003_chrY	CAT	exon	8292953	8293788	.	-	.	source_transcript=ENST00000843014.1;source_transcript_name=TTTY18-204;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843014.1,ENST00000843014.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000571;transcript_name=HG003_chrY_T0000571;gene_name=TTTY18;ID=exon:HG003_chrY_T0000571:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8293789	8294076	.	-	.	source_transcript=ENST00000843014.1;source_transcript_name=TTTY18-204;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843014.1,ENST00000843014.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000571;transcript_name=HG003_chrY_T0000571;gene_name=TTTY18;ID=intron:HG003_chrY_T0000571:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8294077	8294295	.	-	.	source_transcript=ENST00000843014.1;source_transcript_name=TTTY18-204;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843014.1,ENST00000843014.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000571;transcript_name=HG003_chrY_T0000571;gene_name=TTTY18;ID=exon:HG003_chrY_T0000571:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8294296	8297038	.	-	.	source_transcript=ENST00000843014.1;source_transcript_name=TTTY18-204;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843014.1,ENST00000843014.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000571;transcript_name=HG003_chrY_T0000571;gene_name=TTTY18;ID=intron:HG003_chrY_T0000571:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8297039	8297093	.	-	.	source_transcript=ENST00000843014.1;source_transcript_name=TTTY18-204;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843014.1,ENST00000843014.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000571;transcript_name=HG003_chrY_T0000571;gene_name=TTTY18;ID=exon:HG003_chrY_T0000571:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8297094	8299432	.	-	.	source_transcript=ENST00000843014.1;source_transcript_name=TTTY18-204;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843014.1,ENST00000843014.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000571;transcript_name=HG003_chrY_T0000571;gene_name=TTTY18;ID=intron:HG003_chrY_T0000571:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8299433	8299517	.	-	.	source_transcript=ENST00000843014.1;source_transcript_name=TTTY18-204;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843014.1,ENST00000843014.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000571;transcript_name=HG003_chrY_T0000571;gene_name=TTTY18;ID=exon:HG003_chrY_T0000571:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8299518	8301626	.	-	.	source_transcript=ENST00000843014.1;source_transcript_name=TTTY18-204;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843014.1,ENST00000843014.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000571;transcript_name=HG003_chrY_T0000571;gene_name=TTTY18;ID=intron:HG003_chrY_T0000571:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8301627	8301836	.	-	.	source_transcript=ENST00000843014.1;source_transcript_name=TTTY18-204;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843014.1,ENST00000843014.1;transcript_id=HG003_chrY_T0000571;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000571;transcript_name=HG003_chrY_T0000571;gene_name=TTTY18;ID=exon:HG003_chrY_T0000571:4;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8293475	8301836	1000	-	.	source_transcript=ENST00000843015.1;source_transcript_name=TTTY18-205;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843015.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843015.1,ENST00000843015.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=HG003_chrY_T0000572;gene_name=TTTY18;ID=HG003_chrY_T0000572;Name=TTTY18
HG003_chrY	CAT	exon	8293475	8293788	.	-	.	source_transcript=ENST00000843015.1;source_transcript_name=TTTY18-205;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843015.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843015.1,ENST00000843015.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000572;transcript_name=HG003_chrY_T0000572;gene_name=TTTY18;ID=exon:HG003_chrY_T0000572:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8293789	8294076	.	-	.	source_transcript=ENST00000843015.1;source_transcript_name=TTTY18-205;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843015.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843015.1,ENST00000843015.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000572;transcript_name=HG003_chrY_T0000572;gene_name=TTTY18;ID=intron:HG003_chrY_T0000572:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8294077	8294295	.	-	.	source_transcript=ENST00000843015.1;source_transcript_name=TTTY18-205;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843015.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843015.1,ENST00000843015.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000572;transcript_name=HG003_chrY_T0000572;gene_name=TTTY18;ID=exon:HG003_chrY_T0000572:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8294296	8297038	.	-	.	source_transcript=ENST00000843015.1;source_transcript_name=TTTY18-205;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843015.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843015.1,ENST00000843015.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000572;transcript_name=HG003_chrY_T0000572;gene_name=TTTY18;ID=intron:HG003_chrY_T0000572:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8297039	8297093	.	-	.	source_transcript=ENST00000843015.1;source_transcript_name=TTTY18-205;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843015.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843015.1,ENST00000843015.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000572;transcript_name=HG003_chrY_T0000572;gene_name=TTTY18;ID=exon:HG003_chrY_T0000572:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8297094	8301626	.	-	.	source_transcript=ENST00000843015.1;source_transcript_name=TTTY18-205;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843015.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843015.1,ENST00000843015.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000572;transcript_name=HG003_chrY_T0000572;gene_name=TTTY18;ID=intron:HG003_chrY_T0000572:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8301627	8301836	.	-	.	source_transcript=ENST00000843015.1;source_transcript_name=TTTY18-205;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843015.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843015.1,ENST00000843015.1;transcript_id=HG003_chrY_T0000572;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000572;transcript_name=HG003_chrY_T0000572;gene_name=TTTY18;ID=exon:HG003_chrY_T0000572:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8293479	8301801	1000	-	.	source_transcript=ENST00000843016.1;source_transcript_name=TTTY18-206;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843016.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843016.1,ENST00000843016.1;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=HG003_chrY_T0000573;gene_name=TTTY18;ID=HG003_chrY_T0000573;Name=TTTY18
HG003_chrY	CAT	exon	8293479	8293788	.	-	.	source_transcript=ENST00000843016.1;source_transcript_name=TTTY18-206;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843016.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843016.1,ENST00000843016.1;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000573;transcript_name=HG003_chrY_T0000573;gene_name=TTTY18;ID=exon:HG003_chrY_T0000573:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8293789	8294076	.	-	.	source_transcript=ENST00000843016.1;source_transcript_name=TTTY18-206;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843016.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843016.1,ENST00000843016.1;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000573;transcript_name=HG003_chrY_T0000573;gene_name=TTTY18;ID=intron:HG003_chrY_T0000573:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8294077	8294295	.	-	.	source_transcript=ENST00000843016.1;source_transcript_name=TTTY18-206;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843016.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843016.1,ENST00000843016.1;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000573;transcript_name=HG003_chrY_T0000573;gene_name=TTTY18;ID=exon:HG003_chrY_T0000573:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8294296	8295877	.	-	.	source_transcript=ENST00000843016.1;source_transcript_name=TTTY18-206;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843016.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843016.1,ENST00000843016.1;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000573;transcript_name=HG003_chrY_T0000573;gene_name=TTTY18;ID=intron:HG003_chrY_T0000573:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8295878	8296013	.	-	.	source_transcript=ENST00000843016.1;source_transcript_name=TTTY18-206;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843016.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843016.1,ENST00000843016.1;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000573;transcript_name=HG003_chrY_T0000573;gene_name=TTTY18;ID=exon:HG003_chrY_T0000573:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8296014	8297038	.	-	.	source_transcript=ENST00000843016.1;source_transcript_name=TTTY18-206;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843016.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843016.1,ENST00000843016.1;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000573;transcript_name=HG003_chrY_T0000573;gene_name=TTTY18;ID=intron:HG003_chrY_T0000573:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8297039	8297093	.	-	.	source_transcript=ENST00000843016.1;source_transcript_name=TTTY18-206;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843016.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843016.1,ENST00000843016.1;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000573;transcript_name=HG003_chrY_T0000573;gene_name=TTTY18;ID=exon:HG003_chrY_T0000573:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8297094	8299432	.	-	.	source_transcript=ENST00000843016.1;source_transcript_name=TTTY18-206;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843016.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843016.1,ENST00000843016.1;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000573;transcript_name=HG003_chrY_T0000573;gene_name=TTTY18;ID=intron:HG003_chrY_T0000573:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8299433	8299517	.	-	.	source_transcript=ENST00000843016.1;source_transcript_name=TTTY18-206;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843016.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843016.1,ENST00000843016.1;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000573;transcript_name=HG003_chrY_T0000573;gene_name=TTTY18;ID=exon:HG003_chrY_T0000573:4;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8299518	8301626	.	-	.	source_transcript=ENST00000843016.1;source_transcript_name=TTTY18-206;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843016.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843016.1,ENST00000843016.1;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000573;transcript_name=HG003_chrY_T0000573;gene_name=TTTY18;ID=intron:HG003_chrY_T0000573:4;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8301627	8301801	.	-	.	source_transcript=ENST00000843016.1;source_transcript_name=TTTY18-206;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843016.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843016.1,ENST00000843016.1;transcript_id=HG003_chrY_T0000573;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000573;transcript_name=HG003_chrY_T0000573;gene_name=TTTY18;ID=exon:HG003_chrY_T0000573:5;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8293479	8301798	1000	-	.	source_transcript=ENST00000843017.1;source_transcript_name=TTTY18-207;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843017.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843017.1,ENST00000843017.1;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=HG003_chrY_T0000574;gene_name=TTTY18;ID=HG003_chrY_T0000574;Name=TTTY18
HG003_chrY	CAT	exon	8293479	8293788	.	-	.	source_transcript=ENST00000843017.1;source_transcript_name=TTTY18-207;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843017.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843017.1,ENST00000843017.1;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000574;transcript_name=HG003_chrY_T0000574;gene_name=TTTY18;ID=exon:HG003_chrY_T0000574:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8293789	8297038	.	-	.	source_transcript=ENST00000843017.1;source_transcript_name=TTTY18-207;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843017.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843017.1,ENST00000843017.1;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000574;transcript_name=HG003_chrY_T0000574;gene_name=TTTY18;ID=intron:HG003_chrY_T0000574:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8297039	8297093	.	-	.	source_transcript=ENST00000843017.1;source_transcript_name=TTTY18-207;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843017.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843017.1,ENST00000843017.1;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000574;transcript_name=HG003_chrY_T0000574;gene_name=TTTY18;ID=exon:HG003_chrY_T0000574:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8297094	8299432	.	-	.	source_transcript=ENST00000843017.1;source_transcript_name=TTTY18-207;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843017.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843017.1,ENST00000843017.1;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000574;transcript_name=HG003_chrY_T0000574;gene_name=TTTY18;ID=intron:HG003_chrY_T0000574:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8299433	8299517	.	-	.	source_transcript=ENST00000843017.1;source_transcript_name=TTTY18-207;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843017.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843017.1,ENST00000843017.1;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000574;transcript_name=HG003_chrY_T0000574;gene_name=TTTY18;ID=exon:HG003_chrY_T0000574:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8299518	8301626	.	-	.	source_transcript=ENST00000843017.1;source_transcript_name=TTTY18-207;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843017.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843017.1,ENST00000843017.1;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000574;transcript_name=HG003_chrY_T0000574;gene_name=TTTY18;ID=intron:HG003_chrY_T0000574:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8301627	8301798	.	-	.	source_transcript=ENST00000843017.1;source_transcript_name=TTTY18-207;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843017.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843017.1,ENST00000843017.1;transcript_id=HG003_chrY_T0000574;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000574;transcript_name=HG003_chrY_T0000574;gene_name=TTTY18;ID=exon:HG003_chrY_T0000574:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8293481	8321267	1000	-	.	source_transcript=ENST00000843012.1;source_transcript_name=TTTY18-202;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843012.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843012.1,ENST00000843012.1;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=HG003_chrY_T0000575;gene_name=TTTY18;ID=HG003_chrY_T0000575;Name=TTTY18
HG003_chrY	CAT	exon	8293481	8293788	.	-	.	source_transcript=ENST00000843012.1;source_transcript_name=TTTY18-202;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843012.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843012.1,ENST00000843012.1;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000575;transcript_name=HG003_chrY_T0000575;gene_name=TTTY18;ID=exon:HG003_chrY_T0000575:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8293789	8294076	.	-	.	source_transcript=ENST00000843012.1;source_transcript_name=TTTY18-202;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843012.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843012.1,ENST00000843012.1;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000575;transcript_name=HG003_chrY_T0000575;gene_name=TTTY18;ID=intron:HG003_chrY_T0000575:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8294077	8294295	.	-	.	source_transcript=ENST00000843012.1;source_transcript_name=TTTY18-202;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843012.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843012.1,ENST00000843012.1;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000575;transcript_name=HG003_chrY_T0000575;gene_name=TTTY18;ID=exon:HG003_chrY_T0000575:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8294296	8297038	.	-	.	source_transcript=ENST00000843012.1;source_transcript_name=TTTY18-202;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843012.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843012.1,ENST00000843012.1;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000575;transcript_name=HG003_chrY_T0000575;gene_name=TTTY18;ID=intron:HG003_chrY_T0000575:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8297039	8297093	.	-	.	source_transcript=ENST00000843012.1;source_transcript_name=TTTY18-202;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843012.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843012.1,ENST00000843012.1;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000575;transcript_name=HG003_chrY_T0000575;gene_name=TTTY18;ID=exon:HG003_chrY_T0000575:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8297094	8304133	.	-	.	source_transcript=ENST00000843012.1;source_transcript_name=TTTY18-202;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843012.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843012.1,ENST00000843012.1;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000575;transcript_name=HG003_chrY_T0000575;gene_name=TTTY18;ID=intron:HG003_chrY_T0000575:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8304134	8304339	.	-	.	source_transcript=ENST00000843012.1;source_transcript_name=TTTY18-202;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843012.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843012.1,ENST00000843012.1;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000575;transcript_name=HG003_chrY_T0000575;gene_name=TTTY18;ID=exon:HG003_chrY_T0000575:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8304340	8304823	.	-	.	source_transcript=ENST00000843012.1;source_transcript_name=TTTY18-202;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843012.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843012.1,ENST00000843012.1;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000575;transcript_name=HG003_chrY_T0000575;gene_name=TTTY18;ID=intron:HG003_chrY_T0000575:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8304824	8304901	.	-	.	source_transcript=ENST00000843012.1;source_transcript_name=TTTY18-202;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843012.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843012.1,ENST00000843012.1;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000575;transcript_name=HG003_chrY_T0000575;gene_name=TTTY18;ID=exon:HG003_chrY_T0000575:4;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8304902	8321094	.	-	.	source_transcript=ENST00000843012.1;source_transcript_name=TTTY18-202;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843012.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843012.1,ENST00000843012.1;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000575;transcript_name=HG003_chrY_T0000575;gene_name=TTTY18;ID=intron:HG003_chrY_T0000575:4;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8321095	8321267	.	-	.	source_transcript=ENST00000843012.1;source_transcript_name=TTTY18-202;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843012.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843012.1,ENST00000843012.1;transcript_id=HG003_chrY_T0000575;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000575;transcript_name=HG003_chrY_T0000575;gene_name=TTTY18;ID=exon:HG003_chrY_T0000575:5;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8293481	8296077	1000	-	.	source_transcript=ENST00000843022.1;source_transcript_name=TTTY18-212;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843022.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843022.1,ENST00000843022.1;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=HG003_chrY_T0000576;gene_name=TTTY18;ID=HG003_chrY_T0000576;Name=TTTY18
HG003_chrY	CAT	exon	8293481	8293788	.	-	.	source_transcript=ENST00000843022.1;source_transcript_name=TTTY18-212;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843022.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843022.1,ENST00000843022.1;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000576;transcript_name=HG003_chrY_T0000576;gene_name=TTTY18;ID=exon:HG003_chrY_T0000576:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8293789	8294076	.	-	.	source_transcript=ENST00000843022.1;source_transcript_name=TTTY18-212;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843022.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843022.1,ENST00000843022.1;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000576;transcript_name=HG003_chrY_T0000576;gene_name=TTTY18;ID=intron:HG003_chrY_T0000576:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8294077	8294295	.	-	.	source_transcript=ENST00000843022.1;source_transcript_name=TTTY18-212;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843022.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843022.1,ENST00000843022.1;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000576;transcript_name=HG003_chrY_T0000576;gene_name=TTTY18;ID=exon:HG003_chrY_T0000576:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8294296	8295877	.	-	.	source_transcript=ENST00000843022.1;source_transcript_name=TTTY18-212;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843022.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843022.1,ENST00000843022.1;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000576;transcript_name=HG003_chrY_T0000576;gene_name=TTTY18;ID=intron:HG003_chrY_T0000576:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8295878	8296077	.	-	.	source_transcript=ENST00000843022.1;source_transcript_name=TTTY18-212;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843022.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843022.1,ENST00000843022.1;transcript_id=HG003_chrY_T0000576;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000576;transcript_name=HG003_chrY_T0000576;gene_name=TTTY18;ID=exon:HG003_chrY_T0000576:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8297541	8301832	1000	-	.	source_transcript=ENST00000843021.1;source_transcript_name=TTTY18-211;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843021.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843021.1,ENST00000843021.1;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=HG003_chrY_T0000578;gene_name=TTTY18;ID=HG003_chrY_T0000578;Name=TTTY18
HG003_chrY	CAT	exon	8297541	8297722	.	-	.	source_transcript=ENST00000843021.1;source_transcript_name=TTTY18-211;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843021.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843021.1,ENST00000843021.1;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000578;transcript_name=HG003_chrY_T0000578;gene_name=TTTY18;ID=exon:HG003_chrY_T0000578:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8297723	8299432	.	-	.	source_transcript=ENST00000843021.1;source_transcript_name=TTTY18-211;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843021.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843021.1,ENST00000843021.1;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000578;transcript_name=HG003_chrY_T0000578;gene_name=TTTY18;ID=intron:HG003_chrY_T0000578:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8299433	8299517	.	-	.	source_transcript=ENST00000843021.1;source_transcript_name=TTTY18-211;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843021.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843021.1,ENST00000843021.1;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000578;transcript_name=HG003_chrY_T0000578;gene_name=TTTY18;ID=exon:HG003_chrY_T0000578:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8299518	8301626	.	-	.	source_transcript=ENST00000843021.1;source_transcript_name=TTTY18-211;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843021.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843021.1,ENST00000843021.1;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000578;transcript_name=HG003_chrY_T0000578;gene_name=TTTY18;ID=intron:HG003_chrY_T0000578:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8301627	8301832	.	-	.	source_transcript=ENST00000843021.1;source_transcript_name=TTTY18-211;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843021.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843021.1,ENST00000843021.1;transcript_id=HG003_chrY_T0000578;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000578;transcript_name=HG003_chrY_T0000578;gene_name=TTTY18;ID=exon:HG003_chrY_T0000578:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8297542	8301835	1000	-	.	source_transcript=ENST00000843020.1;source_transcript_name=TTTY18-210;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843020.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843020.1,ENST00000843020.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=HG003_chrY_T0000579;gene_name=TTTY18;ID=HG003_chrY_T0000579;Name=TTTY18
HG003_chrY	CAT	exon	8297542	8297789	.	-	.	source_transcript=ENST00000843020.1;source_transcript_name=TTTY18-210;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843020.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843020.1,ENST00000843020.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000579;transcript_name=HG003_chrY_T0000579;gene_name=TTTY18;ID=exon:HG003_chrY_T0000579:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8297790	8299432	.	-	.	source_transcript=ENST00000843020.1;source_transcript_name=TTTY18-210;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843020.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843020.1,ENST00000843020.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000579;transcript_name=HG003_chrY_T0000579;gene_name=TTTY18;ID=intron:HG003_chrY_T0000579:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8299433	8299517	.	-	.	source_transcript=ENST00000843020.1;source_transcript_name=TTTY18-210;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843020.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843020.1,ENST00000843020.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000579;transcript_name=HG003_chrY_T0000579;gene_name=TTTY18;ID=exon:HG003_chrY_T0000579:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8299518	8301626	.	-	.	source_transcript=ENST00000843020.1;source_transcript_name=TTTY18-210;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843020.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843020.1,ENST00000843020.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000579;transcript_name=HG003_chrY_T0000579;gene_name=TTTY18;ID=intron:HG003_chrY_T0000579:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8301627	8301835	.	-	.	source_transcript=ENST00000843020.1;source_transcript_name=TTTY18-210;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843020.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843020.1,ENST00000843020.1;transcript_id=HG003_chrY_T0000579;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000579;transcript_name=HG003_chrY_T0000579;gene_name=TTTY18;ID=exon:HG003_chrY_T0000579:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8297544	8305692	1000	-	.	source_transcript=ENST00000843018.1;source_transcript_name=TTTY18-208;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843018.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843018.1,ENST00000843018.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=HG003_chrY_T0000580;gene_name=TTTY18;ID=HG003_chrY_T0000580;Name=TTTY18
HG003_chrY	CAT	exon	8297544	8297722	.	-	.	source_transcript=ENST00000843018.1;source_transcript_name=TTTY18-208;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843018.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843018.1,ENST00000843018.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000580;transcript_name=HG003_chrY_T0000580;gene_name=TTTY18;ID=exon:HG003_chrY_T0000580:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8297723	8299432	.	-	.	source_transcript=ENST00000843018.1;source_transcript_name=TTTY18-208;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843018.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843018.1,ENST00000843018.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000580;transcript_name=HG003_chrY_T0000580;gene_name=TTTY18;ID=intron:HG003_chrY_T0000580:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8299433	8299517	.	-	.	source_transcript=ENST00000843018.1;source_transcript_name=TTTY18-208;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843018.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843018.1,ENST00000843018.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000580;transcript_name=HG003_chrY_T0000580;gene_name=TTTY18;ID=exon:HG003_chrY_T0000580:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8299518	8304133	.	-	.	source_transcript=ENST00000843018.1;source_transcript_name=TTTY18-208;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843018.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843018.1,ENST00000843018.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000580;transcript_name=HG003_chrY_T0000580;gene_name=TTTY18;ID=intron:HG003_chrY_T0000580:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8304134	8304339	.	-	.	source_transcript=ENST00000843018.1;source_transcript_name=TTTY18-208;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843018.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843018.1,ENST00000843018.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000580;transcript_name=HG003_chrY_T0000580;gene_name=TTTY18;ID=exon:HG003_chrY_T0000580:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8304340	8304823	.	-	.	source_transcript=ENST00000843018.1;source_transcript_name=TTTY18-208;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843018.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843018.1,ENST00000843018.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000580;transcript_name=HG003_chrY_T0000580;gene_name=TTTY18;ID=intron:HG003_chrY_T0000580:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8304824	8304901	.	-	.	source_transcript=ENST00000843018.1;source_transcript_name=TTTY18-208;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843018.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843018.1,ENST00000843018.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000580;transcript_name=HG003_chrY_T0000580;gene_name=TTTY18;ID=exon:HG003_chrY_T0000580:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8304902	8305482	.	-	.	source_transcript=ENST00000843018.1;source_transcript_name=TTTY18-208;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843018.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843018.1,ENST00000843018.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000580;transcript_name=HG003_chrY_T0000580;gene_name=TTTY18;ID=intron:HG003_chrY_T0000580:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8305483	8305692	.	-	.	source_transcript=ENST00000843018.1;source_transcript_name=TTTY18-208;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843018.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843018.1,ENST00000843018.1;transcript_id=HG003_chrY_T0000580;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000580;transcript_name=HG003_chrY_T0000580;gene_name=TTTY18;ID=exon:HG003_chrY_T0000580:4;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8303682	8321282	1000	-	.	source_transcript=ENST00000843013.1;source_transcript_name=TTTY18-203;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843013.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843013.1,ENST00000843013.1;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=HG003_chrY_T0000581;gene_name=TTTY18;ID=HG003_chrY_T0000581;Name=TTTY18
HG003_chrY	CAT	exon	8303682	8303771	.	-	.	source_transcript=ENST00000843013.1;source_transcript_name=TTTY18-203;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843013.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843013.1,ENST00000843013.1;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000581;transcript_name=HG003_chrY_T0000581;gene_name=TTTY18;ID=exon:HG003_chrY_T0000581:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8303772	8304133	.	-	.	source_transcript=ENST00000843013.1;source_transcript_name=TTTY18-203;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843013.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843013.1,ENST00000843013.1;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000581;transcript_name=HG003_chrY_T0000581;gene_name=TTTY18;ID=intron:HG003_chrY_T0000581:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8304134	8304339	.	-	.	source_transcript=ENST00000843013.1;source_transcript_name=TTTY18-203;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843013.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843013.1,ENST00000843013.1;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000581;transcript_name=HG003_chrY_T0000581;gene_name=TTTY18;ID=exon:HG003_chrY_T0000581:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8304340	8304823	.	-	.	source_transcript=ENST00000843013.1;source_transcript_name=TTTY18-203;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843013.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843013.1,ENST00000843013.1;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000581;transcript_name=HG003_chrY_T0000581;gene_name=TTTY18;ID=intron:HG003_chrY_T0000581:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8304824	8304901	.	-	.	source_transcript=ENST00000843013.1;source_transcript_name=TTTY18-203;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843013.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843013.1,ENST00000843013.1;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000581;transcript_name=HG003_chrY_T0000581;gene_name=TTTY18;ID=exon:HG003_chrY_T0000581:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8304902	8305482	.	-	.	source_transcript=ENST00000843013.1;source_transcript_name=TTTY18-203;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843013.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843013.1,ENST00000843013.1;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000581;transcript_name=HG003_chrY_T0000581;gene_name=TTTY18;ID=intron:HG003_chrY_T0000581:2;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8305483	8305699	.	-	.	source_transcript=ENST00000843013.1;source_transcript_name=TTTY18-203;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843013.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843013.1,ENST00000843013.1;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000581;transcript_name=HG003_chrY_T0000581;gene_name=TTTY18;ID=exon:HG003_chrY_T0000581:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8305700	8321094	.	-	.	source_transcript=ENST00000843013.1;source_transcript_name=TTTY18-203;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843013.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843013.1,ENST00000843013.1;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000581;transcript_name=HG003_chrY_T0000581;gene_name=TTTY18;ID=intron:HG003_chrY_T0000581:3;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8321095	8321282	.	-	.	source_transcript=ENST00000843013.1;source_transcript_name=TTTY18-203;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843013.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843013.1,ENST00000843013.1;transcript_id=HG003_chrY_T0000581;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000581;transcript_name=HG003_chrY_T0000581;gene_name=TTTY18;ID=exon:HG003_chrY_T0000581:4;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8314476	8321301	1000	-	.	source_transcript=ENST00000843019.1;source_transcript_name=TTTY18-209;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843019.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843019.1,ENST00000843019.1;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_G0000155;transcript_name=HG003_chrY_T0000582;gene_name=TTTY18;ID=HG003_chrY_T0000582;Name=TTTY18
HG003_chrY	CAT	exon	8314476	8314623	.	-	.	source_transcript=ENST00000843019.1;source_transcript_name=TTTY18-209;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843019.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843019.1,ENST00000843019.1;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000582;transcript_name=HG003_chrY_T0000582;gene_name=TTTY18;ID=exon:HG003_chrY_T0000582:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8314624	8321094	.	-	.	source_transcript=ENST00000843019.1;source_transcript_name=TTTY18-209;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843019.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843019.1,ENST00000843019.1;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000582;transcript_name=HG003_chrY_T0000582;gene_name=TTTY18;ID=intron:HG003_chrY_T0000582:0;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8321095	8321301	.	-	.	source_transcript=ENST00000843019.1;source_transcript_name=TTTY18-209;source_gene=ENSG00000233699.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233699.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000843019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000843019.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY18;alternative_source_transcripts=ENST00000843019.1,ENST00000843019.1;transcript_id=HG003_chrY_T0000582;gene_id=HG003_chrY_G0000155;Parent=HG003_chrY_T0000582;transcript_name=HG003_chrY_T0000582;gene_name=TTTY18;ID=exon:HG003_chrY_T0000582:1;Name=TTTY18;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8314851	8315662	.	+	.	source_gene_common_name=TTTY19;source_gene=ENSG00000232419.1;gene_id=HG003_chrY_G0000156;gene_biotype=lncRNA;gene_name=TTTY19;gene_sources=liftoff;ID=HG003_chrY_G0000156;Name=TTTY19
HG003_chrY	CAT	transcript	8314851	8315662	1000	+	.	source_transcript=ENST00000453955.1;source_transcript_name=TTTY19-201;source_gene=ENSG00000232419.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000232419.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000453955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453955.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY19;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_G0000156;transcript_name=HG003_chrY_T0000583;gene_name=TTTY19;ID=HG003_chrY_T0000583;Name=TTTY19
HG003_chrY	CAT	exon	8314851	8314938	.	+	.	source_transcript=ENST00000453955.1;source_transcript_name=TTTY19-201;source_gene=ENSG00000232419.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000232419.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000453955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453955.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY19;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000583;transcript_name=HG003_chrY_T0000583;gene_name=TTTY19;ID=exon:HG003_chrY_T0000583:0;Name=TTTY19;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8314939	8315481	.	+	.	source_transcript=ENST00000453955.1;source_transcript_name=TTTY19-201;source_gene=ENSG00000232419.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000232419.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000453955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453955.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY19;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000583;transcript_name=HG003_chrY_T0000583;gene_name=TTTY19;ID=intron:HG003_chrY_T0000583:0;Name=TTTY19;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8315482	8315662	.	+	.	source_transcript=ENST00000453955.1;source_transcript_name=TTTY19-201;source_gene=ENSG00000232419.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000232419.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000453955.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453955.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY19;transcript_id=HG003_chrY_T0000583;gene_id=HG003_chrY_G0000156;Parent=HG003_chrY_T0000583;transcript_name=HG003_chrY_T0000583;gene_name=TTTY19;ID=exon:HG003_chrY_T0000583:1;Name=TTTY19;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8332152	8349636	.	-	.	source_gene_common_name=ENSG00000309903;source_gene=ENSG00000309903.1;alternative_source_transcripts=ENST00000845393.1,ENST00000845393.1;gene_id=HG003_chrY_G0000157;gene_biotype=lncRNA;gene_name=ENSG00000309903;gene_sources=liftoff;ID=HG003_chrY_G0000157;Name=ENSG00000309903
HG003_chrY	CAT	transcript	8332152	8334671	1000	-	.	source_transcript=ENST00000845393.1;source_transcript_name=ENST00000845393;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845393.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845393.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845393.1,ENST00000845393.1;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_G0000157;transcript_name=HG003_chrY_T0000584;gene_name=ENSG00000309903;ID=HG003_chrY_T0000584;Name=ENSG00000309903
HG003_chrY	CAT	exon	8332152	8332468	.	-	.	source_transcript=ENST00000845393.1;source_transcript_name=ENST00000845393;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845393.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845393.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845393.1,ENST00000845393.1;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000584;transcript_name=HG003_chrY_T0000584;gene_name=ENSG00000309903;ID=exon:HG003_chrY_T0000584:0;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8332469	8332565	.	-	.	source_transcript=ENST00000845393.1;source_transcript_name=ENST00000845393;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845393.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845393.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845393.1,ENST00000845393.1;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000584;transcript_name=HG003_chrY_T0000584;gene_name=ENSG00000309903;ID=intron:HG003_chrY_T0000584:0;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8332566	8332661	.	-	.	source_transcript=ENST00000845393.1;source_transcript_name=ENST00000845393;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845393.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845393.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845393.1,ENST00000845393.1;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000584;transcript_name=HG003_chrY_T0000584;gene_name=ENSG00000309903;ID=exon:HG003_chrY_T0000584:1;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8332662	8332751	.	-	.	source_transcript=ENST00000845393.1;source_transcript_name=ENST00000845393;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845393.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845393.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845393.1,ENST00000845393.1;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000584;transcript_name=HG003_chrY_T0000584;gene_name=ENSG00000309903;ID=intron:HG003_chrY_T0000584:1;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8332752	8333014	.	-	.	source_transcript=ENST00000845393.1;source_transcript_name=ENST00000845393;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845393.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845393.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845393.1,ENST00000845393.1;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000584;transcript_name=HG003_chrY_T0000584;gene_name=ENSG00000309903;ID=exon:HG003_chrY_T0000584:2;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8333015	8334482	.	-	.	source_transcript=ENST00000845393.1;source_transcript_name=ENST00000845393;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845393.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845393.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845393.1,ENST00000845393.1;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000584;transcript_name=HG003_chrY_T0000584;gene_name=ENSG00000309903;ID=intron:HG003_chrY_T0000584:2;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8334483	8334671	.	-	.	source_transcript=ENST00000845393.1;source_transcript_name=ENST00000845393;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845393.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845393.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845393.1,ENST00000845393.1;transcript_id=HG003_chrY_T0000584;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000584;transcript_name=HG003_chrY_T0000584;gene_name=ENSG00000309903;ID=exon:HG003_chrY_T0000584:3;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8332155	8349636	1000	-	.	source_transcript=ENST00000845392.1;source_transcript_name=ENST00000845392;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845392.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845392.1,ENST00000845392.1;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_G0000157;transcript_name=HG003_chrY_T0000585;gene_name=ENSG00000309903;ID=HG003_chrY_T0000585;Name=ENSG00000309903
HG003_chrY	CAT	exon	8332155	8332468	.	-	.	source_transcript=ENST00000845392.1;source_transcript_name=ENST00000845392;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845392.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845392.1,ENST00000845392.1;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000585;transcript_name=HG003_chrY_T0000585;gene_name=ENSG00000309903;ID=exon:HG003_chrY_T0000585:0;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8332469	8332565	.	-	.	source_transcript=ENST00000845392.1;source_transcript_name=ENST00000845392;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845392.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845392.1,ENST00000845392.1;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000585;transcript_name=HG003_chrY_T0000585;gene_name=ENSG00000309903;ID=intron:HG003_chrY_T0000585:0;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8332566	8332661	.	-	.	source_transcript=ENST00000845392.1;source_transcript_name=ENST00000845392;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845392.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845392.1,ENST00000845392.1;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000585;transcript_name=HG003_chrY_T0000585;gene_name=ENSG00000309903;ID=exon:HG003_chrY_T0000585:1;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8332662	8332751	.	-	.	source_transcript=ENST00000845392.1;source_transcript_name=ENST00000845392;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845392.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845392.1,ENST00000845392.1;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000585;transcript_name=HG003_chrY_T0000585;gene_name=ENSG00000309903;ID=intron:HG003_chrY_T0000585:1;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8332752	8333014	.	-	.	source_transcript=ENST00000845392.1;source_transcript_name=ENST00000845392;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845392.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845392.1,ENST00000845392.1;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000585;transcript_name=HG003_chrY_T0000585;gene_name=ENSG00000309903;ID=exon:HG003_chrY_T0000585:2;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8333015	8343748	.	-	.	source_transcript=ENST00000845392.1;source_transcript_name=ENST00000845392;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845392.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845392.1,ENST00000845392.1;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000585;transcript_name=HG003_chrY_T0000585;gene_name=ENSG00000309903;ID=intron:HG003_chrY_T0000585:2;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8343749	8343848	.	-	.	source_transcript=ENST00000845392.1;source_transcript_name=ENST00000845392;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845392.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845392.1,ENST00000845392.1;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000585;transcript_name=HG003_chrY_T0000585;gene_name=ENSG00000309903;ID=exon:HG003_chrY_T0000585:3;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8343849	8349456	.	-	.	source_transcript=ENST00000845392.1;source_transcript_name=ENST00000845392;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845392.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845392.1,ENST00000845392.1;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000585;transcript_name=HG003_chrY_T0000585;gene_name=ENSG00000309903;ID=intron:HG003_chrY_T0000585:3;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8349457	8349636	.	-	.	source_transcript=ENST00000845392.1;source_transcript_name=ENST00000845392;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845392.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845392.1,ENST00000845392.1;transcript_id=HG003_chrY_T0000585;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000585;transcript_name=HG003_chrY_T0000585;gene_name=ENSG00000309903;ID=exon:HG003_chrY_T0000585:4;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8332703	8334648	1000	-	.	source_transcript=ENST00000845394.1;source_transcript_name=ENST00000845394;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845394.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845394.1,ENST00000845394.1;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_G0000157;transcript_name=HG003_chrY_T0000586;gene_name=ENSG00000309903;ID=HG003_chrY_T0000586;Name=ENSG00000309903
HG003_chrY	CAT	exon	8332703	8333014	.	-	.	source_transcript=ENST00000845394.1;source_transcript_name=ENST00000845394;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845394.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845394.1,ENST00000845394.1;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000586;transcript_name=HG003_chrY_T0000586;gene_name=ENSG00000309903;ID=exon:HG003_chrY_T0000586:0;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8333015	8334482	.	-	.	source_transcript=ENST00000845394.1;source_transcript_name=ENST00000845394;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845394.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845394.1,ENST00000845394.1;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000586;transcript_name=HG003_chrY_T0000586;gene_name=ENSG00000309903;ID=intron:HG003_chrY_T0000586:0;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8334483	8334648	.	-	.	source_transcript=ENST00000845394.1;source_transcript_name=ENST00000845394;source_gene=ENSG00000309903.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309903.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000845394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000845394.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309903;alternative_source_transcripts=ENST00000845394.1,ENST00000845394.1;transcript_id=HG003_chrY_T0000586;gene_id=HG003_chrY_G0000157;Parent=HG003_chrY_T0000586;transcript_name=HG003_chrY_T0000586;gene_name=ENSG00000309903;ID=exon:HG003_chrY_T0000586:1;Name=ENSG00000309903;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8393705	8427855	.	-	.	source_gene_common_name=TTTY11;source_gene=ENSG00000290381.2;gene_id=HG003_chrY_G0000158;gene_biotype=lncRNA;gene_name=TTTY11;gene_sources=liftoff;ID=HG003_chrY_G0000158;Name=TTTY11
HG003_chrY	CAT	transcript	8393705	8427774	1000	-	.	source_transcript=ENST00000253470.4;source_transcript_name=TTTY11-202;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253470.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253470.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_G0000158;transcript_name=HG003_chrY_T0000587;gene_name=TTTY11;ID=HG003_chrY_T0000587;Name=TTTY11
HG003_chrY	CAT	exon	8393705	8393801	.	-	.	source_transcript=ENST00000253470.4;source_transcript_name=TTTY11-202;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253470.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253470.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000587;transcript_name=HG003_chrY_T0000587;gene_name=TTTY11;ID=exon:HG003_chrY_T0000587:0;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8393802	8394282	.	-	.	source_transcript=ENST00000253470.4;source_transcript_name=TTTY11-202;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253470.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253470.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000587;transcript_name=HG003_chrY_T0000587;gene_name=TTTY11;ID=intron:HG003_chrY_T0000587:0;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8394283	8394598	.	-	.	source_transcript=ENST00000253470.4;source_transcript_name=TTTY11-202;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253470.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253470.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000587;transcript_name=HG003_chrY_T0000587;gene_name=TTTY11;ID=exon:HG003_chrY_T0000587:1;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8394599	8399394	.	-	.	source_transcript=ENST00000253470.4;source_transcript_name=TTTY11-202;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253470.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253470.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000587;transcript_name=HG003_chrY_T0000587;gene_name=TTTY11;ID=intron:HG003_chrY_T0000587:1;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8399395	8399697	.	-	.	source_transcript=ENST00000253470.4;source_transcript_name=TTTY11-202;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253470.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253470.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000587;transcript_name=HG003_chrY_T0000587;gene_name=TTTY11;ID=exon:HG003_chrY_T0000587:2;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8399698	8405255	.	-	.	source_transcript=ENST00000253470.4;source_transcript_name=TTTY11-202;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253470.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253470.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000587;transcript_name=HG003_chrY_T0000587;gene_name=TTTY11;ID=intron:HG003_chrY_T0000587:2;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8405256	8405339	.	-	.	source_transcript=ENST00000253470.4;source_transcript_name=TTTY11-202;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253470.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253470.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000587;transcript_name=HG003_chrY_T0000587;gene_name=TTTY11;ID=exon:HG003_chrY_T0000587:3;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8405340	8427737	.	-	.	source_transcript=ENST00000253470.4;source_transcript_name=TTTY11-202;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253470.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253470.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000587;transcript_name=HG003_chrY_T0000587;gene_name=TTTY11;ID=intron:HG003_chrY_T0000587:3;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8427738	8427774	.	-	.	source_transcript=ENST00000253470.4;source_transcript_name=TTTY11-202;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253470.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253470.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000587;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000587;transcript_name=HG003_chrY_T0000587;gene_name=TTTY11;ID=exon:HG003_chrY_T0000587:4;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8425868	8427855	1000	-	.	source_transcript=ENST00000806873.1;source_transcript_name=TTTY11-203;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000806873.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000806873.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000589;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_G0000158;transcript_name=HG003_chrY_T0000589;gene_name=TTTY11;ID=HG003_chrY_T0000589;Name=TTTY11
HG003_chrY	CAT	exon	8425868	8426321	.	-	.	source_transcript=ENST00000806873.1;source_transcript_name=TTTY11-203;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000806873.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000806873.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000589;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000589;transcript_name=HG003_chrY_T0000589;gene_name=TTTY11;ID=exon:HG003_chrY_T0000589:0;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8426322	8427737	.	-	.	source_transcript=ENST00000806873.1;source_transcript_name=TTTY11-203;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000806873.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000806873.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000589;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000589;transcript_name=HG003_chrY_T0000589;gene_name=TTTY11;ID=intron:HG003_chrY_T0000589:0;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8427738	8427855	.	-	.	source_transcript=ENST00000806873.1;source_transcript_name=TTTY11-203;source_gene=ENSG00000290381.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290381.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000806873.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000806873.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000589;gene_id=HG003_chrY_G0000158;Parent=HG003_chrY_T0000589;transcript_name=HG003_chrY_T0000589;gene_name=TTTY11;ID=exon:HG003_chrY_T0000589:1;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8399395	8399697	.	-	.	source_gene_common_name=TTTY11;source_gene=ENSG00000180910.9;gene_id=HG003_chrY_G0000159;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TTTY11;gene_sources=liftoff;ID=HG003_chrY_G0000159;Name=TTTY11
HG003_chrY	CAT	transcript	8399395	8399697	1000	-	.	source_transcript=ENST00000651367.1;source_transcript_name=TTTY11-201;source_gene=ENSG00000180910.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000180910.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000651367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651367.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000159;Parent=HG003_chrY_G0000159;transcript_name=HG003_chrY_T0000588;gene_name=TTTY11;ID=HG003_chrY_T0000588;Name=TTTY11
HG003_chrY	CAT	exon	8399395	8399697	.	-	.	source_transcript=ENST00000651367.1;source_transcript_name=TTTY11-201;source_gene=ENSG00000180910.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000180910.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000651367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY11;transcript_id=HG003_chrY_T0000588;gene_id=HG003_chrY_G0000159;Parent=HG003_chrY_T0000588;transcript_name=HG003_chrY_T0000588;gene_name=TTTY11;ID=exon:HG003_chrY_T0000588:0;Name=TTTY11;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8511676	8513749	.	-	.	source_gene_common_name=ENSG00000228207;source_gene=ENSG00000228207.1;alternative_source_transcripts=ENST00000432613.1,ENST00000432613.1;gene_id=HG003_chrY_G0000160;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000228207;gene_sources=liftoff;ID=HG003_chrY_G0000160;Name=ENSG00000228207
HG003_chrY	CAT	transcript	8511676	8513749	1000	-	.	source_transcript=ENST00000432613.1;source_transcript_name=ENST00000432613;source_gene=ENSG00000228207.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228207.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000432613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432613.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228207;alternative_source_transcripts=ENST00000432613.1,ENST00000432613.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_G0000160;transcript_name=HG003_chrY_T0000590;gene_name=ENSG00000228207;ID=HG003_chrY_T0000590;Name=ENSG00000228207
HG003_chrY	CAT	exon	8511676	8511731	.	-	.	source_transcript=ENST00000432613.1;source_transcript_name=ENST00000432613;source_gene=ENSG00000228207.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228207.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000432613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432613.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228207;alternative_source_transcripts=ENST00000432613.1,ENST00000432613.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000590;transcript_name=HG003_chrY_T0000590;gene_name=ENSG00000228207;ID=exon:HG003_chrY_T0000590:0;Name=ENSG00000228207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8511732	8511842	.	-	.	source_transcript=ENST00000432613.1;source_transcript_name=ENST00000432613;source_gene=ENSG00000228207.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228207.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000432613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432613.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228207;alternative_source_transcripts=ENST00000432613.1,ENST00000432613.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000590;transcript_name=HG003_chrY_T0000590;gene_name=ENSG00000228207;ID=intron:HG003_chrY_T0000590:0;Name=ENSG00000228207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8511843	8511986	.	-	.	source_transcript=ENST00000432613.1;source_transcript_name=ENST00000432613;source_gene=ENSG00000228207.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228207.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000432613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432613.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228207;alternative_source_transcripts=ENST00000432613.1,ENST00000432613.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000590;transcript_name=HG003_chrY_T0000590;gene_name=ENSG00000228207;ID=exon:HG003_chrY_T0000590:1;Name=ENSG00000228207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8511987	8512073	.	-	.	source_transcript=ENST00000432613.1;source_transcript_name=ENST00000432613;source_gene=ENSG00000228207.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228207.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000432613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432613.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228207;alternative_source_transcripts=ENST00000432613.1,ENST00000432613.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000590;transcript_name=HG003_chrY_T0000590;gene_name=ENSG00000228207;ID=intron:HG003_chrY_T0000590:1;Name=ENSG00000228207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8512074	8512212	.	-	.	source_transcript=ENST00000432613.1;source_transcript_name=ENST00000432613;source_gene=ENSG00000228207.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228207.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000432613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432613.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228207;alternative_source_transcripts=ENST00000432613.1,ENST00000432613.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000590;transcript_name=HG003_chrY_T0000590;gene_name=ENSG00000228207;ID=exon:HG003_chrY_T0000590:2;Name=ENSG00000228207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8512213	8513463	.	-	.	source_transcript=ENST00000432613.1;source_transcript_name=ENST00000432613;source_gene=ENSG00000228207.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228207.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000432613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432613.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228207;alternative_source_transcripts=ENST00000432613.1,ENST00000432613.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000590;transcript_name=HG003_chrY_T0000590;gene_name=ENSG00000228207;ID=intron:HG003_chrY_T0000590:2;Name=ENSG00000228207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8513464	8513749	.	-	.	source_transcript=ENST00000432613.1;source_transcript_name=ENST00000432613;source_gene=ENSG00000228207.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228207.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000432613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432613.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228207;alternative_source_transcripts=ENST00000432613.1,ENST00000432613.1;transcript_id=HG003_chrY_T0000590;gene_id=HG003_chrY_G0000160;Parent=HG003_chrY_T0000590;transcript_name=HG003_chrY_T0000590;gene_name=ENSG00000228207;ID=exon:HG003_chrY_T0000590:3;Name=ENSG00000228207;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8516697	8526546	.	+	.	source_gene_common_name=ENSG00000173357;source_gene=ENSG00000173357.13;gene_id=HG003_chrY_G0000161;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000173357;gene_sources=liftoff;ID=HG003_chrY_G0000161;Name=ENSG00000173357
HG003_chrY	CAT	transcript	8516697	8526546	1000	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_G0000161;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=HG003_chrY_T0000591;Name=ENSG00000173357
HG003_chrY	CAT	exon	8516697	8516805	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=exon:HG003_chrY_T0000591:0;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8516806	8517566	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=intron:HG003_chrY_T0000591:0;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8517567	8517670	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=exon:HG003_chrY_T0000591:1;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8517671	8520355	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=intron:HG003_chrY_T0000591:1;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8520356	8520533	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=exon:HG003_chrY_T0000591:2;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8520534	8522418	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=intron:HG003_chrY_T0000591:2;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8522419	8522571	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=exon:HG003_chrY_T0000591:3;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8522572	8524565	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=intron:HG003_chrY_T0000591:3;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8524566	8524677	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=exon:HG003_chrY_T0000591:4;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8524678	8525556	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=intron:HG003_chrY_T0000591:4;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8525557	8525667	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=exon:HG003_chrY_T0000591:5;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8525668	8525748	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=intron:HG003_chrY_T0000591:5;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8525749	8525837	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=exon:HG003_chrY_T0000591:6;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8525838	8526243	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=intron:HG003_chrY_T0000591:6;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8526244	8526546	.	+	.	source_transcript=ENST00000455422.5;source_transcript_name=ENST00000455422;source_gene=ENSG00000173357.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000173357.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000455422.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000455422.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000173357;transcript_id=HG003_chrY_T0000591;gene_id=HG003_chrY_G0000161;Parent=HG003_chrY_T0000591;transcript_name=HG003_chrY_T0000591;gene_name=ENSG00000173357;ID=exon:HG003_chrY_T0000591:7;Name=ENSG00000173357;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8520421	8524628	.	+	.	source_gene_common_name=ENSG00000290342;source_gene=ENSG00000290342.1;gene_id=HG003_chrY_G0000162;gene_biotype=lncRNA;gene_name=ENSG00000290342;gene_sources=liftoff;ID=HG003_chrY_G0000162;Name=ENSG00000290342
HG003_chrY	CAT	transcript	8520421	8524628	1000	+	.	source_transcript=ENST00000311828.7;source_transcript_name=ENST00000311828;source_gene=ENSG00000290342.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290342.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000311828.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000311828.7;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290342;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_G0000162;transcript_name=HG003_chrY_T0000592;gene_name=ENSG00000290342;ID=HG003_chrY_T0000592;Name=ENSG00000290342
HG003_chrY	CAT	exon	8520421	8520533	.	+	.	source_transcript=ENST00000311828.7;source_transcript_name=ENST00000311828;source_gene=ENSG00000290342.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290342.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000311828.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000311828.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290342;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000592;transcript_name=HG003_chrY_T0000592;gene_name=ENSG00000290342;ID=exon:HG003_chrY_T0000592:0;Name=ENSG00000290342;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8520534	8522418	.	+	.	source_transcript=ENST00000311828.7;source_transcript_name=ENST00000311828;source_gene=ENSG00000290342.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290342.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000311828.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000311828.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290342;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000592;transcript_name=HG003_chrY_T0000592;gene_name=ENSG00000290342;ID=intron:HG003_chrY_T0000592:0;Name=ENSG00000290342;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8522419	8522571	.	+	.	source_transcript=ENST00000311828.7;source_transcript_name=ENST00000311828;source_gene=ENSG00000290342.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290342.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000311828.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000311828.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290342;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000592;transcript_name=HG003_chrY_T0000592;gene_name=ENSG00000290342;ID=exon:HG003_chrY_T0000592:1;Name=ENSG00000290342;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8522572	8524565	.	+	.	source_transcript=ENST00000311828.7;source_transcript_name=ENST00000311828;source_gene=ENSG00000290342.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290342.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000311828.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000311828.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290342;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000592;transcript_name=HG003_chrY_T0000592;gene_name=ENSG00000290342;ID=intron:HG003_chrY_T0000592:1;Name=ENSG00000290342;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8524566	8524628	.	+	.	source_transcript=ENST00000311828.7;source_transcript_name=ENST00000311828;source_gene=ENSG00000290342.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290342.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000311828.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000311828.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290342;transcript_id=HG003_chrY_T0000592;gene_id=HG003_chrY_G0000162;Parent=HG003_chrY_T0000592;transcript_name=HG003_chrY_T0000592;gene_name=ENSG00000290342;ID=exon:HG003_chrY_T0000592:2;Name=ENSG00000290342;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8525744	8533176	.	-	.	source_gene_common_name=ENSG00000301122;source_gene=ENSG00000301122.1;alternative_source_transcripts=ENST00000776361.1,ENST00000776361.1;gene_id=HG003_chrY_G0000163;gene_biotype=lncRNA;gene_name=ENSG00000301122;gene_sources=liftoff;ID=HG003_chrY_G0000163;Name=ENSG00000301122
HG003_chrY	CAT	transcript	8525744	8529284	1000	-	.	source_transcript=ENST00000776361.1;source_transcript_name=ENST00000776361;source_gene=ENSG00000301122.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301122.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776361.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776361.1;transcript_score=299.923;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301122;alternative_source_transcripts=ENST00000776361.1,ENST00000776361.1;transcript_id=HG003_chrY_T0000593;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_G0000163;transcript_name=HG003_chrY_T0000593;gene_name=ENSG00000301122;ID=HG003_chrY_T0000593;Name=ENSG00000301122
HG003_chrY	CAT	exon	8525744	8526516	.	-	.	source_transcript=ENST00000776361.1;source_transcript_name=ENST00000776361;source_gene=ENSG00000301122.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301122.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776361.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776361.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301122;alternative_source_transcripts=ENST00000776361.1,ENST00000776361.1;transcript_id=HG003_chrY_T0000593;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000593;transcript_name=HG003_chrY_T0000593;gene_name=ENSG00000301122;ID=exon:HG003_chrY_T0000593:0;Name=ENSG00000301122;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8526517	8528758	.	-	.	source_transcript=ENST00000776361.1;source_transcript_name=ENST00000776361;source_gene=ENSG00000301122.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301122.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776361.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776361.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301122;alternative_source_transcripts=ENST00000776361.1,ENST00000776361.1;transcript_id=HG003_chrY_T0000593;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000593;transcript_name=HG003_chrY_T0000593;gene_name=ENSG00000301122;ID=intron:HG003_chrY_T0000593:0;Name=ENSG00000301122;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8528759	8529284	.	-	.	source_transcript=ENST00000776361.1;source_transcript_name=ENST00000776361;source_gene=ENSG00000301122.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301122.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776361.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776361.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301122;alternative_source_transcripts=ENST00000776361.1,ENST00000776361.1;transcript_id=HG003_chrY_T0000593;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000593;transcript_name=HG003_chrY_T0000593;gene_name=ENSG00000301122;ID=exon:HG003_chrY_T0000593:1;Name=ENSG00000301122;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8526150	8533176	1000	-	.	source_transcript=ENST00000776360.1;source_transcript_name=ENST00000776360;source_gene=ENSG00000301122.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301122.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776360.1;transcript_score=299.906;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301122;alternative_source_transcripts=ENST00000776360.1,ENST00000776360.1;transcript_id=HG003_chrY_T0000594;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_G0000163;transcript_name=HG003_chrY_T0000594;gene_name=ENSG00000301122;ID=HG003_chrY_T0000594;Name=ENSG00000301122
HG003_chrY	CAT	exon	8526150	8526516	.	-	.	source_transcript=ENST00000776360.1;source_transcript_name=ENST00000776360;source_gene=ENSG00000301122.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301122.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776360.1;transcript_score=299.906;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301122;alternative_source_transcripts=ENST00000776360.1,ENST00000776360.1;transcript_id=HG003_chrY_T0000594;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000594;transcript_name=HG003_chrY_T0000594;gene_name=ENSG00000301122;ID=exon:HG003_chrY_T0000594:0;Name=ENSG00000301122;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8526517	8528758	.	-	.	source_transcript=ENST00000776360.1;source_transcript_name=ENST00000776360;source_gene=ENSG00000301122.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301122.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776360.1;transcript_score=299.906;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301122;alternative_source_transcripts=ENST00000776360.1,ENST00000776360.1;transcript_id=HG003_chrY_T0000594;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000594;transcript_name=HG003_chrY_T0000594;gene_name=ENSG00000301122;ID=intron:HG003_chrY_T0000594:0;Name=ENSG00000301122;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8528759	8529336	.	-	.	source_transcript=ENST00000776360.1;source_transcript_name=ENST00000776360;source_gene=ENSG00000301122.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301122.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776360.1;transcript_score=299.906;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301122;alternative_source_transcripts=ENST00000776360.1,ENST00000776360.1;transcript_id=HG003_chrY_T0000594;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000594;transcript_name=HG003_chrY_T0000594;gene_name=ENSG00000301122;ID=exon:HG003_chrY_T0000594:1;Name=ENSG00000301122;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8529337	8533060	.	-	.	source_transcript=ENST00000776360.1;source_transcript_name=ENST00000776360;source_gene=ENSG00000301122.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301122.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776360.1;transcript_score=299.906;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301122;alternative_source_transcripts=ENST00000776360.1,ENST00000776360.1;transcript_id=HG003_chrY_T0000594;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000594;transcript_name=HG003_chrY_T0000594;gene_name=ENSG00000301122;ID=intron:HG003_chrY_T0000594:1;Name=ENSG00000301122;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8533061	8533176	.	-	.	source_transcript=ENST00000776360.1;source_transcript_name=ENST00000776360;source_gene=ENSG00000301122.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301122.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776360.1;transcript_score=299.906;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301122;alternative_source_transcripts=ENST00000776360.1,ENST00000776360.1;transcript_id=HG003_chrY_T0000594;gene_id=HG003_chrY_G0000163;Parent=HG003_chrY_T0000594;transcript_name=HG003_chrY_T0000594;gene_name=ENSG00000301122;ID=exon:HG003_chrY_T0000594:2;Name=ENSG00000301122;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8541542	8541927	.	-	.	source_gene_common_name=ENSG00000273731;source_gene=ENSG00000273731.1;alternative_source_transcripts=ENST00000614700.1,ENST00000614700.1;gene_id=HG003_chrY_G0000164;gene_biotype=processed_pseudogene;gene_name=ENSG00000273731;gene_sources=liftoff;ID=HG003_chrY_G0000164;Name=ENSG00000273731
HG003_chrY	CAT	transcript	8541542	8541927	1000	-	.	source_transcript=ENST00000614700.1;source_transcript_name=ENST00000614700;source_gene=ENSG00000273731.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000273731.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000614700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614700.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273731;alternative_source_transcripts=ENST00000614700.1,ENST00000614700.1;transcript_id=HG003_chrY_T0000595;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_G0000164;transcript_name=HG003_chrY_T0000595;gene_name=ENSG00000273731;ID=HG003_chrY_T0000595;Name=ENSG00000273731
HG003_chrY	CAT	exon	8541542	8541927	.	-	.	source_transcript=ENST00000614700.1;source_transcript_name=ENST00000614700;source_gene=ENSG00000273731.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000273731.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000614700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614700.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273731;alternative_source_transcripts=ENST00000614700.1,ENST00000614700.1;transcript_id=HG003_chrY_T0000595;gene_id=HG003_chrY_G0000164;Parent=HG003_chrY_T0000595;transcript_name=HG003_chrY_T0000595;gene_name=ENSG00000273731;ID=exon:HG003_chrY_T0000595:0;Name=ENSG00000273731;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8582233	8584577	.	-	.	source_gene_common_name=ENSG00000230025;source_gene=ENSG00000230025.1;alternative_source_transcripts=ENST00000434308.1,ENST00000434308.1;gene_id=HG003_chrY_G0000165;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000230025;gene_sources=liftoff;ID=HG003_chrY_G0000165;Name=ENSG00000230025
HG003_chrY	CAT	transcript	8582233	8584577	1000	-	.	source_transcript=ENST00000434308.1;source_transcript_name=ENST00000434308;source_gene=ENSG00000230025.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230025.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434308.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230025;alternative_source_transcripts=ENST00000434308.1,ENST00000434308.1;transcript_id=HG003_chrY_T0000596;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_G0000165;transcript_name=HG003_chrY_T0000596;gene_name=ENSG00000230025;ID=HG003_chrY_T0000596;Name=ENSG00000230025
HG003_chrY	CAT	exon	8582233	8582376	.	-	.	source_transcript=ENST00000434308.1;source_transcript_name=ENST00000434308;source_gene=ENSG00000230025.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230025.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434308.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230025;alternative_source_transcripts=ENST00000434308.1,ENST00000434308.1;transcript_id=HG003_chrY_T0000596;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_T0000596;transcript_name=HG003_chrY_T0000596;gene_name=ENSG00000230025;ID=exon:HG003_chrY_T0000596:0;Name=ENSG00000230025;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8582377	8582468	.	-	.	source_transcript=ENST00000434308.1;source_transcript_name=ENST00000434308;source_gene=ENSG00000230025.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230025.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434308.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230025;alternative_source_transcripts=ENST00000434308.1,ENST00000434308.1;transcript_id=HG003_chrY_T0000596;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_T0000596;transcript_name=HG003_chrY_T0000596;gene_name=ENSG00000230025;ID=intron:HG003_chrY_T0000596:0;Name=ENSG00000230025;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8582469	8582513	.	-	.	source_transcript=ENST00000434308.1;source_transcript_name=ENST00000434308;source_gene=ENSG00000230025.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230025.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434308.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230025;alternative_source_transcripts=ENST00000434308.1,ENST00000434308.1;transcript_id=HG003_chrY_T0000596;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_T0000596;transcript_name=HG003_chrY_T0000596;gene_name=ENSG00000230025;ID=exon:HG003_chrY_T0000596:1;Name=ENSG00000230025;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8582514	8584208	.	-	.	source_transcript=ENST00000434308.1;source_transcript_name=ENST00000434308;source_gene=ENSG00000230025.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230025.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434308.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230025;alternative_source_transcripts=ENST00000434308.1,ENST00000434308.1;transcript_id=HG003_chrY_T0000596;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_T0000596;transcript_name=HG003_chrY_T0000596;gene_name=ENSG00000230025;ID=intron:HG003_chrY_T0000596:1;Name=ENSG00000230025;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8584209	8584577	.	-	.	source_transcript=ENST00000434308.1;source_transcript_name=ENST00000434308;source_gene=ENSG00000230025.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230025.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434308.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230025;alternative_source_transcripts=ENST00000434308.1,ENST00000434308.1;transcript_id=HG003_chrY_T0000596;gene_id=HG003_chrY_G0000165;Parent=HG003_chrY_T0000596;transcript_name=HG003_chrY_T0000596;gene_name=ENSG00000230025;ID=exon:HG003_chrY_T0000596:2;Name=ENSG00000230025;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8641075	8650473	.	+	.	source_gene_common_name=OFD1P3Y;source_gene=ENSG00000231988.1;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;gene_id=HG003_chrY_G0000166;gene_biotype=unprocessed_pseudogene;gene_name=OFD1P3Y;gene_sources=liftoff;ID=HG003_chrY_G0000166;Name=OFD1P3Y
HG003_chrY	CAT	transcript	8641075	8650473	1000	+	.	source_transcript=ENST00000453312.1;source_transcript_name=OFD1P3Y-201;source_gene=ENSG00000231988.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231988.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453312.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P3Y;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_G0000166;transcript_name=HG003_chrY_T0000597;gene_name=OFD1P3Y;ID=HG003_chrY_T0000597;Name=OFD1P3Y
HG003_chrY	CAT	exon	8641075	8641211	.	+	.	source_transcript=ENST00000453312.1;source_transcript_name=OFD1P3Y-201;source_gene=ENSG00000231988.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231988.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P3Y;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000597;transcript_name=HG003_chrY_T0000597;gene_name=OFD1P3Y;ID=exon:HG003_chrY_T0000597:0;Name=OFD1P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8641212	8641535	.	+	.	source_transcript=ENST00000453312.1;source_transcript_name=OFD1P3Y-201;source_gene=ENSG00000231988.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231988.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P3Y;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000597;transcript_name=HG003_chrY_T0000597;gene_name=OFD1P3Y;ID=intron:HG003_chrY_T0000597:0;Name=OFD1P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8641536	8641710	.	+	.	source_transcript=ENST00000453312.1;source_transcript_name=OFD1P3Y-201;source_gene=ENSG00000231988.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231988.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P3Y;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000597;transcript_name=HG003_chrY_T0000597;gene_name=OFD1P3Y;ID=exon:HG003_chrY_T0000597:1;Name=OFD1P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8641711	8645157	.	+	.	source_transcript=ENST00000453312.1;source_transcript_name=OFD1P3Y-201;source_gene=ENSG00000231988.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231988.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P3Y;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000597;transcript_name=HG003_chrY_T0000597;gene_name=OFD1P3Y;ID=intron:HG003_chrY_T0000597:1;Name=OFD1P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8645158	8645273	.	+	.	source_transcript=ENST00000453312.1;source_transcript_name=OFD1P3Y-201;source_gene=ENSG00000231988.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231988.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P3Y;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000597;transcript_name=HG003_chrY_T0000597;gene_name=OFD1P3Y;ID=exon:HG003_chrY_T0000597:2;Name=OFD1P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8645274	8646941	.	+	.	source_transcript=ENST00000453312.1;source_transcript_name=OFD1P3Y-201;source_gene=ENSG00000231988.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231988.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P3Y;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000597;transcript_name=HG003_chrY_T0000597;gene_name=OFD1P3Y;ID=intron:HG003_chrY_T0000597:2;Name=OFD1P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8646942	8647015	.	+	.	source_transcript=ENST00000453312.1;source_transcript_name=OFD1P3Y-201;source_gene=ENSG00000231988.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231988.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P3Y;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000597;transcript_name=HG003_chrY_T0000597;gene_name=OFD1P3Y;ID=exon:HG003_chrY_T0000597:3;Name=OFD1P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8647016	8648160	.	+	.	source_transcript=ENST00000453312.1;source_transcript_name=OFD1P3Y-201;source_gene=ENSG00000231988.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231988.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P3Y;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000597;transcript_name=HG003_chrY_T0000597;gene_name=OFD1P3Y;ID=intron:HG003_chrY_T0000597:3;Name=OFD1P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8648161	8648252	.	+	.	source_transcript=ENST00000453312.1;source_transcript_name=OFD1P3Y-201;source_gene=ENSG00000231988.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231988.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P3Y;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000597;transcript_name=HG003_chrY_T0000597;gene_name=OFD1P3Y;ID=exon:HG003_chrY_T0000597:4;Name=OFD1P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8648253	8650284	.	+	.	source_transcript=ENST00000453312.1;source_transcript_name=OFD1P3Y-201;source_gene=ENSG00000231988.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231988.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P3Y;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000597;transcript_name=HG003_chrY_T0000597;gene_name=OFD1P3Y;ID=intron:HG003_chrY_T0000597:4;Name=OFD1P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8650285	8650473	.	+	.	source_transcript=ENST00000453312.1;source_transcript_name=OFD1P3Y-201;source_gene=ENSG00000231988.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231988.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P3Y;alternative_source_transcripts=ENST00000453312.1,ENST00000453312.1;transcript_id=HG003_chrY_T0000597;gene_id=HG003_chrY_G0000166;Parent=HG003_chrY_T0000597;transcript_name=HG003_chrY_T0000597;gene_name=OFD1P3Y;ID=exon:HG003_chrY_T0000597:5;Name=OFD1P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8726589	8728206	.	-	.	source_gene_common_name=CDY3P;source_gene=ENSG00000232235.1;alternative_source_transcripts=ENST00000454543.1,ENST00000454543.1;gene_id=HG003_chrY_G0000167;gene_biotype=processed_pseudogene;gene_name=CDY3P;gene_sources=liftoff;ID=HG003_chrY_G0000167;Name=CDY3P
HG003_chrY	CAT	transcript	8726589	8728206	1000	-	.	source_transcript=ENST00000454543.1;source_transcript_name=CDY3P-201;source_gene=ENSG00000232235.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232235.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000454543.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454543.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY3P;alternative_source_transcripts=ENST00000454543.1,ENST00000454543.1;transcript_id=HG003_chrY_T0000598;gene_id=HG003_chrY_G0000167;Parent=HG003_chrY_G0000167;transcript_name=HG003_chrY_T0000598;gene_name=CDY3P;ID=HG003_chrY_T0000598;Name=CDY3P
HG003_chrY	CAT	exon	8726589	8728206	.	-	.	source_transcript=ENST00000454543.1;source_transcript_name=CDY3P-201;source_gene=ENSG00000232235.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232235.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000454543.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454543.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY3P;alternative_source_transcripts=ENST00000454543.1,ENST00000454543.1;transcript_id=HG003_chrY_T0000598;gene_id=HG003_chrY_G0000167;Parent=HG003_chrY_T0000598;transcript_name=HG003_chrY_T0000598;gene_name=CDY3P;ID=exon:HG003_chrY_T0000598:0;Name=CDY3P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8744198	8746307	.	+	.	source_gene_common_name=USP9YP22;source_gene=ENSG00000224408.1;alternative_source_transcripts=ENST00000438971.1,ENST00000438971.1;gene_id=HG003_chrY_G0000168;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP22;gene_sources=liftoff;ID=HG003_chrY_G0000168;Name=USP9YP22
HG003_chrY	CAT	transcript	8744198	8746307	1000	+	.	source_transcript=ENST00000438971.1;source_transcript_name=USP9YP22-201;source_gene=ENSG00000224408.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224408.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000438971.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438971.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP22;alternative_source_transcripts=ENST00000438971.1,ENST00000438971.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000168;Parent=HG003_chrY_G0000168;transcript_name=HG003_chrY_T0000599;gene_name=USP9YP22;ID=HG003_chrY_T0000599;Name=USP9YP22
HG003_chrY	CAT	exon	8744198	8744289	.	+	.	source_transcript=ENST00000438971.1;source_transcript_name=USP9YP22-201;source_gene=ENSG00000224408.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224408.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000438971.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438971.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP22;alternative_source_transcripts=ENST00000438971.1,ENST00000438971.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000168;Parent=HG003_chrY_T0000599;transcript_name=HG003_chrY_T0000599;gene_name=USP9YP22;ID=exon:HG003_chrY_T0000599:0;Name=USP9YP22;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8744290	8746105	.	+	.	source_transcript=ENST00000438971.1;source_transcript_name=USP9YP22-201;source_gene=ENSG00000224408.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224408.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000438971.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438971.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP22;alternative_source_transcripts=ENST00000438971.1,ENST00000438971.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000168;Parent=HG003_chrY_T0000599;transcript_name=HG003_chrY_T0000599;gene_name=USP9YP22;ID=intron:HG003_chrY_T0000599:0;Name=USP9YP22;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8746106	8746307	.	+	.	source_transcript=ENST00000438971.1;source_transcript_name=USP9YP22-201;source_gene=ENSG00000224408.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224408.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000438971.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438971.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP22;alternative_source_transcripts=ENST00000438971.1,ENST00000438971.1;transcript_id=HG003_chrY_T0000599;gene_id=HG003_chrY_G0000168;Parent=HG003_chrY_T0000599;transcript_name=HG003_chrY_T0000599;gene_name=USP9YP22;ID=exon:HG003_chrY_T0000599:1;Name=USP9YP22;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8750133	8765123	.	-	.	source_gene_common_name=USP9YP4;source_gene=ENSG00000238154.1;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;gene_id=HG003_chrY_G0000169;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP4;gene_sources=liftoff;ID=HG003_chrY_G0000169;Name=USP9YP4
HG003_chrY	CAT	transcript	8750133	8765123	1000	-	.	source_transcript=ENST00000424401.1;source_transcript_name=USP9YP4-201;source_gene=ENSG00000238154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424401.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424401.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP4;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_G0000169;transcript_name=HG003_chrY_T0000600;gene_name=USP9YP4;ID=HG003_chrY_T0000600;Name=USP9YP4
HG003_chrY	CAT	exon	8750133	8750256	.	-	.	source_transcript=ENST00000424401.1;source_transcript_name=USP9YP4-201;source_gene=ENSG00000238154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424401.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424401.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP4;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000600;transcript_name=HG003_chrY_T0000600;gene_name=USP9YP4;ID=exon:HG003_chrY_T0000600:0;Name=USP9YP4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8750257	8750691	.	-	.	source_transcript=ENST00000424401.1;source_transcript_name=USP9YP4-201;source_gene=ENSG00000238154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424401.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424401.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP4;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000600;transcript_name=HG003_chrY_T0000600;gene_name=USP9YP4;ID=intron:HG003_chrY_T0000600:0;Name=USP9YP4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8750692	8751576	.	-	.	source_transcript=ENST00000424401.1;source_transcript_name=USP9YP4-201;source_gene=ENSG00000238154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424401.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424401.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP4;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000600;transcript_name=HG003_chrY_T0000600;gene_name=USP9YP4;ID=exon:HG003_chrY_T0000600:1;Name=USP9YP4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8751577	8754095	.	-	.	source_transcript=ENST00000424401.1;source_transcript_name=USP9YP4-201;source_gene=ENSG00000238154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424401.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424401.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP4;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000600;transcript_name=HG003_chrY_T0000600;gene_name=USP9YP4;ID=intron:HG003_chrY_T0000600:1;Name=USP9YP4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8754096	8754219	.	-	.	source_transcript=ENST00000424401.1;source_transcript_name=USP9YP4-201;source_gene=ENSG00000238154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424401.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424401.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP4;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000600;transcript_name=HG003_chrY_T0000600;gene_name=USP9YP4;ID=exon:HG003_chrY_T0000600:2;Name=USP9YP4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8754220	8759595	.	-	.	source_transcript=ENST00000424401.1;source_transcript_name=USP9YP4-201;source_gene=ENSG00000238154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424401.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424401.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP4;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000600;transcript_name=HG003_chrY_T0000600;gene_name=USP9YP4;ID=intron:HG003_chrY_T0000600:2;Name=USP9YP4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8759596	8759785	.	-	.	source_transcript=ENST00000424401.1;source_transcript_name=USP9YP4-201;source_gene=ENSG00000238154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424401.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424401.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP4;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000600;transcript_name=HG003_chrY_T0000600;gene_name=USP9YP4;ID=exon:HG003_chrY_T0000600:3;Name=USP9YP4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8759786	8761897	.	-	.	source_transcript=ENST00000424401.1;source_transcript_name=USP9YP4-201;source_gene=ENSG00000238154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424401.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424401.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP4;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000600;transcript_name=HG003_chrY_T0000600;gene_name=USP9YP4;ID=intron:HG003_chrY_T0000600:3;Name=USP9YP4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8761898	8762104	.	-	.	source_transcript=ENST00000424401.1;source_transcript_name=USP9YP4-201;source_gene=ENSG00000238154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424401.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424401.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP4;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000600;transcript_name=HG003_chrY_T0000600;gene_name=USP9YP4;ID=exon:HG003_chrY_T0000600:4;Name=USP9YP4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8762105	8764908	.	-	.	source_transcript=ENST00000424401.1;source_transcript_name=USP9YP4-201;source_gene=ENSG00000238154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424401.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424401.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP4;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000600;transcript_name=HG003_chrY_T0000600;gene_name=USP9YP4;ID=intron:HG003_chrY_T0000600:4;Name=USP9YP4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8764909	8765123	.	-	.	source_transcript=ENST00000424401.1;source_transcript_name=USP9YP4-201;source_gene=ENSG00000238154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424401.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424401.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP4;alternative_source_transcripts=ENST00000424401.1,ENST00000424401.1;transcript_id=HG003_chrY_T0000600;gene_id=HG003_chrY_G0000169;Parent=HG003_chrY_T0000600;transcript_name=HG003_chrY_T0000600;gene_name=USP9YP4;ID=exon:HG003_chrY_T0000600:5;Name=USP9YP4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8791433	8791765	.	+	.	source_gene_common_name=ELOCP4;source_gene=ENSG00000232924.1;alternative_source_transcripts=ENST00000420090.1,ENST00000420090.1;gene_id=HG003_chrY_G0000170;gene_biotype=processed_pseudogene;gene_name=ELOCP4;gene_sources=liftoff;ID=HG003_chrY_G0000170;Name=ELOCP4
HG003_chrY	CAT	transcript	8791433	8791765	1000	+	.	source_transcript=ENST00000420090.1;source_transcript_name=ELOCP4-201;source_gene=ENSG00000232924.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232924.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420090.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP4;alternative_source_transcripts=ENST00000420090.1,ENST00000420090.1;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000170;Parent=HG003_chrY_G0000170;transcript_name=HG003_chrY_T0000601;gene_name=ELOCP4;ID=HG003_chrY_T0000601;Name=ELOCP4
HG003_chrY	CAT	exon	8791433	8791765	.	+	.	source_transcript=ENST00000420090.1;source_transcript_name=ELOCP4-201;source_gene=ENSG00000232924.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232924.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420090.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP4;alternative_source_transcripts=ENST00000420090.1,ENST00000420090.1;transcript_id=HG003_chrY_T0000601;gene_id=HG003_chrY_G0000170;Parent=HG003_chrY_T0000601;transcript_name=HG003_chrY_T0000601;gene_name=ELOCP4;ID=exon:HG003_chrY_T0000601:0;Name=ELOCP4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8852766	8872036	.	+	.	source_gene_common_name=ENSG00000299745;source_gene=ENSG00000299745.1;alternative_source_transcripts=ENST00000766005.1,ENST00000766005.1;gene_id=HG003_chrY_G0000171;gene_biotype=lncRNA;gene_name=ENSG00000299745;gene_sources=liftoff;ID=HG003_chrY_G0000171;Name=ENSG00000299745
HG003_chrY	CAT	transcript	8852766	8872036	1000	+	.	source_transcript=ENST00000766005.1;source_transcript_name=ENST00000766005;source_gene=ENSG00000299745.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299745.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766005.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299745;alternative_source_transcripts=ENST00000766005.1,ENST00000766005.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_G0000171;transcript_name=HG003_chrY_T0000602;gene_name=ENSG00000299745;ID=HG003_chrY_T0000602;Name=ENSG00000299745
HG003_chrY	CAT	exon	8852766	8853078	.	+	.	source_transcript=ENST00000766005.1;source_transcript_name=ENST00000766005;source_gene=ENSG00000299745.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299745.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766005.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299745;alternative_source_transcripts=ENST00000766005.1,ENST00000766005.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000602;transcript_name=HG003_chrY_T0000602;gene_name=ENSG00000299745;ID=exon:HG003_chrY_T0000602:0;Name=ENSG00000299745;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8853079	8854323	.	+	.	source_transcript=ENST00000766005.1;source_transcript_name=ENST00000766005;source_gene=ENSG00000299745.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299745.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766005.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299745;alternative_source_transcripts=ENST00000766005.1,ENST00000766005.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000602;transcript_name=HG003_chrY_T0000602;gene_name=ENSG00000299745;ID=intron:HG003_chrY_T0000602:0;Name=ENSG00000299745;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8854324	8854398	.	+	.	source_transcript=ENST00000766005.1;source_transcript_name=ENST00000766005;source_gene=ENSG00000299745.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299745.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766005.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299745;alternative_source_transcripts=ENST00000766005.1,ENST00000766005.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000602;transcript_name=HG003_chrY_T0000602;gene_name=ENSG00000299745;ID=exon:HG003_chrY_T0000602:1;Name=ENSG00000299745;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8854399	8865066	.	+	.	source_transcript=ENST00000766005.1;source_transcript_name=ENST00000766005;source_gene=ENSG00000299745.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299745.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766005.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299745;alternative_source_transcripts=ENST00000766005.1,ENST00000766005.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000602;transcript_name=HG003_chrY_T0000602;gene_name=ENSG00000299745;ID=intron:HG003_chrY_T0000602:1;Name=ENSG00000299745;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8865067	8865179	.	+	.	source_transcript=ENST00000766005.1;source_transcript_name=ENST00000766005;source_gene=ENSG00000299745.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299745.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766005.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299745;alternative_source_transcripts=ENST00000766005.1,ENST00000766005.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000602;transcript_name=HG003_chrY_T0000602;gene_name=ENSG00000299745;ID=exon:HG003_chrY_T0000602:2;Name=ENSG00000299745;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8865180	8868768	.	+	.	source_transcript=ENST00000766005.1;source_transcript_name=ENST00000766005;source_gene=ENSG00000299745.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299745.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766005.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299745;alternative_source_transcripts=ENST00000766005.1,ENST00000766005.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000602;transcript_name=HG003_chrY_T0000602;gene_name=ENSG00000299745;ID=intron:HG003_chrY_T0000602:2;Name=ENSG00000299745;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8868769	8868936	.	+	.	source_transcript=ENST00000766005.1;source_transcript_name=ENST00000766005;source_gene=ENSG00000299745.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299745.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766005.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299745;alternative_source_transcripts=ENST00000766005.1,ENST00000766005.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000602;transcript_name=HG003_chrY_T0000602;gene_name=ENSG00000299745;ID=exon:HG003_chrY_T0000602:3;Name=ENSG00000299745;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8868937	8871669	.	+	.	source_transcript=ENST00000766005.1;source_transcript_name=ENST00000766005;source_gene=ENSG00000299745.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299745.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766005.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299745;alternative_source_transcripts=ENST00000766005.1,ENST00000766005.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000602;transcript_name=HG003_chrY_T0000602;gene_name=ENSG00000299745;ID=intron:HG003_chrY_T0000602:3;Name=ENSG00000299745;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8871670	8872036	.	+	.	source_transcript=ENST00000766005.1;source_transcript_name=ENST00000766005;source_gene=ENSG00000299745.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299745.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766005.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299745;alternative_source_transcripts=ENST00000766005.1,ENST00000766005.1;transcript_id=HG003_chrY_T0000602;gene_id=HG003_chrY_G0000171;Parent=HG003_chrY_T0000602;transcript_name=HG003_chrY_T0000602;gene_name=ENSG00000299745;ID=exon:HG003_chrY_T0000602:4;Name=ENSG00000299745;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8869141	8885409	.	-	.	source_gene_common_name=ENSG00000299768;source_gene=ENSG00000299768.1;gene_id=HG003_chrY_G0000172;gene_biotype=lncRNA;gene_name=ENSG00000299768;gene_sources=liftoff;ID=HG003_chrY_G0000172;Name=ENSG00000299768
HG003_chrY	CAT	transcript	8869141	8885409	1000	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_G0000172;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=HG003_chrY_T0000603;Name=ENSG00000299768
HG003_chrY	CAT	exon	8869141	8869358	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000603:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8869359	8872365	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000603:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8872366	8872454	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000603:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8872455	8874233	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000603:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8874234	8874344	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000603:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8874345	8875299	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000603:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8875300	8875414	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000603:3;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8875415	8877462	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000603:3;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8877463	8877615	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000603:4;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8877616	8879515	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000603:4;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8879516	8879693	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000603:5;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8879694	8882708	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000603:5;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8882709	8882812	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000603:6;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8882813	8883286	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000603:6;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8883287	8883399	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000603:7;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8883400	8885254	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000603:7;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8885255	8885409	.	-	.	source_transcript=ENST00000766240.1;source_transcript_name=ENST00000766240;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766240.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766240.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000603;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000603;transcript_name=HG003_chrY_T0000603;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000603:8;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8869143	8885329	1000	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_G0000172;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=HG003_chrY_T0000604;Name=ENSG00000299768
HG003_chrY	CAT	exon	8869143	8869358	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000604:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8869359	8872365	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000604:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8872366	8872454	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000604:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8872455	8872539	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000604:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8872540	8872650	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000604:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8872651	8874233	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000604:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8874234	8874344	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000604:3;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8874345	8875299	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000604:3;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8875300	8875414	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000604:4;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8875415	8877462	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000604:4;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8877463	8877615	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000604:5;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8877616	8879515	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000604:5;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8879516	8879693	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000604:6;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8879694	8882708	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000604:6;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8882709	8882812	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000604:7;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8882813	8883286	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000604:7;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8883287	8883399	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000604:8;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8883400	8885200	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000604:8;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8885201	8885329	.	-	.	source_transcript=ENST00000766243.1;source_transcript_name=ENST00000766243;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766243.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766243.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000604;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000604;transcript_name=HG003_chrY_T0000604;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000604:9;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8869143	8885367	1000	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_G0000172;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=HG003_chrY_T0000605;Name=ENSG00000299768
HG003_chrY	CAT	exon	8869143	8869358	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000605:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8869359	8872365	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000605:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8872366	8872454	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000605:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8872455	8872539	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000605:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8872540	8872650	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000605:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8872651	8874233	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000605:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8874234	8874344	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000605:3;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8874345	8875299	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000605:3;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8875300	8875414	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000605:4;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8875415	8877462	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000605:4;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8877463	8877615	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000605:5;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8877616	8879515	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000605:5;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8879516	8879693	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000605:6;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8879694	8882708	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000605:6;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8882709	8882812	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000605:7;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8882813	8883286	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000605:7;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8883287	8883399	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000605:8;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8883400	8885254	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000605:8;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8885255	8885367	.	-	.	source_transcript=ENST00000766242.1;source_transcript_name=ENST00000766242;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766242.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766242.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000605;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000605;transcript_name=HG003_chrY_T0000605;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000605:9;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8869143	8885367	1000	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_G0000172;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=HG003_chrY_T0000606;Name=ENSG00000299768
HG003_chrY	CAT	exon	8869143	8869358	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000606:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8869359	8872365	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000606:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8872366	8872454	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000606:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8872455	8874233	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000606:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8874234	8874344	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000606:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8874345	8877462	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000606:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8877463	8877615	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000606:3;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8877616	8879515	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000606:3;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8879516	8879693	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000606:4;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8879694	8882708	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000606:4;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8882709	8882812	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000606:5;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8882813	8883286	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000606:5;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8883287	8883399	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000606:6;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8883400	8885254	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000606:6;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8885255	8885367	.	-	.	source_transcript=ENST00000766241.1;source_transcript_name=ENST00000766241;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766241.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766241.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000606;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000606;transcript_name=HG003_chrY_T0000606;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000606:7;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8873985	8885392	1000	-	.	source_transcript=ENST00000766244.1;source_transcript_name=ENST00000766244;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766244.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_G0000172;transcript_name=HG003_chrY_T0000608;gene_name=ENSG00000299768;ID=HG003_chrY_T0000608;Name=ENSG00000299768
HG003_chrY	CAT	exon	8873985	8875414	.	-	.	source_transcript=ENST00000766244.1;source_transcript_name=ENST00000766244;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000608;transcript_name=HG003_chrY_T0000608;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000608:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8875415	8877462	.	-	.	source_transcript=ENST00000766244.1;source_transcript_name=ENST00000766244;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000608;transcript_name=HG003_chrY_T0000608;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000608:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8877463	8877615	.	-	.	source_transcript=ENST00000766244.1;source_transcript_name=ENST00000766244;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000608;transcript_name=HG003_chrY_T0000608;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000608:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8877616	8879515	.	-	.	source_transcript=ENST00000766244.1;source_transcript_name=ENST00000766244;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000608;transcript_name=HG003_chrY_T0000608;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000608:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8879516	8879693	.	-	.	source_transcript=ENST00000766244.1;source_transcript_name=ENST00000766244;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000608;transcript_name=HG003_chrY_T0000608;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000608:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8879694	8882708	.	-	.	source_transcript=ENST00000766244.1;source_transcript_name=ENST00000766244;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000608;transcript_name=HG003_chrY_T0000608;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000608:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8882709	8882812	.	-	.	source_transcript=ENST00000766244.1;source_transcript_name=ENST00000766244;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000608;transcript_name=HG003_chrY_T0000608;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000608:3;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8882813	8883286	.	-	.	source_transcript=ENST00000766244.1;source_transcript_name=ENST00000766244;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000608;transcript_name=HG003_chrY_T0000608;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000608:3;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8883287	8883399	.	-	.	source_transcript=ENST00000766244.1;source_transcript_name=ENST00000766244;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000608;transcript_name=HG003_chrY_T0000608;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000608:4;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8883400	8885254	.	-	.	source_transcript=ENST00000766244.1;source_transcript_name=ENST00000766244;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000608;transcript_name=HG003_chrY_T0000608;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000608:4;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8885255	8885392	.	-	.	source_transcript=ENST00000766244.1;source_transcript_name=ENST00000766244;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766244.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766244.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000608;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000608;transcript_name=HG003_chrY_T0000608;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000608:5;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8878778	8885392	1000	-	.	source_transcript=ENST00000766245.1;source_transcript_name=ENST00000766245;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766245.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_G0000172;transcript_name=HG003_chrY_T0000609;gene_name=ENSG00000299768;ID=HG003_chrY_T0000609;Name=ENSG00000299768
HG003_chrY	CAT	exon	8878778	8879693	.	-	.	source_transcript=ENST00000766245.1;source_transcript_name=ENST00000766245;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000609;transcript_name=HG003_chrY_T0000609;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000609:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8879694	8882708	.	-	.	source_transcript=ENST00000766245.1;source_transcript_name=ENST00000766245;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000609;transcript_name=HG003_chrY_T0000609;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000609:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8882709	8882812	.	-	.	source_transcript=ENST00000766245.1;source_transcript_name=ENST00000766245;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000609;transcript_name=HG003_chrY_T0000609;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000609:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8882813	8883286	.	-	.	source_transcript=ENST00000766245.1;source_transcript_name=ENST00000766245;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000609;transcript_name=HG003_chrY_T0000609;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000609:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8883287	8883399	.	-	.	source_transcript=ENST00000766245.1;source_transcript_name=ENST00000766245;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000609;transcript_name=HG003_chrY_T0000609;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000609:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8883400	8885254	.	-	.	source_transcript=ENST00000766245.1;source_transcript_name=ENST00000766245;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000609;transcript_name=HG003_chrY_T0000609;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000609:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8885255	8885392	.	-	.	source_transcript=ENST00000766245.1;source_transcript_name=ENST00000766245;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766245.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766245.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000609;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000609;transcript_name=HG003_chrY_T0000609;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000609:3;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8882197	8885366	1000	-	.	source_transcript=ENST00000766246.1;source_transcript_name=ENST00000766246;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766246.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766246.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_G0000172;transcript_name=HG003_chrY_T0000610;gene_name=ENSG00000299768;ID=HG003_chrY_T0000610;Name=ENSG00000299768
HG003_chrY	CAT	exon	8882197	8882812	.	-	.	source_transcript=ENST00000766246.1;source_transcript_name=ENST00000766246;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766246.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000610;transcript_name=HG003_chrY_T0000610;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000610:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8882813	8883286	.	-	.	source_transcript=ENST00000766246.1;source_transcript_name=ENST00000766246;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766246.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000610;transcript_name=HG003_chrY_T0000610;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000610:0;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8883287	8883399	.	-	.	source_transcript=ENST00000766246.1;source_transcript_name=ENST00000766246;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766246.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000610;transcript_name=HG003_chrY_T0000610;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000610:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8883400	8885254	.	-	.	source_transcript=ENST00000766246.1;source_transcript_name=ENST00000766246;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766246.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000610;transcript_name=HG003_chrY_T0000610;gene_name=ENSG00000299768;ID=intron:HG003_chrY_T0000610:1;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8885255	8885366	.	-	.	source_transcript=ENST00000766246.1;source_transcript_name=ENST00000766246;source_gene=ENSG00000299768.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299768.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766246.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766246.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299768;transcript_id=HG003_chrY_T0000610;gene_id=HG003_chrY_G0000172;Parent=HG003_chrY_T0000610;transcript_name=HG003_chrY_T0000610;gene_name=ENSG00000299768;ID=exon:HG003_chrY_T0000610:2;Name=ENSG00000299768;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8871654	8883395	.	-	.	source_gene_common_name=RBMY1A3P;source_gene=ENSG00000197038.6;gene_id=HG003_chrY_G0000173;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RBMY1A3P;gene_sources=liftoff;ID=HG003_chrY_G0000173;Name=RBMY1A3P
HG003_chrY	CAT	transcript	8871654	8883395	1000	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_G0000173;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=HG003_chrY_T0000607;Name=RBMY1A3P
HG003_chrY	CAT	exon	8871654	8871955	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000607:0;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8871956	8872539	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=intron:HG003_chrY_T0000607:0;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8872540	8872650	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000607:1;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8872651	8873148	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=intron:HG003_chrY_T0000607:1;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8873149	8873259	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000607:2;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8873260	8873696	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=intron:HG003_chrY_T0000607:2;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8873697	8873806	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000607:3;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8873807	8874233	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=intron:HG003_chrY_T0000607:3;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8874234	8874344	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000607:4;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8874345	8875299	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=intron:HG003_chrY_T0000607:4;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8875300	8875414	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000607:5;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8875415	8877462	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=intron:HG003_chrY_T0000607:5;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8877463	8877615	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000607:6;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8877616	8879515	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=intron:HG003_chrY_T0000607:6;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8879516	8879693	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000607:7;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8879694	8882708	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=intron:HG003_chrY_T0000607:7;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8882709	8882812	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000607:8;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8882813	8883286	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=intron:HG003_chrY_T0000607:8;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8883287	8883395	.	-	.	source_transcript=ENST00000382670.3;source_transcript_name=RBMY1A3P-201;source_gene=ENSG00000197038.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197038.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382670.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382670.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A3P;transcript_id=HG003_chrY_T0000607;gene_id=HG003_chrY_G0000173;Parent=HG003_chrY_T0000607;transcript_name=HG003_chrY_T0000607;gene_name=RBMY1A3P;ID=exon:HG003_chrY_T0000607:9;Name=RBMY1A3P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8886325	8886573	.	+	.	source_gene_common_name=ENSG00000275310;source_gene=ENSG00000275310.1;alternative_source_transcripts=ENST00000610661.1,ENST00000610661.1;gene_id=HG003_chrY_G0000174;gene_biotype=processed_pseudogene;gene_name=ENSG00000275310;gene_sources=liftoff;ID=HG003_chrY_G0000174;Name=ENSG00000275310
HG003_chrY	CAT	transcript	8886325	8886573	1000	+	.	source_transcript=ENST00000610661.1;source_transcript_name=ENST00000610661;source_gene=ENSG00000275310.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000275310.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000610661.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000610661.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275310;alternative_source_transcripts=ENST00000610661.1,ENST00000610661.1;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000174;Parent=HG003_chrY_G0000174;transcript_name=HG003_chrY_T0000611;gene_name=ENSG00000275310;ID=HG003_chrY_T0000611;Name=ENSG00000275310
HG003_chrY	CAT	exon	8886325	8886573	.	+	.	source_transcript=ENST00000610661.1;source_transcript_name=ENST00000610661;source_gene=ENSG00000275310.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000275310.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000610661.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000610661.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275310;alternative_source_transcripts=ENST00000610661.1,ENST00000610661.1;transcript_id=HG003_chrY_T0000611;gene_id=HG003_chrY_G0000174;Parent=HG003_chrY_T0000611;transcript_name=HG003_chrY_T0000611;gene_name=ENSG00000275310;ID=exon:HG003_chrY_T0000611:0;Name=ENSG00000275310;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8890406	8895358	.	-	.	source_gene_common_name=TTTY20;source_gene=ENSG00000232808.1;alternative_source_transcripts=ENST00000434487.1,ENST00000434487.1;gene_id=HG003_chrY_G0000175;gene_biotype=lncRNA;gene_name=TTTY20;gene_sources=liftoff;ID=HG003_chrY_G0000175;Name=TTTY20
HG003_chrY	CAT	transcript	8890406	8895358	1000	-	.	source_transcript=ENST00000434487.1;source_transcript_name=TTTY20-201;source_gene=ENSG00000232808.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000232808.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000434487.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434487.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY20;alternative_source_transcripts=ENST00000434487.1,ENST00000434487.1;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000175;Parent=HG003_chrY_G0000175;transcript_name=HG003_chrY_T0000612;gene_name=TTTY20;ID=HG003_chrY_T0000612;Name=TTTY20
HG003_chrY	CAT	exon	8890406	8890582	.	-	.	source_transcript=ENST00000434487.1;source_transcript_name=TTTY20-201;source_gene=ENSG00000232808.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000232808.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000434487.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434487.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY20;alternative_source_transcripts=ENST00000434487.1,ENST00000434487.1;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000175;Parent=HG003_chrY_T0000612;transcript_name=HG003_chrY_T0000612;gene_name=TTTY20;ID=exon:HG003_chrY_T0000612:0;Name=TTTY20;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8890583	8895276	.	-	.	source_transcript=ENST00000434487.1;source_transcript_name=TTTY20-201;source_gene=ENSG00000232808.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000232808.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000434487.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434487.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY20;alternative_source_transcripts=ENST00000434487.1,ENST00000434487.1;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000175;Parent=HG003_chrY_T0000612;transcript_name=HG003_chrY_T0000612;gene_name=TTTY20;ID=intron:HG003_chrY_T0000612:0;Name=TTTY20;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8895277	8895358	.	-	.	source_transcript=ENST00000434487.1;source_transcript_name=TTTY20-201;source_gene=ENSG00000232808.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000232808.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000434487.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434487.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY20;alternative_source_transcripts=ENST00000434487.1,ENST00000434487.1;transcript_id=HG003_chrY_T0000612;gene_id=HG003_chrY_G0000175;Parent=HG003_chrY_T0000612;transcript_name=HG003_chrY_T0000612;gene_name=TTTY20;ID=exon:HG003_chrY_T0000612:1;Name=TTTY20;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8897990	8900786	.	+	.	source_gene_common_name=TSPY8;source_gene=ENSG00000229549.9;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;gene_id=HG003_chrY_G0000176;gene_biotype=protein_coding;gene_name=TSPY8;gene_sources=liftoff;ID=HG003_chrY_G0000176;Name=TSPY8
HG003_chrY	CAT	transcript	8897990	8900786	100	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_G0000176;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=HG003_chrY_T0000613;Name=TSPY8
HG003_chrY	CAT	exon	8897990	8898521	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=exon:HG003_chrY_T0000613:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8898036	8898521	.	+	0	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000613:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8898036	8898038	.	+	0	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000613;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8898522	8899128	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=intron:HG003_chrY_T0000613:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899129	8899206	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=exon:HG003_chrY_T0000613:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899129	8899206	.	+	0	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000613:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899207	8899334	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=intron:HG003_chrY_T0000613:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899335	8899446	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=exon:HG003_chrY_T0000613:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899335	8899446	.	+	0	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000613:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899447	8899547	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=intron:HG003_chrY_T0000613:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899548	8899693	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=exon:HG003_chrY_T0000613:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899548	8899693	.	+	2	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000613:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899694	8899799	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=intron:HG003_chrY_T0000613:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899800	8899881	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=exon:HG003_chrY_T0000613:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899800	8899881	.	+	0	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000613:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899882	8900575	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=intron:HG003_chrY_T0000613:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8900576	8900786	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=exon:HG003_chrY_T0000613:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8900576	8900598	.	+	2	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000613:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8900596	8900598	.	+	0	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000426950.6,ENST00000426950.6;transcript_id=HG003_chrY_T0000613;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000613;transcript_name=HG003_chrY_T0000613;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000613;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8897990	8900785	100	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_G0000176;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=HG003_chrY_T0000614;Name=TSPY8
HG003_chrY	CAT	exon	8897990	8898122	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=exon:HG003_chrY_T0000614:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8898036	8898122	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000614:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8898036	8898038	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000614;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8898123	8898383	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=intron:HG003_chrY_T0000614:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8898384	8898521	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=exon:HG003_chrY_T0000614:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8898384	8898521	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000614:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8898522	8899128	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=intron:HG003_chrY_T0000614:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899129	8899206	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=exon:HG003_chrY_T0000614:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899129	8899206	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000614:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899207	8899334	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=intron:HG003_chrY_T0000614:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899335	8899446	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=exon:HG003_chrY_T0000614:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899335	8899446	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000614:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899447	8899547	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=intron:HG003_chrY_T0000614:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899548	8899693	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=exon:HG003_chrY_T0000614:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899548	8899693	.	+	2	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000614:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899694	8899788	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=intron:HG003_chrY_T0000614:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899789	8899881	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=exon:HG003_chrY_T0000614:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899789	8899851	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000614:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8899849	8899851	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000614;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899882	8900575	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=intron:HG003_chrY_T0000614:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8900576	8900785	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000614;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000614;transcript_name=HG003_chrY_T0000614;gene_name=TSPY8;ID=exon:HG003_chrY_T0000614:6;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8898036	8900785	100	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_G0000176;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=HG003_chrY_T0000615;Name=TSPY8
HG003_chrY	CAT	exon	8898036	8898521	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=exon:HG003_chrY_T0000615:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8898036	8898521	.	+	0	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000615:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8898036	8898038	.	+	0	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000615;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8898522	8899128	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=intron:HG003_chrY_T0000615:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899129	8899206	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=exon:HG003_chrY_T0000615:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899129	8899206	.	+	0	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000615:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899207	8899334	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=intron:HG003_chrY_T0000615:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899335	8899446	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=exon:HG003_chrY_T0000615:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899335	8899446	.	+	0	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000615:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899447	8899547	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=intron:HG003_chrY_T0000615:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899548	8899693	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=exon:HG003_chrY_T0000615:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899548	8899693	.	+	2	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000615:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899694	8899788	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=intron:HG003_chrY_T0000615:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899789	8899881	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=exon:HG003_chrY_T0000615:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8899789	8899851	.	+	0	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000615:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8899849	8899851	.	+	0	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000615;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899882	8900575	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=intron:HG003_chrY_T0000615:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8900576	8900785	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383008.1,ENST00000383008.1;transcript_id=HG003_chrY_T0000615;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000615;transcript_name=HG003_chrY_T0000615;gene_name=TSPY8;ID=exon:HG003_chrY_T0000615:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8898036	8900792	1000	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000466036.1,ENST00000466036.1;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_G0000176;transcript_name=HG003_chrY_T0000616;gene_name=TSPY8;ID=HG003_chrY_T0000616;Name=TSPY8
HG003_chrY	CAT	exon	8898036	8898521	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000466036.1,ENST00000466036.1;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000616;transcript_name=HG003_chrY_T0000616;gene_name=TSPY8;ID=exon:HG003_chrY_T0000616:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8898522	8899128	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000466036.1,ENST00000466036.1;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000616;transcript_name=HG003_chrY_T0000616;gene_name=TSPY8;ID=intron:HG003_chrY_T0000616:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899129	8899206	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000466036.1,ENST00000466036.1;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000616;transcript_name=HG003_chrY_T0000616;gene_name=TSPY8;ID=exon:HG003_chrY_T0000616:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899207	8899334	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000466036.1,ENST00000466036.1;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000616;transcript_name=HG003_chrY_T0000616;gene_name=TSPY8;ID=intron:HG003_chrY_T0000616:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899335	8899881	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000466036.1,ENST00000466036.1;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000616;transcript_name=HG003_chrY_T0000616;gene_name=TSPY8;ID=exon:HG003_chrY_T0000616:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899882	8900008	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000466036.1,ENST00000466036.1;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000616;transcript_name=HG003_chrY_T0000616;gene_name=TSPY8;ID=intron:HG003_chrY_T0000616:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8900009	8900792	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000466036.1,ENST00000466036.1;transcript_id=HG003_chrY_T0000616;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000616;transcript_name=HG003_chrY_T0000616;gene_name=TSPY8;ID=exon:HG003_chrY_T0000616:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8899396	8900777	1000	+	.	source_transcript=ENST00000436159.2;source_transcript_name=TSPY8-204;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000436159.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000436159.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_G0000176;transcript_name=HG003_chrY_T0000617;gene_name=TSPY8;ID=HG003_chrY_T0000617;Name=TSPY8
HG003_chrY	CAT	exon	8899396	8899693	.	+	.	source_transcript=ENST00000436159.2;source_transcript_name=TSPY8-204;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000436159.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000436159.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000617;transcript_name=HG003_chrY_T0000617;gene_name=TSPY8;ID=exon:HG003_chrY_T0000617:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899694	8899799	.	+	.	source_transcript=ENST00000436159.2;source_transcript_name=TSPY8-204;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000436159.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000436159.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000617;transcript_name=HG003_chrY_T0000617;gene_name=TSPY8;ID=intron:HG003_chrY_T0000617:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8899800	8899881	.	+	.	source_transcript=ENST00000436159.2;source_transcript_name=TSPY8-204;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000436159.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000436159.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000617;transcript_name=HG003_chrY_T0000617;gene_name=TSPY8;ID=exon:HG003_chrY_T0000617:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8899882	8900575	.	+	.	source_transcript=ENST00000436159.2;source_transcript_name=TSPY8-204;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000436159.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000436159.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000617;transcript_name=HG003_chrY_T0000617;gene_name=TSPY8;ID=intron:HG003_chrY_T0000617:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8900576	8900777	.	+	.	source_transcript=ENST00000436159.2;source_transcript_name=TSPY8-204;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000436159.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000436159.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;transcript_id=HG003_chrY_T0000617;gene_id=HG003_chrY_G0000176;Parent=HG003_chrY_T0000617;transcript_name=HG003_chrY_T0000617;gene_name=TSPY8;ID=exon:HG003_chrY_T0000617:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8907987	8915691	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000290448.1_8;gene_id=HG003_chrY_G0000177;gene_biotype=lncRNA;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000177;Name=FAM197Y9
HG003_chrY	CAT	transcript	8907987	8915691	1000	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_G0000177;transcript_name=HG003_chrY_T0000618;gene_name=FAM197Y9;ID=HG003_chrY_T0000618;Name=FAM197Y9
HG003_chrY	CAT	exon	8907987	8910114	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000618;transcript_name=HG003_chrY_T0000618;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000618:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8910115	8913664	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000618;transcript_name=HG003_chrY_T0000618;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000618:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8913665	8913750	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000618;transcript_name=HG003_chrY_T0000618;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000618:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8913751	8915571	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000618;transcript_name=HG003_chrY_T0000618;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000618:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8915572	8915691	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000618;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000618;transcript_name=HG003_chrY_T0000618;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000618:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8910055	8915673	1000	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_G0000177;transcript_name=HG003_chrY_T0000619;gene_name=FAM197Y9;ID=HG003_chrY_T0000619;Name=FAM197Y9
HG003_chrY	CAT	exon	8910055	8910114	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000619;transcript_name=HG003_chrY_T0000619;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000619:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8910115	8913664	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000619;transcript_name=HG003_chrY_T0000619;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000619:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8913665	8913823	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000619;transcript_name=HG003_chrY_T0000619;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000619:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8913824	8915339	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000619;transcript_name=HG003_chrY_T0000619;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000619:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8915340	8915485	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000619;transcript_name=HG003_chrY_T0000619;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000619:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8915486	8915571	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000619;transcript_name=HG003_chrY_T0000619;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000619:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8915572	8915673	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000619;gene_id=HG003_chrY_G0000177;Parent=HG003_chrY_T0000619;transcript_name=HG003_chrY_T0000619;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000619:3;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8915340	8917333	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000234830.9_1;gene_id=HG003_chrY_G0000178;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000178;Name=FAM197Y9
HG003_chrY	CAT	transcript	8915340	8917333	1000	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000178;Parent=HG003_chrY_G0000178;transcript_name=HG003_chrY_T0000620;gene_name=FAM197Y9;ID=HG003_chrY_T0000620;Name=FAM197Y9
HG003_chrY	CAT	exon	8915340	8915485	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000178;Parent=HG003_chrY_T0000620;transcript_name=HG003_chrY_T0000620;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000620:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8915486	8915597	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000178;Parent=HG003_chrY_T0000620;transcript_name=HG003_chrY_T0000620;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000620:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8915598	8915681	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000178;Parent=HG003_chrY_T0000620;transcript_name=HG003_chrY_T0000620;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000620:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8915682	8917023	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000178;Parent=HG003_chrY_T0000620;transcript_name=HG003_chrY_T0000620;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000620:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8917024	8917333	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000620;gene_id=HG003_chrY_G0000178;Parent=HG003_chrY_T0000620;transcript_name=HG003_chrY_T0000620;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000620:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8918286	8921082	.	+	.	source_gene_common_name=TSPY8;source_gene=ENSG00000229549.9;alternative_source_transcripts=ENST00000287721.13;gene_id=HG003_chrY_G0000179;gene_biotype=protein_coding;gene_name=TSPY8;gene_sources=liftoff;ID=HG003_chrY_G0000179;Name=TSPY8
HG003_chrY	CAT	transcript	8918286	8921082	100	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_G0000179;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=HG003_chrY_T0000621;Name=TSPY8
HG003_chrY	CAT	exon	8918286	8918817	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=exon:HG003_chrY_T0000621:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8918332	8918817	.	+	0	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000621:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8918332	8918334	.	+	0	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000621;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8918818	8919424	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=intron:HG003_chrY_T0000621:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919425	8919502	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=exon:HG003_chrY_T0000621:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919425	8919502	.	+	0	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000621:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919503	8919630	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=intron:HG003_chrY_T0000621:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919631	8919742	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=exon:HG003_chrY_T0000621:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919631	8919742	.	+	0	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000621:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919743	8919843	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=intron:HG003_chrY_T0000621:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919844	8919989	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=exon:HG003_chrY_T0000621:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919844	8919989	.	+	2	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000621:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919990	8920095	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=intron:HG003_chrY_T0000621:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920096	8920177	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=exon:HG003_chrY_T0000621:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8920096	8920177	.	+	0	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000621:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8920178	8920871	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=intron:HG003_chrY_T0000621:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920872	8921082	.	+	.	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=exon:HG003_chrY_T0000621:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8920872	8920894	.	+	2	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000621:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8920892	8920894	.	+	0	source_transcript=ENST00000287721.13;source_transcript_name=TSPY8-201;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000287721.13;alignment_mode=liftoff;normalized_transcript_id=ENST00000287721.13;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000621;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000621;transcript_name=HG003_chrY_T0000621;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000621;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8918286	8921081	100	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_G0000179;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=HG003_chrY_T0000622;Name=TSPY8
HG003_chrY	CAT	exon	8918286	8918418	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=exon:HG003_chrY_T0000622:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8918332	8918418	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000622:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8918332	8918334	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000622;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8918419	8918679	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=intron:HG003_chrY_T0000622:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8918680	8918817	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=exon:HG003_chrY_T0000622:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8918680	8918817	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000622:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8918818	8919424	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=intron:HG003_chrY_T0000622:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919425	8919502	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=exon:HG003_chrY_T0000622:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919425	8919502	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000622:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919503	8919630	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=intron:HG003_chrY_T0000622:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919631	8919742	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=exon:HG003_chrY_T0000622:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919631	8919742	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000622:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919743	8919843	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=intron:HG003_chrY_T0000622:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919844	8919989	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=exon:HG003_chrY_T0000622:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919844	8919989	.	+	2	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000622:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919990	8920084	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=intron:HG003_chrY_T0000622:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920085	8920177	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=exon:HG003_chrY_T0000622:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8920085	8920147	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000622:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8920145	8920147	.	+	0	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000622;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8920178	8920871	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=intron:HG003_chrY_T0000622:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920872	8921081	.	+	.	source_transcript=ENST00000383005.8;source_transcript_name=TSPY8-203;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383005.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000383005.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383005.8;transcript_id=HG003_chrY_T0000622;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000622;transcript_name=HG003_chrY_T0000622;gene_name=TSPY8;ID=exon:HG003_chrY_T0000622:6;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8918332	8921081	100	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_G0000179;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=HG003_chrY_T0000623;Name=TSPY8
HG003_chrY	CAT	exon	8918332	8918817	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=exon:HG003_chrY_T0000623:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8918332	8918817	.	+	0	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000623:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8918332	8918334	.	+	0	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=start_codon:HG003_chrY_T0000623;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8918818	8919424	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=intron:HG003_chrY_T0000623:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919425	8919502	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=exon:HG003_chrY_T0000623:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919425	8919502	.	+	0	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000623:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919503	8919630	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=intron:HG003_chrY_T0000623:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919631	8919742	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=exon:HG003_chrY_T0000623:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919631	8919742	.	+	0	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000623:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919743	8919843	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=intron:HG003_chrY_T0000623:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919844	8919989	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=exon:HG003_chrY_T0000623:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8919844	8919989	.	+	2	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000623:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919990	8920084	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=intron:HG003_chrY_T0000623:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920085	8920177	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=exon:HG003_chrY_T0000623:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8920085	8920147	.	+	0	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=CDS:HG003_chrY_T0000623:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8920145	8920147	.	+	0	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=stop_codon:HG003_chrY_T0000623;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8920178	8920871	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=intron:HG003_chrY_T0000623:4;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920872	8921081	.	+	.	source_transcript=ENST00000383000.1;source_transcript_name=TSPY8-202;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383000.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000623;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000623;transcript_name=HG003_chrY_T0000623;gene_name=TSPY8;ID=exon:HG003_chrY_T0000623:5;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8918332	8921088	1000	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=299.894;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_G0000179;transcript_name=HG003_chrY_T0000624;gene_name=TSPY8;ID=HG003_chrY_T0000624;Name=TSPY8
HG003_chrY	CAT	exon	8918332	8918817	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=299.894;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000624;transcript_name=HG003_chrY_T0000624;gene_name=TSPY8;ID=exon:HG003_chrY_T0000624:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8918818	8919424	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=299.894;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000624;transcript_name=HG003_chrY_T0000624;gene_name=TSPY8;ID=intron:HG003_chrY_T0000624:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919425	8919502	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=299.894;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000624;transcript_name=HG003_chrY_T0000624;gene_name=TSPY8;ID=exon:HG003_chrY_T0000624:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919503	8919630	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=299.894;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000624;transcript_name=HG003_chrY_T0000624;gene_name=TSPY8;ID=intron:HG003_chrY_T0000624:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8919631	8920177	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=299.894;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000624;transcript_name=HG003_chrY_T0000624;gene_name=TSPY8;ID=exon:HG003_chrY_T0000624:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8920178	8920304	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=299.894;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000624;transcript_name=HG003_chrY_T0000624;gene_name=TSPY8;ID=intron:HG003_chrY_T0000624:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920305	8921088	.	+	.	source_transcript=ENST00000477879.1;source_transcript_name=TSPY8-205;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000477879.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000477879.1;transcript_score=299.894;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000624;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000624;transcript_name=HG003_chrY_T0000624;gene_name=TSPY8;ID=exon:HG003_chrY_T0000624:3;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8919692	8921073	1000	+	.	source_transcript=ENST00000436159.2;source_transcript_name=TSPY8-204;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000436159.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000436159.2;transcript_score=299.828;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000436159.2;transcript_id=HG003_chrY_T0000625;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_G0000179;transcript_name=HG003_chrY_T0000625;gene_name=TSPY8;ID=HG003_chrY_T0000625;Name=TSPY8
HG003_chrY	CAT	exon	8919692	8919989	.	+	.	source_transcript=ENST00000436159.2;source_transcript_name=TSPY8-204;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000436159.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000436159.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000436159.2;transcript_id=HG003_chrY_T0000625;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000625;transcript_name=HG003_chrY_T0000625;gene_name=TSPY8;ID=exon:HG003_chrY_T0000625:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8919990	8920095	.	+	.	source_transcript=ENST00000436159.2;source_transcript_name=TSPY8-204;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000436159.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000436159.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000436159.2;transcript_id=HG003_chrY_T0000625;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000625;transcript_name=HG003_chrY_T0000625;gene_name=TSPY8;ID=intron:HG003_chrY_T0000625:0;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920096	8920177	.	+	.	source_transcript=ENST00000436159.2;source_transcript_name=TSPY8-204;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000436159.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000436159.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000436159.2;transcript_id=HG003_chrY_T0000625;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000625;transcript_name=HG003_chrY_T0000625;gene_name=TSPY8;ID=exon:HG003_chrY_T0000625:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8920178	8920871	.	+	.	source_transcript=ENST00000436159.2;source_transcript_name=TSPY8-204;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000436159.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000436159.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000436159.2;transcript_id=HG003_chrY_T0000625;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000625;transcript_name=HG003_chrY_T0000625;gene_name=TSPY8;ID=intron:HG003_chrY_T0000625:1;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8920872	8921073	.	+	.	source_transcript=ENST00000436159.2;source_transcript_name=TSPY8-204;source_gene=ENSG00000229549.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000229549.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000436159.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000436159.2;transcript_score=299.828;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY8;alternative_source_transcripts=ENST00000436159.2;transcript_id=HG003_chrY_T0000625;gene_id=HG003_chrY_G0000179;Parent=HG003_chrY_T0000625;transcript_name=HG003_chrY_T0000625;gene_name=TSPY8;ID=exon:HG003_chrY_T0000625:2;Name=TSPY8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8928332	8936230	.	-	.	source_gene_common_name=FAM197Y8;source_gene=ENSG00000293362.1_2;gene_id=HG003_chrY_G0000180;gene_biotype=lncRNA;gene_name=FAM197Y8;gene_sources=liftoff;ID=HG003_chrY_G0000180;Name=FAM197Y8
HG003_chrY	CAT	transcript	8928332	8936230	1000	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_G0000180;transcript_name=HG003_chrY_T0000626;gene_name=FAM197Y8;ID=HG003_chrY_T0000626;Name=FAM197Y8
HG003_chrY	CAT	exon	8928332	8930459	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000626;transcript_name=HG003_chrY_T0000626;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000626:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8930460	8934010	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000626;transcript_name=HG003_chrY_T0000626;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000626:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8934011	8934096	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000626;transcript_name=HG003_chrY_T0000626;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000626:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8934097	8935909	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000626;transcript_name=HG003_chrY_T0000626;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000626:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8935910	8936019	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000626;transcript_name=HG003_chrY_T0000626;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000626:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8936020	8936215	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000626;transcript_name=HG003_chrY_T0000626;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000626:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8936216	8936230	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000626;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000626;transcript_name=HG003_chrY_T0000626;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000626:3;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8930399	8936011	1000	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_G0000180;transcript_name=HG003_chrY_T0000627;gene_name=FAM197Y8;ID=HG003_chrY_T0000627;Name=FAM197Y8
HG003_chrY	CAT	exon	8930399	8930459	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000627;transcript_name=HG003_chrY_T0000627;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000627:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8930460	8934010	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000627;transcript_name=HG003_chrY_T0000627;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000627:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8934011	8934169	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000627;transcript_name=HG003_chrY_T0000627;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000627:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8934170	8935677	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000627;transcript_name=HG003_chrY_T0000627;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000627:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8935678	8935823	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000627;transcript_name=HG003_chrY_T0000627;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000627:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8935824	8935909	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000627;transcript_name=HG003_chrY_T0000627;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000627:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8935910	8936011	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000627;gene_id=HG003_chrY_G0000180;Parent=HG003_chrY_T0000627;transcript_name=HG003_chrY_T0000627;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000627:3;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8935675	8937642	.	-	.	source_gene_common_name=FAM197Y8;source_gene=ENSG00000225560.7;gene_id=HG003_chrY_G0000181;gene_biotype=transcribed_processed_pseudogene;gene_name=FAM197Y8;gene_sources=liftoff;ID=HG003_chrY_G0000181;Name=FAM197Y8
HG003_chrY	CAT	transcript	8935675	8937642	1000	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_G0000181;transcript_name=HG003_chrY_T0000628;gene_name=FAM197Y8;ID=HG003_chrY_T0000628;Name=FAM197Y8
HG003_chrY	CAT	exon	8935675	8935823	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000628;transcript_name=HG003_chrY_T0000628;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000628:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8935824	8935909	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000628;transcript_name=HG003_chrY_T0000628;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000628:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8935910	8936019	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000628;transcript_name=HG003_chrY_T0000628;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000628:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8936020	8937341	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000628;transcript_name=HG003_chrY_T0000628;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000628:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8937342	8937642	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000628;gene_id=HG003_chrY_G0000181;Parent=HG003_chrY_T0000628;transcript_name=HG003_chrY_T0000628;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000628:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8938665	8941433	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1_4;gene_id=HG003_chrY_G0000182;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000182;Name=ENSG00000293749
HG003_chrY	CAT	transcript	8938665	8941433	1000	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_G0000182;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=HG003_chrY_T0000629;Name=ENSG00000293749
HG003_chrY	CAT	exon	8938665	8938757	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000629:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8938758	8939018	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000629:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939019	8939156	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000629:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939157	8939763	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000629:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939764	8939841	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000629:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939842	8939969	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000629:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939970	8940081	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000629:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940082	8940182	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000629:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940183	8940328	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000629:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940329	8940434	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000629:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940435	8940516	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000629:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000629:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941433	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000629;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000629;transcript_name=HG003_chrY_T0000629;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000629:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8938677	8941421	1000	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_G0000182;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=HG003_chrY_T0000631;Name=ENSG00000293749
HG003_chrY	CAT	exon	8938677	8938757	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000631:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8938758	8939018	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000631:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939019	8939156	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000631:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939157	8939763	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000631:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939764	8939841	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000631:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939842	8939969	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000631:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939970	8940081	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000631:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940082	8940189	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000631:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940190	8940328	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000631:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940329	8940434	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000631:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940435	8940516	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000631:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000631:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941421	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000631;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000631;transcript_name=HG003_chrY_T0000631;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000631:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8938686	8941428	1000	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_G0000182;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=HG003_chrY_T0000632;Name=ENSG00000293749
HG003_chrY	CAT	exon	8938686	8938757	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000632:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8938758	8939018	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000632:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939019	8939156	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000632:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939157	8939763	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000632:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939764	8939841	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000632:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939842	8939969	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000632:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939970	8940081	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000632:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940082	8940182	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000632:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940183	8940328	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000632:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940329	8940423	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000632:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940424	8940516	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000632:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000632:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941428	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000632;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000632;transcript_name=HG003_chrY_T0000632;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000632:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8938888	8941426	1000	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_G0000182;transcript_name=HG003_chrY_T0000633;gene_name=ENSG00000293749;ID=HG003_chrY_T0000633;Name=ENSG00000293749
HG003_chrY	CAT	exon	8938888	8939156	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000633;transcript_name=HG003_chrY_T0000633;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000633:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939157	8939763	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000633;transcript_name=HG003_chrY_T0000633;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000633:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939764	8939841	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000633;transcript_name=HG003_chrY_T0000633;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000633:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939842	8939969	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000633;transcript_name=HG003_chrY_T0000633;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000633:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939970	8940081	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000633;transcript_name=HG003_chrY_T0000633;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000633:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940082	8940182	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000633;transcript_name=HG003_chrY_T0000633;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000633:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940183	8940328	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000633;transcript_name=HG003_chrY_T0000633;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000633:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940329	8940434	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000633;transcript_name=HG003_chrY_T0000633;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000633:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940435	8940516	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000633;transcript_name=HG003_chrY_T0000633;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000633:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000633;transcript_name=HG003_chrY_T0000633;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000633:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941426	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000633;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000633;transcript_name=HG003_chrY_T0000633;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000633:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8938984	8941421	1000	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_G0000182;transcript_name=HG003_chrY_T0000634;gene_name=ENSG00000293749;ID=HG003_chrY_T0000634;Name=ENSG00000293749
HG003_chrY	CAT	exon	8938984	8939156	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000634;transcript_name=HG003_chrY_T0000634;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000634:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939157	8939763	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000634;transcript_name=HG003_chrY_T0000634;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000634:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939764	8939841	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000634;transcript_name=HG003_chrY_T0000634;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000634:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939842	8939969	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000634;transcript_name=HG003_chrY_T0000634;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000634:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939970	8940081	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000634;transcript_name=HG003_chrY_T0000634;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000634:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940082	8940189	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000634;transcript_name=HG003_chrY_T0000634;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000634:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940190	8940328	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000634;transcript_name=HG003_chrY_T0000634;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000634:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940329	8940434	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000634;transcript_name=HG003_chrY_T0000634;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000634:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940435	8940516	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000634;transcript_name=HG003_chrY_T0000634;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000634:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000634;transcript_name=HG003_chrY_T0000634;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000634:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941421	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000634;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000634;transcript_name=HG003_chrY_T0000634;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000634:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8939110	8941432	1000	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_G0000182;transcript_name=HG003_chrY_T0000635;gene_name=ENSG00000293749;ID=HG003_chrY_T0000635;Name=ENSG00000293749
HG003_chrY	CAT	exon	8939110	8939212	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000635;transcript_name=HG003_chrY_T0000635;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000635:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939213	8939781	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000635;transcript_name=HG003_chrY_T0000635;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000635:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939782	8939841	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000635;transcript_name=HG003_chrY_T0000635;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000635:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939842	8939969	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000635;transcript_name=HG003_chrY_T0000635;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000635:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939970	8940081	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000635;transcript_name=HG003_chrY_T0000635;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000635:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940082	8940182	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000635;transcript_name=HG003_chrY_T0000635;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000635:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940183	8940328	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000635;transcript_name=HG003_chrY_T0000635;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000635:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940329	8940434	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000635;transcript_name=HG003_chrY_T0000635;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000635:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940435	8940516	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000635;transcript_name=HG003_chrY_T0000635;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000635:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000635;transcript_name=HG003_chrY_T0000635;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000635:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941432	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000635;gene_id=HG003_chrY_G0000182;Parent=HG003_chrY_T0000635;transcript_name=HG003_chrY_T0000635;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000635:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8938671	8941233	.	+	.	source_gene_common_name=TSPY6P;source_gene=ENSG00000270073.1_4;gene_id=HG003_chrY_G0000183;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY6P;gene_sources=liftoff;ID=HG003_chrY_G0000183;Name=TSPY6P
HG003_chrY	CAT	transcript	8938671	8941233	1000	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_G0000183;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=HG003_chrY_T0000630;Name=TSPY6P
HG003_chrY	CAT	exon	8938671	8938881	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000630:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8938882	8938889	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000630:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8938890	8939156	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000630:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939157	8939763	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000630:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939764	8939841	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000630:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939842	8939969	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000630:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939970	8940081	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000630:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940082	8940182	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000630:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940183	8940328	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000630:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940329	8940434	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000630:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940435	8940516	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000630:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000630:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941233	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000630;gene_id=HG003_chrY_G0000183;Parent=HG003_chrY_T0000630;transcript_name=HG003_chrY_T0000630;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000630:6;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8939811	8941428	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1;gene_id=HG003_chrY_G0000184;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000184;Name=ENSG00000293749
HG003_chrY	CAT	transcript	8939811	8941419	1000	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_G0000184;transcript_name=HG003_chrY_T0000636;gene_name=ENSG00000293749;ID=HG003_chrY_T0000636;Name=ENSG00000293749
HG003_chrY	CAT	exon	8939811	8939841	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000636;transcript_name=HG003_chrY_T0000636;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000636:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8939842	8939969	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000636;transcript_name=HG003_chrY_T0000636;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000636:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8939970	8940328	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000636;transcript_name=HG003_chrY_T0000636;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000636:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940329	8940434	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000636;transcript_name=HG003_chrY_T0000636;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000636:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8940435	8940516	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000636;transcript_name=HG003_chrY_T0000636;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000636:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000636;transcript_name=HG003_chrY_T0000636;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000636:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941419	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000636;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000636;transcript_name=HG003_chrY_T0000636;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000636:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8940356	8941428	1000	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_G0000184;transcript_name=HG003_chrY_T0000637;gene_name=ENSG00000293749;ID=HG003_chrY_T0000637;Name=ENSG00000293749
HG003_chrY	CAT	exon	8940356	8940516	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000637;transcript_name=HG003_chrY_T0000637;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000637:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8940517	8941210	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000637;transcript_name=HG003_chrY_T0000637;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000637:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8941211	8941428	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000637;gene_id=HG003_chrY_G0000184;Parent=HG003_chrY_T0000637;transcript_name=HG003_chrY_T0000637;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000637:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8948620	8956497	.	-	.	source_gene_common_name=FAM197Y8;source_gene=ENSG00000293362.1;gene_id=HG003_chrY_G0000185;gene_biotype=lncRNA;gene_name=FAM197Y8;gene_sources=liftoff;ID=HG003_chrY_G0000185;Name=FAM197Y8
HG003_chrY	CAT	transcript	8948620	8956497	1000	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_G0000185;transcript_name=HG003_chrY_T0000638;gene_name=FAM197Y8;ID=HG003_chrY_T0000638;Name=FAM197Y8
HG003_chrY	CAT	exon	8948620	8950748	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000638;transcript_name=HG003_chrY_T0000638;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000638:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8950749	8954298	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000638;transcript_name=HG003_chrY_T0000638;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000638:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8954299	8954384	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000638;transcript_name=HG003_chrY_T0000638;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000638:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8954385	8956176	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000638;transcript_name=HG003_chrY_T0000638;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000638:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8956177	8956286	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000638;transcript_name=HG003_chrY_T0000638;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000638:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8956287	8956482	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000638;transcript_name=HG003_chrY_T0000638;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000638:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8956483	8956497	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000638;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000638;transcript_name=HG003_chrY_T0000638;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000638:3;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8950688	8956278	1000	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_G0000185;transcript_name=HG003_chrY_T0000639;gene_name=FAM197Y8;ID=HG003_chrY_T0000639;Name=FAM197Y8
HG003_chrY	CAT	exon	8950688	8950748	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000639;transcript_name=HG003_chrY_T0000639;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000639:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8950749	8954298	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000639;transcript_name=HG003_chrY_T0000639;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000639:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8954299	8954457	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000639;transcript_name=HG003_chrY_T0000639;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000639:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8954458	8955944	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000639;transcript_name=HG003_chrY_T0000639;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000639:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8955945	8956090	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000639;transcript_name=HG003_chrY_T0000639;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000639:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8956091	8956176	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000639;transcript_name=HG003_chrY_T0000639;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000639:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8956177	8956278	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000639;gene_id=HG003_chrY_G0000185;Parent=HG003_chrY_T0000639;transcript_name=HG003_chrY_T0000639;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000639:3;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8955942	8957908	.	-	.	source_gene_common_name=FAM197Y8;source_gene=ENSG00000225560.7_2;gene_id=HG003_chrY_G0000186;gene_biotype=transcribed_processed_pseudogene;gene_name=FAM197Y8;gene_sources=liftoff;ID=HG003_chrY_G0000186;Name=FAM197Y8
HG003_chrY	CAT	transcript	8955942	8957908	1000	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7_2;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7_2;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_G0000186;transcript_name=HG003_chrY_T0000640;gene_name=FAM197Y8;ID=HG003_chrY_T0000640;Name=FAM197Y8
HG003_chrY	CAT	exon	8955942	8956090	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7_2;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7_2;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000640;transcript_name=HG003_chrY_T0000640;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000640:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8956091	8956176	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7_2;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7_2;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000640;transcript_name=HG003_chrY_T0000640;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000640:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8956177	8956286	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7_2;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7_2;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000640;transcript_name=HG003_chrY_T0000640;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000640:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8956287	8957607	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7_2;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7_2;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000640;transcript_name=HG003_chrY_T0000640;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000640:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8957608	8957908	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7_2;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7_2;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000640;gene_id=HG003_chrY_G0000186;Parent=HG003_chrY_T0000640;transcript_name=HG003_chrY_T0000640;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000640:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8958895	8961700	.	+	.	source_gene_common_name=ENSG00000301844;source_gene=ENSG00000301844.1_1;gene_id=HG003_chrY_G0000187;gene_biotype=lncRNA;gene_name=ENSG00000301844;gene_sources=liftoff;ID=HG003_chrY_G0000187;Name=ENSG00000301844
HG003_chrY	CAT	transcript	8958895	8961700	1000	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=HG003_chrY_T0000641;gene_name=ENSG00000301844;ID=HG003_chrY_T0000641;Name=ENSG00000301844
HG003_chrY	CAT	exon	8958895	8959423	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000641;transcript_name=HG003_chrY_T0000641;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000641:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000641;transcript_name=HG003_chrY_T0000641;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000641:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000641;transcript_name=HG003_chrY_T0000641;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000641:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000641;transcript_name=HG003_chrY_T0000641;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000641:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960348	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000641;transcript_name=HG003_chrY_T0000641;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000641:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960349	8960449	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000641;transcript_name=HG003_chrY_T0000641;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000641:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960450	8960595	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000641;transcript_name=HG003_chrY_T0000641;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000641:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960596	8960701	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000641;transcript_name=HG003_chrY_T0000641;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000641:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960702	8960783	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000641;transcript_name=HG003_chrY_T0000641;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000641:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000641;transcript_name=HG003_chrY_T0000641;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000641:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961700	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000641;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000641;transcript_name=HG003_chrY_T0000641;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000641:5;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8958904	8961695	1000	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=HG003_chrY_T0000642;gene_name=ENSG00000301844;ID=HG003_chrY_T0000642;Name=ENSG00000301844
HG003_chrY	CAT	exon	8958904	8959423	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000642;transcript_name=HG003_chrY_T0000642;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000642:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000642;transcript_name=HG003_chrY_T0000642;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000642:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000642;transcript_name=HG003_chrY_T0000642;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000642:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000642;transcript_name=HG003_chrY_T0000642;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000642:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960348	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000642;transcript_name=HG003_chrY_T0000642;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000642:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960349	8960456	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000642;transcript_name=HG003_chrY_T0000642;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000642:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960457	8960595	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000642;transcript_name=HG003_chrY_T0000642;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000642:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960596	8960701	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000642;transcript_name=HG003_chrY_T0000642;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000642:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960702	8960783	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000642;transcript_name=HG003_chrY_T0000642;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000642:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000642;transcript_name=HG003_chrY_T0000642;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000642:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961695	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000642;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000642;transcript_name=HG003_chrY_T0000642;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000642:5;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8958926	8961690	1000	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=HG003_chrY_T0000643;gene_name=ENSG00000301844;ID=HG003_chrY_T0000643;Name=ENSG00000301844
HG003_chrY	CAT	exon	8958926	8959423	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000643;transcript_name=HG003_chrY_T0000643;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000643:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000643;transcript_name=HG003_chrY_T0000643;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000643:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000643;transcript_name=HG003_chrY_T0000643;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000643:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000643;transcript_name=HG003_chrY_T0000643;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000643:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960348	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000643;transcript_name=HG003_chrY_T0000643;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000643:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960349	8960449	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000643;transcript_name=HG003_chrY_T0000643;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000643:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960450	8960783	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000643;transcript_name=HG003_chrY_T0000643;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000643:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000643;transcript_name=HG003_chrY_T0000643;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000643:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961690	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000643;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000643;transcript_name=HG003_chrY_T0000643;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000643:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8958936	8961695	1000	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=HG003_chrY_T0000644;gene_name=ENSG00000301844;ID=HG003_chrY_T0000644;Name=ENSG00000301844
HG003_chrY	CAT	exon	8958936	8959423	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000644;transcript_name=HG003_chrY_T0000644;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000644:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000644;transcript_name=HG003_chrY_T0000644;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000644:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000644;transcript_name=HG003_chrY_T0000644;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000644:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000644;transcript_name=HG003_chrY_T0000644;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000644:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960595	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000644;transcript_name=HG003_chrY_T0000644;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000644:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960596	8960701	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000644;transcript_name=HG003_chrY_T0000644;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000644:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960702	8960783	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000644;transcript_name=HG003_chrY_T0000644;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000644:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000644;transcript_name=HG003_chrY_T0000644;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000644:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961695	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000644;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000644;transcript_name=HG003_chrY_T0000644;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000644:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8958938	8961688	1000	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=HG003_chrY_T0000645;gene_name=ENSG00000301844;ID=HG003_chrY_T0000645;Name=ENSG00000301844
HG003_chrY	CAT	exon	8958938	8959423	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000645;transcript_name=HG003_chrY_T0000645;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000645:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000645;transcript_name=HG003_chrY_T0000645;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000645:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000645;transcript_name=HG003_chrY_T0000645;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000645:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000645;transcript_name=HG003_chrY_T0000645;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000645:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960783	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000645;transcript_name=HG003_chrY_T0000645;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000645:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000645;transcript_name=HG003_chrY_T0000645;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000645:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961688	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000645;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000645;transcript_name=HG003_chrY_T0000645;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000645:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8958938	8961695	1000	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=HG003_chrY_T0000646;gene_name=ENSG00000301844;ID=HG003_chrY_T0000646;Name=ENSG00000301844
HG003_chrY	CAT	exon	8958938	8959423	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000646;transcript_name=HG003_chrY_T0000646;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000646:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000646;transcript_name=HG003_chrY_T0000646;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000646:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000646;transcript_name=HG003_chrY_T0000646;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000646:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000646;transcript_name=HG003_chrY_T0000646;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000646:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960348	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000646;transcript_name=HG003_chrY_T0000646;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000646:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960349	8960449	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000646;transcript_name=HG003_chrY_T0000646;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000646:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960450	8960595	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000646;transcript_name=HG003_chrY_T0000646;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000646:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960596	8960690	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000646;transcript_name=HG003_chrY_T0000646;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000646:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960691	8960783	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000646;transcript_name=HG003_chrY_T0000646;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000646:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000646;transcript_name=HG003_chrY_T0000646;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000646:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961695	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000646;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000646;transcript_name=HG003_chrY_T0000646;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000646:5;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8958958	8961695	1000	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_G0000187;transcript_name=HG003_chrY_T0000648;gene_name=ENSG00000301844;ID=HG003_chrY_T0000648;Name=ENSG00000301844
HG003_chrY	CAT	exon	8958958	8959423	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000648;transcript_name=HG003_chrY_T0000648;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000648:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000648;transcript_name=HG003_chrY_T0000648;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000648:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000648;transcript_name=HG003_chrY_T0000648;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000648:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000648;transcript_name=HG003_chrY_T0000648;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000648:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960595	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000648;transcript_name=HG003_chrY_T0000648;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000648:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960596	8960690	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000648;transcript_name=HG003_chrY_T0000648;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000648:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960691	8960783	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000648;transcript_name=HG003_chrY_T0000648;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000648:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000648;transcript_name=HG003_chrY_T0000648;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000648:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961695	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000648;gene_id=HG003_chrY_G0000187;Parent=HG003_chrY_T0000648;transcript_name=HG003_chrY_T0000648;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000648:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8958938	8961688	.	+	.	source_gene_common_name=TSPY7P;source_gene=ENSG00000188656.8_1;gene_id=HG003_chrY_G0000188;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY7P;gene_sources=liftoff;ID=HG003_chrY_G0000188;Name=TSPY7P
HG003_chrY	CAT	transcript	8958938	8961688	1000	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_G0000188;transcript_name=HG003_chrY_T0000647;gene_name=TSPY7P;ID=HG003_chrY_T0000647;Name=TSPY7P
HG003_chrY	CAT	exon	8958938	8959423	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000647;transcript_name=HG003_chrY_T0000647;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000647:0;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8959424	8960030	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000647;transcript_name=HG003_chrY_T0000647;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000647:0;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960031	8960108	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000647;transcript_name=HG003_chrY_T0000647;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000647:1;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960109	8960236	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000647;transcript_name=HG003_chrY_T0000647;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000647:1;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960237	8960348	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000647;transcript_name=HG003_chrY_T0000647;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000647:2;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960349	8960449	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000647;transcript_name=HG003_chrY_T0000647;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000647:2;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960450	8960595	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000647;transcript_name=HG003_chrY_T0000647;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000647:3;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960596	8960701	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000647;transcript_name=HG003_chrY_T0000647;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000647:3;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8960702	8960783	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000647;transcript_name=HG003_chrY_T0000647;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000647:4;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8960784	8961477	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000647;transcript_name=HG003_chrY_T0000647;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000647:4;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8961478	8961688	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000647;gene_id=HG003_chrY_G0000188;Parent=HG003_chrY_T0000647;transcript_name=HG003_chrY_T0000647;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000647:5;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8968927	8976803	.	-	.	source_gene_common_name=FAM197Y7;source_gene=ENSG00000228383.7;gene_id=HG003_chrY_G0000189;gene_biotype=lncRNA;gene_name=FAM197Y7;gene_sources=liftoff;ID=HG003_chrY_G0000189;Name=FAM197Y7
HG003_chrY	CAT	transcript	8968927	8976803	1000	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_G0000189;transcript_name=HG003_chrY_T0000649;gene_name=FAM197Y7;ID=HG003_chrY_T0000649;Name=FAM197Y7
HG003_chrY	CAT	exon	8968927	8971040	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000649;transcript_name=HG003_chrY_T0000649;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000649:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8971041	8974589	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000649;transcript_name=HG003_chrY_T0000649;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000649:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8974590	8974675	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000649;transcript_name=HG003_chrY_T0000649;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000649:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8974676	8976482	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000649;transcript_name=HG003_chrY_T0000649;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000649:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8976483	8976592	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000649;transcript_name=HG003_chrY_T0000649;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000649:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8976593	8976788	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000649;transcript_name=HG003_chrY_T0000649;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000649:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8976789	8976803	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000649;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000649;transcript_name=HG003_chrY_T0000649;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000649:3;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8970981	8976584	1000	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_G0000189;transcript_name=HG003_chrY_T0000650;gene_name=FAM197Y7;ID=HG003_chrY_T0000650;Name=FAM197Y7
HG003_chrY	CAT	exon	8970981	8971040	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000650;transcript_name=HG003_chrY_T0000650;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000650:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8971041	8974589	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000650;transcript_name=HG003_chrY_T0000650;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000650:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8974590	8974748	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000650;transcript_name=HG003_chrY_T0000650;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000650:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8974749	8976250	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000650;transcript_name=HG003_chrY_T0000650;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000650:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8976251	8976396	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000650;transcript_name=HG003_chrY_T0000650;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000650:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8976397	8976482	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000650;transcript_name=HG003_chrY_T0000650;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000650:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8976483	8976584	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000650;gene_id=HG003_chrY_G0000189;Parent=HG003_chrY_T0000650;transcript_name=HG003_chrY_T0000650;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000650:3;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8976251	8978243	.	-	.	source_gene_common_name=ENSG00000286120;source_gene=ENSG00000286120.1_4;gene_id=HG003_chrY_G0000190;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000286120;gene_sources=liftoff;ID=HG003_chrY_G0000190;Name=ENSG00000286120
HG003_chrY	CAT	transcript	8976251	8978243	1000	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000190;Parent=HG003_chrY_G0000190;transcript_name=HG003_chrY_T0000651;gene_name=ENSG00000286120;ID=HG003_chrY_T0000651;Name=ENSG00000286120
HG003_chrY	CAT	exon	8976251	8976396	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000190;Parent=HG003_chrY_T0000651;transcript_name=HG003_chrY_T0000651;gene_name=ENSG00000286120;ID=exon:HG003_chrY_T0000651:0;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8976397	8977932	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000190;Parent=HG003_chrY_T0000651;transcript_name=HG003_chrY_T0000651;gene_name=ENSG00000286120;ID=intron:HG003_chrY_T0000651:0;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8977933	8978243	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000651;gene_id=HG003_chrY_G0000190;Parent=HG003_chrY_T0000651;transcript_name=HG003_chrY_T0000651;gene_name=ENSG00000286120;ID=exon:HG003_chrY_T0000651:1;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8979197	8982011	.	+	.	source_gene_common_name=TSPY4;source_gene=ENSG00000233803.9;alternative_source_transcripts=ENST00000287721.13;gene_id=HG003_chrY_G0000191;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff;ID=HG003_chrY_G0000191;Name=TSPY4
HG003_chrY	CAT	transcript	8979197	8982011	100	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_G0000191;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=HG003_chrY_T0000652;Name=TSPY4
HG003_chrY	CAT	exon	8979197	8979746	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=exon:HG003_chrY_T0000652:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8979243	8979746	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000652:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8979243	8979245	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000652;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8979747	8980353	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=intron:HG003_chrY_T0000652:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980354	8980431	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=exon:HG003_chrY_T0000652:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980354	8980431	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000652:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980432	8980559	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=intron:HG003_chrY_T0000652:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980560	8980671	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=exon:HG003_chrY_T0000652:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980560	8980671	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000652:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980672	8980772	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=intron:HG003_chrY_T0000652:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980773	8980918	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=exon:HG003_chrY_T0000652:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980773	8980918	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000652:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980919	8981024	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=intron:HG003_chrY_T0000652:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981025	8981106	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=exon:HG003_chrY_T0000652:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8981025	8981106	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000652:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8981107	8981800	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=intron:HG003_chrY_T0000652:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981801	8982011	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=exon:HG003_chrY_T0000652:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8981801	8981823	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000652:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8981821	8981823	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000287721.13;transcript_id=HG003_chrY_T0000652;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000652;transcript_name=HG003_chrY_T0000652;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000652;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8979197	8981890	100	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_G0000191;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=HG003_chrY_T0000653;Name=TSPY4
HG003_chrY	CAT	exon	8979197	8979329	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=exon:HG003_chrY_T0000653:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8979243	8979329	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000653:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8979243	8979245	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000653;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8979330	8979608	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=intron:HG003_chrY_T0000653:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8979609	8979746	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=exon:HG003_chrY_T0000653:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8979609	8979746	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000653:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8979747	8980353	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=intron:HG003_chrY_T0000653:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980354	8980431	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=exon:HG003_chrY_T0000653:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980354	8980431	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000653:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980432	8980559	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=intron:HG003_chrY_T0000653:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980560	8980671	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=exon:HG003_chrY_T0000653:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980560	8980671	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000653:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980672	8980772	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=intron:HG003_chrY_T0000653:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980773	8980918	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=exon:HG003_chrY_T0000653:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980773	8980918	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000653:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980919	8981024	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=intron:HG003_chrY_T0000653:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981025	8981106	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=exon:HG003_chrY_T0000653:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8981025	8981106	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000653:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8981107	8981800	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=intron:HG003_chrY_T0000653:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981801	8981890	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=exon:HG003_chrY_T0000653:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8981801	8981823	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000653:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8981821	8981823	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000653;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000653;transcript_name=HG003_chrY_T0000653;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000653;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8979243	8982010	100	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_G0000191;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=HG003_chrY_T0000654;Name=TSPY4
HG003_chrY	CAT	exon	8979243	8979746	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=exon:HG003_chrY_T0000654:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8979243	8979746	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000654:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8979243	8979245	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000654;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8979747	8980353	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=intron:HG003_chrY_T0000654:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980354	8980431	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=exon:HG003_chrY_T0000654:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980354	8980431	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000654:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980432	8980559	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=intron:HG003_chrY_T0000654:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980560	8980671	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=exon:HG003_chrY_T0000654:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980560	8980671	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000654:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980672	8980772	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=intron:HG003_chrY_T0000654:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980773	8980918	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=exon:HG003_chrY_T0000654:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8980773	8980918	.	+	2	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000654:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980919	8981013	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=intron:HG003_chrY_T0000654:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981014	8981106	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=exon:HG003_chrY_T0000654:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8981014	8981076	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000654:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	8981074	8981076	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000654;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8981107	8981800	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=intron:HG003_chrY_T0000654:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981801	8982010	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000383000.1;transcript_id=HG003_chrY_T0000654;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000654;transcript_name=HG003_chrY_T0000654;gene_name=TSPY4;ID=exon:HG003_chrY_T0000654:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8979243	8982017	1000	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_G0000191;transcript_name=HG003_chrY_T0000655;gene_name=TSPY4;ID=HG003_chrY_T0000655;Name=TSPY4
HG003_chrY	CAT	exon	8979243	8979746	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000655;transcript_name=HG003_chrY_T0000655;gene_name=TSPY4;ID=exon:HG003_chrY_T0000655:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8979747	8980353	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000655;transcript_name=HG003_chrY_T0000655;gene_name=TSPY4;ID=intron:HG003_chrY_T0000655:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980354	8980431	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000655;transcript_name=HG003_chrY_T0000655;gene_name=TSPY4;ID=exon:HG003_chrY_T0000655:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980432	8980559	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000655;transcript_name=HG003_chrY_T0000655;gene_name=TSPY4;ID=intron:HG003_chrY_T0000655:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8980560	8981106	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000655;transcript_name=HG003_chrY_T0000655;gene_name=TSPY4;ID=exon:HG003_chrY_T0000655:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8981107	8981233	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000655;transcript_name=HG003_chrY_T0000655;gene_name=TSPY4;ID=intron:HG003_chrY_T0000655:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981234	8982017	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;alternative_source_transcripts=ENST00000477879.1;transcript_id=HG003_chrY_T0000655;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000655;transcript_name=HG003_chrY_T0000655;gene_name=TSPY4;ID=exon:HG003_chrY_T0000655:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8980621	8982002	1000	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000656;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_G0000191;transcript_name=HG003_chrY_T0000656;gene_name=TSPY4;ID=HG003_chrY_T0000656;Name=TSPY4
HG003_chrY	CAT	exon	8980621	8980918	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000656;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000656;transcript_name=HG003_chrY_T0000656;gene_name=TSPY4;ID=exon:HG003_chrY_T0000656:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8980919	8981013	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000656;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000656;transcript_name=HG003_chrY_T0000656;gene_name=TSPY4;ID=intron:HG003_chrY_T0000656:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981014	8981106	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000656;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000656;transcript_name=HG003_chrY_T0000656;gene_name=TSPY4;ID=exon:HG003_chrY_T0000656:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8981107	8981800	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000656;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000656;transcript_name=HG003_chrY_T0000656;gene_name=TSPY4;ID=intron:HG003_chrY_T0000656:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8981801	8982002	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000656;gene_id=HG003_chrY_G0000191;Parent=HG003_chrY_T0000656;transcript_name=HG003_chrY_T0000656;gene_name=TSPY4;ID=exon:HG003_chrY_T0000656:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8991186	8996928	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000192;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000192;Name=FAM197Y5
HG003_chrY	CAT	transcript	8991186	8996928	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=HG003_chrY_T0000657;gene_name=FAM197Y5;ID=HG003_chrY_T0000657;Name=FAM197Y5
HG003_chrY	CAT	exon	8991186	8991375	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000657;transcript_name=HG003_chrY_T0000657;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000657:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8991376	8994925	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000657;transcript_name=HG003_chrY_T0000657;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000657:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8994926	8995011	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000657;transcript_name=HG003_chrY_T0000657;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000657:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8995012	8996814	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000657;transcript_name=HG003_chrY_T0000657;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000657:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8996815	8996928	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000657;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000657;transcript_name=HG003_chrY_T0000657;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000657:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	8991316	8996916	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_G0000192;transcript_name=HG003_chrY_T0000658;gene_name=FAM197Y5;ID=HG003_chrY_T0000658;Name=FAM197Y5
HG003_chrY	CAT	exon	8991316	8991375	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000658;transcript_name=HG003_chrY_T0000658;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000658:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8991376	8994925	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000658;transcript_name=HG003_chrY_T0000658;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000658:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8994926	8995084	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000658;transcript_name=HG003_chrY_T0000658;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000658:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8995085	8996582	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000658;transcript_name=HG003_chrY_T0000658;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000658:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8996583	8996728	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000658;transcript_name=HG003_chrY_T0000658;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000658:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8996729	8996814	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000658;transcript_name=HG003_chrY_T0000658;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000658:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8996815	8996916	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000658;gene_id=HG003_chrY_G0000192;Parent=HG003_chrY_T0000658;transcript_name=HG003_chrY_T0000658;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000658:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8996583	8998575	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_12;gene_id=HG003_chrY_G0000193;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000193;Name=FAM197Y5
HG003_chrY	CAT	transcript	8996583	8998575	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_12;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_12;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000659;gene_id=HG003_chrY_G0000193;Parent=HG003_chrY_G0000193;transcript_name=HG003_chrY_T0000659;gene_name=FAM197Y5;ID=HG003_chrY_T0000659;Name=FAM197Y5
HG003_chrY	CAT	exon	8996583	8996728	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_12;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_12;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000659;gene_id=HG003_chrY_G0000193;Parent=HG003_chrY_T0000659;transcript_name=HG003_chrY_T0000659;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000659:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	8996729	8998264	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_12;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_12;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000659;gene_id=HG003_chrY_G0000193;Parent=HG003_chrY_T0000659;transcript_name=HG003_chrY_T0000659;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000659:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	8998265	8998575	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_12;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_12;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000659;gene_id=HG003_chrY_G0000193;Parent=HG003_chrY_T0000659;transcript_name=HG003_chrY_T0000659;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000659:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	8999529	9002343	.	+	.	source_gene_common_name=TSPY9;source_gene=ENSG00000238074.6;gene_id=HG003_chrY_G0000194;gene_biotype=protein_coding;gene_name=TSPY9;gene_sources=liftoff;ID=HG003_chrY_G0000194;Name=TSPY9
HG003_chrY	CAT	transcript	8999529	9002343	100	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_G0000194;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=HG003_chrY_T0000660;Name=TSPY9
HG003_chrY	CAT	exon	8999529	9000078	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=exon:HG003_chrY_T0000660:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	8999575	9000078	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000660:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	8999575	8999577	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000660;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9000079	9000685	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=intron:HG003_chrY_T0000660:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9000686	9000763	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=exon:HG003_chrY_T0000660:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9000686	9000763	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000660:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9000764	9000891	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=intron:HG003_chrY_T0000660:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9000892	9001003	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=exon:HG003_chrY_T0000660:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9000892	9001003	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000660:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9001004	9001104	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=intron:HG003_chrY_T0000660:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9001105	9001250	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=exon:HG003_chrY_T0000660:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9001105	9001250	.	+	2	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000660:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9001251	9001356	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=intron:HG003_chrY_T0000660:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9001357	9001438	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=exon:HG003_chrY_T0000660:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9001357	9001438	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000660:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9001439	9002132	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=intron:HG003_chrY_T0000660:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9002133	9002343	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=exon:HG003_chrY_T0000660:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9002133	9002155	.	+	2	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000660:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9002153	9002155	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000660;gene_id=HG003_chrY_G0000194;Parent=HG003_chrY_T0000660;transcript_name=HG003_chrY_T0000660;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000660;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9009554	9017426	.	-	.	source_gene_common_name=FAM197Y7;source_gene=ENSG00000228383.7_1;gene_id=HG003_chrY_G0000195;gene_biotype=lncRNA;gene_name=FAM197Y7;gene_sources=liftoff;ID=HG003_chrY_G0000195;Name=FAM197Y7
HG003_chrY	CAT	transcript	9009554	9017426	1000	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_G0000195;transcript_name=HG003_chrY_T0000661;gene_name=FAM197Y7;ID=HG003_chrY_T0000661;Name=FAM197Y7
HG003_chrY	CAT	exon	9009554	9011667	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000661;transcript_name=HG003_chrY_T0000661;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000661:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9011668	9015216	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000661;transcript_name=HG003_chrY_T0000661;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000661:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9015217	9015302	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000661;transcript_name=HG003_chrY_T0000661;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000661:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9015303	9017105	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000661;transcript_name=HG003_chrY_T0000661;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000661:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9017106	9017215	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000661;transcript_name=HG003_chrY_T0000661;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000661:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9017216	9017411	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000661;transcript_name=HG003_chrY_T0000661;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000661:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9017412	9017426	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000661;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000661;transcript_name=HG003_chrY_T0000661;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000661:3;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9011608	9017207	1000	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_G0000195;transcript_name=HG003_chrY_T0000662;gene_name=FAM197Y7;ID=HG003_chrY_T0000662;Name=FAM197Y7
HG003_chrY	CAT	exon	9011608	9011667	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000662;transcript_name=HG003_chrY_T0000662;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000662:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9011668	9015216	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000662;transcript_name=HG003_chrY_T0000662;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000662:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9015217	9015375	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000662;transcript_name=HG003_chrY_T0000662;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000662:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9015376	9016873	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000662;transcript_name=HG003_chrY_T0000662;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000662:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9016874	9017019	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000662;transcript_name=HG003_chrY_T0000662;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000662:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9017020	9017105	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000662;transcript_name=HG003_chrY_T0000662;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000662:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9017106	9017207	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000662;gene_id=HG003_chrY_G0000195;Parent=HG003_chrY_T0000662;transcript_name=HG003_chrY_T0000662;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000662:3;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9016874	9018866	.	-	.	source_gene_common_name=ENSG00000286120;source_gene=ENSG00000286120.1;gene_id=HG003_chrY_G0000196;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000286120;gene_sources=liftoff;ID=HG003_chrY_G0000196;Name=ENSG00000286120
HG003_chrY	CAT	transcript	9016874	9018866	1000	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_G0000196;transcript_name=HG003_chrY_T0000663;gene_name=ENSG00000286120;ID=HG003_chrY_T0000663;Name=ENSG00000286120
HG003_chrY	CAT	exon	9016874	9017019	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000663;transcript_name=HG003_chrY_T0000663;gene_name=ENSG00000286120;ID=exon:HG003_chrY_T0000663:0;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9017020	9018555	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000663;transcript_name=HG003_chrY_T0000663;gene_name=ENSG00000286120;ID=intron:HG003_chrY_T0000663:0;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9018556	9018866	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000663;gene_id=HG003_chrY_G0000196;Parent=HG003_chrY_T0000663;transcript_name=HG003_chrY_T0000663;gene_name=ENSG00000286120;ID=exon:HG003_chrY_T0000663:1;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9019820	9022616	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;alternative_source_transcripts=ENST00000457222.6;gene_id=HG003_chrY_G0000197;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000197;Name=TSPY3
HG003_chrY	CAT	transcript	9019820	9022616	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_G0000197;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=HG003_chrY_T0000664;Name=TSPY3
HG003_chrY	CAT	exon	9019820	9020351	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=exon:HG003_chrY_T0000664:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9019866	9020351	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000664:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9019866	9019868	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000664;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9020352	9020958	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=intron:HG003_chrY_T0000664:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9020959	9021036	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=exon:HG003_chrY_T0000664:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9020959	9021036	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000664:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021037	9021164	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=intron:HG003_chrY_T0000664:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021165	9021276	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=exon:HG003_chrY_T0000664:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021165	9021276	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000664:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021277	9021377	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=intron:HG003_chrY_T0000664:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021378	9021523	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=exon:HG003_chrY_T0000664:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021378	9021523	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000664:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021524	9021629	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=intron:HG003_chrY_T0000664:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021630	9021711	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=exon:HG003_chrY_T0000664:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021630	9021711	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000664:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021712	9022405	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=intron:HG003_chrY_T0000664:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9022406	9022616	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=exon:HG003_chrY_T0000664:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9022406	9022428	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000664:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9022426	9022428	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000664;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000664;transcript_name=HG003_chrY_T0000664;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000664;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9019866	9022615	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_G0000197;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=HG003_chrY_T0000665;Name=TSPY3
HG003_chrY	CAT	exon	9019866	9020351	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=exon:HG003_chrY_T0000665:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9019866	9020351	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000665:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9019866	9019868	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000665;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9020352	9020958	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=intron:HG003_chrY_T0000665:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9020959	9021036	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=exon:HG003_chrY_T0000665:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9020959	9021036	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000665:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021037	9021164	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=intron:HG003_chrY_T0000665:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021165	9021276	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=exon:HG003_chrY_T0000665:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021165	9021276	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000665:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021277	9021377	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=intron:HG003_chrY_T0000665:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021378	9021523	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=exon:HG003_chrY_T0000665:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021378	9021523	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000665:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021524	9021618	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=intron:HG003_chrY_T0000665:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021619	9021711	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=exon:HG003_chrY_T0000665:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021619	9021681	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000665:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9021679	9021681	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000665;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021712	9022405	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=intron:HG003_chrY_T0000665:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9022406	9022615	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000665;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000665;transcript_name=HG003_chrY_T0000665;gene_name=TSPY3;ID=exon:HG003_chrY_T0000665:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9019866	9022428	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_G0000197;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=HG003_chrY_T0000666;Name=TSPY3
HG003_chrY	CAT	exon	9019866	9019952	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=exon:HG003_chrY_T0000666:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9019866	9019952	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000666:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9019866	9019868	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000666;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9019953	9020213	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=intron:HG003_chrY_T0000666:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9020214	9020351	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=exon:HG003_chrY_T0000666:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9020214	9020351	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000666:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9020352	9020958	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=intron:HG003_chrY_T0000666:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9020959	9021036	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=exon:HG003_chrY_T0000666:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9020959	9021036	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000666:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021037	9021164	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=intron:HG003_chrY_T0000666:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021165	9021276	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=exon:HG003_chrY_T0000666:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021165	9021276	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000666:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021277	9021377	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=intron:HG003_chrY_T0000666:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021378	9021523	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=exon:HG003_chrY_T0000666:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021378	9021523	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000666:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021524	9021629	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=intron:HG003_chrY_T0000666:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021630	9021711	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=exon:HG003_chrY_T0000666:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9021630	9021711	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000666:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021712	9022405	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=intron:HG003_chrY_T0000666:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9022406	9022428	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=exon:HG003_chrY_T0000666:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9022406	9022428	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000666:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9022426	9022428	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000666;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000666;transcript_name=HG003_chrY_T0000666;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000666;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9019866	9022622	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_G0000197;transcript_name=HG003_chrY_T0000667;gene_name=TSPY3;ID=HG003_chrY_T0000667;Name=TSPY3
HG003_chrY	CAT	exon	9019866	9020351	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000667;transcript_name=HG003_chrY_T0000667;gene_name=TSPY3;ID=exon:HG003_chrY_T0000667:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9020352	9020958	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000667;transcript_name=HG003_chrY_T0000667;gene_name=TSPY3;ID=intron:HG003_chrY_T0000667:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9020959	9021036	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000667;transcript_name=HG003_chrY_T0000667;gene_name=TSPY3;ID=exon:HG003_chrY_T0000667:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021037	9021164	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000667;transcript_name=HG003_chrY_T0000667;gene_name=TSPY3;ID=intron:HG003_chrY_T0000667:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021165	9021711	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000667;transcript_name=HG003_chrY_T0000667;gene_name=TSPY3;ID=exon:HG003_chrY_T0000667:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021712	9021838	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000667;transcript_name=HG003_chrY_T0000667;gene_name=TSPY3;ID=intron:HG003_chrY_T0000667:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021839	9022622	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000667;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000667;transcript_name=HG003_chrY_T0000667;gene_name=TSPY3;ID=exon:HG003_chrY_T0000667:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9021226	9022607	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000469322.1;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_G0000197;transcript_name=HG003_chrY_T0000668;gene_name=TSPY3;ID=HG003_chrY_T0000668;Name=TSPY3
HG003_chrY	CAT	exon	9021226	9021523	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000469322.1;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000668;transcript_name=HG003_chrY_T0000668;gene_name=TSPY3;ID=exon:HG003_chrY_T0000668:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021524	9021618	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000469322.1;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000668;transcript_name=HG003_chrY_T0000668;gene_name=TSPY3;ID=intron:HG003_chrY_T0000668:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9021619	9021711	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000469322.1;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000668;transcript_name=HG003_chrY_T0000668;gene_name=TSPY3;ID=exon:HG003_chrY_T0000668:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9021712	9022405	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000469322.1;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000668;transcript_name=HG003_chrY_T0000668;gene_name=TSPY3;ID=intron:HG003_chrY_T0000668:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9022406	9022607	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000469322.1;transcript_id=HG003_chrY_T0000668;gene_id=HG003_chrY_G0000197;Parent=HG003_chrY_T0000668;transcript_name=HG003_chrY_T0000668;gene_name=TSPY3;ID=exon:HG003_chrY_T0000668:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9031740	9037481	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000198;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000198;Name=FAM197Y5
HG003_chrY	CAT	transcript	9031740	9037481	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_G0000198;transcript_name=HG003_chrY_T0000669;gene_name=FAM197Y5;ID=HG003_chrY_T0000669;Name=FAM197Y5
HG003_chrY	CAT	exon	9031740	9031929	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000669;transcript_name=HG003_chrY_T0000669;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000669:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9031930	9035478	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000669;transcript_name=HG003_chrY_T0000669;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000669:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9035479	9035564	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000669;transcript_name=HG003_chrY_T0000669;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000669:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9035565	9037367	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000669;transcript_name=HG003_chrY_T0000669;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000669:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9037368	9037481	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000669;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000669;transcript_name=HG003_chrY_T0000669;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000669:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9031870	9037469	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_G0000198;transcript_name=HG003_chrY_T0000670;gene_name=FAM197Y5;ID=HG003_chrY_T0000670;Name=FAM197Y5
HG003_chrY	CAT	exon	9031870	9031929	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000670;transcript_name=HG003_chrY_T0000670;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000670:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9031930	9035478	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000670;transcript_name=HG003_chrY_T0000670;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000670:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9035479	9035637	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000670;transcript_name=HG003_chrY_T0000670;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000670:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9035638	9037135	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000670;transcript_name=HG003_chrY_T0000670;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000670:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9037136	9037281	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000670;transcript_name=HG003_chrY_T0000670;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000670:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9037282	9037367	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000670;transcript_name=HG003_chrY_T0000670;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000670:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9037368	9037469	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000670;gene_id=HG003_chrY_G0000198;Parent=HG003_chrY_T0000670;transcript_name=HG003_chrY_T0000670;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000670:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9037136	9039128	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_3;gene_id=HG003_chrY_G0000199;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000199;Name=FAM197Y5
HG003_chrY	CAT	transcript	9037136	9039128	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000671;gene_id=HG003_chrY_G0000199;Parent=HG003_chrY_G0000199;transcript_name=HG003_chrY_T0000671;gene_name=FAM197Y5;ID=HG003_chrY_T0000671;Name=FAM197Y5
HG003_chrY	CAT	exon	9037136	9037281	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000671;gene_id=HG003_chrY_G0000199;Parent=HG003_chrY_T0000671;transcript_name=HG003_chrY_T0000671;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000671:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9037282	9038817	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000671;gene_id=HG003_chrY_G0000199;Parent=HG003_chrY_T0000671;transcript_name=HG003_chrY_T0000671;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000671:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9038818	9039128	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000671;gene_id=HG003_chrY_G0000199;Parent=HG003_chrY_T0000671;transcript_name=HG003_chrY_T0000671;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000671:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9040082	9042878	.	+	.	source_gene_common_name=TSPY10;source_gene=ENSG00000236424.7;gene_id=HG003_chrY_G0000200;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff;ID=HG003_chrY_G0000200;Name=TSPY10
HG003_chrY	CAT	transcript	9040082	9042878	100	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_G0000200;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=HG003_chrY_T0000672;Name=TSPY10
HG003_chrY	CAT	exon	9040082	9040613	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=exon:HG003_chrY_T0000672:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9040128	9040613	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000672:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9040128	9040130	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000672;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9040614	9041220	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=intron:HG003_chrY_T0000672:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041221	9041298	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=exon:HG003_chrY_T0000672:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041221	9041298	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000672:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041299	9041426	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=intron:HG003_chrY_T0000672:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041427	9041538	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=exon:HG003_chrY_T0000672:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041427	9041538	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000672:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041539	9041639	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=intron:HG003_chrY_T0000672:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041640	9041785	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=exon:HG003_chrY_T0000672:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041640	9041785	.	+	2	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000672:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041786	9041891	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=intron:HG003_chrY_T0000672:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041892	9041973	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=exon:HG003_chrY_T0000672:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041892	9041973	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000672:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041974	9042667	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=intron:HG003_chrY_T0000672:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9042668	9042878	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=exon:HG003_chrY_T0000672:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9042668	9042690	.	+	2	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000672:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9042688	9042690	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000672;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000672;transcript_name=HG003_chrY_T0000672;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000672;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9040128	9042877	100	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_G0000200;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=HG003_chrY_T0000673;Name=TSPY10
HG003_chrY	CAT	exon	9040128	9040613	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=exon:HG003_chrY_T0000673:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9040128	9040613	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000673:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9040128	9040130	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000673;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9040614	9041220	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=intron:HG003_chrY_T0000673:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041221	9041298	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=exon:HG003_chrY_T0000673:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041221	9041298	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000673:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041299	9041426	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=intron:HG003_chrY_T0000673:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041427	9041538	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=exon:HG003_chrY_T0000673:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041427	9041538	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000673:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041539	9041639	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=intron:HG003_chrY_T0000673:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041640	9041785	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=exon:HG003_chrY_T0000673:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041640	9041785	.	+	2	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000673:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041786	9041880	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=intron:HG003_chrY_T0000673:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041881	9041973	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=exon:HG003_chrY_T0000673:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9041881	9041943	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000673:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9041941	9041943	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000673;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041974	9042667	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=intron:HG003_chrY_T0000673:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9042668	9042877	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000673;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000673;transcript_name=HG003_chrY_T0000673;gene_name=TSPY10;ID=exon:HG003_chrY_T0000673:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9040128	9042884	1000	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_G0000200;transcript_name=HG003_chrY_T0000674;gene_name=TSPY10;ID=HG003_chrY_T0000674;Name=TSPY10
HG003_chrY	CAT	exon	9040128	9040613	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000674;transcript_name=HG003_chrY_T0000674;gene_name=TSPY10;ID=exon:HG003_chrY_T0000674:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9040614	9041220	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000674;transcript_name=HG003_chrY_T0000674;gene_name=TSPY10;ID=intron:HG003_chrY_T0000674:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041221	9041298	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000674;transcript_name=HG003_chrY_T0000674;gene_name=TSPY10;ID=exon:HG003_chrY_T0000674:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041299	9041426	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000674;transcript_name=HG003_chrY_T0000674;gene_name=TSPY10;ID=intron:HG003_chrY_T0000674:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041427	9041973	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000674;transcript_name=HG003_chrY_T0000674;gene_name=TSPY10;ID=exon:HG003_chrY_T0000674:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041974	9042100	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000674;transcript_name=HG003_chrY_T0000674;gene_name=TSPY10;ID=intron:HG003_chrY_T0000674:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9042101	9042884	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000674;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000674;transcript_name=HG003_chrY_T0000674;gene_name=TSPY10;ID=exon:HG003_chrY_T0000674:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9041488	9042869	1000	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_G0000200;transcript_name=HG003_chrY_T0000675;gene_name=TSPY10;ID=HG003_chrY_T0000675;Name=TSPY10
HG003_chrY	CAT	exon	9041488	9041785	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000675;transcript_name=HG003_chrY_T0000675;gene_name=TSPY10;ID=exon:HG003_chrY_T0000675:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041786	9041891	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000675;transcript_name=HG003_chrY_T0000675;gene_name=TSPY10;ID=intron:HG003_chrY_T0000675:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9041892	9041973	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000675;transcript_name=HG003_chrY_T0000675;gene_name=TSPY10;ID=exon:HG003_chrY_T0000675:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9041974	9042667	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000675;transcript_name=HG003_chrY_T0000675;gene_name=TSPY10;ID=intron:HG003_chrY_T0000675:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9042668	9042869	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000675;gene_id=HG003_chrY_G0000200;Parent=HG003_chrY_T0000675;transcript_name=HG003_chrY_T0000675;gene_name=TSPY10;ID=exon:HG003_chrY_T0000675:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9050083	9057968	.	-	.	source_gene_common_name=FAM197Y7;source_gene=ENSG00000228383.7_3;gene_id=HG003_chrY_G0000201;gene_biotype=lncRNA;gene_name=FAM197Y7;gene_sources=liftoff;ID=HG003_chrY_G0000201;Name=FAM197Y7
HG003_chrY	CAT	transcript	9050083	9057968	1000	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_G0000201;transcript_name=HG003_chrY_T0000676;gene_name=FAM197Y7;ID=HG003_chrY_T0000676;Name=FAM197Y7
HG003_chrY	CAT	exon	9050083	9052207	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000676;transcript_name=HG003_chrY_T0000676;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000676:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9052208	9055758	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000676;transcript_name=HG003_chrY_T0000676;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000676:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9055759	9055844	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000676;transcript_name=HG003_chrY_T0000676;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000676:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9055845	9057647	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000676;transcript_name=HG003_chrY_T0000676;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000676:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9057648	9057757	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000676;transcript_name=HG003_chrY_T0000676;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000676:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9057758	9057953	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000676;transcript_name=HG003_chrY_T0000676;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000676:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9057954	9057968	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000676;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000676;transcript_name=HG003_chrY_T0000676;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000676:3;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9052148	9057749	1000	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_G0000201;transcript_name=HG003_chrY_T0000677;gene_name=FAM197Y7;ID=HG003_chrY_T0000677;Name=FAM197Y7
HG003_chrY	CAT	exon	9052148	9052207	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000677;transcript_name=HG003_chrY_T0000677;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000677:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9052208	9055758	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000677;transcript_name=HG003_chrY_T0000677;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000677:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9055759	9055917	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000677;transcript_name=HG003_chrY_T0000677;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000677:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9055918	9057415	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000677;transcript_name=HG003_chrY_T0000677;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000677:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9057416	9057561	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000677;transcript_name=HG003_chrY_T0000677;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000677:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9057562	9057647	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000677;transcript_name=HG003_chrY_T0000677;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000677:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9057648	9057749	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000677;gene_id=HG003_chrY_G0000201;Parent=HG003_chrY_T0000677;transcript_name=HG003_chrY_T0000677;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000677:3;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9057416	9059408	.	-	.	source_gene_common_name=ENSG00000286120;source_gene=ENSG00000286120.1_2;gene_id=HG003_chrY_G0000202;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000286120;gene_sources=liftoff;ID=HG003_chrY_G0000202;Name=ENSG00000286120
HG003_chrY	CAT	transcript	9057416	9059408	1000	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000202;Parent=HG003_chrY_G0000202;transcript_name=HG003_chrY_T0000678;gene_name=ENSG00000286120;ID=HG003_chrY_T0000678;Name=ENSG00000286120
HG003_chrY	CAT	exon	9057416	9057561	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000202;Parent=HG003_chrY_T0000678;transcript_name=HG003_chrY_T0000678;gene_name=ENSG00000286120;ID=exon:HG003_chrY_T0000678:0;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9057562	9059097	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000202;Parent=HG003_chrY_T0000678;transcript_name=HG003_chrY_T0000678;gene_name=ENSG00000286120;ID=intron:HG003_chrY_T0000678:0;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9059098	9059408	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000678;gene_id=HG003_chrY_G0000202;Parent=HG003_chrY_T0000678;transcript_name=HG003_chrY_T0000678;gene_name=ENSG00000286120;ID=exon:HG003_chrY_T0000678:1;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9060362	9063158	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;gene_id=HG003_chrY_G0000203;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000203;Name=TSPY3
HG003_chrY	CAT	transcript	9060362	9063158	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_G0000203;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=HG003_chrY_T0000679;Name=TSPY3
HG003_chrY	CAT	exon	9060362	9060893	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=exon:HG003_chrY_T0000679:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9060408	9060893	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000679:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9060408	9060410	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000679;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9060894	9061500	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=intron:HG003_chrY_T0000679:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061501	9061578	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=exon:HG003_chrY_T0000679:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061501	9061578	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000679:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061579	9061706	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=intron:HG003_chrY_T0000679:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061707	9061818	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=exon:HG003_chrY_T0000679:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061707	9061818	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000679:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061819	9061919	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=intron:HG003_chrY_T0000679:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061920	9062065	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=exon:HG003_chrY_T0000679:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061920	9062065	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000679:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062066	9062171	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=intron:HG003_chrY_T0000679:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062172	9062253	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=exon:HG003_chrY_T0000679:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9062172	9062253	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000679:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062254	9062947	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=intron:HG003_chrY_T0000679:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062948	9063158	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=exon:HG003_chrY_T0000679:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9062948	9062970	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000679:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9062968	9062970	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000679;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000679;transcript_name=HG003_chrY_T0000679;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000679;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9060408	9062970	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_G0000203;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=HG003_chrY_T0000680;Name=TSPY3
HG003_chrY	CAT	exon	9060408	9060494	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=exon:HG003_chrY_T0000680:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9060408	9060494	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000680:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9060408	9060410	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000680;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9060495	9060755	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=intron:HG003_chrY_T0000680:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9060756	9060893	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=exon:HG003_chrY_T0000680:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9060756	9060893	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000680:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9060894	9061500	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=intron:HG003_chrY_T0000680:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061501	9061578	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=exon:HG003_chrY_T0000680:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061501	9061578	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000680:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061579	9061706	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=intron:HG003_chrY_T0000680:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061707	9061818	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=exon:HG003_chrY_T0000680:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061707	9061818	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000680:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061819	9061919	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=intron:HG003_chrY_T0000680:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061920	9062065	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=exon:HG003_chrY_T0000680:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061920	9062065	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000680:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062066	9062171	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=intron:HG003_chrY_T0000680:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062172	9062253	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=exon:HG003_chrY_T0000680:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9062172	9062253	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000680:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062254	9062947	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=intron:HG003_chrY_T0000680:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062948	9062970	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=exon:HG003_chrY_T0000680:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9062948	9062970	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000680:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9062968	9062970	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000680;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000680;transcript_name=HG003_chrY_T0000680;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000680;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9060408	9063157	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_G0000203;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=HG003_chrY_T0000681;Name=TSPY3
HG003_chrY	CAT	exon	9060408	9060893	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=exon:HG003_chrY_T0000681:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9060408	9060893	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000681:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9060408	9060410	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000681;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9060894	9061500	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=intron:HG003_chrY_T0000681:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061501	9061578	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=exon:HG003_chrY_T0000681:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061501	9061578	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000681:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061579	9061706	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=intron:HG003_chrY_T0000681:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061707	9061818	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=exon:HG003_chrY_T0000681:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061707	9061818	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000681:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061819	9061919	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=intron:HG003_chrY_T0000681:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061920	9062065	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=exon:HG003_chrY_T0000681:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9061920	9062065	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000681:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062066	9062160	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=intron:HG003_chrY_T0000681:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062161	9062253	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=exon:HG003_chrY_T0000681:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9062161	9062223	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000681:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9062221	9062223	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000681;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062254	9062947	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=intron:HG003_chrY_T0000681:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062948	9063157	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000681;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000681;transcript_name=HG003_chrY_T0000681;gene_name=TSPY3;ID=exon:HG003_chrY_T0000681:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9060408	9063164	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_G0000203;transcript_name=HG003_chrY_T0000682;gene_name=TSPY3;ID=HG003_chrY_T0000682;Name=TSPY3
HG003_chrY	CAT	exon	9060408	9060893	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000682;transcript_name=HG003_chrY_T0000682;gene_name=TSPY3;ID=exon:HG003_chrY_T0000682:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9060894	9061500	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000682;transcript_name=HG003_chrY_T0000682;gene_name=TSPY3;ID=intron:HG003_chrY_T0000682:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061501	9061578	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000682;transcript_name=HG003_chrY_T0000682;gene_name=TSPY3;ID=exon:HG003_chrY_T0000682:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9061579	9061706	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000682;transcript_name=HG003_chrY_T0000682;gene_name=TSPY3;ID=intron:HG003_chrY_T0000682:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9061707	9062253	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000682;transcript_name=HG003_chrY_T0000682;gene_name=TSPY3;ID=exon:HG003_chrY_T0000682:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062254	9062380	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000682;transcript_name=HG003_chrY_T0000682;gene_name=TSPY3;ID=intron:HG003_chrY_T0000682:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062381	9063164	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000682;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000682;transcript_name=HG003_chrY_T0000682;gene_name=TSPY3;ID=exon:HG003_chrY_T0000682:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9061768	9063149	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000683;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_G0000203;transcript_name=HG003_chrY_T0000683;gene_name=TSPY3;ID=HG003_chrY_T0000683;Name=TSPY3
HG003_chrY	CAT	exon	9061768	9062065	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000683;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000683;transcript_name=HG003_chrY_T0000683;gene_name=TSPY3;ID=exon:HG003_chrY_T0000683:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062066	9062160	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000683;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000683;transcript_name=HG003_chrY_T0000683;gene_name=TSPY3;ID=intron:HG003_chrY_T0000683:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062161	9062253	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000683;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000683;transcript_name=HG003_chrY_T0000683;gene_name=TSPY3;ID=exon:HG003_chrY_T0000683:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9062254	9062947	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000683;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000683;transcript_name=HG003_chrY_T0000683;gene_name=TSPY3;ID=intron:HG003_chrY_T0000683:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9062948	9063149	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000683;gene_id=HG003_chrY_G0000203;Parent=HG003_chrY_T0000683;transcript_name=HG003_chrY_T0000683;gene_name=TSPY3;ID=exon:HG003_chrY_T0000683:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9070362	9078048	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000290448.1_1;gene_id=HG003_chrY_G0000204;gene_biotype=lncRNA;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000204;Name=FAM197Y9
HG003_chrY	CAT	transcript	9070362	9078048	1000	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000684;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_G0000204;transcript_name=HG003_chrY_T0000684;gene_name=FAM197Y9;ID=HG003_chrY_T0000684;Name=FAM197Y9
HG003_chrY	CAT	exon	9070362	9072489	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000684;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000684;transcript_name=HG003_chrY_T0000684;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000684:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9072490	9076037	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000684;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000684;transcript_name=HG003_chrY_T0000684;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000684:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9076038	9076123	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000684;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000684;transcript_name=HG003_chrY_T0000684;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000684:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9076124	9077928	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000684;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000684;transcript_name=HG003_chrY_T0000684;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000684:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9077929	9078048	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000684;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000684;transcript_name=HG003_chrY_T0000684;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000684:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9072430	9078030	1000	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_G0000204;transcript_name=HG003_chrY_T0000685;gene_name=FAM197Y9;ID=HG003_chrY_T0000685;Name=FAM197Y9
HG003_chrY	CAT	exon	9072430	9072489	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000685;transcript_name=HG003_chrY_T0000685;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000685:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9072490	9076037	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000685;transcript_name=HG003_chrY_T0000685;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000685:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9076038	9076196	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000685;transcript_name=HG003_chrY_T0000685;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000685:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9076197	9077696	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000685;transcript_name=HG003_chrY_T0000685;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000685:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9077697	9077842	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000685;transcript_name=HG003_chrY_T0000685;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000685:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9077843	9077928	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000685;transcript_name=HG003_chrY_T0000685;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000685:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9077929	9078030	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000685;gene_id=HG003_chrY_G0000204;Parent=HG003_chrY_T0000685;transcript_name=HG003_chrY_T0000685;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000685:3;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9077697	9079690	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000234830.9_4;gene_id=HG003_chrY_G0000205;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000205;Name=FAM197Y9
HG003_chrY	CAT	transcript	9077697	9079690	1000	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000205;Parent=HG003_chrY_G0000205;transcript_name=HG003_chrY_T0000686;gene_name=FAM197Y9;ID=HG003_chrY_T0000686;Name=FAM197Y9
HG003_chrY	CAT	exon	9077697	9077842	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000205;Parent=HG003_chrY_T0000686;transcript_name=HG003_chrY_T0000686;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000686:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9077843	9077954	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000205;Parent=HG003_chrY_T0000686;transcript_name=HG003_chrY_T0000686;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000686:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9077955	9078038	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000205;Parent=HG003_chrY_T0000686;transcript_name=HG003_chrY_T0000686;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000686:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9078039	9079380	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000205;Parent=HG003_chrY_T0000686;transcript_name=HG003_chrY_T0000686;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000686:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9079381	9079690	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000686;gene_id=HG003_chrY_G0000205;Parent=HG003_chrY_T0000686;transcript_name=HG003_chrY_T0000686;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000686:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9080639	9083435	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;gene_id=HG003_chrY_G0000206;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000206;Name=TSPY3
HG003_chrY	CAT	transcript	9080639	9083435	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_G0000206;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=HG003_chrY_T0000687;Name=TSPY3
HG003_chrY	CAT	exon	9080639	9081170	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=exon:HG003_chrY_T0000687:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9080685	9081170	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000687:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9080685	9080687	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000687;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081171	9081777	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=intron:HG003_chrY_T0000687:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081778	9081855	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=exon:HG003_chrY_T0000687:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081778	9081855	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000687:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081856	9081983	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=intron:HG003_chrY_T0000687:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081984	9082095	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=exon:HG003_chrY_T0000687:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081984	9082095	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000687:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082096	9082196	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=intron:HG003_chrY_T0000687:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082197	9082342	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=exon:HG003_chrY_T0000687:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9082197	9082342	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000687:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082343	9082448	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=intron:HG003_chrY_T0000687:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082449	9082530	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=exon:HG003_chrY_T0000687:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9082449	9082530	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000687:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082531	9083224	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=intron:HG003_chrY_T0000687:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9083225	9083435	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=exon:HG003_chrY_T0000687:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9083225	9083247	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000687:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9083245	9083247	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000687;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000687;transcript_name=HG003_chrY_T0000687;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000687;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9080685	9083434	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_G0000206;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=HG003_chrY_T0000688;Name=TSPY3
HG003_chrY	CAT	exon	9080685	9081170	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=exon:HG003_chrY_T0000688:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9080685	9081170	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000688:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9080685	9080687	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000688;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081171	9081777	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=intron:HG003_chrY_T0000688:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081778	9081855	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=exon:HG003_chrY_T0000688:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081778	9081855	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000688:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081856	9081983	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=intron:HG003_chrY_T0000688:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081984	9082095	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=exon:HG003_chrY_T0000688:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081984	9082095	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000688:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082096	9082196	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=intron:HG003_chrY_T0000688:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082197	9082342	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=exon:HG003_chrY_T0000688:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9082197	9082342	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000688:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082343	9082437	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=intron:HG003_chrY_T0000688:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082438	9082530	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=exon:HG003_chrY_T0000688:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9082438	9082500	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000688:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9082498	9082500	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000688;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082531	9083224	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=intron:HG003_chrY_T0000688:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9083225	9083434	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000688;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000688;transcript_name=HG003_chrY_T0000688;gene_name=TSPY3;ID=exon:HG003_chrY_T0000688:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9080685	9083247	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_G0000206;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=HG003_chrY_T0000689;Name=TSPY3
HG003_chrY	CAT	exon	9080685	9080771	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=exon:HG003_chrY_T0000689:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9080685	9080771	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000689:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9080685	9080687	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000689;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9080772	9081032	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=intron:HG003_chrY_T0000689:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081033	9081170	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=exon:HG003_chrY_T0000689:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081033	9081170	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000689:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081171	9081777	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=intron:HG003_chrY_T0000689:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081778	9081855	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=exon:HG003_chrY_T0000689:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081778	9081855	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000689:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081856	9081983	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=intron:HG003_chrY_T0000689:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081984	9082095	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=exon:HG003_chrY_T0000689:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9081984	9082095	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000689:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082096	9082196	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=intron:HG003_chrY_T0000689:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082197	9082342	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=exon:HG003_chrY_T0000689:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9082197	9082342	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000689:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082343	9082448	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=intron:HG003_chrY_T0000689:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082449	9082530	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=exon:HG003_chrY_T0000689:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9082449	9082530	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000689:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082531	9083224	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=intron:HG003_chrY_T0000689:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9083225	9083247	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=exon:HG003_chrY_T0000689:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9083225	9083247	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000689:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9083245	9083247	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000689;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000689;transcript_name=HG003_chrY_T0000689;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000689;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9080685	9083441	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_G0000206;transcript_name=HG003_chrY_T0000690;gene_name=TSPY3;ID=HG003_chrY_T0000690;Name=TSPY3
HG003_chrY	CAT	exon	9080685	9081170	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000690;transcript_name=HG003_chrY_T0000690;gene_name=TSPY3;ID=exon:HG003_chrY_T0000690:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081171	9081777	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000690;transcript_name=HG003_chrY_T0000690;gene_name=TSPY3;ID=intron:HG003_chrY_T0000690:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081778	9081855	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000690;transcript_name=HG003_chrY_T0000690;gene_name=TSPY3;ID=exon:HG003_chrY_T0000690:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9081856	9081983	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000690;transcript_name=HG003_chrY_T0000690;gene_name=TSPY3;ID=intron:HG003_chrY_T0000690:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9081984	9082530	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000690;transcript_name=HG003_chrY_T0000690;gene_name=TSPY3;ID=exon:HG003_chrY_T0000690:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082531	9082657	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000690;transcript_name=HG003_chrY_T0000690;gene_name=TSPY3;ID=intron:HG003_chrY_T0000690:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082658	9083441	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000690;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000690;transcript_name=HG003_chrY_T0000690;gene_name=TSPY3;ID=exon:HG003_chrY_T0000690:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9082045	9083426	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_G0000206;transcript_name=HG003_chrY_T0000691;gene_name=TSPY3;ID=HG003_chrY_T0000691;Name=TSPY3
HG003_chrY	CAT	exon	9082045	9082342	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000691;transcript_name=HG003_chrY_T0000691;gene_name=TSPY3;ID=exon:HG003_chrY_T0000691:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082343	9082437	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000691;transcript_name=HG003_chrY_T0000691;gene_name=TSPY3;ID=intron:HG003_chrY_T0000691:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9082438	9082530	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000691;transcript_name=HG003_chrY_T0000691;gene_name=TSPY3;ID=exon:HG003_chrY_T0000691:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9082531	9083224	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000691;transcript_name=HG003_chrY_T0000691;gene_name=TSPY3;ID=intron:HG003_chrY_T0000691:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9083225	9083426	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000691;gene_id=HG003_chrY_G0000206;Parent=HG003_chrY_T0000691;transcript_name=HG003_chrY_T0000691;gene_name=TSPY3;ID=exon:HG003_chrY_T0000691:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9092575	9098321	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000207;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000207;Name=FAM197Y5
HG003_chrY	CAT	transcript	9092575	9098321	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_G0000207;transcript_name=HG003_chrY_T0000692;gene_name=FAM197Y5;ID=HG003_chrY_T0000692;Name=FAM197Y5
HG003_chrY	CAT	exon	9092575	9092764	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000692;transcript_name=HG003_chrY_T0000692;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000692:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9092765	9096314	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000692;transcript_name=HG003_chrY_T0000692;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000692:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9096315	9096400	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000692;transcript_name=HG003_chrY_T0000692;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000692:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9096401	9098207	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000692;transcript_name=HG003_chrY_T0000692;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000692:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9098208	9098321	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000692;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000692;transcript_name=HG003_chrY_T0000692;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000692:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9092705	9098309	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_G0000207;transcript_name=HG003_chrY_T0000693;gene_name=FAM197Y5;ID=HG003_chrY_T0000693;Name=FAM197Y5
HG003_chrY	CAT	exon	9092705	9092764	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000693;transcript_name=HG003_chrY_T0000693;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000693:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9092765	9096314	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000693;transcript_name=HG003_chrY_T0000693;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000693:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9096315	9096473	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000693;transcript_name=HG003_chrY_T0000693;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000693:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9096474	9097975	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000693;transcript_name=HG003_chrY_T0000693;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000693:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9097976	9098121	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000693;transcript_name=HG003_chrY_T0000693;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000693:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9098122	9098207	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000693;transcript_name=HG003_chrY_T0000693;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000693:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9098208	9098309	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000693;gene_id=HG003_chrY_G0000207;Parent=HG003_chrY_T0000693;transcript_name=HG003_chrY_T0000693;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000693:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9097976	9099968	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_7;gene_id=HG003_chrY_G0000208;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000208;Name=FAM197Y5
HG003_chrY	CAT	transcript	9097976	9099968	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000694;gene_id=HG003_chrY_G0000208;Parent=HG003_chrY_G0000208;transcript_name=HG003_chrY_T0000694;gene_name=FAM197Y5;ID=HG003_chrY_T0000694;Name=FAM197Y5
HG003_chrY	CAT	exon	9097976	9098121	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000694;gene_id=HG003_chrY_G0000208;Parent=HG003_chrY_T0000694;transcript_name=HG003_chrY_T0000694;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000694:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9098122	9099657	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000694;gene_id=HG003_chrY_G0000208;Parent=HG003_chrY_T0000694;transcript_name=HG003_chrY_T0000694;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000694:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9099658	9099968	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000694;gene_id=HG003_chrY_G0000208;Parent=HG003_chrY_T0000694;transcript_name=HG003_chrY_T0000694;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000694:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9100922	9103718	.	+	.	source_gene_common_name=TSPY10;source_gene=ENSG00000236424.7;gene_id=HG003_chrY_G0000209;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff;ID=HG003_chrY_G0000209;Name=TSPY10
HG003_chrY	CAT	transcript	9100922	9103718	100	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_G0000209;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=HG003_chrY_T0000695;Name=TSPY10
HG003_chrY	CAT	exon	9100922	9101453	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=exon:HG003_chrY_T0000695:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9100968	9101453	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000695:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9100968	9100970	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000695;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9101454	9102060	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=intron:HG003_chrY_T0000695:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102061	9102138	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=exon:HG003_chrY_T0000695:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102061	9102138	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000695:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102139	9102266	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=intron:HG003_chrY_T0000695:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102267	9102378	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=exon:HG003_chrY_T0000695:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102267	9102378	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000695:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102379	9102479	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=intron:HG003_chrY_T0000695:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102480	9102625	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=exon:HG003_chrY_T0000695:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102480	9102625	.	+	2	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000695:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102626	9102731	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=intron:HG003_chrY_T0000695:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102732	9102813	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=exon:HG003_chrY_T0000695:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102732	9102813	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000695:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102814	9103507	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=intron:HG003_chrY_T0000695:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9103508	9103718	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=exon:HG003_chrY_T0000695:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9103508	9103530	.	+	2	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000695:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9103528	9103530	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000695;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000695;transcript_name=HG003_chrY_T0000695;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000695;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9100968	9103717	100	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_G0000209;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=HG003_chrY_T0000696;Name=TSPY10
HG003_chrY	CAT	exon	9100968	9101453	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=exon:HG003_chrY_T0000696:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9100968	9101453	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000696:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9100968	9100970	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000696;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9101454	9102060	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=intron:HG003_chrY_T0000696:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102061	9102138	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=exon:HG003_chrY_T0000696:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102061	9102138	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000696:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102139	9102266	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=intron:HG003_chrY_T0000696:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102267	9102378	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=exon:HG003_chrY_T0000696:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102267	9102378	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000696:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102379	9102479	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=intron:HG003_chrY_T0000696:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102480	9102625	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=exon:HG003_chrY_T0000696:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102480	9102625	.	+	2	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000696:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102626	9102720	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=intron:HG003_chrY_T0000696:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102721	9102813	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=exon:HG003_chrY_T0000696:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9102721	9102783	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000696:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9102781	9102783	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000696;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102814	9103507	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=intron:HG003_chrY_T0000696:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9103508	9103717	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000696;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000696;transcript_name=HG003_chrY_T0000696;gene_name=TSPY10;ID=exon:HG003_chrY_T0000696:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9100968	9103724	1000	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000697;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_G0000209;transcript_name=HG003_chrY_T0000697;gene_name=TSPY10;ID=HG003_chrY_T0000697;Name=TSPY10
HG003_chrY	CAT	exon	9100968	9101453	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000697;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000697;transcript_name=HG003_chrY_T0000697;gene_name=TSPY10;ID=exon:HG003_chrY_T0000697:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9101454	9102060	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000697;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000697;transcript_name=HG003_chrY_T0000697;gene_name=TSPY10;ID=intron:HG003_chrY_T0000697:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102061	9102138	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000697;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000697;transcript_name=HG003_chrY_T0000697;gene_name=TSPY10;ID=exon:HG003_chrY_T0000697:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102139	9102266	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000697;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000697;transcript_name=HG003_chrY_T0000697;gene_name=TSPY10;ID=intron:HG003_chrY_T0000697:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102267	9102813	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000697;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000697;transcript_name=HG003_chrY_T0000697;gene_name=TSPY10;ID=exon:HG003_chrY_T0000697:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102814	9102940	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000697;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000697;transcript_name=HG003_chrY_T0000697;gene_name=TSPY10;ID=intron:HG003_chrY_T0000697:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102941	9103724	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000697;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000697;transcript_name=HG003_chrY_T0000697;gene_name=TSPY10;ID=exon:HG003_chrY_T0000697:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9102328	9103709	1000	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000698;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_G0000209;transcript_name=HG003_chrY_T0000698;gene_name=TSPY10;ID=HG003_chrY_T0000698;Name=TSPY10
HG003_chrY	CAT	exon	9102328	9102625	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000698;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000698;transcript_name=HG003_chrY_T0000698;gene_name=TSPY10;ID=exon:HG003_chrY_T0000698:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102626	9102731	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000698;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000698;transcript_name=HG003_chrY_T0000698;gene_name=TSPY10;ID=intron:HG003_chrY_T0000698:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9102732	9102813	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000698;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000698;transcript_name=HG003_chrY_T0000698;gene_name=TSPY10;ID=exon:HG003_chrY_T0000698:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9102814	9103507	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000698;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000698;transcript_name=HG003_chrY_T0000698;gene_name=TSPY10;ID=intron:HG003_chrY_T0000698:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9103508	9103709	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000698;gene_id=HG003_chrY_G0000209;Parent=HG003_chrY_T0000698;transcript_name=HG003_chrY_T0000698;gene_name=TSPY10;ID=exon:HG003_chrY_T0000698:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9112849	9118582	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000210;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000210;Name=FAM197Y5
HG003_chrY	CAT	transcript	9112849	9118582	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000699;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_G0000210;transcript_name=HG003_chrY_T0000699;gene_name=FAM197Y5;ID=HG003_chrY_T0000699;Name=FAM197Y5
HG003_chrY	CAT	exon	9112849	9113038	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000699;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000699;transcript_name=HG003_chrY_T0000699;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000699:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9113039	9116587	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000699;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000699;transcript_name=HG003_chrY_T0000699;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000699:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9116588	9116673	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000699;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000699;transcript_name=HG003_chrY_T0000699;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000699:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9116674	9118468	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000699;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000699;transcript_name=HG003_chrY_T0000699;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000699:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9118469	9118582	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000699;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000699;transcript_name=HG003_chrY_T0000699;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000699:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9112979	9118570	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_G0000210;transcript_name=HG003_chrY_T0000700;gene_name=FAM197Y5;ID=HG003_chrY_T0000700;Name=FAM197Y5
HG003_chrY	CAT	exon	9112979	9113038	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000700;transcript_name=HG003_chrY_T0000700;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000700:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9113039	9116587	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000700;transcript_name=HG003_chrY_T0000700;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000700:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9116588	9116746	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000700;transcript_name=HG003_chrY_T0000700;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000700:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9116747	9118236	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000700;transcript_name=HG003_chrY_T0000700;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000700:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9118237	9118382	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000700;transcript_name=HG003_chrY_T0000700;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000700:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9118383	9118468	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000700;transcript_name=HG003_chrY_T0000700;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000700:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9118469	9118570	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000700;gene_id=HG003_chrY_G0000210;Parent=HG003_chrY_T0000700;transcript_name=HG003_chrY_T0000700;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000700:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9118237	9120229	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_8;gene_id=HG003_chrY_G0000211;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000211;Name=FAM197Y5
HG003_chrY	CAT	transcript	9118237	9120229	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000701;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_G0000211;transcript_name=HG003_chrY_T0000701;gene_name=FAM197Y5;ID=HG003_chrY_T0000701;Name=FAM197Y5
HG003_chrY	CAT	exon	9118237	9118382	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000701;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000701;transcript_name=HG003_chrY_T0000701;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000701:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9118383	9119918	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000701;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000701;transcript_name=HG003_chrY_T0000701;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000701:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9119919	9120229	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000701;gene_id=HG003_chrY_G0000211;Parent=HG003_chrY_T0000701;transcript_name=HG003_chrY_T0000701;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000701:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9121183	9123997	.	+	.	source_gene_common_name=TSPY4;source_gene=ENSG00000233803.9;gene_id=HG003_chrY_G0000212;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff;ID=HG003_chrY_G0000212;Name=TSPY4
HG003_chrY	CAT	transcript	9121183	9123997	100	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_G0000212;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=HG003_chrY_T0000702;Name=TSPY4
HG003_chrY	CAT	exon	9121183	9121732	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=exon:HG003_chrY_T0000702:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9121229	9121732	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000702:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9121229	9121231	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000702;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9121733	9122339	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=intron:HG003_chrY_T0000702:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122340	9122417	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=exon:HG003_chrY_T0000702:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122340	9122417	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000702:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122418	9122545	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=intron:HG003_chrY_T0000702:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122546	9122657	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=exon:HG003_chrY_T0000702:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122546	9122657	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000702:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122658	9122758	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=intron:HG003_chrY_T0000702:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122759	9122904	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=exon:HG003_chrY_T0000702:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122759	9122904	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000702:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122905	9123010	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=intron:HG003_chrY_T0000702:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123011	9123092	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=exon:HG003_chrY_T0000702:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9123011	9123092	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000702:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9123093	9123786	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=intron:HG003_chrY_T0000702:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123787	9123997	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=exon:HG003_chrY_T0000702:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9123787	9123809	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000702:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9123807	9123809	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000702;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000702;transcript_name=HG003_chrY_T0000702;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000702;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9121183	9123876	100	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_G0000212;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=HG003_chrY_T0000703;Name=TSPY4
HG003_chrY	CAT	exon	9121183	9121315	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=exon:HG003_chrY_T0000703:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9121229	9121315	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000703:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9121229	9121231	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000703;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9121316	9121594	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=intron:HG003_chrY_T0000703:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9121595	9121732	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=exon:HG003_chrY_T0000703:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9121595	9121732	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000703:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9121733	9122339	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=intron:HG003_chrY_T0000703:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122340	9122417	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=exon:HG003_chrY_T0000703:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122340	9122417	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000703:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122418	9122545	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=intron:HG003_chrY_T0000703:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122546	9122657	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=exon:HG003_chrY_T0000703:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122546	9122657	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000703:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122658	9122758	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=intron:HG003_chrY_T0000703:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122759	9122904	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=exon:HG003_chrY_T0000703:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122759	9122904	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000703:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122905	9123010	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=intron:HG003_chrY_T0000703:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123011	9123092	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=exon:HG003_chrY_T0000703:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9123011	9123092	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000703:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9123093	9123786	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=intron:HG003_chrY_T0000703:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123787	9123876	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=exon:HG003_chrY_T0000703:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9123787	9123809	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000703:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9123807	9123809	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000703;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000703;transcript_name=HG003_chrY_T0000703;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000703;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9121229	9123996	100	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_G0000212;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=HG003_chrY_T0000704;Name=TSPY4
HG003_chrY	CAT	exon	9121229	9121732	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=exon:HG003_chrY_T0000704:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9121229	9121732	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000704:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9121229	9121231	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000704;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9121733	9122339	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=intron:HG003_chrY_T0000704:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122340	9122417	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=exon:HG003_chrY_T0000704:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122340	9122417	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000704:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122418	9122545	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=intron:HG003_chrY_T0000704:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122546	9122657	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=exon:HG003_chrY_T0000704:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122546	9122657	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000704:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122658	9122758	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=intron:HG003_chrY_T0000704:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122759	9122904	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=exon:HG003_chrY_T0000704:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9122759	9122904	.	+	2	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000704:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122905	9122999	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=intron:HG003_chrY_T0000704:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123000	9123092	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=exon:HG003_chrY_T0000704:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9123000	9123062	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000704:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9123060	9123062	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000704;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9123093	9123786	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=intron:HG003_chrY_T0000704:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123787	9123996	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000704;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000704;transcript_name=HG003_chrY_T0000704;gene_name=TSPY4;ID=exon:HG003_chrY_T0000704:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9121229	9124003	1000	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_G0000212;transcript_name=HG003_chrY_T0000705;gene_name=TSPY4;ID=HG003_chrY_T0000705;Name=TSPY4
HG003_chrY	CAT	exon	9121229	9121732	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000705;transcript_name=HG003_chrY_T0000705;gene_name=TSPY4;ID=exon:HG003_chrY_T0000705:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9121733	9122339	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000705;transcript_name=HG003_chrY_T0000705;gene_name=TSPY4;ID=intron:HG003_chrY_T0000705:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122340	9122417	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000705;transcript_name=HG003_chrY_T0000705;gene_name=TSPY4;ID=exon:HG003_chrY_T0000705:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122418	9122545	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000705;transcript_name=HG003_chrY_T0000705;gene_name=TSPY4;ID=intron:HG003_chrY_T0000705:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9122546	9123092	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000705;transcript_name=HG003_chrY_T0000705;gene_name=TSPY4;ID=exon:HG003_chrY_T0000705:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9123093	9123219	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000705;transcript_name=HG003_chrY_T0000705;gene_name=TSPY4;ID=intron:HG003_chrY_T0000705:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123220	9124003	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000705;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000705;transcript_name=HG003_chrY_T0000705;gene_name=TSPY4;ID=exon:HG003_chrY_T0000705:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9122607	9123988	1000	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_G0000212;transcript_name=HG003_chrY_T0000706;gene_name=TSPY4;ID=HG003_chrY_T0000706;Name=TSPY4
HG003_chrY	CAT	exon	9122607	9122904	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000706;transcript_name=HG003_chrY_T0000706;gene_name=TSPY4;ID=exon:HG003_chrY_T0000706:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9122905	9122999	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000706;transcript_name=HG003_chrY_T0000706;gene_name=TSPY4;ID=intron:HG003_chrY_T0000706:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123000	9123092	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000706;transcript_name=HG003_chrY_T0000706;gene_name=TSPY4;ID=exon:HG003_chrY_T0000706:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9123093	9123786	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000706;transcript_name=HG003_chrY_T0000706;gene_name=TSPY4;ID=intron:HG003_chrY_T0000706:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9123787	9123988	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000706;gene_id=HG003_chrY_G0000212;Parent=HG003_chrY_T0000706;transcript_name=HG003_chrY_T0000706;gene_name=TSPY4;ID=exon:HG003_chrY_T0000706:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9133158	9138897	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000213;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000213;Name=FAM197Y5
HG003_chrY	CAT	transcript	9133158	9138897	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000707;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_G0000213;transcript_name=HG003_chrY_T0000707;gene_name=FAM197Y5;ID=HG003_chrY_T0000707;Name=FAM197Y5
HG003_chrY	CAT	exon	9133158	9133347	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000707;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000707;transcript_name=HG003_chrY_T0000707;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000707:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9133348	9136896	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000707;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000707;transcript_name=HG003_chrY_T0000707;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000707:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9136897	9136982	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000707;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000707;transcript_name=HG003_chrY_T0000707;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000707:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9136983	9138783	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000707;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000707;transcript_name=HG003_chrY_T0000707;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000707:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9138784	9138897	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000707;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000707;transcript_name=HG003_chrY_T0000707;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000707:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9133288	9138885	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_G0000213;transcript_name=HG003_chrY_T0000708;gene_name=FAM197Y5;ID=HG003_chrY_T0000708;Name=FAM197Y5
HG003_chrY	CAT	exon	9133288	9133347	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000708;transcript_name=HG003_chrY_T0000708;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000708:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9133348	9136896	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000708;transcript_name=HG003_chrY_T0000708;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000708:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9136897	9137055	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000708;transcript_name=HG003_chrY_T0000708;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000708:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9137056	9138551	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000708;transcript_name=HG003_chrY_T0000708;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000708:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9138552	9138697	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000708;transcript_name=HG003_chrY_T0000708;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000708:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9138698	9138783	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000708;transcript_name=HG003_chrY_T0000708;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000708:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9138784	9138885	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000708;gene_id=HG003_chrY_G0000213;Parent=HG003_chrY_T0000708;transcript_name=HG003_chrY_T0000708;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000708:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9138552	9140544	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_2;gene_id=HG003_chrY_G0000214;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000214;Name=FAM197Y5
HG003_chrY	CAT	transcript	9138552	9140544	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000709;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_G0000214;transcript_name=HG003_chrY_T0000709;gene_name=FAM197Y5;ID=HG003_chrY_T0000709;Name=FAM197Y5
HG003_chrY	CAT	exon	9138552	9138697	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000709;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000709;transcript_name=HG003_chrY_T0000709;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000709:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9138698	9140233	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000709;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000709;transcript_name=HG003_chrY_T0000709;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000709:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9140234	9140544	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000709;gene_id=HG003_chrY_G0000214;Parent=HG003_chrY_T0000709;transcript_name=HG003_chrY_T0000709;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000709:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9141498	9144294	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;alternative_source_transcripts=ENST00000457222.6;gene_id=HG003_chrY_G0000215;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000215;Name=TSPY3
HG003_chrY	CAT	transcript	9141498	9144294	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_G0000215;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=HG003_chrY_T0000710;Name=TSPY3
HG003_chrY	CAT	exon	9141498	9142029	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=exon:HG003_chrY_T0000710:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9141544	9142029	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000710:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9141544	9141546	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000710;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142030	9142636	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=intron:HG003_chrY_T0000710:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142637	9142714	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=exon:HG003_chrY_T0000710:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9142637	9142714	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000710:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142715	9142842	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=intron:HG003_chrY_T0000710:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142843	9142954	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=exon:HG003_chrY_T0000710:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9142843	9142954	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000710:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142955	9143055	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=intron:HG003_chrY_T0000710:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143056	9143201	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=exon:HG003_chrY_T0000710:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9143056	9143201	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000710:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143202	9143307	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=intron:HG003_chrY_T0000710:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143308	9143389	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=exon:HG003_chrY_T0000710:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9143308	9143389	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000710:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143390	9144083	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=intron:HG003_chrY_T0000710:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9144084	9144294	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=exon:HG003_chrY_T0000710:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9144084	9144106	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000710:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9144104	9144106	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000457222.6;transcript_id=HG003_chrY_T0000710;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000710;transcript_name=HG003_chrY_T0000710;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000710;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9141544	9144293	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_G0000215;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=HG003_chrY_T0000711;Name=TSPY3
HG003_chrY	CAT	exon	9141544	9142029	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=exon:HG003_chrY_T0000711:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9141544	9142029	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000711:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9141544	9141546	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000711;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142030	9142636	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=intron:HG003_chrY_T0000711:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142637	9142714	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=exon:HG003_chrY_T0000711:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9142637	9142714	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000711:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142715	9142842	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=intron:HG003_chrY_T0000711:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142843	9142954	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=exon:HG003_chrY_T0000711:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9142843	9142954	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000711:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142955	9143055	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=intron:HG003_chrY_T0000711:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143056	9143201	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=exon:HG003_chrY_T0000711:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9143056	9143201	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000711:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143202	9143296	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=intron:HG003_chrY_T0000711:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143297	9143389	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=exon:HG003_chrY_T0000711:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9143297	9143359	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000711:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9143357	9143359	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000711;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143390	9144083	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=intron:HG003_chrY_T0000711:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9144084	9144293	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000424594.1;transcript_id=HG003_chrY_T0000711;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000711;transcript_name=HG003_chrY_T0000711;gene_name=TSPY3;ID=exon:HG003_chrY_T0000711:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9141544	9144106	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_G0000215;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=HG003_chrY_T0000712;Name=TSPY3
HG003_chrY	CAT	exon	9141544	9141630	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=exon:HG003_chrY_T0000712:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9141544	9141630	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000712:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9141544	9141546	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000712;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9141631	9141891	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=intron:HG003_chrY_T0000712:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9141892	9142029	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=exon:HG003_chrY_T0000712:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9141892	9142029	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000712:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142030	9142636	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=intron:HG003_chrY_T0000712:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142637	9142714	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=exon:HG003_chrY_T0000712:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9142637	9142714	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000712:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142715	9142842	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=intron:HG003_chrY_T0000712:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142843	9142954	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=exon:HG003_chrY_T0000712:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9142843	9142954	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000712:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142955	9143055	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=intron:HG003_chrY_T0000712:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143056	9143201	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=exon:HG003_chrY_T0000712:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9143056	9143201	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000712:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143202	9143307	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=intron:HG003_chrY_T0000712:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143308	9143389	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=exon:HG003_chrY_T0000712:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9143308	9143389	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000712:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143390	9144083	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=intron:HG003_chrY_T0000712:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9144084	9144106	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=exon:HG003_chrY_T0000712:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9144084	9144106	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000712:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9144104	9144106	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000440483.5;transcript_id=HG003_chrY_T0000712;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000712;transcript_name=HG003_chrY_T0000712;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000712;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9141544	9144300	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_G0000215;transcript_name=HG003_chrY_T0000713;gene_name=TSPY3;ID=HG003_chrY_T0000713;Name=TSPY3
HG003_chrY	CAT	exon	9141544	9142029	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000713;transcript_name=HG003_chrY_T0000713;gene_name=TSPY3;ID=exon:HG003_chrY_T0000713:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142030	9142636	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000713;transcript_name=HG003_chrY_T0000713;gene_name=TSPY3;ID=intron:HG003_chrY_T0000713:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142637	9142714	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000713;transcript_name=HG003_chrY_T0000713;gene_name=TSPY3;ID=exon:HG003_chrY_T0000713:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9142715	9142842	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000713;transcript_name=HG003_chrY_T0000713;gene_name=TSPY3;ID=intron:HG003_chrY_T0000713:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9142843	9143389	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000713;transcript_name=HG003_chrY_T0000713;gene_name=TSPY3;ID=exon:HG003_chrY_T0000713:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143390	9143516	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000713;transcript_name=HG003_chrY_T0000713;gene_name=TSPY3;ID=intron:HG003_chrY_T0000713:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143517	9144300	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000491844.1;transcript_id=HG003_chrY_T0000713;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000713;transcript_name=HG003_chrY_T0000713;gene_name=TSPY3;ID=exon:HG003_chrY_T0000713:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9142904	9144285	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000469322.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_G0000215;transcript_name=HG003_chrY_T0000714;gene_name=TSPY3;ID=HG003_chrY_T0000714;Name=TSPY3
HG003_chrY	CAT	exon	9142904	9143201	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000469322.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000714;transcript_name=HG003_chrY_T0000714;gene_name=TSPY3;ID=exon:HG003_chrY_T0000714:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143202	9143296	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000469322.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000714;transcript_name=HG003_chrY_T0000714;gene_name=TSPY3;ID=intron:HG003_chrY_T0000714:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9143297	9143389	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000469322.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000714;transcript_name=HG003_chrY_T0000714;gene_name=TSPY3;ID=exon:HG003_chrY_T0000714:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9143390	9144083	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000469322.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000714;transcript_name=HG003_chrY_T0000714;gene_name=TSPY3;ID=intron:HG003_chrY_T0000714:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9144084	9144285	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000469322.1;transcript_id=HG003_chrY_T0000714;gene_id=HG003_chrY_G0000215;Parent=HG003_chrY_T0000714;transcript_name=HG003_chrY_T0000714;gene_name=TSPY3;ID=exon:HG003_chrY_T0000714:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9151494	9159382	.	-	.	source_gene_common_name=FAM197Y7;source_gene=ENSG00000228383.7_2;gene_id=HG003_chrY_G0000216;gene_biotype=lncRNA;gene_name=FAM197Y7;gene_sources=liftoff;ID=HG003_chrY_G0000216;Name=FAM197Y7
HG003_chrY	CAT	transcript	9151494	9159382	1000	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_G0000216;transcript_name=HG003_chrY_T0000715;gene_name=FAM197Y7;ID=HG003_chrY_T0000715;Name=FAM197Y7
HG003_chrY	CAT	exon	9151494	9153617	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000715;transcript_name=HG003_chrY_T0000715;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000715:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9153618	9157168	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000715;transcript_name=HG003_chrY_T0000715;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000715:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9157169	9157254	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000715;transcript_name=HG003_chrY_T0000715;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000715:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9157255	9159061	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000715;transcript_name=HG003_chrY_T0000715;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000715:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9159062	9159171	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000715;transcript_name=HG003_chrY_T0000715;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000715:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9159172	9159367	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000715;transcript_name=HG003_chrY_T0000715;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000715:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9159368	9159382	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000715;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000715;transcript_name=HG003_chrY_T0000715;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000715:3;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9153558	9159163	1000	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_G0000216;transcript_name=HG003_chrY_T0000716;gene_name=FAM197Y7;ID=HG003_chrY_T0000716;Name=FAM197Y7
HG003_chrY	CAT	exon	9153558	9153617	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000716;transcript_name=HG003_chrY_T0000716;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000716:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9153618	9157168	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000716;transcript_name=HG003_chrY_T0000716;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000716:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9157169	9157327	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000716;transcript_name=HG003_chrY_T0000716;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000716:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9157328	9158829	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000716;transcript_name=HG003_chrY_T0000716;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000716:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9158830	9158975	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000716;transcript_name=HG003_chrY_T0000716;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000716:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9158976	9159061	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000716;transcript_name=HG003_chrY_T0000716;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000716:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9159062	9159163	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000716;gene_id=HG003_chrY_G0000216;Parent=HG003_chrY_T0000716;transcript_name=HG003_chrY_T0000716;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000716:3;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9158830	9160822	.	-	.	source_gene_common_name=ENSG00000286120;source_gene=ENSG00000286120.1_3;gene_id=HG003_chrY_G0000217;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000286120;gene_sources=liftoff;ID=HG003_chrY_G0000217;Name=ENSG00000286120
HG003_chrY	CAT	transcript	9158830	9160822	1000	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_G0000217;transcript_name=HG003_chrY_T0000717;gene_name=ENSG00000286120;ID=HG003_chrY_T0000717;Name=ENSG00000286120
HG003_chrY	CAT	exon	9158830	9158975	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000717;transcript_name=HG003_chrY_T0000717;gene_name=ENSG00000286120;ID=exon:HG003_chrY_T0000717:0;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9158976	9160511	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000717;transcript_name=HG003_chrY_T0000717;gene_name=ENSG00000286120;ID=intron:HG003_chrY_T0000717:0;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9160512	9160822	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000717;gene_id=HG003_chrY_G0000217;Parent=HG003_chrY_T0000717;transcript_name=HG003_chrY_T0000717;gene_name=ENSG00000286120;ID=exon:HG003_chrY_T0000717:1;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9161776	9164572	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;gene_id=HG003_chrY_G0000218;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000218;Name=TSPY3
HG003_chrY	CAT	transcript	9161776	9164572	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_G0000218;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=HG003_chrY_T0000718;Name=TSPY3
HG003_chrY	CAT	exon	9161776	9162307	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=exon:HG003_chrY_T0000718:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9161822	9162307	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000718:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9161822	9161824	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000718;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162308	9162914	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=intron:HG003_chrY_T0000718:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9162915	9162992	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=exon:HG003_chrY_T0000718:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9162915	9162992	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000718:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162993	9163120	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=intron:HG003_chrY_T0000718:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163121	9163232	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=exon:HG003_chrY_T0000718:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163121	9163232	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000718:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163233	9163333	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=intron:HG003_chrY_T0000718:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163334	9163479	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=exon:HG003_chrY_T0000718:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163334	9163479	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000718:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163480	9163585	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=intron:HG003_chrY_T0000718:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163586	9163667	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=exon:HG003_chrY_T0000718:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163586	9163667	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000718:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163668	9164361	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=intron:HG003_chrY_T0000718:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9164362	9164572	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=exon:HG003_chrY_T0000718:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9164362	9164384	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000718:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9164382	9164384	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000718;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000718;transcript_name=HG003_chrY_T0000718;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000718;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9161822	9164384	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_G0000218;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=HG003_chrY_T0000719;Name=TSPY3
HG003_chrY	CAT	exon	9161822	9161908	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=exon:HG003_chrY_T0000719:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9161822	9161908	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000719:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9161822	9161824	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000719;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9161909	9162169	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=intron:HG003_chrY_T0000719:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9162170	9162307	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=exon:HG003_chrY_T0000719:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9162170	9162307	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000719:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162308	9162914	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=intron:HG003_chrY_T0000719:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9162915	9162992	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=exon:HG003_chrY_T0000719:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9162915	9162992	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000719:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162993	9163120	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=intron:HG003_chrY_T0000719:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163121	9163232	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=exon:HG003_chrY_T0000719:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163121	9163232	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000719:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163233	9163333	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=intron:HG003_chrY_T0000719:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163334	9163479	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=exon:HG003_chrY_T0000719:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163334	9163479	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000719:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163480	9163585	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=intron:HG003_chrY_T0000719:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163586	9163667	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=exon:HG003_chrY_T0000719:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163586	9163667	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000719:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163668	9164361	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=intron:HG003_chrY_T0000719:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9164362	9164384	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=exon:HG003_chrY_T0000719:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9164362	9164384	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000719:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9164382	9164384	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000719;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000719;transcript_name=HG003_chrY_T0000719;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000719;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9161822	9164571	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_G0000218;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=HG003_chrY_T0000720;Name=TSPY3
HG003_chrY	CAT	exon	9161822	9162307	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=exon:HG003_chrY_T0000720:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9161822	9162307	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000720:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9161822	9161824	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000720;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162308	9162914	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=intron:HG003_chrY_T0000720:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9162915	9162992	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=exon:HG003_chrY_T0000720:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9162915	9162992	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000720:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162993	9163120	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=intron:HG003_chrY_T0000720:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163121	9163232	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=exon:HG003_chrY_T0000720:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163121	9163232	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000720:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163233	9163333	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=intron:HG003_chrY_T0000720:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163334	9163479	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=exon:HG003_chrY_T0000720:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163334	9163479	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000720:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163480	9163574	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=intron:HG003_chrY_T0000720:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163575	9163667	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=exon:HG003_chrY_T0000720:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9163575	9163637	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000720:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9163635	9163637	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000720;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163668	9164361	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=intron:HG003_chrY_T0000720:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9164362	9164571	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000720;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000720;transcript_name=HG003_chrY_T0000720;gene_name=TSPY3;ID=exon:HG003_chrY_T0000720:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9161822	9164578	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_G0000218;transcript_name=HG003_chrY_T0000721;gene_name=TSPY3;ID=HG003_chrY_T0000721;Name=TSPY3
HG003_chrY	CAT	exon	9161822	9162307	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000721;transcript_name=HG003_chrY_T0000721;gene_name=TSPY3;ID=exon:HG003_chrY_T0000721:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162308	9162914	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000721;transcript_name=HG003_chrY_T0000721;gene_name=TSPY3;ID=intron:HG003_chrY_T0000721:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9162915	9162992	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000721;transcript_name=HG003_chrY_T0000721;gene_name=TSPY3;ID=exon:HG003_chrY_T0000721:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9162993	9163120	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000721;transcript_name=HG003_chrY_T0000721;gene_name=TSPY3;ID=intron:HG003_chrY_T0000721:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163121	9163667	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000721;transcript_name=HG003_chrY_T0000721;gene_name=TSPY3;ID=exon:HG003_chrY_T0000721:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163668	9163794	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000721;transcript_name=HG003_chrY_T0000721;gene_name=TSPY3;ID=intron:HG003_chrY_T0000721:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163795	9164578	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000721;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000721;transcript_name=HG003_chrY_T0000721;gene_name=TSPY3;ID=exon:HG003_chrY_T0000721:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9163182	9164563	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_G0000218;transcript_name=HG003_chrY_T0000722;gene_name=TSPY3;ID=HG003_chrY_T0000722;Name=TSPY3
HG003_chrY	CAT	exon	9163182	9163479	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000722;transcript_name=HG003_chrY_T0000722;gene_name=TSPY3;ID=exon:HG003_chrY_T0000722:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163480	9163574	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000722;transcript_name=HG003_chrY_T0000722;gene_name=TSPY3;ID=intron:HG003_chrY_T0000722:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9163575	9163667	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000722;transcript_name=HG003_chrY_T0000722;gene_name=TSPY3;ID=exon:HG003_chrY_T0000722:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9163668	9164361	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000722;transcript_name=HG003_chrY_T0000722;gene_name=TSPY3;ID=intron:HG003_chrY_T0000722:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9164362	9164563	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000722;gene_id=HG003_chrY_G0000218;Parent=HG003_chrY_T0000722;transcript_name=HG003_chrY_T0000722;gene_name=TSPY3;ID=exon:HG003_chrY_T0000722:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9171776	9179462	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000290448.1_6;gene_id=HG003_chrY_G0000219;gene_biotype=lncRNA;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000219;Name=FAM197Y9
HG003_chrY	CAT	transcript	9171776	9179462	1000	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_G0000219;transcript_name=HG003_chrY_T0000723;gene_name=FAM197Y9;ID=HG003_chrY_T0000723;Name=FAM197Y9
HG003_chrY	CAT	exon	9171776	9173903	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000723;transcript_name=HG003_chrY_T0000723;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000723:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9173904	9177451	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000723;transcript_name=HG003_chrY_T0000723;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000723:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9177452	9177537	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000723;transcript_name=HG003_chrY_T0000723;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000723:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9177538	9179342	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000723;transcript_name=HG003_chrY_T0000723;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000723:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9179343	9179462	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000723;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000723;transcript_name=HG003_chrY_T0000723;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000723:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9173844	9179444	1000	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_G0000219;transcript_name=HG003_chrY_T0000724;gene_name=FAM197Y9;ID=HG003_chrY_T0000724;Name=FAM197Y9
HG003_chrY	CAT	exon	9173844	9173903	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000724;transcript_name=HG003_chrY_T0000724;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000724:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9173904	9177451	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000724;transcript_name=HG003_chrY_T0000724;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000724:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9177452	9177610	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000724;transcript_name=HG003_chrY_T0000724;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000724:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9177611	9179110	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000724;transcript_name=HG003_chrY_T0000724;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000724:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9179111	9179256	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000724;transcript_name=HG003_chrY_T0000724;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000724:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9179257	9179342	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000724;transcript_name=HG003_chrY_T0000724;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000724:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9179343	9179444	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000724;gene_id=HG003_chrY_G0000219;Parent=HG003_chrY_T0000724;transcript_name=HG003_chrY_T0000724;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000724:3;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9179111	9181104	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000234830.9_5;gene_id=HG003_chrY_G0000220;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000220;Name=FAM197Y9
HG003_chrY	CAT	transcript	9179111	9181104	1000	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_G0000220;transcript_name=HG003_chrY_T0000725;gene_name=FAM197Y9;ID=HG003_chrY_T0000725;Name=FAM197Y9
HG003_chrY	CAT	exon	9179111	9179256	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000725;transcript_name=HG003_chrY_T0000725;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000725:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9179257	9179368	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000725;transcript_name=HG003_chrY_T0000725;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000725:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9179369	9179452	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000725;transcript_name=HG003_chrY_T0000725;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000725:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9179453	9180794	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000725;transcript_name=HG003_chrY_T0000725;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000725:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9180795	9181104	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000725;gene_id=HG003_chrY_G0000220;Parent=HG003_chrY_T0000725;transcript_name=HG003_chrY_T0000725;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000725:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9182053	9184849	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;gene_id=HG003_chrY_G0000221;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000221;Name=TSPY3
HG003_chrY	CAT	transcript	9182053	9184849	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_G0000221;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=HG003_chrY_T0000726;Name=TSPY3
HG003_chrY	CAT	exon	9182053	9182584	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=exon:HG003_chrY_T0000726:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9182099	9182584	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000726:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9182099	9182101	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000726;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9182585	9183191	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=intron:HG003_chrY_T0000726:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183192	9183269	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=exon:HG003_chrY_T0000726:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183192	9183269	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000726:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183270	9183397	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=intron:HG003_chrY_T0000726:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183398	9183509	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=exon:HG003_chrY_T0000726:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183398	9183509	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000726:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183510	9183610	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=intron:HG003_chrY_T0000726:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183611	9183756	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=exon:HG003_chrY_T0000726:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183611	9183756	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000726:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183757	9183862	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=intron:HG003_chrY_T0000726:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183863	9183944	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=exon:HG003_chrY_T0000726:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183863	9183944	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000726:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183945	9184638	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=intron:HG003_chrY_T0000726:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9184639	9184849	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=exon:HG003_chrY_T0000726:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9184639	9184661	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000726:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9184659	9184661	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000726;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000726;transcript_name=HG003_chrY_T0000726;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000726;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9182099	9184661	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_G0000221;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=HG003_chrY_T0000727;Name=TSPY3
HG003_chrY	CAT	exon	9182099	9182185	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=exon:HG003_chrY_T0000727:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9182099	9182185	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000727:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9182099	9182101	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000727;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9182186	9182446	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=intron:HG003_chrY_T0000727:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9182447	9182584	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=exon:HG003_chrY_T0000727:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9182447	9182584	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000727:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9182585	9183191	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=intron:HG003_chrY_T0000727:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183192	9183269	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=exon:HG003_chrY_T0000727:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183192	9183269	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000727:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183270	9183397	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=intron:HG003_chrY_T0000727:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183398	9183509	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=exon:HG003_chrY_T0000727:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183398	9183509	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000727:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183510	9183610	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=intron:HG003_chrY_T0000727:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183611	9183756	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=exon:HG003_chrY_T0000727:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183611	9183756	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000727:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183757	9183862	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=intron:HG003_chrY_T0000727:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183863	9183944	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=exon:HG003_chrY_T0000727:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183863	9183944	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000727:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183945	9184638	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=intron:HG003_chrY_T0000727:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9184639	9184661	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=exon:HG003_chrY_T0000727:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9184639	9184661	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000727:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9184659	9184661	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000727;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000727;transcript_name=HG003_chrY_T0000727;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000727;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9182099	9184848	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_G0000221;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=HG003_chrY_T0000728;Name=TSPY3
HG003_chrY	CAT	exon	9182099	9182584	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=exon:HG003_chrY_T0000728:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9182099	9182584	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000728:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9182099	9182101	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000728;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9182585	9183191	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=intron:HG003_chrY_T0000728:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183192	9183269	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=exon:HG003_chrY_T0000728:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183192	9183269	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000728:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183270	9183397	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=intron:HG003_chrY_T0000728:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183398	9183509	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=exon:HG003_chrY_T0000728:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183398	9183509	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000728:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183510	9183610	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=intron:HG003_chrY_T0000728:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183611	9183756	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=exon:HG003_chrY_T0000728:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183611	9183756	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000728:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183757	9183851	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=intron:HG003_chrY_T0000728:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183852	9183944	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=exon:HG003_chrY_T0000728:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9183852	9183914	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000728:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9183912	9183914	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000728;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183945	9184638	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=intron:HG003_chrY_T0000728:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9184639	9184848	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000728;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000728;transcript_name=HG003_chrY_T0000728;gene_name=TSPY3;ID=exon:HG003_chrY_T0000728:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9182099	9184855	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_G0000221;transcript_name=HG003_chrY_T0000729;gene_name=TSPY3;ID=HG003_chrY_T0000729;Name=TSPY3
HG003_chrY	CAT	exon	9182099	9182584	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000729;transcript_name=HG003_chrY_T0000729;gene_name=TSPY3;ID=exon:HG003_chrY_T0000729:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9182585	9183191	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000729;transcript_name=HG003_chrY_T0000729;gene_name=TSPY3;ID=intron:HG003_chrY_T0000729:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183192	9183269	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000729;transcript_name=HG003_chrY_T0000729;gene_name=TSPY3;ID=exon:HG003_chrY_T0000729:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183270	9183397	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000729;transcript_name=HG003_chrY_T0000729;gene_name=TSPY3;ID=intron:HG003_chrY_T0000729:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183398	9183944	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000729;transcript_name=HG003_chrY_T0000729;gene_name=TSPY3;ID=exon:HG003_chrY_T0000729:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183945	9184071	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000729;transcript_name=HG003_chrY_T0000729;gene_name=TSPY3;ID=intron:HG003_chrY_T0000729:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9184072	9184855	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000729;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000729;transcript_name=HG003_chrY_T0000729;gene_name=TSPY3;ID=exon:HG003_chrY_T0000729:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9183459	9184840	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_G0000221;transcript_name=HG003_chrY_T0000730;gene_name=TSPY3;ID=HG003_chrY_T0000730;Name=TSPY3
HG003_chrY	CAT	exon	9183459	9183756	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000730;transcript_name=HG003_chrY_T0000730;gene_name=TSPY3;ID=exon:HG003_chrY_T0000730:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183757	9183851	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000730;transcript_name=HG003_chrY_T0000730;gene_name=TSPY3;ID=intron:HG003_chrY_T0000730:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9183852	9183944	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000730;transcript_name=HG003_chrY_T0000730;gene_name=TSPY3;ID=exon:HG003_chrY_T0000730:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9183945	9184638	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000730;transcript_name=HG003_chrY_T0000730;gene_name=TSPY3;ID=intron:HG003_chrY_T0000730:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9184639	9184840	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000730;gene_id=HG003_chrY_G0000221;Parent=HG003_chrY_T0000730;transcript_name=HG003_chrY_T0000730;gene_name=TSPY3;ID=exon:HG003_chrY_T0000730:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9193989	9199735	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000222;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000222;Name=FAM197Y5
HG003_chrY	CAT	transcript	9193989	9199735	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_G0000222;transcript_name=HG003_chrY_T0000731;gene_name=FAM197Y5;ID=HG003_chrY_T0000731;Name=FAM197Y5
HG003_chrY	CAT	exon	9193989	9194178	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000731;transcript_name=HG003_chrY_T0000731;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000731:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9194179	9197728	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000731;transcript_name=HG003_chrY_T0000731;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000731:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9197729	9197814	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000731;transcript_name=HG003_chrY_T0000731;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000731:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9197815	9199621	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000731;transcript_name=HG003_chrY_T0000731;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000731:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9199622	9199735	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000731;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000731;transcript_name=HG003_chrY_T0000731;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000731:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9194119	9199723	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_G0000222;transcript_name=HG003_chrY_T0000732;gene_name=FAM197Y5;ID=HG003_chrY_T0000732;Name=FAM197Y5
HG003_chrY	CAT	exon	9194119	9194178	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000732;transcript_name=HG003_chrY_T0000732;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000732:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9194179	9197728	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000732;transcript_name=HG003_chrY_T0000732;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000732:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9197729	9197887	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000732;transcript_name=HG003_chrY_T0000732;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000732:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9197888	9199389	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000732;transcript_name=HG003_chrY_T0000732;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000732:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9199390	9199535	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000732;transcript_name=HG003_chrY_T0000732;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000732:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9199536	9199621	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000732;transcript_name=HG003_chrY_T0000732;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000732:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9199622	9199723	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000732;gene_id=HG003_chrY_G0000222;Parent=HG003_chrY_T0000732;transcript_name=HG003_chrY_T0000732;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000732:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9199390	9201382	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_11;gene_id=HG003_chrY_G0000223;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000223;Name=FAM197Y5
HG003_chrY	CAT	transcript	9199390	9201382	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_G0000223;transcript_name=HG003_chrY_T0000733;gene_name=FAM197Y5;ID=HG003_chrY_T0000733;Name=FAM197Y5
HG003_chrY	CAT	exon	9199390	9199535	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000733;transcript_name=HG003_chrY_T0000733;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000733:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9199536	9201071	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000733;transcript_name=HG003_chrY_T0000733;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000733:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9201072	9201382	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_11;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_11;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000733;gene_id=HG003_chrY_G0000223;Parent=HG003_chrY_T0000733;transcript_name=HG003_chrY_T0000733;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000733:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9202336	9205132	.	+	.	source_gene_common_name=TSPY10;source_gene=ENSG00000236424.7;gene_id=HG003_chrY_G0000224;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff;ID=HG003_chrY_G0000224;Name=TSPY10
HG003_chrY	CAT	transcript	9202336	9205132	100	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_G0000224;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=HG003_chrY_T0000734;Name=TSPY10
HG003_chrY	CAT	exon	9202336	9202867	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=exon:HG003_chrY_T0000734:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9202382	9202867	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000734:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9202382	9202384	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000734;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9202868	9203474	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=intron:HG003_chrY_T0000734:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203475	9203552	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=exon:HG003_chrY_T0000734:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203475	9203552	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000734:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203553	9203680	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=intron:HG003_chrY_T0000734:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203681	9203792	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=exon:HG003_chrY_T0000734:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203681	9203792	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000734:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203793	9203893	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=intron:HG003_chrY_T0000734:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203894	9204039	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=exon:HG003_chrY_T0000734:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203894	9204039	.	+	2	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000734:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204040	9204145	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=intron:HG003_chrY_T0000734:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204146	9204227	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=exon:HG003_chrY_T0000734:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9204146	9204227	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000734:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204228	9204921	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=intron:HG003_chrY_T0000734:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204922	9205132	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=exon:HG003_chrY_T0000734:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9204922	9204944	.	+	2	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000734:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9204942	9204944	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000734;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000734;transcript_name=HG003_chrY_T0000734;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000734;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9202382	9205131	100	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_G0000224;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=HG003_chrY_T0000735;Name=TSPY10
HG003_chrY	CAT	exon	9202382	9202867	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=exon:HG003_chrY_T0000735:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9202382	9202867	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000735:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9202382	9202384	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000735;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9202868	9203474	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=intron:HG003_chrY_T0000735:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203475	9203552	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=exon:HG003_chrY_T0000735:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203475	9203552	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000735:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203553	9203680	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=intron:HG003_chrY_T0000735:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203681	9203792	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=exon:HG003_chrY_T0000735:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203681	9203792	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000735:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203793	9203893	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=intron:HG003_chrY_T0000735:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203894	9204039	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=exon:HG003_chrY_T0000735:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9203894	9204039	.	+	2	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000735:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204040	9204134	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=intron:HG003_chrY_T0000735:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204135	9204227	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=exon:HG003_chrY_T0000735:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9204135	9204197	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000735:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9204195	9204197	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000735;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204228	9204921	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=intron:HG003_chrY_T0000735:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204922	9205131	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000735;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000735;transcript_name=HG003_chrY_T0000735;gene_name=TSPY10;ID=exon:HG003_chrY_T0000735:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9202382	9205138	1000	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_G0000224;transcript_name=HG003_chrY_T0000736;gene_name=TSPY10;ID=HG003_chrY_T0000736;Name=TSPY10
HG003_chrY	CAT	exon	9202382	9202867	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000736;transcript_name=HG003_chrY_T0000736;gene_name=TSPY10;ID=exon:HG003_chrY_T0000736:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9202868	9203474	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000736;transcript_name=HG003_chrY_T0000736;gene_name=TSPY10;ID=intron:HG003_chrY_T0000736:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203475	9203552	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000736;transcript_name=HG003_chrY_T0000736;gene_name=TSPY10;ID=exon:HG003_chrY_T0000736:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9203553	9203680	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000736;transcript_name=HG003_chrY_T0000736;gene_name=TSPY10;ID=intron:HG003_chrY_T0000736:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9203681	9204227	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000736;transcript_name=HG003_chrY_T0000736;gene_name=TSPY10;ID=exon:HG003_chrY_T0000736:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204228	9204354	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000736;transcript_name=HG003_chrY_T0000736;gene_name=TSPY10;ID=intron:HG003_chrY_T0000736:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204355	9205138	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000736;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000736;transcript_name=HG003_chrY_T0000736;gene_name=TSPY10;ID=exon:HG003_chrY_T0000736:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9203742	9205123	1000	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_G0000224;transcript_name=HG003_chrY_T0000737;gene_name=TSPY10;ID=HG003_chrY_T0000737;Name=TSPY10
HG003_chrY	CAT	exon	9203742	9204039	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000737;transcript_name=HG003_chrY_T0000737;gene_name=TSPY10;ID=exon:HG003_chrY_T0000737:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204040	9204145	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000737;transcript_name=HG003_chrY_T0000737;gene_name=TSPY10;ID=intron:HG003_chrY_T0000737:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204146	9204227	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000737;transcript_name=HG003_chrY_T0000737;gene_name=TSPY10;ID=exon:HG003_chrY_T0000737:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9204228	9204921	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000737;transcript_name=HG003_chrY_T0000737;gene_name=TSPY10;ID=intron:HG003_chrY_T0000737:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9204922	9205123	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000737;gene_id=HG003_chrY_G0000224;Parent=HG003_chrY_T0000737;transcript_name=HG003_chrY_T0000737;gene_name=TSPY10;ID=exon:HG003_chrY_T0000737:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9214263	9219998	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000225;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000225;Name=FAM197Y5
HG003_chrY	CAT	transcript	9214263	9219998	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_G0000225;transcript_name=HG003_chrY_T0000738;gene_name=FAM197Y5;ID=HG003_chrY_T0000738;Name=FAM197Y5
HG003_chrY	CAT	exon	9214263	9214452	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000738;transcript_name=HG003_chrY_T0000738;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000738:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9214453	9218001	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000738;transcript_name=HG003_chrY_T0000738;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000738:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9218002	9218087	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000738;transcript_name=HG003_chrY_T0000738;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000738:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9218088	9219884	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000738;transcript_name=HG003_chrY_T0000738;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000738:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9219885	9219998	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000738;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000738;transcript_name=HG003_chrY_T0000738;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000738:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9214393	9219986	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_G0000225;transcript_name=HG003_chrY_T0000739;gene_name=FAM197Y5;ID=HG003_chrY_T0000739;Name=FAM197Y5
HG003_chrY	CAT	exon	9214393	9214452	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000739;transcript_name=HG003_chrY_T0000739;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000739:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9214453	9218001	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000739;transcript_name=HG003_chrY_T0000739;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000739:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9218002	9218160	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000739;transcript_name=HG003_chrY_T0000739;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000739:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9218161	9219652	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000739;transcript_name=HG003_chrY_T0000739;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000739:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9219653	9219798	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000739;transcript_name=HG003_chrY_T0000739;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000739:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9219799	9219884	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000739;transcript_name=HG003_chrY_T0000739;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000739:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9219885	9219986	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000739;gene_id=HG003_chrY_G0000225;Parent=HG003_chrY_T0000739;transcript_name=HG003_chrY_T0000739;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000739:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9219653	9221645	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_9;gene_id=HG003_chrY_G0000226;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000226;Name=FAM197Y5
HG003_chrY	CAT	transcript	9219653	9221645	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_G0000226;transcript_name=HG003_chrY_T0000740;gene_name=FAM197Y5;ID=HG003_chrY_T0000740;Name=FAM197Y5
HG003_chrY	CAT	exon	9219653	9219798	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000740;transcript_name=HG003_chrY_T0000740;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000740:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9219799	9221334	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000740;transcript_name=HG003_chrY_T0000740;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000740:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9221335	9221645	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000740;gene_id=HG003_chrY_G0000226;Parent=HG003_chrY_T0000740;transcript_name=HG003_chrY_T0000740;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000740:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9222599	9225413	.	+	.	source_gene_common_name=TSPY4;source_gene=ENSG00000233803.9;gene_id=HG003_chrY_G0000227;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff;ID=HG003_chrY_G0000227;Name=TSPY4
HG003_chrY	CAT	transcript	9222599	9225292	100	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_G0000227;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=HG003_chrY_T0000741;Name=TSPY4
HG003_chrY	CAT	exon	9222599	9222731	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=exon:HG003_chrY_T0000741:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9222645	9222731	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000741:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9222645	9222647	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000741;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9222732	9223010	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=intron:HG003_chrY_T0000741:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223011	9223148	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=exon:HG003_chrY_T0000741:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223011	9223148	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000741:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223149	9223755	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=intron:HG003_chrY_T0000741:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223756	9223833	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=exon:HG003_chrY_T0000741:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223756	9223833	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000741:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223834	9223961	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=intron:HG003_chrY_T0000741:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223962	9224073	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=exon:HG003_chrY_T0000741:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223962	9224073	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000741:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224074	9224174	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=intron:HG003_chrY_T0000741:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224175	9224320	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=exon:HG003_chrY_T0000741:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9224175	9224320	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000741:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224321	9224426	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=intron:HG003_chrY_T0000741:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224427	9224508	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=exon:HG003_chrY_T0000741:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9224427	9224508	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000741:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224509	9225202	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=intron:HG003_chrY_T0000741:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9225203	9225292	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=exon:HG003_chrY_T0000741:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9225203	9225225	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000741:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9225223	9225225	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000741;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000741;transcript_name=HG003_chrY_T0000741;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000741;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9222599	9225413	100	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_G0000227;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=HG003_chrY_T0000742;Name=TSPY4
HG003_chrY	CAT	exon	9222599	9223148	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=exon:HG003_chrY_T0000742:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9222645	9223148	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000742:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9222645	9222647	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000742;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223149	9223755	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=intron:HG003_chrY_T0000742:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223756	9223833	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=exon:HG003_chrY_T0000742:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223756	9223833	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000742:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223834	9223961	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=intron:HG003_chrY_T0000742:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223962	9224073	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=exon:HG003_chrY_T0000742:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223962	9224073	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000742:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224074	9224174	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=intron:HG003_chrY_T0000742:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224175	9224320	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=exon:HG003_chrY_T0000742:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9224175	9224320	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000742:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224321	9224426	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=intron:HG003_chrY_T0000742:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224427	9224508	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=exon:HG003_chrY_T0000742:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9224427	9224508	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000742:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224509	9225202	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=intron:HG003_chrY_T0000742:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9225203	9225413	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=exon:HG003_chrY_T0000742:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9225203	9225225	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000742:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9225223	9225225	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000742;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000742;transcript_name=HG003_chrY_T0000742;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000742;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9222645	9225412	100	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_G0000227;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=HG003_chrY_T0000743;Name=TSPY4
HG003_chrY	CAT	exon	9222645	9223148	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=exon:HG003_chrY_T0000743:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9222645	9223148	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000743:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9222645	9222647	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000743;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223149	9223755	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=intron:HG003_chrY_T0000743:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223756	9223833	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=exon:HG003_chrY_T0000743:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223756	9223833	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000743:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223834	9223961	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=intron:HG003_chrY_T0000743:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223962	9224073	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=exon:HG003_chrY_T0000743:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9223962	9224073	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000743:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224074	9224174	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=intron:HG003_chrY_T0000743:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224175	9224320	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=exon:HG003_chrY_T0000743:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9224175	9224320	.	+	2	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000743:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224321	9224415	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=intron:HG003_chrY_T0000743:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224416	9224508	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=exon:HG003_chrY_T0000743:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9224416	9224478	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000743:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9224476	9224478	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000743;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224509	9225202	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=intron:HG003_chrY_T0000743:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9225203	9225412	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000743;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000743;transcript_name=HG003_chrY_T0000743;gene_name=TSPY4;ID=exon:HG003_chrY_T0000743:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9222645	9225419	1000	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_G0000227;transcript_name=HG003_chrY_T0000744;gene_name=TSPY4;ID=HG003_chrY_T0000744;Name=TSPY4
HG003_chrY	CAT	exon	9222645	9223148	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000744;transcript_name=HG003_chrY_T0000744;gene_name=TSPY4;ID=exon:HG003_chrY_T0000744:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223149	9223755	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000744;transcript_name=HG003_chrY_T0000744;gene_name=TSPY4;ID=intron:HG003_chrY_T0000744:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223756	9223833	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000744;transcript_name=HG003_chrY_T0000744;gene_name=TSPY4;ID=exon:HG003_chrY_T0000744:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9223834	9223961	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000744;transcript_name=HG003_chrY_T0000744;gene_name=TSPY4;ID=intron:HG003_chrY_T0000744:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9223962	9224508	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000744;transcript_name=HG003_chrY_T0000744;gene_name=TSPY4;ID=exon:HG003_chrY_T0000744:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224509	9224635	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000744;transcript_name=HG003_chrY_T0000744;gene_name=TSPY4;ID=intron:HG003_chrY_T0000744:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224636	9225419	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000744;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000744;transcript_name=HG003_chrY_T0000744;gene_name=TSPY4;ID=exon:HG003_chrY_T0000744:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9224023	9225404	1000	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_G0000227;transcript_name=HG003_chrY_T0000745;gene_name=TSPY4;ID=HG003_chrY_T0000745;Name=TSPY4
HG003_chrY	CAT	exon	9224023	9224320	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000745;transcript_name=HG003_chrY_T0000745;gene_name=TSPY4;ID=exon:HG003_chrY_T0000745:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224321	9224415	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000745;transcript_name=HG003_chrY_T0000745;gene_name=TSPY4;ID=intron:HG003_chrY_T0000745:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9224416	9224508	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000745;transcript_name=HG003_chrY_T0000745;gene_name=TSPY4;ID=exon:HG003_chrY_T0000745:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9224509	9225202	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000745;transcript_name=HG003_chrY_T0000745;gene_name=TSPY4;ID=intron:HG003_chrY_T0000745:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9225203	9225404	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000745;gene_id=HG003_chrY_G0000227;Parent=HG003_chrY_T0000745;transcript_name=HG003_chrY_T0000745;gene_name=TSPY4;ID=exon:HG003_chrY_T0000745:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9234572	9240313	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000228;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000228;Name=FAM197Y5
HG003_chrY	CAT	transcript	9234572	9240313	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_G0000228;transcript_name=HG003_chrY_T0000746;gene_name=FAM197Y5;ID=HG003_chrY_T0000746;Name=FAM197Y5
HG003_chrY	CAT	exon	9234572	9234761	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000746;transcript_name=HG003_chrY_T0000746;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000746:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9234762	9238310	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000746;transcript_name=HG003_chrY_T0000746;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000746:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9238311	9238396	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000746;transcript_name=HG003_chrY_T0000746;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000746:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9238397	9240199	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000746;transcript_name=HG003_chrY_T0000746;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000746:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9240200	9240313	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000746;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000746;transcript_name=HG003_chrY_T0000746;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000746:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9234702	9240301	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_G0000228;transcript_name=HG003_chrY_T0000747;gene_name=FAM197Y5;ID=HG003_chrY_T0000747;Name=FAM197Y5
HG003_chrY	CAT	exon	9234702	9234761	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000747;transcript_name=HG003_chrY_T0000747;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000747:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9234762	9238310	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000747;transcript_name=HG003_chrY_T0000747;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000747:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9238311	9238469	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000747;transcript_name=HG003_chrY_T0000747;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000747:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9238470	9239967	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000747;transcript_name=HG003_chrY_T0000747;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000747:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9239968	9240113	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000747;transcript_name=HG003_chrY_T0000747;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000747:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9240114	9240199	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000747;transcript_name=HG003_chrY_T0000747;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000747:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9240200	9240301	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000747;gene_id=HG003_chrY_G0000228;Parent=HG003_chrY_T0000747;transcript_name=HG003_chrY_T0000747;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000747:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9239968	9241960	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_1;gene_id=HG003_chrY_G0000229;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000229;Name=FAM197Y5
HG003_chrY	CAT	transcript	9239968	9241960	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_G0000229;transcript_name=HG003_chrY_T0000748;gene_name=FAM197Y5;ID=HG003_chrY_T0000748;Name=FAM197Y5
HG003_chrY	CAT	exon	9239968	9240113	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000748;transcript_name=HG003_chrY_T0000748;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000748:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9240114	9241649	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000748;transcript_name=HG003_chrY_T0000748;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000748:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9241650	9241960	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000748;gene_id=HG003_chrY_G0000229;Parent=HG003_chrY_T0000748;transcript_name=HG003_chrY_T0000748;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000748:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9242914	9245710	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;gene_id=HG003_chrY_G0000230;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000230;Name=TSPY3
HG003_chrY	CAT	transcript	9242914	9245710	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_G0000230;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=HG003_chrY_T0000749;Name=TSPY3
HG003_chrY	CAT	exon	9242914	9243445	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=exon:HG003_chrY_T0000749:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9242960	9243445	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000749:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9242960	9242962	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000749;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9243446	9244052	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=intron:HG003_chrY_T0000749:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244053	9244130	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=exon:HG003_chrY_T0000749:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244053	9244130	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000749:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244131	9244258	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=intron:HG003_chrY_T0000749:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244259	9244370	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=exon:HG003_chrY_T0000749:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244259	9244370	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000749:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244371	9244471	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=intron:HG003_chrY_T0000749:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244472	9244617	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=exon:HG003_chrY_T0000749:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244472	9244617	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000749:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244618	9244723	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=intron:HG003_chrY_T0000749:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244724	9244805	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=exon:HG003_chrY_T0000749:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244724	9244805	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000749:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244806	9245499	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=intron:HG003_chrY_T0000749:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9245500	9245710	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=exon:HG003_chrY_T0000749:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9245500	9245522	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000749:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9245520	9245522	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000749;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000749;transcript_name=HG003_chrY_T0000749;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000749;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9242960	9245522	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_G0000230;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=HG003_chrY_T0000750;Name=TSPY3
HG003_chrY	CAT	exon	9242960	9243046	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=exon:HG003_chrY_T0000750:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9242960	9243046	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000750:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9242960	9242962	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000750;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9243047	9243307	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=intron:HG003_chrY_T0000750:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9243308	9243445	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=exon:HG003_chrY_T0000750:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9243308	9243445	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000750:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9243446	9244052	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=intron:HG003_chrY_T0000750:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244053	9244130	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=exon:HG003_chrY_T0000750:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244053	9244130	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000750:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244131	9244258	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=intron:HG003_chrY_T0000750:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244259	9244370	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=exon:HG003_chrY_T0000750:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244259	9244370	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000750:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244371	9244471	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=intron:HG003_chrY_T0000750:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244472	9244617	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=exon:HG003_chrY_T0000750:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244472	9244617	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000750:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244618	9244723	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=intron:HG003_chrY_T0000750:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244724	9244805	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=exon:HG003_chrY_T0000750:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244724	9244805	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000750:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244806	9245499	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=intron:HG003_chrY_T0000750:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9245500	9245522	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=exon:HG003_chrY_T0000750:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9245500	9245522	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000750:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9245520	9245522	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000750;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000750;transcript_name=HG003_chrY_T0000750;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000750;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9242960	9245709	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_G0000230;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=HG003_chrY_T0000751;Name=TSPY3
HG003_chrY	CAT	exon	9242960	9243445	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=exon:HG003_chrY_T0000751:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9242960	9243445	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000751:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9242960	9242962	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000751;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9243446	9244052	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=intron:HG003_chrY_T0000751:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244053	9244130	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=exon:HG003_chrY_T0000751:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244053	9244130	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000751:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244131	9244258	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=intron:HG003_chrY_T0000751:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244259	9244370	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=exon:HG003_chrY_T0000751:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244259	9244370	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000751:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244371	9244471	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=intron:HG003_chrY_T0000751:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244472	9244617	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=exon:HG003_chrY_T0000751:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244472	9244617	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000751:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244618	9244712	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=intron:HG003_chrY_T0000751:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244713	9244805	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=exon:HG003_chrY_T0000751:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9244713	9244775	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000751:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9244773	9244775	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000751;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244806	9245499	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=intron:HG003_chrY_T0000751:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9245500	9245709	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000751;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000751;transcript_name=HG003_chrY_T0000751;gene_name=TSPY3;ID=exon:HG003_chrY_T0000751:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9242960	9245716	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_G0000230;transcript_name=HG003_chrY_T0000752;gene_name=TSPY3;ID=HG003_chrY_T0000752;Name=TSPY3
HG003_chrY	CAT	exon	9242960	9243445	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000752;transcript_name=HG003_chrY_T0000752;gene_name=TSPY3;ID=exon:HG003_chrY_T0000752:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9243446	9244052	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000752;transcript_name=HG003_chrY_T0000752;gene_name=TSPY3;ID=intron:HG003_chrY_T0000752:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244053	9244130	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000752;transcript_name=HG003_chrY_T0000752;gene_name=TSPY3;ID=exon:HG003_chrY_T0000752:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244131	9244258	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000752;transcript_name=HG003_chrY_T0000752;gene_name=TSPY3;ID=intron:HG003_chrY_T0000752:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244259	9244805	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000752;transcript_name=HG003_chrY_T0000752;gene_name=TSPY3;ID=exon:HG003_chrY_T0000752:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244806	9244932	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000752;transcript_name=HG003_chrY_T0000752;gene_name=TSPY3;ID=intron:HG003_chrY_T0000752:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244933	9245716	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000752;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000752;transcript_name=HG003_chrY_T0000752;gene_name=TSPY3;ID=exon:HG003_chrY_T0000752:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9244320	9245701	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_G0000230;transcript_name=HG003_chrY_T0000753;gene_name=TSPY3;ID=HG003_chrY_T0000753;Name=TSPY3
HG003_chrY	CAT	exon	9244320	9244617	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000753;transcript_name=HG003_chrY_T0000753;gene_name=TSPY3;ID=exon:HG003_chrY_T0000753:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244618	9244712	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000753;transcript_name=HG003_chrY_T0000753;gene_name=TSPY3;ID=intron:HG003_chrY_T0000753:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9244713	9244805	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000753;transcript_name=HG003_chrY_T0000753;gene_name=TSPY3;ID=exon:HG003_chrY_T0000753:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9244806	9245499	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000753;transcript_name=HG003_chrY_T0000753;gene_name=TSPY3;ID=intron:HG003_chrY_T0000753:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9245500	9245701	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000753;gene_id=HG003_chrY_G0000230;Parent=HG003_chrY_T0000753;transcript_name=HG003_chrY_T0000753;gene_name=TSPY3;ID=exon:HG003_chrY_T0000753:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9252906	9260796	.	-	.	source_gene_common_name=FAM197Y7;source_gene=ENSG00000228383.7;gene_id=HG003_chrY_G0000231;gene_biotype=lncRNA;gene_name=FAM197Y7;gene_sources=liftoff;ID=HG003_chrY_G0000231;Name=FAM197Y7
HG003_chrY	CAT	transcript	9252906	9260796	1000	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_G0000231;transcript_name=HG003_chrY_T0000754;gene_name=FAM197Y7;ID=HG003_chrY_T0000754;Name=FAM197Y7
HG003_chrY	CAT	exon	9252906	9255029	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000754;transcript_name=HG003_chrY_T0000754;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000754:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9255030	9258580	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000754;transcript_name=HG003_chrY_T0000754;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000754:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9258581	9258666	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000754;transcript_name=HG003_chrY_T0000754;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000754:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9258667	9260475	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000754;transcript_name=HG003_chrY_T0000754;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000754:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9260476	9260585	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000754;transcript_name=HG003_chrY_T0000754;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000754:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9260586	9260781	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000754;transcript_name=HG003_chrY_T0000754;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000754:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9260782	9260796	.	-	.	source_transcript=ENST00000433321.5;source_transcript_name=FAM197Y7-201;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433321.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433321.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000754;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000754;transcript_name=HG003_chrY_T0000754;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000754:3;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9254970	9260577	1000	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_G0000231;transcript_name=HG003_chrY_T0000755;gene_name=FAM197Y7;ID=HG003_chrY_T0000755;Name=FAM197Y7
HG003_chrY	CAT	exon	9254970	9255029	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000755;transcript_name=HG003_chrY_T0000755;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000755:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9255030	9258580	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000755;transcript_name=HG003_chrY_T0000755;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000755:0;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9258581	9258739	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000755;transcript_name=HG003_chrY_T0000755;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000755:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9258740	9260243	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000755;transcript_name=HG003_chrY_T0000755;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000755:1;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9260244	9260389	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000755;transcript_name=HG003_chrY_T0000755;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000755:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9260390	9260475	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000755;transcript_name=HG003_chrY_T0000755;gene_name=FAM197Y7;ID=intron:HG003_chrY_T0000755:2;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9260476	9260577	.	-	.	source_transcript=ENST00000436801.5;source_transcript_name=FAM197Y7-202;source_gene=ENSG00000228383.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228383.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436801.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000436801.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y7;transcript_id=HG003_chrY_T0000755;gene_id=HG003_chrY_G0000231;Parent=HG003_chrY_T0000755;transcript_name=HG003_chrY_T0000755;gene_name=FAM197Y7;ID=exon:HG003_chrY_T0000755:3;Name=FAM197Y7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9260244	9262236	.	-	.	source_gene_common_name=ENSG00000286120;source_gene=ENSG00000286120.1;gene_id=HG003_chrY_G0000232;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000286120;gene_sources=liftoff;ID=HG003_chrY_G0000232;Name=ENSG00000286120
HG003_chrY	CAT	transcript	9260244	9262236	1000	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_G0000232;transcript_name=HG003_chrY_T0000756;gene_name=ENSG00000286120;ID=HG003_chrY_T0000756;Name=ENSG00000286120
HG003_chrY	CAT	exon	9260244	9260389	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_T0000756;transcript_name=HG003_chrY_T0000756;gene_name=ENSG00000286120;ID=exon:HG003_chrY_T0000756:0;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9260390	9261925	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_T0000756;transcript_name=HG003_chrY_T0000756;gene_name=ENSG00000286120;ID=intron:HG003_chrY_T0000756:0;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9261926	9262236	.	-	.	source_transcript=ENST00000432892.3;source_transcript_name=ENST00000432892;source_gene=ENSG00000286120.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286120.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432892.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000432892.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286120;transcript_id=HG003_chrY_T0000756;gene_id=HG003_chrY_G0000232;Parent=HG003_chrY_T0000756;transcript_name=HG003_chrY_T0000756;gene_name=ENSG00000286120;ID=exon:HG003_chrY_T0000756:1;Name=ENSG00000286120;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9263190	9265986	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;gene_id=HG003_chrY_G0000233;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000233;Name=TSPY3
HG003_chrY	CAT	transcript	9263190	9265986	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_G0000233;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=HG003_chrY_T0000757;Name=TSPY3
HG003_chrY	CAT	exon	9263190	9263721	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=exon:HG003_chrY_T0000757:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9263236	9263721	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000757:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9263236	9263238	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000757;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9263722	9264328	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=intron:HG003_chrY_T0000757:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264329	9264406	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=exon:HG003_chrY_T0000757:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264329	9264406	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000757:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264407	9264534	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=intron:HG003_chrY_T0000757:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264535	9264646	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=exon:HG003_chrY_T0000757:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264535	9264646	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000757:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264647	9264747	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=intron:HG003_chrY_T0000757:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264748	9264893	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=exon:HG003_chrY_T0000757:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264748	9264893	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000757:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264894	9264999	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=intron:HG003_chrY_T0000757:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265000	9265081	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=exon:HG003_chrY_T0000757:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9265000	9265081	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000757:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9265082	9265775	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=intron:HG003_chrY_T0000757:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265776	9265986	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=exon:HG003_chrY_T0000757:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9265776	9265798	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000757:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9265796	9265798	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000757;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000757;transcript_name=HG003_chrY_T0000757;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000757;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9263236	9265985	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_G0000233;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=HG003_chrY_T0000758;Name=TSPY3
HG003_chrY	CAT	exon	9263236	9263721	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=exon:HG003_chrY_T0000758:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9263236	9263721	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000758:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9263236	9263238	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000758;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9263722	9264328	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=intron:HG003_chrY_T0000758:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264329	9264406	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=exon:HG003_chrY_T0000758:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264329	9264406	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000758:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264407	9264534	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=intron:HG003_chrY_T0000758:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264535	9264646	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=exon:HG003_chrY_T0000758:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264535	9264646	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000758:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264647	9264747	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=intron:HG003_chrY_T0000758:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264748	9264893	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=exon:HG003_chrY_T0000758:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264748	9264893	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000758:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264894	9264988	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=intron:HG003_chrY_T0000758:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264989	9265081	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=exon:HG003_chrY_T0000758:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264989	9265051	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000758:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9265049	9265051	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000758;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9265082	9265775	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=intron:HG003_chrY_T0000758:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265776	9265985	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000758;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000758;transcript_name=HG003_chrY_T0000758;gene_name=TSPY3;ID=exon:HG003_chrY_T0000758:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9263236	9265798	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_G0000233;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=HG003_chrY_T0000759;Name=TSPY3
HG003_chrY	CAT	exon	9263236	9263322	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=exon:HG003_chrY_T0000759:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9263236	9263322	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000759:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9263236	9263238	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000759;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9263323	9263583	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=intron:HG003_chrY_T0000759:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9263584	9263721	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=exon:HG003_chrY_T0000759:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9263584	9263721	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000759:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9263722	9264328	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=intron:HG003_chrY_T0000759:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264329	9264406	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=exon:HG003_chrY_T0000759:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264329	9264406	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000759:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264407	9264534	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=intron:HG003_chrY_T0000759:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264535	9264646	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=exon:HG003_chrY_T0000759:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264535	9264646	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000759:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264647	9264747	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=intron:HG003_chrY_T0000759:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264748	9264893	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=exon:HG003_chrY_T0000759:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9264748	9264893	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000759:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264894	9264999	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=intron:HG003_chrY_T0000759:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265000	9265081	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=exon:HG003_chrY_T0000759:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9265000	9265081	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000759:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9265082	9265775	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=intron:HG003_chrY_T0000759:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265776	9265798	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=exon:HG003_chrY_T0000759:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9265776	9265798	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000759:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9265796	9265798	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000759;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000759;transcript_name=HG003_chrY_T0000759;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000759;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9263236	9265992	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_G0000233;transcript_name=HG003_chrY_T0000760;gene_name=TSPY3;ID=HG003_chrY_T0000760;Name=TSPY3
HG003_chrY	CAT	exon	9263236	9263721	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000760;transcript_name=HG003_chrY_T0000760;gene_name=TSPY3;ID=exon:HG003_chrY_T0000760:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9263722	9264328	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000760;transcript_name=HG003_chrY_T0000760;gene_name=TSPY3;ID=intron:HG003_chrY_T0000760:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264329	9264406	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000760;transcript_name=HG003_chrY_T0000760;gene_name=TSPY3;ID=exon:HG003_chrY_T0000760:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264407	9264534	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000760;transcript_name=HG003_chrY_T0000760;gene_name=TSPY3;ID=intron:HG003_chrY_T0000760:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264535	9265081	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000760;transcript_name=HG003_chrY_T0000760;gene_name=TSPY3;ID=exon:HG003_chrY_T0000760:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9265082	9265208	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000760;transcript_name=HG003_chrY_T0000760;gene_name=TSPY3;ID=intron:HG003_chrY_T0000760:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265209	9265992	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000760;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000760;transcript_name=HG003_chrY_T0000760;gene_name=TSPY3;ID=exon:HG003_chrY_T0000760:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9264596	9265977	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_G0000233;transcript_name=HG003_chrY_T0000761;gene_name=TSPY3;ID=HG003_chrY_T0000761;Name=TSPY3
HG003_chrY	CAT	exon	9264596	9264893	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000761;transcript_name=HG003_chrY_T0000761;gene_name=TSPY3;ID=exon:HG003_chrY_T0000761:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9264894	9264988	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000761;transcript_name=HG003_chrY_T0000761;gene_name=TSPY3;ID=intron:HG003_chrY_T0000761:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9264989	9265081	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000761;transcript_name=HG003_chrY_T0000761;gene_name=TSPY3;ID=exon:HG003_chrY_T0000761:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9265082	9265775	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000761;transcript_name=HG003_chrY_T0000761;gene_name=TSPY3;ID=intron:HG003_chrY_T0000761:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9265776	9265977	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000761;gene_id=HG003_chrY_G0000233;Parent=HG003_chrY_T0000761;transcript_name=HG003_chrY_T0000761;gene_name=TSPY3;ID=exon:HG003_chrY_T0000761:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9273190	9280876	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000290448.1_7;gene_id=HG003_chrY_G0000234;gene_biotype=lncRNA;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000234;Name=FAM197Y9
HG003_chrY	CAT	transcript	9273190	9280876	1000	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000762;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_G0000234;transcript_name=HG003_chrY_T0000762;gene_name=FAM197Y9;ID=HG003_chrY_T0000762;Name=FAM197Y9
HG003_chrY	CAT	exon	9273190	9275317	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000762;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000762;transcript_name=HG003_chrY_T0000762;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000762:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9275318	9278865	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000762;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000762;transcript_name=HG003_chrY_T0000762;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000762:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9278866	9278951	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000762;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000762;transcript_name=HG003_chrY_T0000762;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000762:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9278952	9280756	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000762;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000762;transcript_name=HG003_chrY_T0000762;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000762:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9280757	9280876	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000762;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000762;transcript_name=HG003_chrY_T0000762;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000762:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9275258	9280858	1000	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_G0000234;transcript_name=HG003_chrY_T0000763;gene_name=FAM197Y9;ID=HG003_chrY_T0000763;Name=FAM197Y9
HG003_chrY	CAT	exon	9275258	9275317	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000763;transcript_name=HG003_chrY_T0000763;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000763:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9275318	9278865	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000763;transcript_name=HG003_chrY_T0000763;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000763:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9278866	9279024	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000763;transcript_name=HG003_chrY_T0000763;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000763:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9279025	9280524	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000763;transcript_name=HG003_chrY_T0000763;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000763:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9280525	9280670	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000763;transcript_name=HG003_chrY_T0000763;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000763:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9280671	9280756	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000763;transcript_name=HG003_chrY_T0000763;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000763:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9280757	9280858	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000763;gene_id=HG003_chrY_G0000234;Parent=HG003_chrY_T0000763;transcript_name=HG003_chrY_T0000763;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000763:3;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9280525	9282518	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000234830.9_2;gene_id=HG003_chrY_G0000235;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000235;Name=FAM197Y9
HG003_chrY	CAT	transcript	9280525	9282518	1000	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000235;Parent=HG003_chrY_G0000235;transcript_name=HG003_chrY_T0000764;gene_name=FAM197Y9;ID=HG003_chrY_T0000764;Name=FAM197Y9
HG003_chrY	CAT	exon	9280525	9280670	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000235;Parent=HG003_chrY_T0000764;transcript_name=HG003_chrY_T0000764;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000764:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9280671	9280782	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000235;Parent=HG003_chrY_T0000764;transcript_name=HG003_chrY_T0000764;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000764:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9280783	9280866	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000235;Parent=HG003_chrY_T0000764;transcript_name=HG003_chrY_T0000764;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000764:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9280867	9282208	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000235;Parent=HG003_chrY_T0000764;transcript_name=HG003_chrY_T0000764;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000764:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9282209	9282518	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000764;gene_id=HG003_chrY_G0000235;Parent=HG003_chrY_T0000764;transcript_name=HG003_chrY_T0000764;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000764:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9283467	9286263	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;gene_id=HG003_chrY_G0000236;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000236;Name=TSPY3
HG003_chrY	CAT	transcript	9283467	9286263	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_G0000236;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=HG003_chrY_T0000765;Name=TSPY3
HG003_chrY	CAT	exon	9283467	9283998	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=exon:HG003_chrY_T0000765:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9283513	9283998	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000765:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9283513	9283515	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000765;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9283999	9284605	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=intron:HG003_chrY_T0000765:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284606	9284683	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=exon:HG003_chrY_T0000765:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9284606	9284683	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000765:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284684	9284811	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=intron:HG003_chrY_T0000765:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284812	9284923	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=exon:HG003_chrY_T0000765:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9284812	9284923	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000765:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284924	9285024	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=intron:HG003_chrY_T0000765:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285025	9285170	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=exon:HG003_chrY_T0000765:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9285025	9285170	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000765:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285171	9285276	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=intron:HG003_chrY_T0000765:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285277	9285358	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=exon:HG003_chrY_T0000765:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9285277	9285358	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000765:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285359	9286052	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=intron:HG003_chrY_T0000765:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9286053	9286263	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=exon:HG003_chrY_T0000765:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9286053	9286075	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000765:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9286073	9286075	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000765;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000765;transcript_name=HG003_chrY_T0000765;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000765;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9283513	9286075	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_G0000236;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=HG003_chrY_T0000766;Name=TSPY3
HG003_chrY	CAT	exon	9283513	9283599	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=exon:HG003_chrY_T0000766:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9283513	9283599	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000766:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9283513	9283515	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000766;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9283600	9283860	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=intron:HG003_chrY_T0000766:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9283861	9283998	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=exon:HG003_chrY_T0000766:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9283861	9283998	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000766:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9283999	9284605	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=intron:HG003_chrY_T0000766:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284606	9284683	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=exon:HG003_chrY_T0000766:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9284606	9284683	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000766:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284684	9284811	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=intron:HG003_chrY_T0000766:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284812	9284923	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=exon:HG003_chrY_T0000766:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9284812	9284923	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000766:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284924	9285024	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=intron:HG003_chrY_T0000766:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285025	9285170	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=exon:HG003_chrY_T0000766:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9285025	9285170	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000766:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285171	9285276	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=intron:HG003_chrY_T0000766:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285277	9285358	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=exon:HG003_chrY_T0000766:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9285277	9285358	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000766:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285359	9286052	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=intron:HG003_chrY_T0000766:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9286053	9286075	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=exon:HG003_chrY_T0000766:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9286053	9286075	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000766:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9286073	9286075	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000766;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000766;transcript_name=HG003_chrY_T0000766;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000766;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9283513	9286262	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_G0000236;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=HG003_chrY_T0000767;Name=TSPY3
HG003_chrY	CAT	exon	9283513	9283998	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=exon:HG003_chrY_T0000767:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9283513	9283998	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000767:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9283513	9283515	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000767;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9283999	9284605	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=intron:HG003_chrY_T0000767:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284606	9284683	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=exon:HG003_chrY_T0000767:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9284606	9284683	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000767:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284684	9284811	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=intron:HG003_chrY_T0000767:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284812	9284923	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=exon:HG003_chrY_T0000767:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9284812	9284923	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000767:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284924	9285024	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=intron:HG003_chrY_T0000767:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285025	9285170	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=exon:HG003_chrY_T0000767:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9285025	9285170	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000767:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285171	9285265	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=intron:HG003_chrY_T0000767:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285266	9285358	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=exon:HG003_chrY_T0000767:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9285266	9285328	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000767:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9285326	9285328	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000767;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285359	9286052	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=intron:HG003_chrY_T0000767:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9286053	9286262	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000767;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000767;transcript_name=HG003_chrY_T0000767;gene_name=TSPY3;ID=exon:HG003_chrY_T0000767:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9283513	9286269	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_G0000236;transcript_name=HG003_chrY_T0000768;gene_name=TSPY3;ID=HG003_chrY_T0000768;Name=TSPY3
HG003_chrY	CAT	exon	9283513	9283998	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000768;transcript_name=HG003_chrY_T0000768;gene_name=TSPY3;ID=exon:HG003_chrY_T0000768:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9283999	9284605	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000768;transcript_name=HG003_chrY_T0000768;gene_name=TSPY3;ID=intron:HG003_chrY_T0000768:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284606	9284683	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000768;transcript_name=HG003_chrY_T0000768;gene_name=TSPY3;ID=exon:HG003_chrY_T0000768:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9284684	9284811	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000768;transcript_name=HG003_chrY_T0000768;gene_name=TSPY3;ID=intron:HG003_chrY_T0000768:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9284812	9285358	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000768;transcript_name=HG003_chrY_T0000768;gene_name=TSPY3;ID=exon:HG003_chrY_T0000768:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285359	9285485	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000768;transcript_name=HG003_chrY_T0000768;gene_name=TSPY3;ID=intron:HG003_chrY_T0000768:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285486	9286269	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000768;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000768;transcript_name=HG003_chrY_T0000768;gene_name=TSPY3;ID=exon:HG003_chrY_T0000768:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9284873	9286254	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000769;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_G0000236;transcript_name=HG003_chrY_T0000769;gene_name=TSPY3;ID=HG003_chrY_T0000769;Name=TSPY3
HG003_chrY	CAT	exon	9284873	9285170	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000769;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000769;transcript_name=HG003_chrY_T0000769;gene_name=TSPY3;ID=exon:HG003_chrY_T0000769:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285171	9285265	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000769;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000769;transcript_name=HG003_chrY_T0000769;gene_name=TSPY3;ID=intron:HG003_chrY_T0000769:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9285266	9285358	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000769;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000769;transcript_name=HG003_chrY_T0000769;gene_name=TSPY3;ID=exon:HG003_chrY_T0000769:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9285359	9286052	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000769;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000769;transcript_name=HG003_chrY_T0000769;gene_name=TSPY3;ID=intron:HG003_chrY_T0000769:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9286053	9286254	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000769;gene_id=HG003_chrY_G0000236;Parent=HG003_chrY_T0000769;transcript_name=HG003_chrY_T0000769;gene_name=TSPY3;ID=exon:HG003_chrY_T0000769:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9295406	9301152	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000237;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000237;Name=FAM197Y5
HG003_chrY	CAT	transcript	9295406	9301152	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000770;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_G0000237;transcript_name=HG003_chrY_T0000770;gene_name=FAM197Y5;ID=HG003_chrY_T0000770;Name=FAM197Y5
HG003_chrY	CAT	exon	9295406	9295595	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000770;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000770;transcript_name=HG003_chrY_T0000770;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000770:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9295596	9299145	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000770;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000770;transcript_name=HG003_chrY_T0000770;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000770:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9299146	9299231	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000770;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000770;transcript_name=HG003_chrY_T0000770;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000770:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9299232	9301038	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000770;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000770;transcript_name=HG003_chrY_T0000770;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000770:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9301039	9301152	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000770;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000770;transcript_name=HG003_chrY_T0000770;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000770:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9295536	9301140	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_G0000237;transcript_name=HG003_chrY_T0000771;gene_name=FAM197Y5;ID=HG003_chrY_T0000771;Name=FAM197Y5
HG003_chrY	CAT	exon	9295536	9295595	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000771;transcript_name=HG003_chrY_T0000771;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000771:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9295596	9299145	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000771;transcript_name=HG003_chrY_T0000771;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000771:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9299146	9299304	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000771;transcript_name=HG003_chrY_T0000771;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000771:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9299305	9300806	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000771;transcript_name=HG003_chrY_T0000771;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000771:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9300807	9300952	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000771;transcript_name=HG003_chrY_T0000771;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000771:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9300953	9301038	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000771;transcript_name=HG003_chrY_T0000771;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000771:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9301039	9301140	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000771;gene_id=HG003_chrY_G0000237;Parent=HG003_chrY_T0000771;transcript_name=HG003_chrY_T0000771;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000771:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9300807	9302799	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8;gene_id=HG003_chrY_G0000238;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000238;Name=FAM197Y5
HG003_chrY	CAT	transcript	9300807	9302799	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000238;Parent=HG003_chrY_G0000238;transcript_name=HG003_chrY_T0000772;gene_name=FAM197Y5;ID=HG003_chrY_T0000772;Name=FAM197Y5
HG003_chrY	CAT	exon	9300807	9300952	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000238;Parent=HG003_chrY_T0000772;transcript_name=HG003_chrY_T0000772;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000772:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9300953	9302488	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000238;Parent=HG003_chrY_T0000772;transcript_name=HG003_chrY_T0000772;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000772:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9302489	9302799	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000772;gene_id=HG003_chrY_G0000238;Parent=HG003_chrY_T0000772;transcript_name=HG003_chrY_T0000772;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000772:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9303753	9306549	.	+	.	source_gene_common_name=TSPY10;source_gene=ENSG00000236424.7;alternative_source_transcripts=ENST00000451548.6;gene_id=HG003_chrY_G0000239;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff;ID=HG003_chrY_G0000239;Name=TSPY10
HG003_chrY	CAT	transcript	9303753	9306549	100	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_G0000239;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=HG003_chrY_T0000773;Name=TSPY10
HG003_chrY	CAT	exon	9303753	9304284	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=exon:HG003_chrY_T0000773:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9303799	9304284	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000773:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9303799	9303801	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000773;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304285	9304891	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=intron:HG003_chrY_T0000773:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9304892	9304969	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=exon:HG003_chrY_T0000773:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9304892	9304969	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000773:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304970	9305097	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=intron:HG003_chrY_T0000773:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305098	9305209	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=exon:HG003_chrY_T0000773:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305098	9305209	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000773:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305210	9305310	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=intron:HG003_chrY_T0000773:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305311	9305456	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=exon:HG003_chrY_T0000773:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305311	9305456	.	+	2	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000773:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305457	9305562	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=intron:HG003_chrY_T0000773:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305563	9305644	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=exon:HG003_chrY_T0000773:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305563	9305644	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000773:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305645	9306338	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=intron:HG003_chrY_T0000773:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9306339	9306549	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=exon:HG003_chrY_T0000773:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9306339	9306361	.	+	2	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000773:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9306359	9306361	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;alternative_source_transcripts=ENST00000451548.6;transcript_id=HG003_chrY_T0000773;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000773;transcript_name=HG003_chrY_T0000773;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000773;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9303799	9306548	100	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_G0000239;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=HG003_chrY_T0000774;Name=TSPY10
HG003_chrY	CAT	exon	9303799	9304284	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=exon:HG003_chrY_T0000774:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9303799	9304284	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000774:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9303799	9303801	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000774;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304285	9304891	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=intron:HG003_chrY_T0000774:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9304892	9304969	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=exon:HG003_chrY_T0000774:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9304892	9304969	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000774:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304970	9305097	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=intron:HG003_chrY_T0000774:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305098	9305209	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=exon:HG003_chrY_T0000774:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305098	9305209	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000774:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305210	9305310	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=intron:HG003_chrY_T0000774:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305311	9305456	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=exon:HG003_chrY_T0000774:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305311	9305456	.	+	2	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000774:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305457	9305551	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=intron:HG003_chrY_T0000774:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305552	9305644	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=exon:HG003_chrY_T0000774:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9305552	9305614	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000774:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9305612	9305614	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000774;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305645	9306338	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=intron:HG003_chrY_T0000774:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9306339	9306548	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000774;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000774;transcript_name=HG003_chrY_T0000774;gene_name=TSPY10;ID=exon:HG003_chrY_T0000774:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9303799	9306555	1000	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_G0000239;transcript_name=HG003_chrY_T0000775;gene_name=TSPY10;ID=HG003_chrY_T0000775;Name=TSPY10
HG003_chrY	CAT	exon	9303799	9304284	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000775;transcript_name=HG003_chrY_T0000775;gene_name=TSPY10;ID=exon:HG003_chrY_T0000775:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304285	9304891	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000775;transcript_name=HG003_chrY_T0000775;gene_name=TSPY10;ID=intron:HG003_chrY_T0000775:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9304892	9304969	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000775;transcript_name=HG003_chrY_T0000775;gene_name=TSPY10;ID=exon:HG003_chrY_T0000775:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9304970	9305097	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000775;transcript_name=HG003_chrY_T0000775;gene_name=TSPY10;ID=intron:HG003_chrY_T0000775:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305098	9305644	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000775;transcript_name=HG003_chrY_T0000775;gene_name=TSPY10;ID=exon:HG003_chrY_T0000775:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305645	9305771	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000775;transcript_name=HG003_chrY_T0000775;gene_name=TSPY10;ID=intron:HG003_chrY_T0000775:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305772	9306555	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000775;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000775;transcript_name=HG003_chrY_T0000775;gene_name=TSPY10;ID=exon:HG003_chrY_T0000775:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9305159	9306540	1000	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_G0000239;transcript_name=HG003_chrY_T0000776;gene_name=TSPY10;ID=HG003_chrY_T0000776;Name=TSPY10
HG003_chrY	CAT	exon	9305159	9305456	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000776;transcript_name=HG003_chrY_T0000776;gene_name=TSPY10;ID=exon:HG003_chrY_T0000776:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305457	9305562	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000776;transcript_name=HG003_chrY_T0000776;gene_name=TSPY10;ID=intron:HG003_chrY_T0000776:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9305563	9305644	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000776;transcript_name=HG003_chrY_T0000776;gene_name=TSPY10;ID=exon:HG003_chrY_T0000776:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9305645	9306338	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000776;transcript_name=HG003_chrY_T0000776;gene_name=TSPY10;ID=intron:HG003_chrY_T0000776:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9306339	9306540	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000776;gene_id=HG003_chrY_G0000239;Parent=HG003_chrY_T0000776;transcript_name=HG003_chrY_T0000776;gene_name=TSPY10;ID=exon:HG003_chrY_T0000776:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9315680	9321415	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;alternative_source_transcripts=ENST00000615605.1;gene_id=HG003_chrY_G0000240;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000240;Name=FAM197Y5
HG003_chrY	CAT	transcript	9315680	9321415	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000615605.1;transcript_id=HG003_chrY_T0000777;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_G0000240;transcript_name=HG003_chrY_T0000777;gene_name=FAM197Y5;ID=HG003_chrY_T0000777;Name=FAM197Y5
HG003_chrY	CAT	exon	9315680	9315869	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000615605.1;transcript_id=HG003_chrY_T0000777;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000777;transcript_name=HG003_chrY_T0000777;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000777:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9315870	9319418	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000615605.1;transcript_id=HG003_chrY_T0000777;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000777;transcript_name=HG003_chrY_T0000777;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000777:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9319419	9319504	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000615605.1;transcript_id=HG003_chrY_T0000777;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000777;transcript_name=HG003_chrY_T0000777;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000777:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9319505	9321301	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000615605.1;transcript_id=HG003_chrY_T0000777;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000777;transcript_name=HG003_chrY_T0000777;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000777:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9321302	9321415	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000615605.1;transcript_id=HG003_chrY_T0000777;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000777;transcript_name=HG003_chrY_T0000777;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000777:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9315810	9321403	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000619815.4;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_G0000240;transcript_name=HG003_chrY_T0000778;gene_name=FAM197Y5;ID=HG003_chrY_T0000778;Name=FAM197Y5
HG003_chrY	CAT	exon	9315810	9315869	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000619815.4;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000778;transcript_name=HG003_chrY_T0000778;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000778:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9315870	9319418	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000619815.4;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000778;transcript_name=HG003_chrY_T0000778;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000778:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9319419	9319577	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000619815.4;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000778;transcript_name=HG003_chrY_T0000778;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000778:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9319578	9321069	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000619815.4;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000778;transcript_name=HG003_chrY_T0000778;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000778:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9321070	9321215	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000619815.4;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000778;transcript_name=HG003_chrY_T0000778;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000778:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9321216	9321301	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000619815.4;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000778;transcript_name=HG003_chrY_T0000778;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000778:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9321302	9321403	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;alternative_source_transcripts=ENST00000619815.4;transcript_id=HG003_chrY_T0000778;gene_id=HG003_chrY_G0000240;Parent=HG003_chrY_T0000778;transcript_name=HG003_chrY_T0000778;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000778:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9321070	9323062	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_15;gene_id=HG003_chrY_G0000241;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000241;Name=FAM197Y5
HG003_chrY	CAT	transcript	9321070	9323062	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000779;gene_id=HG003_chrY_G0000241;Parent=HG003_chrY_G0000241;transcript_name=HG003_chrY_T0000779;gene_name=FAM197Y5;ID=HG003_chrY_T0000779;Name=FAM197Y5
HG003_chrY	CAT	exon	9321070	9321215	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000779;gene_id=HG003_chrY_G0000241;Parent=HG003_chrY_T0000779;transcript_name=HG003_chrY_T0000779;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000779:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9321216	9322751	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000779;gene_id=HG003_chrY_G0000241;Parent=HG003_chrY_T0000779;transcript_name=HG003_chrY_T0000779;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000779:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9322752	9323062	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000779;gene_id=HG003_chrY_G0000241;Parent=HG003_chrY_T0000779;transcript_name=HG003_chrY_T0000779;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000779:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9324016	9326830	.	+	.	source_gene_common_name=TSPY4;source_gene=ENSG00000233803.9;gene_id=HG003_chrY_G0000242;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff;ID=HG003_chrY_G0000242;Name=TSPY4
HG003_chrY	CAT	transcript	9324016	9326830	100	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_G0000242;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=HG003_chrY_T0000780;Name=TSPY4
HG003_chrY	CAT	exon	9324016	9324565	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=exon:HG003_chrY_T0000780:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9324062	9324565	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000780:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9324062	9324064	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000780;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9324566	9325172	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=intron:HG003_chrY_T0000780:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325173	9325250	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=exon:HG003_chrY_T0000780:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325173	9325250	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000780:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325251	9325378	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=intron:HG003_chrY_T0000780:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325379	9325490	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=exon:HG003_chrY_T0000780:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325379	9325490	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000780:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325491	9325591	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=intron:HG003_chrY_T0000780:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325592	9325737	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=exon:HG003_chrY_T0000780:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325592	9325737	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000780:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325738	9325843	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=intron:HG003_chrY_T0000780:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325844	9325925	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=exon:HG003_chrY_T0000780:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325844	9325925	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000780:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325926	9326619	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=intron:HG003_chrY_T0000780:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9326620	9326830	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=exon:HG003_chrY_T0000780:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9326620	9326642	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000780:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9326640	9326642	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000780;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000780;transcript_name=HG003_chrY_T0000780;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000780;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9324016	9326709	100	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_G0000242;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=HG003_chrY_T0000781;Name=TSPY4
HG003_chrY	CAT	exon	9324016	9324148	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=exon:HG003_chrY_T0000781:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9324062	9324148	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000781:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9324062	9324064	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000781;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9324149	9324427	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=intron:HG003_chrY_T0000781:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9324428	9324565	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=exon:HG003_chrY_T0000781:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9324428	9324565	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000781:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9324566	9325172	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=intron:HG003_chrY_T0000781:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325173	9325250	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=exon:HG003_chrY_T0000781:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325173	9325250	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000781:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325251	9325378	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=intron:HG003_chrY_T0000781:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325379	9325490	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=exon:HG003_chrY_T0000781:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325379	9325490	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000781:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325491	9325591	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=intron:HG003_chrY_T0000781:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325592	9325737	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=exon:HG003_chrY_T0000781:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325592	9325737	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000781:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325738	9325843	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=intron:HG003_chrY_T0000781:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325844	9325925	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=exon:HG003_chrY_T0000781:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325844	9325925	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000781:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325926	9326619	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=intron:HG003_chrY_T0000781:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9326620	9326709	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=exon:HG003_chrY_T0000781:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9326620	9326642	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000781:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9326640	9326642	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000781;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000781;transcript_name=HG003_chrY_T0000781;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000781;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9324062	9326829	100	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_G0000242;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=HG003_chrY_T0000782;Name=TSPY4
HG003_chrY	CAT	exon	9324062	9324565	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=exon:HG003_chrY_T0000782:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9324062	9324565	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000782:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9324062	9324064	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000782;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9324566	9325172	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=intron:HG003_chrY_T0000782:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325173	9325250	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=exon:HG003_chrY_T0000782:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325173	9325250	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000782:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325251	9325378	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=intron:HG003_chrY_T0000782:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325379	9325490	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=exon:HG003_chrY_T0000782:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325379	9325490	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000782:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325491	9325591	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=intron:HG003_chrY_T0000782:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325592	9325737	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=exon:HG003_chrY_T0000782:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325592	9325737	.	+	2	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000782:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325738	9325832	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=intron:HG003_chrY_T0000782:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325833	9325925	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=exon:HG003_chrY_T0000782:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9325833	9325895	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000782:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9325893	9325895	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000782;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325926	9326619	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=intron:HG003_chrY_T0000782:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9326620	9326829	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000782;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000782;transcript_name=HG003_chrY_T0000782;gene_name=TSPY4;ID=exon:HG003_chrY_T0000782:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9324062	9326836	1000	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000783;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_G0000242;transcript_name=HG003_chrY_T0000783;gene_name=TSPY4;ID=HG003_chrY_T0000783;Name=TSPY4
HG003_chrY	CAT	exon	9324062	9324565	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000783;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000783;transcript_name=HG003_chrY_T0000783;gene_name=TSPY4;ID=exon:HG003_chrY_T0000783:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9324566	9325172	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000783;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000783;transcript_name=HG003_chrY_T0000783;gene_name=TSPY4;ID=intron:HG003_chrY_T0000783:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325173	9325250	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000783;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000783;transcript_name=HG003_chrY_T0000783;gene_name=TSPY4;ID=exon:HG003_chrY_T0000783:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325251	9325378	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000783;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000783;transcript_name=HG003_chrY_T0000783;gene_name=TSPY4;ID=intron:HG003_chrY_T0000783:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325379	9325925	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000783;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000783;transcript_name=HG003_chrY_T0000783;gene_name=TSPY4;ID=exon:HG003_chrY_T0000783:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325926	9326052	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000783;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000783;transcript_name=HG003_chrY_T0000783;gene_name=TSPY4;ID=intron:HG003_chrY_T0000783:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9326053	9326836	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000783;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000783;transcript_name=HG003_chrY_T0000783;gene_name=TSPY4;ID=exon:HG003_chrY_T0000783:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9325440	9326821	1000	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000784;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_G0000242;transcript_name=HG003_chrY_T0000784;gene_name=TSPY4;ID=HG003_chrY_T0000784;Name=TSPY4
HG003_chrY	CAT	exon	9325440	9325737	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000784;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000784;transcript_name=HG003_chrY_T0000784;gene_name=TSPY4;ID=exon:HG003_chrY_T0000784:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325738	9325832	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000784;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000784;transcript_name=HG003_chrY_T0000784;gene_name=TSPY4;ID=intron:HG003_chrY_T0000784:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9325833	9325925	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000784;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000784;transcript_name=HG003_chrY_T0000784;gene_name=TSPY4;ID=exon:HG003_chrY_T0000784:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9325926	9326619	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000784;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000784;transcript_name=HG003_chrY_T0000784;gene_name=TSPY4;ID=intron:HG003_chrY_T0000784:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9326620	9326821	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000784;gene_id=HG003_chrY_G0000242;Parent=HG003_chrY_T0000784;transcript_name=HG003_chrY_T0000784;gene_name=TSPY4;ID=exon:HG003_chrY_T0000784:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9335993	9341741	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000243;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000243;Name=FAM197Y5
HG003_chrY	CAT	transcript	9335993	9341741	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000785;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_G0000243;transcript_name=HG003_chrY_T0000785;gene_name=FAM197Y5;ID=HG003_chrY_T0000785;Name=FAM197Y5
HG003_chrY	CAT	exon	9335993	9336182	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000785;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000785;transcript_name=HG003_chrY_T0000785;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000785:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9336183	9339736	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000785;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000785;transcript_name=HG003_chrY_T0000785;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000785:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9339737	9339822	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000785;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000785;transcript_name=HG003_chrY_T0000785;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000785:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9339823	9341627	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000785;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000785;transcript_name=HG003_chrY_T0000785;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000785:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9341628	9341741	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000785;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000785;transcript_name=HG003_chrY_T0000785;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000785:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9336123	9341729	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000786;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_G0000243;transcript_name=HG003_chrY_T0000786;gene_name=FAM197Y5;ID=HG003_chrY_T0000786;Name=FAM197Y5
HG003_chrY	CAT	exon	9336123	9336182	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000786;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000786;transcript_name=HG003_chrY_T0000786;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000786:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9336183	9339736	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000786;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000786;transcript_name=HG003_chrY_T0000786;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000786:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9339737	9339895	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000786;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000786;transcript_name=HG003_chrY_T0000786;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000786:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9339896	9341395	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000786;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000786;transcript_name=HG003_chrY_T0000786;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000786:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9341396	9341541	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000786;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000786;transcript_name=HG003_chrY_T0000786;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000786:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9341542	9341627	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000786;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000786;transcript_name=HG003_chrY_T0000786;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000786:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9341628	9341729	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000786;gene_id=HG003_chrY_G0000243;Parent=HG003_chrY_T0000786;transcript_name=HG003_chrY_T0000786;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000786:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9341396	9343388	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_5;gene_id=HG003_chrY_G0000244;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000244;Name=FAM197Y5
HG003_chrY	CAT	transcript	9341396	9343388	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000787;gene_id=HG003_chrY_G0000244;Parent=HG003_chrY_G0000244;transcript_name=HG003_chrY_T0000787;gene_name=FAM197Y5;ID=HG003_chrY_T0000787;Name=FAM197Y5
HG003_chrY	CAT	exon	9341396	9341541	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000787;gene_id=HG003_chrY_G0000244;Parent=HG003_chrY_T0000787;transcript_name=HG003_chrY_T0000787;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000787:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9341542	9343077	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000787;gene_id=HG003_chrY_G0000244;Parent=HG003_chrY_T0000787;transcript_name=HG003_chrY_T0000787;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000787:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9343078	9343388	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000787;gene_id=HG003_chrY_G0000244;Parent=HG003_chrY_T0000787;transcript_name=HG003_chrY_T0000787;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000787:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9344345	9347150	.	+	.	source_gene_common_name=ENSG00000301844;source_gene=ENSG00000301844.1_3;gene_id=HG003_chrY_G0000245;gene_biotype=lncRNA;gene_name=ENSG00000301844;gene_sources=liftoff;ID=HG003_chrY_G0000245;Name=ENSG00000301844
HG003_chrY	CAT	transcript	9344345	9347150	1000	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000788;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_G0000245;transcript_name=HG003_chrY_T0000788;gene_name=ENSG00000301844;ID=HG003_chrY_T0000788;Name=ENSG00000301844
HG003_chrY	CAT	exon	9344345	9344873	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000788;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000788;transcript_name=HG003_chrY_T0000788;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000788:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000788;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000788;transcript_name=HG003_chrY_T0000788;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000788:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000788;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000788;transcript_name=HG003_chrY_T0000788;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000788:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000788;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000788;transcript_name=HG003_chrY_T0000788;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000788:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9345798	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000788;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000788;transcript_name=HG003_chrY_T0000788;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000788:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345799	9345899	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000788;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000788;transcript_name=HG003_chrY_T0000788;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000788:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345900	9346045	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000788;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000788;transcript_name=HG003_chrY_T0000788;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000788:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346046	9346151	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000788;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000788;transcript_name=HG003_chrY_T0000788;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000788:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346152	9346233	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000788;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000788;transcript_name=HG003_chrY_T0000788;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000788:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000788;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000788;transcript_name=HG003_chrY_T0000788;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000788:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347150	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000788;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000788;transcript_name=HG003_chrY_T0000788;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000788:5;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9344354	9347145	1000	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000789;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_G0000245;transcript_name=HG003_chrY_T0000789;gene_name=ENSG00000301844;ID=HG003_chrY_T0000789;Name=ENSG00000301844
HG003_chrY	CAT	exon	9344354	9344873	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000789;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000789;transcript_name=HG003_chrY_T0000789;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000789:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000789;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000789;transcript_name=HG003_chrY_T0000789;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000789:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000789;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000789;transcript_name=HG003_chrY_T0000789;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000789:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000789;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000789;transcript_name=HG003_chrY_T0000789;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000789:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9345798	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000789;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000789;transcript_name=HG003_chrY_T0000789;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000789:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345799	9345906	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000789;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000789;transcript_name=HG003_chrY_T0000789;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000789:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345907	9346045	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000789;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000789;transcript_name=HG003_chrY_T0000789;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000789:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346046	9346151	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000789;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000789;transcript_name=HG003_chrY_T0000789;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000789:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346152	9346233	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000789;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000789;transcript_name=HG003_chrY_T0000789;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000789:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000789;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000789;transcript_name=HG003_chrY_T0000789;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000789:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347145	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000789;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000789;transcript_name=HG003_chrY_T0000789;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000789:5;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9344376	9347140	1000	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000790;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_G0000245;transcript_name=HG003_chrY_T0000790;gene_name=ENSG00000301844;ID=HG003_chrY_T0000790;Name=ENSG00000301844
HG003_chrY	CAT	exon	9344376	9344873	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000790;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000790;transcript_name=HG003_chrY_T0000790;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000790:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000790;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000790;transcript_name=HG003_chrY_T0000790;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000790:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000790;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000790;transcript_name=HG003_chrY_T0000790;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000790:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000790;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000790;transcript_name=HG003_chrY_T0000790;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000790:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9345798	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000790;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000790;transcript_name=HG003_chrY_T0000790;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000790:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345799	9345899	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000790;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000790;transcript_name=HG003_chrY_T0000790;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000790:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345900	9346233	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000790;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000790;transcript_name=HG003_chrY_T0000790;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000790:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000790;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000790;transcript_name=HG003_chrY_T0000790;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000790:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347140	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000790;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000790;transcript_name=HG003_chrY_T0000790;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000790:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9344386	9347145	1000	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000791;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_G0000245;transcript_name=HG003_chrY_T0000791;gene_name=ENSG00000301844;ID=HG003_chrY_T0000791;Name=ENSG00000301844
HG003_chrY	CAT	exon	9344386	9344873	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000791;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000791;transcript_name=HG003_chrY_T0000791;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000791:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000791;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000791;transcript_name=HG003_chrY_T0000791;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000791:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000791;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000791;transcript_name=HG003_chrY_T0000791;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000791:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000791;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000791;transcript_name=HG003_chrY_T0000791;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000791:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9346045	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000791;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000791;transcript_name=HG003_chrY_T0000791;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000791:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346046	9346151	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000791;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000791;transcript_name=HG003_chrY_T0000791;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000791:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346152	9346233	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000791;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000791;transcript_name=HG003_chrY_T0000791;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000791:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000791;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000791;transcript_name=HG003_chrY_T0000791;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000791:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347145	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000791;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000791;transcript_name=HG003_chrY_T0000791;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000791:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9344388	9347145	1000	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000792;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_G0000245;transcript_name=HG003_chrY_T0000792;gene_name=ENSG00000301844;ID=HG003_chrY_T0000792;Name=ENSG00000301844
HG003_chrY	CAT	exon	9344388	9344873	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000792;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000792;transcript_name=HG003_chrY_T0000792;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000792:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000792;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000792;transcript_name=HG003_chrY_T0000792;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000792:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000792;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000792;transcript_name=HG003_chrY_T0000792;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000792:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000792;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000792;transcript_name=HG003_chrY_T0000792;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000792:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9345798	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000792;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000792;transcript_name=HG003_chrY_T0000792;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000792:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345799	9345899	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000792;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000792;transcript_name=HG003_chrY_T0000792;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000792:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345900	9346045	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000792;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000792;transcript_name=HG003_chrY_T0000792;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000792:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346046	9346140	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000792;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000792;transcript_name=HG003_chrY_T0000792;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000792:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346141	9346233	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000792;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000792;transcript_name=HG003_chrY_T0000792;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000792:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000792;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000792;transcript_name=HG003_chrY_T0000792;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000792:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347145	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000792;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000792;transcript_name=HG003_chrY_T0000792;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000792:5;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9344388	9347138	1000	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000793;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_G0000245;transcript_name=HG003_chrY_T0000793;gene_name=ENSG00000301844;ID=HG003_chrY_T0000793;Name=ENSG00000301844
HG003_chrY	CAT	exon	9344388	9344873	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000793;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000793;transcript_name=HG003_chrY_T0000793;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000793:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000793;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000793;transcript_name=HG003_chrY_T0000793;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000793:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000793;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000793;transcript_name=HG003_chrY_T0000793;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000793:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000793;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000793;transcript_name=HG003_chrY_T0000793;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000793:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9346233	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000793;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000793;transcript_name=HG003_chrY_T0000793;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000793:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000793;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000793;transcript_name=HG003_chrY_T0000793;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000793:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347138	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000793;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000793;transcript_name=HG003_chrY_T0000793;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000793:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9344408	9347145	1000	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000795;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_G0000245;transcript_name=HG003_chrY_T0000795;gene_name=ENSG00000301844;ID=HG003_chrY_T0000795;Name=ENSG00000301844
HG003_chrY	CAT	exon	9344408	9344873	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000795;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000795;transcript_name=HG003_chrY_T0000795;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000795:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000795;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000795;transcript_name=HG003_chrY_T0000795;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000795:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000795;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000795;transcript_name=HG003_chrY_T0000795;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000795:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000795;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000795;transcript_name=HG003_chrY_T0000795;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000795:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9346045	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000795;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000795;transcript_name=HG003_chrY_T0000795;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000795:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346046	9346140	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000795;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000795;transcript_name=HG003_chrY_T0000795;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000795:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346141	9346233	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000795;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000795;transcript_name=HG003_chrY_T0000795;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000795:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000795;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000795;transcript_name=HG003_chrY_T0000795;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000795:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347145	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000795;gene_id=HG003_chrY_G0000245;Parent=HG003_chrY_T0000795;transcript_name=HG003_chrY_T0000795;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000795:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9344388	9347138	.	+	.	source_gene_common_name=TSPY7P;source_gene=ENSG00000188656.8_3;gene_id=HG003_chrY_G0000246;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY7P;gene_sources=liftoff;ID=HG003_chrY_G0000246;Name=TSPY7P
HG003_chrY	CAT	transcript	9344388	9347138	1000	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000794;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_G0000246;transcript_name=HG003_chrY_T0000794;gene_name=TSPY7P;ID=HG003_chrY_T0000794;Name=TSPY7P
HG003_chrY	CAT	exon	9344388	9344873	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000794;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000794;transcript_name=HG003_chrY_T0000794;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000794:0;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9344874	9345480	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000794;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000794;transcript_name=HG003_chrY_T0000794;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000794:0;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345481	9345558	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000794;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000794;transcript_name=HG003_chrY_T0000794;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000794:1;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345559	9345686	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000794;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000794;transcript_name=HG003_chrY_T0000794;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000794:1;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345687	9345798	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000794;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000794;transcript_name=HG003_chrY_T0000794;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000794:2;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9345799	9345899	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000794;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000794;transcript_name=HG003_chrY_T0000794;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000794:2;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9345900	9346045	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000794;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000794;transcript_name=HG003_chrY_T0000794;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000794:3;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346046	9346151	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000794;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000794;transcript_name=HG003_chrY_T0000794;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000794:3;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346152	9346233	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000794;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000794;transcript_name=HG003_chrY_T0000794;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000794:4;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9346234	9346927	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000794;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000794;transcript_name=HG003_chrY_T0000794;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000794:4;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9346928	9347138	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000794;gene_id=HG003_chrY_G0000246;Parent=HG003_chrY_T0000794;transcript_name=HG003_chrY_T0000794;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000794:5;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9354350	9362039	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000290448.1_4;gene_id=HG003_chrY_G0000247;gene_biotype=lncRNA;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000247;Name=FAM197Y9
HG003_chrY	CAT	transcript	9354350	9362039	1000	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000796;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_G0000247;transcript_name=HG003_chrY_T0000796;gene_name=FAM197Y9;ID=HG003_chrY_T0000796;Name=FAM197Y9
HG003_chrY	CAT	exon	9354350	9356477	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000796;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000796;transcript_name=HG003_chrY_T0000796;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000796:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9356478	9360028	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000796;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000796;transcript_name=HG003_chrY_T0000796;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000796:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9360029	9360114	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000796;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000796;transcript_name=HG003_chrY_T0000796;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000796:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9360115	9361919	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000796;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000796;transcript_name=HG003_chrY_T0000796;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000796:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9361920	9362039	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000796;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000796;transcript_name=HG003_chrY_T0000796;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000796:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9356418	9362021	1000	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000797;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_G0000247;transcript_name=HG003_chrY_T0000797;gene_name=FAM197Y9;ID=HG003_chrY_T0000797;Name=FAM197Y9
HG003_chrY	CAT	exon	9356418	9356477	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000797;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000797;transcript_name=HG003_chrY_T0000797;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000797:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9356478	9360028	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000797;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000797;transcript_name=HG003_chrY_T0000797;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000797:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9360029	9360187	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000797;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000797;transcript_name=HG003_chrY_T0000797;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000797:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9360188	9361687	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000797;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000797;transcript_name=HG003_chrY_T0000797;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000797:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9361688	9361833	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000797;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000797;transcript_name=HG003_chrY_T0000797;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000797:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9361834	9361919	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000797;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000797;transcript_name=HG003_chrY_T0000797;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000797:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9361920	9362021	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000797;gene_id=HG003_chrY_G0000247;Parent=HG003_chrY_T0000797;transcript_name=HG003_chrY_T0000797;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000797:3;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9361688	9363681	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000234830.9_6;gene_id=HG003_chrY_G0000248;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000248;Name=FAM197Y9
HG003_chrY	CAT	transcript	9361688	9363681	1000	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000798;gene_id=HG003_chrY_G0000248;Parent=HG003_chrY_G0000248;transcript_name=HG003_chrY_T0000798;gene_name=FAM197Y9;ID=HG003_chrY_T0000798;Name=FAM197Y9
HG003_chrY	CAT	exon	9361688	9361833	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000798;gene_id=HG003_chrY_G0000248;Parent=HG003_chrY_T0000798;transcript_name=HG003_chrY_T0000798;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000798:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9361834	9361945	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000798;gene_id=HG003_chrY_G0000248;Parent=HG003_chrY_T0000798;transcript_name=HG003_chrY_T0000798;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000798:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9361946	9362029	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000798;gene_id=HG003_chrY_G0000248;Parent=HG003_chrY_T0000798;transcript_name=HG003_chrY_T0000798;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000798:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9362030	9363371	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000798;gene_id=HG003_chrY_G0000248;Parent=HG003_chrY_T0000798;transcript_name=HG003_chrY_T0000798;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000798:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9363372	9363681	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000798;gene_id=HG003_chrY_G0000248;Parent=HG003_chrY_T0000798;transcript_name=HG003_chrY_T0000798;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000798:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9364637	9367442	.	+	.	source_gene_common_name=ENSG00000301844;source_gene=ENSG00000301844.1;gene_id=HG003_chrY_G0000249;gene_biotype=lncRNA;gene_name=ENSG00000301844;gene_sources=liftoff;ID=HG003_chrY_G0000249;Name=ENSG00000301844
HG003_chrY	CAT	transcript	9364637	9367442	1000	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000799;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_G0000249;transcript_name=HG003_chrY_T0000799;gene_name=ENSG00000301844;ID=HG003_chrY_T0000799;Name=ENSG00000301844
HG003_chrY	CAT	exon	9364637	9365165	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000799;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000799;transcript_name=HG003_chrY_T0000799;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000799:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000799;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000799;transcript_name=HG003_chrY_T0000799;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000799:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000799;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000799;transcript_name=HG003_chrY_T0000799;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000799:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000799;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000799;transcript_name=HG003_chrY_T0000799;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000799:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366090	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000799;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000799;transcript_name=HG003_chrY_T0000799;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000799:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366091	9366191	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000799;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000799;transcript_name=HG003_chrY_T0000799;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000799:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366192	9366337	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000799;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000799;transcript_name=HG003_chrY_T0000799;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000799:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366338	9366443	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000799;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000799;transcript_name=HG003_chrY_T0000799;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000799:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366444	9366525	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000799;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000799;transcript_name=HG003_chrY_T0000799;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000799:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000799;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000799;transcript_name=HG003_chrY_T0000799;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000799:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367442	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000799;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000799;transcript_name=HG003_chrY_T0000799;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000799:5;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9364646	9367437	1000	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000800;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_G0000249;transcript_name=HG003_chrY_T0000800;gene_name=ENSG00000301844;ID=HG003_chrY_T0000800;Name=ENSG00000301844
HG003_chrY	CAT	exon	9364646	9365165	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000800;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000800;transcript_name=HG003_chrY_T0000800;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000800:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000800;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000800;transcript_name=HG003_chrY_T0000800;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000800:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000800;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000800;transcript_name=HG003_chrY_T0000800;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000800:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000800;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000800;transcript_name=HG003_chrY_T0000800;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000800:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366090	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000800;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000800;transcript_name=HG003_chrY_T0000800;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000800:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366091	9366198	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000800;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000800;transcript_name=HG003_chrY_T0000800;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000800:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366199	9366337	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000800;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000800;transcript_name=HG003_chrY_T0000800;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000800:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366338	9366443	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000800;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000800;transcript_name=HG003_chrY_T0000800;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000800:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366444	9366525	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000800;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000800;transcript_name=HG003_chrY_T0000800;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000800:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000800;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000800;transcript_name=HG003_chrY_T0000800;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000800:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367437	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000800;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000800;transcript_name=HG003_chrY_T0000800;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000800:5;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9364668	9367432	1000	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000801;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_G0000249;transcript_name=HG003_chrY_T0000801;gene_name=ENSG00000301844;ID=HG003_chrY_T0000801;Name=ENSG00000301844
HG003_chrY	CAT	exon	9364668	9365165	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000801;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000801;transcript_name=HG003_chrY_T0000801;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000801:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000801;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000801;transcript_name=HG003_chrY_T0000801;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000801:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000801;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000801;transcript_name=HG003_chrY_T0000801;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000801:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000801;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000801;transcript_name=HG003_chrY_T0000801;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000801:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366090	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000801;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000801;transcript_name=HG003_chrY_T0000801;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000801:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366091	9366191	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000801;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000801;transcript_name=HG003_chrY_T0000801;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000801:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366192	9366525	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000801;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000801;transcript_name=HG003_chrY_T0000801;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000801:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000801;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000801;transcript_name=HG003_chrY_T0000801;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000801:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367432	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000801;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000801;transcript_name=HG003_chrY_T0000801;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000801:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9364678	9367437	1000	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000802;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_G0000249;transcript_name=HG003_chrY_T0000802;gene_name=ENSG00000301844;ID=HG003_chrY_T0000802;Name=ENSG00000301844
HG003_chrY	CAT	exon	9364678	9365165	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000802;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000802;transcript_name=HG003_chrY_T0000802;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000802:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000802;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000802;transcript_name=HG003_chrY_T0000802;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000802:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000802;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000802;transcript_name=HG003_chrY_T0000802;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000802:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000802;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000802;transcript_name=HG003_chrY_T0000802;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000802:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366337	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000802;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000802;transcript_name=HG003_chrY_T0000802;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000802:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366338	9366443	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000802;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000802;transcript_name=HG003_chrY_T0000802;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000802:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366444	9366525	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000802;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000802;transcript_name=HG003_chrY_T0000802;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000802:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000802;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000802;transcript_name=HG003_chrY_T0000802;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000802:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367437	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000802;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000802;transcript_name=HG003_chrY_T0000802;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000802:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9364680	9367430	1000	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000803;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_G0000249;transcript_name=HG003_chrY_T0000803;gene_name=ENSG00000301844;ID=HG003_chrY_T0000803;Name=ENSG00000301844
HG003_chrY	CAT	exon	9364680	9365165	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000803;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000803;transcript_name=HG003_chrY_T0000803;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000803:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000803;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000803;transcript_name=HG003_chrY_T0000803;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000803:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000803;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000803;transcript_name=HG003_chrY_T0000803;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000803:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000803;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000803;transcript_name=HG003_chrY_T0000803;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000803:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366525	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000803;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000803;transcript_name=HG003_chrY_T0000803;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000803:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000803;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000803;transcript_name=HG003_chrY_T0000803;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000803:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367430	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000803;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000803;transcript_name=HG003_chrY_T0000803;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000803:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9364680	9367437	1000	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000804;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_G0000249;transcript_name=HG003_chrY_T0000804;gene_name=ENSG00000301844;ID=HG003_chrY_T0000804;Name=ENSG00000301844
HG003_chrY	CAT	exon	9364680	9365165	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000804;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000804;transcript_name=HG003_chrY_T0000804;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000804:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000804;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000804;transcript_name=HG003_chrY_T0000804;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000804:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000804;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000804;transcript_name=HG003_chrY_T0000804;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000804:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000804;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000804;transcript_name=HG003_chrY_T0000804;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000804:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366090	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000804;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000804;transcript_name=HG003_chrY_T0000804;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000804:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366091	9366191	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000804;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000804;transcript_name=HG003_chrY_T0000804;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000804:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366192	9366337	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000804;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000804;transcript_name=HG003_chrY_T0000804;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000804:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366338	9366432	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000804;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000804;transcript_name=HG003_chrY_T0000804;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000804:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366433	9366525	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000804;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000804;transcript_name=HG003_chrY_T0000804;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000804:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000804;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000804;transcript_name=HG003_chrY_T0000804;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000804:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367437	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000804;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000804;transcript_name=HG003_chrY_T0000804;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000804:5;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9364700	9367437	1000	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000806;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_G0000249;transcript_name=HG003_chrY_T0000806;gene_name=ENSG00000301844;ID=HG003_chrY_T0000806;Name=ENSG00000301844
HG003_chrY	CAT	exon	9364700	9365165	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000806;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000806;transcript_name=HG003_chrY_T0000806;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000806:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000806;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000806;transcript_name=HG003_chrY_T0000806;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000806:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000806;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000806;transcript_name=HG003_chrY_T0000806;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000806:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000806;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000806;transcript_name=HG003_chrY_T0000806;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000806:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366337	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000806;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000806;transcript_name=HG003_chrY_T0000806;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000806:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366338	9366432	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000806;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000806;transcript_name=HG003_chrY_T0000806;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000806:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366433	9366525	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000806;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000806;transcript_name=HG003_chrY_T0000806;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000806:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000806;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000806;transcript_name=HG003_chrY_T0000806;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000806:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367437	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000806;gene_id=HG003_chrY_G0000249;Parent=HG003_chrY_T0000806;transcript_name=HG003_chrY_T0000806;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000806:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9364680	9367430	.	+	.	source_gene_common_name=TSPY7P;source_gene=ENSG00000188656.8;gene_id=HG003_chrY_G0000250;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY7P;gene_sources=liftoff;ID=HG003_chrY_G0000250;Name=TSPY7P
HG003_chrY	CAT	transcript	9364680	9367430	1000	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000805;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_G0000250;transcript_name=HG003_chrY_T0000805;gene_name=TSPY7P;ID=HG003_chrY_T0000805;Name=TSPY7P
HG003_chrY	CAT	exon	9364680	9365165	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000805;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000805;transcript_name=HG003_chrY_T0000805;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000805:0;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365166	9365772	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000805;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000805;transcript_name=HG003_chrY_T0000805;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000805:0;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365773	9365850	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000805;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000805;transcript_name=HG003_chrY_T0000805;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000805:1;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9365851	9365978	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000805;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000805;transcript_name=HG003_chrY_T0000805;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000805:1;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9365979	9366090	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000805;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000805;transcript_name=HG003_chrY_T0000805;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000805:2;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366091	9366191	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000805;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000805;transcript_name=HG003_chrY_T0000805;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000805:2;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366192	9366337	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000805;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000805;transcript_name=HG003_chrY_T0000805;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000805:3;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366338	9366443	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000805;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000805;transcript_name=HG003_chrY_T0000805;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000805:3;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9366444	9366525	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000805;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000805;transcript_name=HG003_chrY_T0000805;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000805:4;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9366526	9367219	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000805;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000805;transcript_name=HG003_chrY_T0000805;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000805:4;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9367220	9367430	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000805;gene_id=HG003_chrY_G0000250;Parent=HG003_chrY_T0000805;transcript_name=HG003_chrY_T0000805;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000805:5;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9374632	9382530	.	-	.	source_gene_common_name=FAM197Y8;source_gene=ENSG00000293362.1;gene_id=HG003_chrY_G0000251;gene_biotype=lncRNA;gene_name=FAM197Y8;gene_sources=liftoff;ID=HG003_chrY_G0000251;Name=FAM197Y8
HG003_chrY	CAT	transcript	9374632	9382530	1000	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000807;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_G0000251;transcript_name=HG003_chrY_T0000807;gene_name=FAM197Y8;ID=HG003_chrY_T0000807;Name=FAM197Y8
HG003_chrY	CAT	exon	9374632	9376759	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000807;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000807;transcript_name=HG003_chrY_T0000807;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000807:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9376760	9380310	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000807;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000807;transcript_name=HG003_chrY_T0000807;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000807:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9380311	9380396	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000807;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000807;transcript_name=HG003_chrY_T0000807;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000807:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9380397	9382209	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000807;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000807;transcript_name=HG003_chrY_T0000807;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000807:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9382210	9382319	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000807;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000807;transcript_name=HG003_chrY_T0000807;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000807:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9382320	9382515	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000807;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000807;transcript_name=HG003_chrY_T0000807;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000807:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9382516	9382530	.	-	.	source_transcript=ENST00000426661.5;source_transcript_name=FAM197Y8-205;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426661.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000426661.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000807;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000807;transcript_name=HG003_chrY_T0000807;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000807:3;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9376699	9382311	1000	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000808;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_G0000251;transcript_name=HG003_chrY_T0000808;gene_name=FAM197Y8;ID=HG003_chrY_T0000808;Name=FAM197Y8
HG003_chrY	CAT	exon	9376699	9376759	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000808;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000808;transcript_name=HG003_chrY_T0000808;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000808:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9376760	9380310	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000808;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000808;transcript_name=HG003_chrY_T0000808;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000808:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9380311	9380469	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000808;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000808;transcript_name=HG003_chrY_T0000808;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000808:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9380470	9381977	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000808;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000808;transcript_name=HG003_chrY_T0000808;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000808:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9381978	9382123	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000808;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000808;transcript_name=HG003_chrY_T0000808;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000808:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9382124	9382209	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000808;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000808;transcript_name=HG003_chrY_T0000808;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000808:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9382210	9382311	.	-	.	source_transcript=ENST00000432394.1;source_transcript_name=FAM197Y8-206;source_gene=ENSG00000293362.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293362.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432394.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432394.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000808;gene_id=HG003_chrY_G0000251;Parent=HG003_chrY_T0000808;transcript_name=HG003_chrY_T0000808;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000808:3;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9381975	9383941	.	-	.	source_gene_common_name=FAM197Y8;source_gene=ENSG00000225560.7;gene_id=HG003_chrY_G0000252;gene_biotype=transcribed_processed_pseudogene;gene_name=FAM197Y8;gene_sources=liftoff;ID=HG003_chrY_G0000252;Name=FAM197Y8
HG003_chrY	CAT	transcript	9381975	9383941	1000	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000809;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_G0000252;transcript_name=HG003_chrY_T0000809;gene_name=FAM197Y8;ID=HG003_chrY_T0000809;Name=FAM197Y8
HG003_chrY	CAT	exon	9381975	9382123	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000809;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000809;transcript_name=HG003_chrY_T0000809;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000809:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9382124	9382209	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000809;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000809;transcript_name=HG003_chrY_T0000809;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000809:0;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9382210	9382319	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000809;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000809;transcript_name=HG003_chrY_T0000809;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000809:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9382320	9383640	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000809;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000809;transcript_name=HG003_chrY_T0000809;gene_name=FAM197Y8;ID=intron:HG003_chrY_T0000809:1;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9383641	9383941	.	-	.	source_transcript=ENST00000450145.2;source_transcript_name=FAM197Y8-201;source_gene=ENSG00000225560.7;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000225560.7;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000450145.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000450145.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y8;transcript_id=HG003_chrY_T0000809;gene_id=HG003_chrY_G0000252;Parent=HG003_chrY_T0000809;transcript_name=HG003_chrY_T0000809;gene_name=FAM197Y8;ID=exon:HG003_chrY_T0000809:2;Name=FAM197Y8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9384964	9387732	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1_6;gene_id=HG003_chrY_G0000253;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000253;Name=ENSG00000293749
HG003_chrY	CAT	transcript	9384964	9387732	1000	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_G0000253;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=HG003_chrY_T0000810;Name=ENSG00000293749
HG003_chrY	CAT	exon	9384964	9385056	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000810:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385057	9385317	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000810:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9385318	9385455	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000810:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385456	9386062	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000810:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386063	9386140	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000810:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386141	9386268	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000810:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386269	9386380	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000810:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386381	9386481	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000810:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386482	9386627	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000810:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386628	9386733	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000810:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386734	9386815	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000810:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000810:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387732	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000810;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000810;transcript_name=HG003_chrY_T0000810;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000810:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9384976	9387720	1000	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_G0000253;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=HG003_chrY_T0000812;Name=ENSG00000293749
HG003_chrY	CAT	exon	9384976	9385056	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000812:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385057	9385317	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000812:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9385318	9385455	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000812:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385456	9386062	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000812:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386063	9386140	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000812:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386141	9386268	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000812:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386269	9386380	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000812:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386381	9386488	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000812:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386489	9386627	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000812:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386628	9386733	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000812:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386734	9386815	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000812:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000812:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387720	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000812;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000812;transcript_name=HG003_chrY_T0000812;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000812:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9384985	9387727	1000	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_G0000253;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=HG003_chrY_T0000813;Name=ENSG00000293749
HG003_chrY	CAT	exon	9384985	9385056	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000813:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385057	9385317	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000813:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9385318	9385455	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000813:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385456	9386062	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000813:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386063	9386140	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000813:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386141	9386268	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000813:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386269	9386380	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000813:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386381	9386481	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000813:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386482	9386627	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000813:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386628	9386722	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000813:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386723	9386815	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000813:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000813:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387727	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000813;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000813;transcript_name=HG003_chrY_T0000813;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000813:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9385187	9387725	1000	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000814;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_G0000253;transcript_name=HG003_chrY_T0000814;gene_name=ENSG00000293749;ID=HG003_chrY_T0000814;Name=ENSG00000293749
HG003_chrY	CAT	exon	9385187	9385455	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000814;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000814;transcript_name=HG003_chrY_T0000814;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000814:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385456	9386062	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000814;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000814;transcript_name=HG003_chrY_T0000814;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000814:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386063	9386140	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000814;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000814;transcript_name=HG003_chrY_T0000814;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000814:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386141	9386268	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000814;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000814;transcript_name=HG003_chrY_T0000814;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000814:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386269	9386380	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000814;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000814;transcript_name=HG003_chrY_T0000814;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000814:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386381	9386481	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000814;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000814;transcript_name=HG003_chrY_T0000814;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000814:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386482	9386627	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000814;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000814;transcript_name=HG003_chrY_T0000814;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000814:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386628	9386733	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000814;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000814;transcript_name=HG003_chrY_T0000814;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000814:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386734	9386815	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000814;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000814;transcript_name=HG003_chrY_T0000814;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000814:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000814;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000814;transcript_name=HG003_chrY_T0000814;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000814:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387725	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000814;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000814;transcript_name=HG003_chrY_T0000814;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000814:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9385283	9387720	1000	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000815;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_G0000253;transcript_name=HG003_chrY_T0000815;gene_name=ENSG00000293749;ID=HG003_chrY_T0000815;Name=ENSG00000293749
HG003_chrY	CAT	exon	9385283	9385455	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000815;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000815;transcript_name=HG003_chrY_T0000815;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000815:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385456	9386062	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000815;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000815;transcript_name=HG003_chrY_T0000815;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000815:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386063	9386140	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000815;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000815;transcript_name=HG003_chrY_T0000815;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000815:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386141	9386268	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000815;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000815;transcript_name=HG003_chrY_T0000815;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000815:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386269	9386380	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000815;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000815;transcript_name=HG003_chrY_T0000815;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000815:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386381	9386488	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000815;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000815;transcript_name=HG003_chrY_T0000815;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000815:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386489	9386627	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000815;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000815;transcript_name=HG003_chrY_T0000815;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000815:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386628	9386733	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000815;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000815;transcript_name=HG003_chrY_T0000815;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000815:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386734	9386815	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000815;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000815;transcript_name=HG003_chrY_T0000815;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000815:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000815;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000815;transcript_name=HG003_chrY_T0000815;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000815:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387720	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000815;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000815;transcript_name=HG003_chrY_T0000815;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000815:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9385409	9387731	1000	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000816;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_G0000253;transcript_name=HG003_chrY_T0000816;gene_name=ENSG00000293749;ID=HG003_chrY_T0000816;Name=ENSG00000293749
HG003_chrY	CAT	exon	9385409	9385511	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000816;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000816;transcript_name=HG003_chrY_T0000816;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000816:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385512	9386080	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000816;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000816;transcript_name=HG003_chrY_T0000816;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000816:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386081	9386140	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000816;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000816;transcript_name=HG003_chrY_T0000816;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000816:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386141	9386268	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000816;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000816;transcript_name=HG003_chrY_T0000816;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000816:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386269	9386380	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000816;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000816;transcript_name=HG003_chrY_T0000816;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000816:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386381	9386481	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000816;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000816;transcript_name=HG003_chrY_T0000816;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000816:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386482	9386627	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000816;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000816;transcript_name=HG003_chrY_T0000816;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000816:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386628	9386733	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000816;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000816;transcript_name=HG003_chrY_T0000816;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000816:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386734	9386815	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000816;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000816;transcript_name=HG003_chrY_T0000816;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000816:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000816;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000816;transcript_name=HG003_chrY_T0000816;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000816:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387731	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000816;gene_id=HG003_chrY_G0000253;Parent=HG003_chrY_T0000816;transcript_name=HG003_chrY_T0000816;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000816:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9384970	9387532	.	+	.	source_gene_common_name=TSPY6P;source_gene=ENSG00000270073.1_6;gene_id=HG003_chrY_G0000254;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY6P;gene_sources=liftoff;ID=HG003_chrY_G0000254;Name=TSPY6P
HG003_chrY	CAT	transcript	9384970	9387532	1000	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_G0000254;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=HG003_chrY_T0000811;Name=TSPY6P
HG003_chrY	CAT	exon	9384970	9385180	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000811:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385181	9385188	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000811:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9385189	9385455	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000811:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9385456	9386062	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000811:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386063	9386140	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000811:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386141	9386268	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000811:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386269	9386380	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000811:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386381	9386481	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000811:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386482	9386627	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000811:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386628	9386733	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000811:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386734	9386815	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000811:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000811:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387532	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000811;gene_id=HG003_chrY_G0000254;Parent=HG003_chrY_T0000811;transcript_name=HG003_chrY_T0000811;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000811:6;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9386110	9387727	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1;gene_id=HG003_chrY_G0000255;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000255;Name=ENSG00000293749
HG003_chrY	CAT	transcript	9386110	9387718	1000	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000817;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_G0000255;transcript_name=HG003_chrY_T0000817;gene_name=ENSG00000293749;ID=HG003_chrY_T0000817;Name=ENSG00000293749
HG003_chrY	CAT	exon	9386110	9386140	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000817;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000817;transcript_name=HG003_chrY_T0000817;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000817:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386141	9386268	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000817;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000817;transcript_name=HG003_chrY_T0000817;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000817:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386269	9386627	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000817;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000817;transcript_name=HG003_chrY_T0000817;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000817:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386628	9386733	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000817;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000817;transcript_name=HG003_chrY_T0000817;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000817:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9386734	9386815	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000817;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000817;transcript_name=HG003_chrY_T0000817;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000817:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000817;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000817;transcript_name=HG003_chrY_T0000817;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000817:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387718	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000817;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000817;transcript_name=HG003_chrY_T0000817;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000817:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9386655	9387727	1000	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000818;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_G0000255;transcript_name=HG003_chrY_T0000818;gene_name=ENSG00000293749;ID=HG003_chrY_T0000818;Name=ENSG00000293749
HG003_chrY	CAT	exon	9386655	9386815	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000818;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000818;transcript_name=HG003_chrY_T0000818;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000818:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9386816	9387509	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000818;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000818;transcript_name=HG003_chrY_T0000818;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000818:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9387510	9387727	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000818;gene_id=HG003_chrY_G0000255;Parent=HG003_chrY_T0000818;transcript_name=HG003_chrY_T0000818;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000818:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9394949	9402642	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000290448.1_5;gene_id=HG003_chrY_G0000256;gene_biotype=lncRNA;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000256;Name=FAM197Y9
HG003_chrY	CAT	transcript	9394949	9402642	1000	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000819;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_G0000256;transcript_name=HG003_chrY_T0000819;gene_name=FAM197Y9;ID=HG003_chrY_T0000819;Name=FAM197Y9
HG003_chrY	CAT	exon	9394949	9397076	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000819;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000819;transcript_name=HG003_chrY_T0000819;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000819:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9397077	9400627	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000819;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000819;transcript_name=HG003_chrY_T0000819;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000819:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9400628	9400713	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000819;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000819;transcript_name=HG003_chrY_T0000819;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000819:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9400714	9402522	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000819;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000819;transcript_name=HG003_chrY_T0000819;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000819:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9402523	9402642	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000819;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000819;transcript_name=HG003_chrY_T0000819;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000819:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9397017	9402624	1000	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000820;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_G0000256;transcript_name=HG003_chrY_T0000820;gene_name=FAM197Y9;ID=HG003_chrY_T0000820;Name=FAM197Y9
HG003_chrY	CAT	exon	9397017	9397076	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000820;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000820;transcript_name=HG003_chrY_T0000820;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000820:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9397077	9400627	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000820;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000820;transcript_name=HG003_chrY_T0000820;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000820:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9400628	9400786	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000820;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000820;transcript_name=HG003_chrY_T0000820;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000820:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9400787	9402290	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000820;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000820;transcript_name=HG003_chrY_T0000820;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000820:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9402291	9402436	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000820;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000820;transcript_name=HG003_chrY_T0000820;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000820:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9402437	9402522	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000820;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000820;transcript_name=HG003_chrY_T0000820;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000820:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9402523	9402624	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000820;gene_id=HG003_chrY_G0000256;Parent=HG003_chrY_T0000820;transcript_name=HG003_chrY_T0000820;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000820:3;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9402291	9404285	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000234830.9_8;gene_id=HG003_chrY_G0000257;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000257;Name=FAM197Y9
HG003_chrY	CAT	transcript	9402291	9404285	1000	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000821;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_G0000257;transcript_name=HG003_chrY_T0000821;gene_name=FAM197Y9;ID=HG003_chrY_T0000821;Name=FAM197Y9
HG003_chrY	CAT	exon	9402291	9402436	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000821;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000821;transcript_name=HG003_chrY_T0000821;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000821:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9402437	9402548	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000821;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000821;transcript_name=HG003_chrY_T0000821;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000821:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9402549	9402632	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000821;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000821;transcript_name=HG003_chrY_T0000821;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000821:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9402633	9403975	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000821;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000821;transcript_name=HG003_chrY_T0000821;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000821:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9403976	9404285	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000821;gene_id=HG003_chrY_G0000257;Parent=HG003_chrY_T0000821;transcript_name=HG003_chrY_T0000821;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000821:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9405239	9408053	.	+	.	source_gene_common_name=TSPY9;source_gene=ENSG00000238074.6;gene_id=HG003_chrY_G0000258;gene_biotype=protein_coding;gene_name=TSPY9;gene_sources=liftoff;ID=HG003_chrY_G0000258;Name=TSPY9
HG003_chrY	CAT	transcript	9405239	9408053	100	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_G0000258;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=HG003_chrY_T0000822;Name=TSPY9
HG003_chrY	CAT	exon	9405239	9405788	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=exon:HG003_chrY_T0000822:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9405285	9405788	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000822:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9405285	9405287	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000822;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9405789	9406395	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=intron:HG003_chrY_T0000822:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9406396	9406473	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=exon:HG003_chrY_T0000822:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9406396	9406473	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000822:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9406474	9406601	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=intron:HG003_chrY_T0000822:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9406602	9406713	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=exon:HG003_chrY_T0000822:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9406602	9406713	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000822:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9406714	9406814	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=intron:HG003_chrY_T0000822:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9406815	9406960	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=exon:HG003_chrY_T0000822:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9406815	9406960	.	+	2	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000822:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9406961	9407066	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=intron:HG003_chrY_T0000822:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9407067	9407148	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=exon:HG003_chrY_T0000822:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9407067	9407148	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000822:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9407149	9407842	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=intron:HG003_chrY_T0000822:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9407843	9408053	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=exon:HG003_chrY_T0000822:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9407843	9407865	.	+	2	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000822:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9407863	9407865	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000822;gene_id=HG003_chrY_G0000258;Parent=HG003_chrY_T0000822;transcript_name=HG003_chrY_T0000822;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000822;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9417177	9422924	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000259;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000259;Name=FAM197Y5
HG003_chrY	CAT	transcript	9417177	9422924	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000823;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_G0000259;transcript_name=HG003_chrY_T0000823;gene_name=FAM197Y5;ID=HG003_chrY_T0000823;Name=FAM197Y5
HG003_chrY	CAT	exon	9417177	9417366	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000823;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000823;transcript_name=HG003_chrY_T0000823;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000823:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9417367	9420915	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000823;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000823;transcript_name=HG003_chrY_T0000823;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000823:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9420916	9421001	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000823;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000823;transcript_name=HG003_chrY_T0000823;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000823:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9421002	9422810	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000823;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000823;transcript_name=HG003_chrY_T0000823;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000823:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9422811	9422924	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000823;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000823;transcript_name=HG003_chrY_T0000823;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000823:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9417307	9422912	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000824;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_G0000259;transcript_name=HG003_chrY_T0000824;gene_name=FAM197Y5;ID=HG003_chrY_T0000824;Name=FAM197Y5
HG003_chrY	CAT	exon	9417307	9417366	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000824;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000824;transcript_name=HG003_chrY_T0000824;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000824:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9417367	9420915	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000824;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000824;transcript_name=HG003_chrY_T0000824;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000824:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9420916	9421074	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000824;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000824;transcript_name=HG003_chrY_T0000824;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000824:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9421075	9422578	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000824;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000824;transcript_name=HG003_chrY_T0000824;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000824:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9422579	9422724	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000824;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000824;transcript_name=HG003_chrY_T0000824;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000824:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9422725	9422810	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000824;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000824;transcript_name=HG003_chrY_T0000824;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000824:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9422811	9422912	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000824;gene_id=HG003_chrY_G0000259;Parent=HG003_chrY_T0000824;transcript_name=HG003_chrY_T0000824;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000824:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9422579	9424571	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_4;gene_id=HG003_chrY_G0000260;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000260;Name=FAM197Y5
HG003_chrY	CAT	transcript	9422579	9424571	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000825;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_G0000260;transcript_name=HG003_chrY_T0000825;gene_name=FAM197Y5;ID=HG003_chrY_T0000825;Name=FAM197Y5
HG003_chrY	CAT	exon	9422579	9422724	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000825;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000825;transcript_name=HG003_chrY_T0000825;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000825:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9422725	9424260	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000825;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000825;transcript_name=HG003_chrY_T0000825;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000825:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9424261	9424571	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000825;gene_id=HG003_chrY_G0000260;Parent=HG003_chrY_T0000825;transcript_name=HG003_chrY_T0000825;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000825:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9425525	9428321	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;alternative_source_transcripts=ENST00000428845.6;gene_id=HG003_chrY_G0000261;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000261;Name=TSPY3
HG003_chrY	CAT	transcript	9425525	9428321	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_G0000261;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=HG003_chrY_T0000826;Name=TSPY3
HG003_chrY	CAT	exon	9425525	9426056	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=exon:HG003_chrY_T0000826:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9425571	9426056	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000826:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9425571	9425573	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000826;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426057	9426663	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=intron:HG003_chrY_T0000826:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426664	9426741	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=exon:HG003_chrY_T0000826:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9426664	9426741	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000826:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426742	9426869	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=intron:HG003_chrY_T0000826:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426870	9426981	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=exon:HG003_chrY_T0000826:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9426870	9426981	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000826:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426982	9427082	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=intron:HG003_chrY_T0000826:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427083	9427228	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=exon:HG003_chrY_T0000826:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9427083	9427228	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000826:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427229	9427334	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=intron:HG003_chrY_T0000826:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427335	9427416	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=exon:HG003_chrY_T0000826:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9427335	9427416	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000826:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427417	9428110	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=intron:HG003_chrY_T0000826:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9428111	9428321	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=exon:HG003_chrY_T0000826:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9428111	9428133	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000826:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9428131	9428133	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000428845.6;transcript_id=HG003_chrY_T0000826;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000826;transcript_name=HG003_chrY_T0000826;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000826;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9425571	9428320	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_G0000261;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=HG003_chrY_T0000827;Name=TSPY3
HG003_chrY	CAT	exon	9425571	9426056	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=exon:HG003_chrY_T0000827:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9425571	9426056	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000827:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9425571	9425573	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000827;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426057	9426663	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=intron:HG003_chrY_T0000827:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426664	9426741	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=exon:HG003_chrY_T0000827:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9426664	9426741	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000827:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426742	9426869	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=intron:HG003_chrY_T0000827:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426870	9426981	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=exon:HG003_chrY_T0000827:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9426870	9426981	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000827:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426982	9427082	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=intron:HG003_chrY_T0000827:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427083	9427228	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=exon:HG003_chrY_T0000827:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9427083	9427228	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000827:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427229	9427323	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=intron:HG003_chrY_T0000827:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427324	9427416	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=exon:HG003_chrY_T0000827:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9427324	9427386	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000827:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9427384	9427386	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000827;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427417	9428110	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=intron:HG003_chrY_T0000827:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9428111	9428320	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000444056.1;transcript_id=HG003_chrY_T0000827;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000827;transcript_name=HG003_chrY_T0000827;gene_name=TSPY3;ID=exon:HG003_chrY_T0000827:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9425571	9428133	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_G0000261;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=HG003_chrY_T0000828;Name=TSPY3
HG003_chrY	CAT	exon	9425571	9425657	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=exon:HG003_chrY_T0000828:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9425571	9425657	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000828:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9425571	9425573	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000828;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9425658	9425918	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=intron:HG003_chrY_T0000828:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9425919	9426056	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=exon:HG003_chrY_T0000828:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9425919	9426056	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000828:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426057	9426663	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=intron:HG003_chrY_T0000828:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426664	9426741	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=exon:HG003_chrY_T0000828:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9426664	9426741	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000828:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426742	9426869	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=intron:HG003_chrY_T0000828:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426870	9426981	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=exon:HG003_chrY_T0000828:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9426870	9426981	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000828:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426982	9427082	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=intron:HG003_chrY_T0000828:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427083	9427228	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=exon:HG003_chrY_T0000828:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9427083	9427228	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000828:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427229	9427334	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=intron:HG003_chrY_T0000828:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427335	9427416	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=exon:HG003_chrY_T0000828:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9427335	9427416	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000828:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427417	9428110	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=intron:HG003_chrY_T0000828:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9428111	9428133	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=exon:HG003_chrY_T0000828:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9428111	9428133	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000828:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9428131	9428133	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000828;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000828;transcript_name=HG003_chrY_T0000828;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000828;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9425571	9428327	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000489397.1;transcript_id=HG003_chrY_T0000829;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_G0000261;transcript_name=HG003_chrY_T0000829;gene_name=TSPY3;ID=HG003_chrY_T0000829;Name=TSPY3
HG003_chrY	CAT	exon	9425571	9426056	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000489397.1;transcript_id=HG003_chrY_T0000829;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000829;transcript_name=HG003_chrY_T0000829;gene_name=TSPY3;ID=exon:HG003_chrY_T0000829:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426057	9426663	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000489397.1;transcript_id=HG003_chrY_T0000829;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000829;transcript_name=HG003_chrY_T0000829;gene_name=TSPY3;ID=intron:HG003_chrY_T0000829:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426664	9426741	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000489397.1;transcript_id=HG003_chrY_T0000829;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000829;transcript_name=HG003_chrY_T0000829;gene_name=TSPY3;ID=exon:HG003_chrY_T0000829:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9426742	9426869	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000489397.1;transcript_id=HG003_chrY_T0000829;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000829;transcript_name=HG003_chrY_T0000829;gene_name=TSPY3;ID=intron:HG003_chrY_T0000829:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9426870	9427416	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000489397.1;transcript_id=HG003_chrY_T0000829;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000829;transcript_name=HG003_chrY_T0000829;gene_name=TSPY3;ID=exon:HG003_chrY_T0000829:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427417	9427543	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000489397.1;transcript_id=HG003_chrY_T0000829;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000829;transcript_name=HG003_chrY_T0000829;gene_name=TSPY3;ID=intron:HG003_chrY_T0000829:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427544	9428327	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;alternative_source_transcripts=ENST00000489397.1;transcript_id=HG003_chrY_T0000829;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000829;transcript_name=HG003_chrY_T0000829;gene_name=TSPY3;ID=exon:HG003_chrY_T0000829:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9426931	9428312	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000830;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_G0000261;transcript_name=HG003_chrY_T0000830;gene_name=TSPY3;ID=HG003_chrY_T0000830;Name=TSPY3
HG003_chrY	CAT	exon	9426931	9427228	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000830;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000830;transcript_name=HG003_chrY_T0000830;gene_name=TSPY3;ID=exon:HG003_chrY_T0000830:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427229	9427323	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000830;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000830;transcript_name=HG003_chrY_T0000830;gene_name=TSPY3;ID=intron:HG003_chrY_T0000830:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9427324	9427416	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000830;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000830;transcript_name=HG003_chrY_T0000830;gene_name=TSPY3;ID=exon:HG003_chrY_T0000830:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9427417	9428110	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000830;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000830;transcript_name=HG003_chrY_T0000830;gene_name=TSPY3;ID=intron:HG003_chrY_T0000830:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9428111	9428312	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000830;gene_id=HG003_chrY_G0000261;Parent=HG003_chrY_T0000830;transcript_name=HG003_chrY_T0000830;gene_name=TSPY3;ID=exon:HG003_chrY_T0000830:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9437461	9443208	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000262;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000262;Name=FAM197Y5
HG003_chrY	CAT	transcript	9437461	9443208	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000831;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_G0000262;transcript_name=HG003_chrY_T0000831;gene_name=FAM197Y5;ID=HG003_chrY_T0000831;Name=FAM197Y5
HG003_chrY	CAT	exon	9437461	9437650	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000831;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000831;transcript_name=HG003_chrY_T0000831;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000831:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9437651	9441205	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000831;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000831;transcript_name=HG003_chrY_T0000831;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000831:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9441206	9441291	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000831;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000831;transcript_name=HG003_chrY_T0000831;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000831:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9441292	9443094	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000831;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000831;transcript_name=HG003_chrY_T0000831;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000831:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9443095	9443208	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000831;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000831;transcript_name=HG003_chrY_T0000831;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000831:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9437591	9443196	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000832;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_G0000262;transcript_name=HG003_chrY_T0000832;gene_name=FAM197Y5;ID=HG003_chrY_T0000832;Name=FAM197Y5
HG003_chrY	CAT	exon	9437591	9437650	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000832;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000832;transcript_name=HG003_chrY_T0000832;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000832:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9437651	9441205	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000832;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000832;transcript_name=HG003_chrY_T0000832;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000832:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9441206	9441364	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000832;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000832;transcript_name=HG003_chrY_T0000832;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000832:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9441365	9442862	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000832;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000832;transcript_name=HG003_chrY_T0000832;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000832:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9442863	9443008	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000832;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000832;transcript_name=HG003_chrY_T0000832;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000832:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9443009	9443094	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000832;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000832;transcript_name=HG003_chrY_T0000832;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000832:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9443095	9443196	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000832;gene_id=HG003_chrY_G0000262;Parent=HG003_chrY_T0000832;transcript_name=HG003_chrY_T0000832;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000832:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9442863	9444855	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_16;gene_id=HG003_chrY_G0000263;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000263;Name=FAM197Y5
HG003_chrY	CAT	transcript	9442863	9444855	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_16;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_16;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000833;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_G0000263;transcript_name=HG003_chrY_T0000833;gene_name=FAM197Y5;ID=HG003_chrY_T0000833;Name=FAM197Y5
HG003_chrY	CAT	exon	9442863	9443008	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_16;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_16;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000833;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000833;transcript_name=HG003_chrY_T0000833;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000833:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9443009	9444544	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_16;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_16;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000833;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000833;transcript_name=HG003_chrY_T0000833;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000833:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9444545	9444855	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_16;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_16;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000833;gene_id=HG003_chrY_G0000263;Parent=HG003_chrY_T0000833;transcript_name=HG003_chrY_T0000833;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000833:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9445809	9448623	.	+	.	source_gene_common_name=TSPY4;source_gene=ENSG00000233803.9;gene_id=HG003_chrY_G0000264;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff;ID=HG003_chrY_G0000264;Name=TSPY4
HG003_chrY	CAT	transcript	9445809	9448623	100	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_G0000264;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=HG003_chrY_T0000834;Name=TSPY4
HG003_chrY	CAT	exon	9445809	9446358	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=exon:HG003_chrY_T0000834:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9445855	9446358	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000834:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9445855	9445857	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000834;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9446359	9446965	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=intron:HG003_chrY_T0000834:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9446966	9447043	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=exon:HG003_chrY_T0000834:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9446966	9447043	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000834:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447044	9447171	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=intron:HG003_chrY_T0000834:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447172	9447283	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=exon:HG003_chrY_T0000834:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447172	9447283	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000834:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447284	9447384	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=intron:HG003_chrY_T0000834:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447385	9447530	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=exon:HG003_chrY_T0000834:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447385	9447530	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000834:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447531	9447636	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=intron:HG003_chrY_T0000834:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447637	9447718	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=exon:HG003_chrY_T0000834:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447637	9447718	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000834:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447719	9448412	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=intron:HG003_chrY_T0000834:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9448413	9448623	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=exon:HG003_chrY_T0000834:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9448413	9448435	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000834:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9448433	9448435	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000834;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000834;transcript_name=HG003_chrY_T0000834;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000834;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9445809	9448502	100	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_G0000264;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=HG003_chrY_T0000835;Name=TSPY4
HG003_chrY	CAT	exon	9445809	9445941	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=exon:HG003_chrY_T0000835:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9445855	9445941	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000835:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9445855	9445857	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000835;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9445942	9446220	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=intron:HG003_chrY_T0000835:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9446221	9446358	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=exon:HG003_chrY_T0000835:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9446221	9446358	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000835:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9446359	9446965	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=intron:HG003_chrY_T0000835:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9446966	9447043	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=exon:HG003_chrY_T0000835:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9446966	9447043	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000835:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447044	9447171	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=intron:HG003_chrY_T0000835:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447172	9447283	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=exon:HG003_chrY_T0000835:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447172	9447283	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000835:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447284	9447384	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=intron:HG003_chrY_T0000835:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447385	9447530	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=exon:HG003_chrY_T0000835:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447385	9447530	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000835:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447531	9447636	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=intron:HG003_chrY_T0000835:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447637	9447718	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=exon:HG003_chrY_T0000835:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447637	9447718	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000835:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447719	9448412	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=intron:HG003_chrY_T0000835:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9448413	9448502	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=exon:HG003_chrY_T0000835:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9448413	9448435	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000835:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9448433	9448435	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000835;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000835;transcript_name=HG003_chrY_T0000835;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000835;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9445855	9448622	100	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_G0000264;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=HG003_chrY_T0000836;Name=TSPY4
HG003_chrY	CAT	exon	9445855	9446358	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=exon:HG003_chrY_T0000836:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9445855	9446358	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000836:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9445855	9445857	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000836;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9446359	9446965	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=intron:HG003_chrY_T0000836:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9446966	9447043	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=exon:HG003_chrY_T0000836:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9446966	9447043	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000836:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447044	9447171	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=intron:HG003_chrY_T0000836:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447172	9447283	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=exon:HG003_chrY_T0000836:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447172	9447283	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000836:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447284	9447384	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=intron:HG003_chrY_T0000836:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447385	9447530	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=exon:HG003_chrY_T0000836:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447385	9447530	.	+	2	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000836:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447531	9447625	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=intron:HG003_chrY_T0000836:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447626	9447718	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=exon:HG003_chrY_T0000836:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9447626	9447688	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000836:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9447686	9447688	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000836;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447719	9448412	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=intron:HG003_chrY_T0000836:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9448413	9448622	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000836;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000836;transcript_name=HG003_chrY_T0000836;gene_name=TSPY4;ID=exon:HG003_chrY_T0000836:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9445855	9448629	1000	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000837;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_G0000264;transcript_name=HG003_chrY_T0000837;gene_name=TSPY4;ID=HG003_chrY_T0000837;Name=TSPY4
HG003_chrY	CAT	exon	9445855	9446358	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000837;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000837;transcript_name=HG003_chrY_T0000837;gene_name=TSPY4;ID=exon:HG003_chrY_T0000837:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9446359	9446965	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000837;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000837;transcript_name=HG003_chrY_T0000837;gene_name=TSPY4;ID=intron:HG003_chrY_T0000837:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9446966	9447043	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000837;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000837;transcript_name=HG003_chrY_T0000837;gene_name=TSPY4;ID=exon:HG003_chrY_T0000837:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447044	9447171	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000837;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000837;transcript_name=HG003_chrY_T0000837;gene_name=TSPY4;ID=intron:HG003_chrY_T0000837:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447172	9447718	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000837;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000837;transcript_name=HG003_chrY_T0000837;gene_name=TSPY4;ID=exon:HG003_chrY_T0000837:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447719	9447845	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000837;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000837;transcript_name=HG003_chrY_T0000837;gene_name=TSPY4;ID=intron:HG003_chrY_T0000837:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447846	9448629	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000837;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000837;transcript_name=HG003_chrY_T0000837;gene_name=TSPY4;ID=exon:HG003_chrY_T0000837:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9447233	9448614	1000	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000838;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_G0000264;transcript_name=HG003_chrY_T0000838;gene_name=TSPY4;ID=HG003_chrY_T0000838;Name=TSPY4
HG003_chrY	CAT	exon	9447233	9447530	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000838;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000838;transcript_name=HG003_chrY_T0000838;gene_name=TSPY4;ID=exon:HG003_chrY_T0000838:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447531	9447625	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000838;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000838;transcript_name=HG003_chrY_T0000838;gene_name=TSPY4;ID=intron:HG003_chrY_T0000838:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9447626	9447718	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000838;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000838;transcript_name=HG003_chrY_T0000838;gene_name=TSPY4;ID=exon:HG003_chrY_T0000838:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9447719	9448412	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000838;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000838;transcript_name=HG003_chrY_T0000838;gene_name=TSPY4;ID=intron:HG003_chrY_T0000838:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9448413	9448614	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000838;gene_id=HG003_chrY_G0000264;Parent=HG003_chrY_T0000838;transcript_name=HG003_chrY_T0000838;gene_name=TSPY4;ID=exon:HG003_chrY_T0000838:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9457751	9463490	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000265;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000265;Name=FAM197Y5
HG003_chrY	CAT	transcript	9457751	9463490	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000839;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_G0000265;transcript_name=HG003_chrY_T0000839;gene_name=FAM197Y5;ID=HG003_chrY_T0000839;Name=FAM197Y5
HG003_chrY	CAT	exon	9457751	9457940	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000839;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000839;transcript_name=HG003_chrY_T0000839;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000839:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9457941	9461489	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000839;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000839;transcript_name=HG003_chrY_T0000839;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000839:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9461490	9461575	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000839;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000839;transcript_name=HG003_chrY_T0000839;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000839:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9461576	9463376	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000839;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000839;transcript_name=HG003_chrY_T0000839;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000839:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9463377	9463490	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000839;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000839;transcript_name=HG003_chrY_T0000839;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000839:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9457881	9463478	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000840;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_G0000265;transcript_name=HG003_chrY_T0000840;gene_name=FAM197Y5;ID=HG003_chrY_T0000840;Name=FAM197Y5
HG003_chrY	CAT	exon	9457881	9457940	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000840;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000840;transcript_name=HG003_chrY_T0000840;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000840:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9457941	9461489	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000840;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000840;transcript_name=HG003_chrY_T0000840;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000840:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9461490	9461648	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000840;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000840;transcript_name=HG003_chrY_T0000840;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000840:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9461649	9463144	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000840;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000840;transcript_name=HG003_chrY_T0000840;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000840:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9463145	9463290	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000840;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000840;transcript_name=HG003_chrY_T0000840;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000840:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9463291	9463376	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000840;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000840;transcript_name=HG003_chrY_T0000840;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000840:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9463377	9463478	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000840;gene_id=HG003_chrY_G0000265;Parent=HG003_chrY_T0000840;transcript_name=HG003_chrY_T0000840;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000840:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9463145	9465137	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_6;gene_id=HG003_chrY_G0000266;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000266;Name=FAM197Y5
HG003_chrY	CAT	transcript	9463145	9465137	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000841;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_G0000266;transcript_name=HG003_chrY_T0000841;gene_name=FAM197Y5;ID=HG003_chrY_T0000841;Name=FAM197Y5
HG003_chrY	CAT	exon	9463145	9463290	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000841;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000841;transcript_name=HG003_chrY_T0000841;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000841:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9463291	9464826	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000841;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000841;transcript_name=HG003_chrY_T0000841;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000841:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9464827	9465137	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000841;gene_id=HG003_chrY_G0000266;Parent=HG003_chrY_T0000841;transcript_name=HG003_chrY_T0000841;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000841:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9466091	9468887	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;gene_id=HG003_chrY_G0000267;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000267;Name=TSPY3
HG003_chrY	CAT	transcript	9466091	9468887	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_G0000267;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=HG003_chrY_T0000842;Name=TSPY3
HG003_chrY	CAT	exon	9466091	9466622	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=exon:HG003_chrY_T0000842:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9466137	9466622	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000842:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9466137	9466139	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000842;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9466623	9467229	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=intron:HG003_chrY_T0000842:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467230	9467307	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=exon:HG003_chrY_T0000842:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467230	9467307	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000842:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467308	9467435	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=intron:HG003_chrY_T0000842:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467436	9467547	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=exon:HG003_chrY_T0000842:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467436	9467547	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000842:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467548	9467648	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=intron:HG003_chrY_T0000842:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467649	9467794	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=exon:HG003_chrY_T0000842:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467649	9467794	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000842:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467795	9467900	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=intron:HG003_chrY_T0000842:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467901	9467982	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=exon:HG003_chrY_T0000842:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467901	9467982	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000842:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467983	9468676	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=intron:HG003_chrY_T0000842:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9468677	9468887	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=exon:HG003_chrY_T0000842:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9468677	9468699	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000842:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9468697	9468699	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000842;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000842;transcript_name=HG003_chrY_T0000842;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000842;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9466137	9468886	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_G0000267;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=HG003_chrY_T0000843;Name=TSPY3
HG003_chrY	CAT	exon	9466137	9466622	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=exon:HG003_chrY_T0000843:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9466137	9466622	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000843:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9466137	9466139	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000843;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9466623	9467229	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=intron:HG003_chrY_T0000843:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467230	9467307	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=exon:HG003_chrY_T0000843:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467230	9467307	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000843:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467308	9467435	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=intron:HG003_chrY_T0000843:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467436	9467547	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=exon:HG003_chrY_T0000843:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467436	9467547	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000843:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467548	9467648	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=intron:HG003_chrY_T0000843:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467649	9467794	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=exon:HG003_chrY_T0000843:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467649	9467794	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000843:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467795	9467889	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=intron:HG003_chrY_T0000843:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467890	9467982	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=exon:HG003_chrY_T0000843:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467890	9467952	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000843:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9467950	9467952	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000843;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467983	9468676	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=intron:HG003_chrY_T0000843:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9468677	9468886	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000843;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000843;transcript_name=HG003_chrY_T0000843;gene_name=TSPY3;ID=exon:HG003_chrY_T0000843:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9466137	9468699	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_G0000267;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=HG003_chrY_T0000844;Name=TSPY3
HG003_chrY	CAT	exon	9466137	9466223	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=exon:HG003_chrY_T0000844:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9466137	9466223	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000844:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9466137	9466139	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000844;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9466224	9466484	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=intron:HG003_chrY_T0000844:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9466485	9466622	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=exon:HG003_chrY_T0000844:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9466485	9466622	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000844:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9466623	9467229	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=intron:HG003_chrY_T0000844:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467230	9467307	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=exon:HG003_chrY_T0000844:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467230	9467307	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000844:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467308	9467435	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=intron:HG003_chrY_T0000844:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467436	9467547	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=exon:HG003_chrY_T0000844:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467436	9467547	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000844:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467548	9467648	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=intron:HG003_chrY_T0000844:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467649	9467794	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=exon:HG003_chrY_T0000844:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467649	9467794	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000844:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467795	9467900	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=intron:HG003_chrY_T0000844:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467901	9467982	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=exon:HG003_chrY_T0000844:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9467901	9467982	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000844:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467983	9468676	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=intron:HG003_chrY_T0000844:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9468677	9468699	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=exon:HG003_chrY_T0000844:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9468677	9468699	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000844:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9468697	9468699	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000844;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000844;transcript_name=HG003_chrY_T0000844;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000844;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9466137	9468893	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000845;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_G0000267;transcript_name=HG003_chrY_T0000845;gene_name=TSPY3;ID=HG003_chrY_T0000845;Name=TSPY3
HG003_chrY	CAT	exon	9466137	9466622	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000845;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000845;transcript_name=HG003_chrY_T0000845;gene_name=TSPY3;ID=exon:HG003_chrY_T0000845:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9466623	9467229	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000845;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000845;transcript_name=HG003_chrY_T0000845;gene_name=TSPY3;ID=intron:HG003_chrY_T0000845:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467230	9467307	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000845;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000845;transcript_name=HG003_chrY_T0000845;gene_name=TSPY3;ID=exon:HG003_chrY_T0000845:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467308	9467435	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000845;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000845;transcript_name=HG003_chrY_T0000845;gene_name=TSPY3;ID=intron:HG003_chrY_T0000845:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467436	9467982	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000845;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000845;transcript_name=HG003_chrY_T0000845;gene_name=TSPY3;ID=exon:HG003_chrY_T0000845:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467983	9468109	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000845;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000845;transcript_name=HG003_chrY_T0000845;gene_name=TSPY3;ID=intron:HG003_chrY_T0000845:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9468110	9468893	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000845;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000845;transcript_name=HG003_chrY_T0000845;gene_name=TSPY3;ID=exon:HG003_chrY_T0000845:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9467497	9468878	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000846;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_G0000267;transcript_name=HG003_chrY_T0000846;gene_name=TSPY3;ID=HG003_chrY_T0000846;Name=TSPY3
HG003_chrY	CAT	exon	9467497	9467794	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000846;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000846;transcript_name=HG003_chrY_T0000846;gene_name=TSPY3;ID=exon:HG003_chrY_T0000846:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467795	9467889	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000846;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000846;transcript_name=HG003_chrY_T0000846;gene_name=TSPY3;ID=intron:HG003_chrY_T0000846:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9467890	9467982	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000846;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000846;transcript_name=HG003_chrY_T0000846;gene_name=TSPY3;ID=exon:HG003_chrY_T0000846:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9467983	9468676	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000846;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000846;transcript_name=HG003_chrY_T0000846;gene_name=TSPY3;ID=intron:HG003_chrY_T0000846:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9468677	9468878	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000846;gene_id=HG003_chrY_G0000267;Parent=HG003_chrY_T0000846;transcript_name=HG003_chrY_T0000846;gene_name=TSPY3;ID=exon:HG003_chrY_T0000846:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9478013	9483755	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000268;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000268;Name=FAM197Y5
HG003_chrY	CAT	transcript	9478013	9483755	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000847;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_G0000268;transcript_name=HG003_chrY_T0000847;gene_name=FAM197Y5;ID=HG003_chrY_T0000847;Name=FAM197Y5
HG003_chrY	CAT	exon	9478013	9478202	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000847;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000847;transcript_name=HG003_chrY_T0000847;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000847:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9478203	9481756	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000847;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000847;transcript_name=HG003_chrY_T0000847;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000847:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9481757	9481842	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000847;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000847;transcript_name=HG003_chrY_T0000847;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000847:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9481843	9483641	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000847;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000847;transcript_name=HG003_chrY_T0000847;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000847:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9483642	9483755	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000847;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000847;transcript_name=HG003_chrY_T0000847;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000847:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9478143	9483743	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000848;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_G0000268;transcript_name=HG003_chrY_T0000848;gene_name=FAM197Y5;ID=HG003_chrY_T0000848;Name=FAM197Y5
HG003_chrY	CAT	exon	9478143	9478202	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000848;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000848;transcript_name=HG003_chrY_T0000848;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000848:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9478203	9481756	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000848;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000848;transcript_name=HG003_chrY_T0000848;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000848:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9481757	9481915	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000848;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000848;transcript_name=HG003_chrY_T0000848;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000848:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9481916	9483409	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000848;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000848;transcript_name=HG003_chrY_T0000848;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000848:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9483410	9483555	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000848;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000848;transcript_name=HG003_chrY_T0000848;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000848:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9483556	9483641	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000848;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000848;transcript_name=HG003_chrY_T0000848;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000848:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9483642	9483743	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000848;gene_id=HG003_chrY_G0000268;Parent=HG003_chrY_T0000848;transcript_name=HG003_chrY_T0000848;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000848:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9483410	9485402	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_13;gene_id=HG003_chrY_G0000269;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000269;Name=FAM197Y5
HG003_chrY	CAT	transcript	9483410	9485402	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000849;gene_id=HG003_chrY_G0000269;Parent=HG003_chrY_G0000269;transcript_name=HG003_chrY_T0000849;gene_name=FAM197Y5;ID=HG003_chrY_T0000849;Name=FAM197Y5
HG003_chrY	CAT	exon	9483410	9483555	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000849;gene_id=HG003_chrY_G0000269;Parent=HG003_chrY_T0000849;transcript_name=HG003_chrY_T0000849;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000849:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9483556	9485091	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000849;gene_id=HG003_chrY_G0000269;Parent=HG003_chrY_T0000849;transcript_name=HG003_chrY_T0000849;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000849:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9485092	9485402	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000849;gene_id=HG003_chrY_G0000269;Parent=HG003_chrY_T0000849;transcript_name=HG003_chrY_T0000849;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000849:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9486396	9489182	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1_1;gene_id=HG003_chrY_G0000270;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000270;Name=ENSG00000293749
HG003_chrY	CAT	transcript	9486396	9489182	1000	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_G0000270;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=HG003_chrY_T0000850;Name=ENSG00000293749
HG003_chrY	CAT	exon	9486396	9486488	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000850:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486489	9486767	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000850:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9486768	9486905	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000850:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486906	9487512	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000850:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487513	9487590	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000850:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487591	9487718	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000850:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487719	9487830	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000850:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487831	9487931	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000850:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487932	9488077	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000850:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488078	9488183	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000850:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488184	9488265	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000850:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488266	9488959	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000850:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488960	9489182	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000850;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000850;transcript_name=HG003_chrY_T0000850;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000850:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9486408	9489170	1000	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_G0000270;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=HG003_chrY_T0000852;Name=ENSG00000293749
HG003_chrY	CAT	exon	9486408	9486488	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000852:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486489	9486767	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000852:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9486768	9486905	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000852:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486906	9487512	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000852:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487513	9487590	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000852:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487591	9487718	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000852:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487719	9487830	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000852:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487831	9487938	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000852:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487939	9488077	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000852:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488078	9488183	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000852:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488184	9488265	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000852:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488266	9488959	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000852:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488960	9489170	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000852;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000852;transcript_name=HG003_chrY_T0000852;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000852:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9486417	9489177	1000	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_G0000270;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=HG003_chrY_T0000853;Name=ENSG00000293749
HG003_chrY	CAT	exon	9486417	9486488	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000853:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486489	9486767	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000853:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9486768	9486905	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000853:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486906	9487512	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000853:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487513	9487590	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000853:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487591	9487718	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000853:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487719	9487830	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000853:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487831	9487931	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000853:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487932	9488077	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000853:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488078	9488172	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000853:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488173	9488265	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000853:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488266	9488959	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000853:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488960	9489177	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000853;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000853;transcript_name=HG003_chrY_T0000853;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000853:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9486637	9489175	1000	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000854;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_G0000270;transcript_name=HG003_chrY_T0000854;gene_name=ENSG00000293749;ID=HG003_chrY_T0000854;Name=ENSG00000293749
HG003_chrY	CAT	exon	9486637	9486905	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000854;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000854;transcript_name=HG003_chrY_T0000854;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000854:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486906	9487512	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000854;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000854;transcript_name=HG003_chrY_T0000854;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000854:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487513	9487590	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000854;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000854;transcript_name=HG003_chrY_T0000854;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000854:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487591	9487718	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000854;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000854;transcript_name=HG003_chrY_T0000854;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000854:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487719	9487830	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000854;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000854;transcript_name=HG003_chrY_T0000854;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000854:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487831	9487931	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000854;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000854;transcript_name=HG003_chrY_T0000854;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000854:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487932	9488077	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000854;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000854;transcript_name=HG003_chrY_T0000854;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000854:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488078	9488183	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000854;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000854;transcript_name=HG003_chrY_T0000854;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000854:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488184	9488265	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000854;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000854;transcript_name=HG003_chrY_T0000854;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000854:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488266	9488959	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000854;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000854;transcript_name=HG003_chrY_T0000854;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000854:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488960	9489175	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000854;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000854;transcript_name=HG003_chrY_T0000854;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000854:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9486733	9489170	1000	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000855;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_G0000270;transcript_name=HG003_chrY_T0000855;gene_name=ENSG00000293749;ID=HG003_chrY_T0000855;Name=ENSG00000293749
HG003_chrY	CAT	exon	9486733	9486905	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000855;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000855;transcript_name=HG003_chrY_T0000855;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000855:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486906	9487512	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000855;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000855;transcript_name=HG003_chrY_T0000855;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000855:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487513	9487590	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000855;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000855;transcript_name=HG003_chrY_T0000855;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000855:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487591	9487718	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000855;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000855;transcript_name=HG003_chrY_T0000855;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000855:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487719	9487830	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000855;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000855;transcript_name=HG003_chrY_T0000855;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000855:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487831	9487938	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000855;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000855;transcript_name=HG003_chrY_T0000855;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000855:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487939	9488077	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000855;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000855;transcript_name=HG003_chrY_T0000855;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000855:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488078	9488183	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000855;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000855;transcript_name=HG003_chrY_T0000855;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000855:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488184	9488265	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000855;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000855;transcript_name=HG003_chrY_T0000855;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000855:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488266	9488959	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000855;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000855;transcript_name=HG003_chrY_T0000855;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000855:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488960	9489170	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000855;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000855;transcript_name=HG003_chrY_T0000855;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000855:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9486859	9489181	1000	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000856;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_G0000270;transcript_name=HG003_chrY_T0000856;gene_name=ENSG00000293749;ID=HG003_chrY_T0000856;Name=ENSG00000293749
HG003_chrY	CAT	exon	9486859	9486961	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000856;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000856;transcript_name=HG003_chrY_T0000856;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000856:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486962	9487530	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000856;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000856;transcript_name=HG003_chrY_T0000856;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000856:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487531	9487590	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000856;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000856;transcript_name=HG003_chrY_T0000856;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000856:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487591	9487718	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000856;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000856;transcript_name=HG003_chrY_T0000856;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000856:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487719	9487830	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000856;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000856;transcript_name=HG003_chrY_T0000856;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000856:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487831	9487931	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000856;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000856;transcript_name=HG003_chrY_T0000856;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000856:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487932	9488077	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000856;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000856;transcript_name=HG003_chrY_T0000856;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000856:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488078	9488183	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000856;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000856;transcript_name=HG003_chrY_T0000856;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000856:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488184	9488265	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000856;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000856;transcript_name=HG003_chrY_T0000856;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000856:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488266	9488959	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000856;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000856;transcript_name=HG003_chrY_T0000856;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000856:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488960	9489181	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000856;gene_id=HG003_chrY_G0000270;Parent=HG003_chrY_T0000856;transcript_name=HG003_chrY_T0000856;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000856:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9486402	9488982	.	+	.	source_gene_common_name=TSPY6P;source_gene=ENSG00000270073.1;gene_id=HG003_chrY_G0000271;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY6P;gene_sources=liftoff;ID=HG003_chrY_G0000271;Name=TSPY6P
HG003_chrY	CAT	transcript	9486402	9488982	1000	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_G0000271;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=HG003_chrY_T0000851;Name=TSPY6P
HG003_chrY	CAT	exon	9486402	9486620	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000851:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486621	9486638	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000851:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9486639	9486905	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000851:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9486906	9487512	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000851:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487513	9487590	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000851:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487591	9487718	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000851:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487719	9487830	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000851:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487831	9487931	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000851:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487932	9488077	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000851:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488078	9488183	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000851:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488184	9488265	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000851:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488266	9488959	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000851:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488960	9488982	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000851;gene_id=HG003_chrY_G0000271;Parent=HG003_chrY_T0000851;transcript_name=HG003_chrY_T0000851;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000851:6;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9487560	9489177	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1;gene_id=HG003_chrY_G0000272;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000272;Name=ENSG00000293749
HG003_chrY	CAT	transcript	9487560	9489168	1000	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000857;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_G0000272;transcript_name=HG003_chrY_T0000857;gene_name=ENSG00000293749;ID=HG003_chrY_T0000857;Name=ENSG00000293749
HG003_chrY	CAT	exon	9487560	9487590	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000857;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000857;transcript_name=HG003_chrY_T0000857;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000857:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9487591	9487718	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000857;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000857;transcript_name=HG003_chrY_T0000857;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000857:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9487719	9488077	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000857;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000857;transcript_name=HG003_chrY_T0000857;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000857:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488078	9488183	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000857;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000857;transcript_name=HG003_chrY_T0000857;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000857:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488184	9488265	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000857;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000857;transcript_name=HG003_chrY_T0000857;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000857:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488266	9488959	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000857;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000857;transcript_name=HG003_chrY_T0000857;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000857:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488960	9489168	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000857;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000857;transcript_name=HG003_chrY_T0000857;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000857:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9488105	9489177	1000	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000858;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_G0000272;transcript_name=HG003_chrY_T0000858;gene_name=ENSG00000293749;ID=HG003_chrY_T0000858;Name=ENSG00000293749
HG003_chrY	CAT	exon	9488105	9488265	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000858;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000858;transcript_name=HG003_chrY_T0000858;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000858:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9488266	9488959	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000858;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000858;transcript_name=HG003_chrY_T0000858;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000858:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9488960	9489177	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000858;gene_id=HG003_chrY_G0000272;Parent=HG003_chrY_T0000858;transcript_name=HG003_chrY_T0000858;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000858:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9496372	9504060	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000290448.1_3;gene_id=HG003_chrY_G0000273;gene_biotype=lncRNA;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000273;Name=FAM197Y9
HG003_chrY	CAT	transcript	9496372	9504060	1000	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000859;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_G0000273;transcript_name=HG003_chrY_T0000859;gene_name=FAM197Y9;ID=HG003_chrY_T0000859;Name=FAM197Y9
HG003_chrY	CAT	exon	9496372	9498498	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000859;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000859;transcript_name=HG003_chrY_T0000859;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000859:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9498499	9502049	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000859;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000859;transcript_name=HG003_chrY_T0000859;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000859:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9502050	9502135	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000859;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000859;transcript_name=HG003_chrY_T0000859;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000859:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9502136	9503940	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000859;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000859;transcript_name=HG003_chrY_T0000859;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000859:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9503941	9504060	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000859;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000859;transcript_name=HG003_chrY_T0000859;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000859:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9498439	9504042	1000	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000860;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_G0000273;transcript_name=HG003_chrY_T0000860;gene_name=FAM197Y9;ID=HG003_chrY_T0000860;Name=FAM197Y9
HG003_chrY	CAT	exon	9498439	9498498	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000860;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000860;transcript_name=HG003_chrY_T0000860;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000860:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9498499	9502049	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000860;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000860;transcript_name=HG003_chrY_T0000860;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000860:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9502050	9502208	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000860;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000860;transcript_name=HG003_chrY_T0000860;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000860:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9502209	9503708	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000860;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000860;transcript_name=HG003_chrY_T0000860;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000860:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9503709	9503854	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000860;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000860;transcript_name=HG003_chrY_T0000860;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000860:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9503855	9503940	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000860;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000860;transcript_name=HG003_chrY_T0000860;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000860:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9503941	9504042	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000860;gene_id=HG003_chrY_G0000273;Parent=HG003_chrY_T0000860;transcript_name=HG003_chrY_T0000860;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000860:3;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9503709	9505702	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000234830.9_3;gene_id=HG003_chrY_G0000274;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000274;Name=FAM197Y9
HG003_chrY	CAT	transcript	9503709	9505702	1000	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000861;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_G0000274;transcript_name=HG003_chrY_T0000861;gene_name=FAM197Y9;ID=HG003_chrY_T0000861;Name=FAM197Y9
HG003_chrY	CAT	exon	9503709	9503854	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000861;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000861;transcript_name=HG003_chrY_T0000861;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000861:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9503855	9503966	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000861;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000861;transcript_name=HG003_chrY_T0000861;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000861:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9503967	9504050	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000861;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000861;transcript_name=HG003_chrY_T0000861;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000861:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9504051	9505392	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000861;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000861;transcript_name=HG003_chrY_T0000861;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000861:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9505393	9505702	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000861;gene_id=HG003_chrY_G0000274;Parent=HG003_chrY_T0000861;transcript_name=HG003_chrY_T0000861;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000861:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9506695	9509463	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1_2;gene_id=HG003_chrY_G0000275;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000275;Name=ENSG00000293749
HG003_chrY	CAT	transcript	9506695	9509463	1000	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=HG003_chrY_T0000862;Name=ENSG00000293749
HG003_chrY	CAT	exon	9506695	9506787	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000862:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9506788	9507048	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000862:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507049	9507186	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000862:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507187	9507793	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000862:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507794	9507871	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000862:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507872	9507999	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000862:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508000	9508111	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000862:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508112	9508212	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000862:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508213	9508358	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000862:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508359	9508464	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000862:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508465	9508546	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000862:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000862:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509463	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000862;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000862;transcript_name=HG003_chrY_T0000862;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000862:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9506707	9509451	1000	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=HG003_chrY_T0000864;Name=ENSG00000293749
HG003_chrY	CAT	exon	9506707	9506787	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000864:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9506788	9507048	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000864:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507049	9507186	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000864:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507187	9507793	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000864:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507794	9507871	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000864:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507872	9507999	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000864:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508000	9508111	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000864:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508112	9508219	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000864:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508220	9508358	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000864:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508359	9508464	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000864:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508465	9508546	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000864:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000864:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509451	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000864;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000864;transcript_name=HG003_chrY_T0000864;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000864:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9506716	9509458	1000	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=HG003_chrY_T0000865;Name=ENSG00000293749
HG003_chrY	CAT	exon	9506716	9506787	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000865:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9506788	9507048	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000865:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507049	9507186	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000865:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507187	9507793	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000865:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507794	9507871	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000865:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507872	9507999	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000865:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508000	9508111	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000865:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508112	9508212	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000865:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508213	9508358	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000865:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508359	9508453	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000865:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508454	9508546	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000865:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000865:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509458	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000865;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000865;transcript_name=HG003_chrY_T0000865;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000865:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9506918	9509456	1000	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000866;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=HG003_chrY_T0000866;gene_name=ENSG00000293749;ID=HG003_chrY_T0000866;Name=ENSG00000293749
HG003_chrY	CAT	exon	9506918	9507186	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000866;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000866;transcript_name=HG003_chrY_T0000866;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000866:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507187	9507793	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000866;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000866;transcript_name=HG003_chrY_T0000866;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000866:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507794	9507871	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000866;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000866;transcript_name=HG003_chrY_T0000866;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000866:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507872	9507999	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000866;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000866;transcript_name=HG003_chrY_T0000866;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000866:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508000	9508111	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000866;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000866;transcript_name=HG003_chrY_T0000866;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000866:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508112	9508212	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000866;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000866;transcript_name=HG003_chrY_T0000866;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000866:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508213	9508358	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000866;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000866;transcript_name=HG003_chrY_T0000866;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000866:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508359	9508464	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000866;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000866;transcript_name=HG003_chrY_T0000866;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000866:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508465	9508546	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000866;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000866;transcript_name=HG003_chrY_T0000866;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000866:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000866;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000866;transcript_name=HG003_chrY_T0000866;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000866:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509456	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000866;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000866;transcript_name=HG003_chrY_T0000866;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000866:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9507014	9509451	1000	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000867;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=HG003_chrY_T0000867;gene_name=ENSG00000293749;ID=HG003_chrY_T0000867;Name=ENSG00000293749
HG003_chrY	CAT	exon	9507014	9507186	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000867;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000867;transcript_name=HG003_chrY_T0000867;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000867:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507187	9507793	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000867;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000867;transcript_name=HG003_chrY_T0000867;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000867:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507794	9507871	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000867;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000867;transcript_name=HG003_chrY_T0000867;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000867:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507872	9507999	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000867;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000867;transcript_name=HG003_chrY_T0000867;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000867:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508000	9508111	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000867;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000867;transcript_name=HG003_chrY_T0000867;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000867:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508112	9508219	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000867;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000867;transcript_name=HG003_chrY_T0000867;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000867:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508220	9508358	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000867;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000867;transcript_name=HG003_chrY_T0000867;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000867:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508359	9508464	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000867;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000867;transcript_name=HG003_chrY_T0000867;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000867:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508465	9508546	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000867;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000867;transcript_name=HG003_chrY_T0000867;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000867:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000867;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000867;transcript_name=HG003_chrY_T0000867;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000867:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509451	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000867;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000867;transcript_name=HG003_chrY_T0000867;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000867:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9507140	9509462	1000	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000868;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_G0000275;transcript_name=HG003_chrY_T0000868;gene_name=ENSG00000293749;ID=HG003_chrY_T0000868;Name=ENSG00000293749
HG003_chrY	CAT	exon	9507140	9507242	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000868;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000868;transcript_name=HG003_chrY_T0000868;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000868:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507243	9507811	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000868;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000868;transcript_name=HG003_chrY_T0000868;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000868:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507812	9507871	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000868;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000868;transcript_name=HG003_chrY_T0000868;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000868:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507872	9507999	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000868;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000868;transcript_name=HG003_chrY_T0000868;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000868:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508000	9508111	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000868;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000868;transcript_name=HG003_chrY_T0000868;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000868:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508112	9508212	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000868;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000868;transcript_name=HG003_chrY_T0000868;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000868:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508213	9508358	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000868;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000868;transcript_name=HG003_chrY_T0000868;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000868:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508359	9508464	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000868;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000868;transcript_name=HG003_chrY_T0000868;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000868:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508465	9508546	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000868;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000868;transcript_name=HG003_chrY_T0000868;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000868:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000868;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000868;transcript_name=HG003_chrY_T0000868;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000868:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509462	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000868;gene_id=HG003_chrY_G0000275;Parent=HG003_chrY_T0000868;transcript_name=HG003_chrY_T0000868;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000868:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9506701	9509263	.	+	.	source_gene_common_name=TSPY6P;source_gene=ENSG00000270073.1_2;gene_id=HG003_chrY_G0000276;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY6P;gene_sources=liftoff;ID=HG003_chrY_G0000276;Name=TSPY6P
HG003_chrY	CAT	transcript	9506701	9509263	1000	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_G0000276;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=HG003_chrY_T0000863;Name=TSPY6P
HG003_chrY	CAT	exon	9506701	9506911	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000863:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9506912	9506919	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000863:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9506920	9507186	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000863:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507187	9507793	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000863:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9507794	9507871	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000863:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507872	9507999	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000863:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508000	9508111	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000863:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508112	9508212	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000863:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508213	9508358	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000863:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508359	9508464	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000863:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508465	9508546	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000863:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000863:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509263	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000863;gene_id=HG003_chrY_G0000276;Parent=HG003_chrY_T0000863;transcript_name=HG003_chrY_T0000863;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000863:6;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9507841	9509458	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1;gene_id=HG003_chrY_G0000277;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000277;Name=ENSG00000293749
HG003_chrY	CAT	transcript	9507841	9509449	1000	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000869;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_G0000277;transcript_name=HG003_chrY_T0000869;gene_name=ENSG00000293749;ID=HG003_chrY_T0000869;Name=ENSG00000293749
HG003_chrY	CAT	exon	9507841	9507871	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000869;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000869;transcript_name=HG003_chrY_T0000869;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000869:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9507872	9507999	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000869;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000869;transcript_name=HG003_chrY_T0000869;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000869:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508000	9508358	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000869;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000869;transcript_name=HG003_chrY_T0000869;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000869:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508359	9508464	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000869;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000869;transcript_name=HG003_chrY_T0000869;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000869:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9508465	9508546	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000869;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000869;transcript_name=HG003_chrY_T0000869;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000869:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000869;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000869;transcript_name=HG003_chrY_T0000869;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000869:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509449	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000869;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000869;transcript_name=HG003_chrY_T0000869;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000869:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9508386	9509458	1000	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000870;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_G0000277;transcript_name=HG003_chrY_T0000870;gene_name=ENSG00000293749;ID=HG003_chrY_T0000870;Name=ENSG00000293749
HG003_chrY	CAT	exon	9508386	9508546	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000870;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000870;transcript_name=HG003_chrY_T0000870;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000870:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9508547	9509240	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000870;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000870;transcript_name=HG003_chrY_T0000870;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000870:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9509241	9509458	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000870;gene_id=HG003_chrY_G0000277;Parent=HG003_chrY_T0000870;transcript_name=HG003_chrY_T0000870;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000870:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9516684	9524359	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000290448.1_2;gene_id=HG003_chrY_G0000278;gene_biotype=lncRNA;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000278;Name=FAM197Y9
HG003_chrY	CAT	transcript	9516684	9524359	1000	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000871;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_G0000278;transcript_name=HG003_chrY_T0000871;gene_name=FAM197Y9;ID=HG003_chrY_T0000871;Name=FAM197Y9
HG003_chrY	CAT	exon	9516684	9518797	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000871;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000871;transcript_name=HG003_chrY_T0000871;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000871:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9518798	9522346	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000871;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000871;transcript_name=HG003_chrY_T0000871;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000871:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9522347	9522432	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000871;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000871;transcript_name=HG003_chrY_T0000871;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000871:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9522433	9524239	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000871;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000871;transcript_name=HG003_chrY_T0000871;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000871:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9524240	9524359	.	-	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000871;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000871;transcript_name=HG003_chrY_T0000871;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000871:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9518738	9524341	1000	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000872;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_G0000278;transcript_name=HG003_chrY_T0000872;gene_name=FAM197Y9;ID=HG003_chrY_T0000872;Name=FAM197Y9
HG003_chrY	CAT	exon	9518738	9518797	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000872;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000872;transcript_name=HG003_chrY_T0000872;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000872:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9518798	9522346	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000872;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000872;transcript_name=HG003_chrY_T0000872;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000872:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9522347	9522505	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000872;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000872;transcript_name=HG003_chrY_T0000872;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000872:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9522506	9524007	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000872;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000872;transcript_name=HG003_chrY_T0000872;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000872:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9524008	9524153	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000872;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000872;transcript_name=HG003_chrY_T0000872;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000872:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9524154	9524239	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000872;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000872;transcript_name=HG003_chrY_T0000872;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000872:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9524240	9524341	.	-	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000872;gene_id=HG003_chrY_G0000278;Parent=HG003_chrY_T0000872;transcript_name=HG003_chrY_T0000872;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000872:3;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9524008	9526001	.	-	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000234830.9_7;gene_id=HG003_chrY_G0000279;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000279;Name=FAM197Y9
HG003_chrY	CAT	transcript	9524008	9526001	1000	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000873;gene_id=HG003_chrY_G0000279;Parent=HG003_chrY_G0000279;transcript_name=HG003_chrY_T0000873;gene_name=FAM197Y9;ID=HG003_chrY_T0000873;Name=FAM197Y9
HG003_chrY	CAT	exon	9524008	9524153	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000873;gene_id=HG003_chrY_G0000279;Parent=HG003_chrY_T0000873;transcript_name=HG003_chrY_T0000873;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000873:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9524154	9524265	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000873;gene_id=HG003_chrY_G0000279;Parent=HG003_chrY_T0000873;transcript_name=HG003_chrY_T0000873;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000873:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9524266	9524349	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000873;gene_id=HG003_chrY_G0000279;Parent=HG003_chrY_T0000873;transcript_name=HG003_chrY_T0000873;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000873:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9524350	9525691	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000873;gene_id=HG003_chrY_G0000279;Parent=HG003_chrY_T0000873;transcript_name=HG003_chrY_T0000873;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0000873:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9525692	9526001	.	-	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9_7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9_7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0000873;gene_id=HG003_chrY_G0000279;Parent=HG003_chrY_T0000873;transcript_name=HG003_chrY_T0000873;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0000873:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9526954	9529750	.	+	.	source_gene_common_name=TSPY10;source_gene=ENSG00000236424.7;gene_id=HG003_chrY_G0000280;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff;ID=HG003_chrY_G0000280;Name=TSPY10
HG003_chrY	CAT	transcript	9526954	9529750	100	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_G0000280;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=HG003_chrY_T0000874;Name=TSPY10
HG003_chrY	CAT	exon	9526954	9527485	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=exon:HG003_chrY_T0000874:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9527000	9527485	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000874:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9527000	9527002	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000874;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9527486	9528092	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=intron:HG003_chrY_T0000874:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528093	9528170	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=exon:HG003_chrY_T0000874:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528093	9528170	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000874:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528171	9528298	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=intron:HG003_chrY_T0000874:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528299	9528410	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=exon:HG003_chrY_T0000874:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528299	9528410	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000874:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528411	9528511	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=intron:HG003_chrY_T0000874:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528512	9528657	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=exon:HG003_chrY_T0000874:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528512	9528657	.	+	2	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000874:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528658	9528763	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=intron:HG003_chrY_T0000874:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528764	9528845	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=exon:HG003_chrY_T0000874:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528764	9528845	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000874:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528846	9529539	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=intron:HG003_chrY_T0000874:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9529540	9529750	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=exon:HG003_chrY_T0000874:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9529540	9529562	.	+	2	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000874:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9529560	9529562	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000874;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000874;transcript_name=HG003_chrY_T0000874;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000874;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9527000	9529749	100	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_G0000280;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=HG003_chrY_T0000875;Name=TSPY10
HG003_chrY	CAT	exon	9527000	9527485	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=exon:HG003_chrY_T0000875:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9527000	9527485	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000875:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9527000	9527002	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000875;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9527486	9528092	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=intron:HG003_chrY_T0000875:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528093	9528170	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=exon:HG003_chrY_T0000875:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528093	9528170	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000875:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528171	9528298	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=intron:HG003_chrY_T0000875:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528299	9528410	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=exon:HG003_chrY_T0000875:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528299	9528410	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000875:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528411	9528511	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=intron:HG003_chrY_T0000875:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528512	9528657	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=exon:HG003_chrY_T0000875:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528512	9528657	.	+	2	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000875:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528658	9528752	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=intron:HG003_chrY_T0000875:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528753	9528845	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=exon:HG003_chrY_T0000875:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9528753	9528815	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000875:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9528813	9528815	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000875;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528846	9529539	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=intron:HG003_chrY_T0000875:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9529540	9529749	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000875;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000875;transcript_name=HG003_chrY_T0000875;gene_name=TSPY10;ID=exon:HG003_chrY_T0000875:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9527000	9529756	1000	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000876;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_G0000280;transcript_name=HG003_chrY_T0000876;gene_name=TSPY10;ID=HG003_chrY_T0000876;Name=TSPY10
HG003_chrY	CAT	exon	9527000	9527485	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000876;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000876;transcript_name=HG003_chrY_T0000876;gene_name=TSPY10;ID=exon:HG003_chrY_T0000876:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9527486	9528092	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000876;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000876;transcript_name=HG003_chrY_T0000876;gene_name=TSPY10;ID=intron:HG003_chrY_T0000876:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528093	9528170	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000876;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000876;transcript_name=HG003_chrY_T0000876;gene_name=TSPY10;ID=exon:HG003_chrY_T0000876:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528171	9528298	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000876;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000876;transcript_name=HG003_chrY_T0000876;gene_name=TSPY10;ID=intron:HG003_chrY_T0000876:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528299	9528845	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000876;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000876;transcript_name=HG003_chrY_T0000876;gene_name=TSPY10;ID=exon:HG003_chrY_T0000876:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528846	9528972	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000876;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000876;transcript_name=HG003_chrY_T0000876;gene_name=TSPY10;ID=intron:HG003_chrY_T0000876:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528973	9529756	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000876;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000876;transcript_name=HG003_chrY_T0000876;gene_name=TSPY10;ID=exon:HG003_chrY_T0000876:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9528360	9529741	1000	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000877;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_G0000280;transcript_name=HG003_chrY_T0000877;gene_name=TSPY10;ID=HG003_chrY_T0000877;Name=TSPY10
HG003_chrY	CAT	exon	9528360	9528657	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000877;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000877;transcript_name=HG003_chrY_T0000877;gene_name=TSPY10;ID=exon:HG003_chrY_T0000877:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528658	9528763	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000877;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000877;transcript_name=HG003_chrY_T0000877;gene_name=TSPY10;ID=intron:HG003_chrY_T0000877:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9528764	9528845	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000877;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000877;transcript_name=HG003_chrY_T0000877;gene_name=TSPY10;ID=exon:HG003_chrY_T0000877:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9528846	9529539	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000877;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000877;transcript_name=HG003_chrY_T0000877;gene_name=TSPY10;ID=intron:HG003_chrY_T0000877:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9529540	9529741	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000877;gene_id=HG003_chrY_G0000280;Parent=HG003_chrY_T0000877;transcript_name=HG003_chrY_T0000877;gene_name=TSPY10;ID=exon:HG003_chrY_T0000877:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9538913	9544659	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000281;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000281;Name=FAM197Y5
HG003_chrY	CAT	transcript	9538913	9544659	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000878;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_G0000281;transcript_name=HG003_chrY_T0000878;gene_name=FAM197Y5;ID=HG003_chrY_T0000878;Name=FAM197Y5
HG003_chrY	CAT	exon	9538913	9539102	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000878;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000878;transcript_name=HG003_chrY_T0000878;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000878:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9539103	9542652	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000878;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000878;transcript_name=HG003_chrY_T0000878;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000878:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9542653	9542738	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000878;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000878;transcript_name=HG003_chrY_T0000878;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000878:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9542739	9544545	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000878;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000878;transcript_name=HG003_chrY_T0000878;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000878:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9544546	9544659	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000878;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000878;transcript_name=HG003_chrY_T0000878;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000878:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9539043	9544647	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000879;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_G0000281;transcript_name=HG003_chrY_T0000879;gene_name=FAM197Y5;ID=HG003_chrY_T0000879;Name=FAM197Y5
HG003_chrY	CAT	exon	9539043	9539102	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000879;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000879;transcript_name=HG003_chrY_T0000879;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000879:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9539103	9542652	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000879;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000879;transcript_name=HG003_chrY_T0000879;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000879:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9542653	9542811	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000879;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000879;transcript_name=HG003_chrY_T0000879;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000879:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9542812	9544313	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000879;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000879;transcript_name=HG003_chrY_T0000879;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000879:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9544314	9544459	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000879;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000879;transcript_name=HG003_chrY_T0000879;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000879:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9544460	9544545	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000879;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000879;transcript_name=HG003_chrY_T0000879;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000879:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9544546	9544647	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000879;gene_id=HG003_chrY_G0000281;Parent=HG003_chrY_T0000879;transcript_name=HG003_chrY_T0000879;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000879:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9544314	9546306	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_17;gene_id=HG003_chrY_G0000282;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000282;Name=FAM197Y5
HG003_chrY	CAT	transcript	9544314	9546306	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_17;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_17;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000880;gene_id=HG003_chrY_G0000282;Parent=HG003_chrY_G0000282;transcript_name=HG003_chrY_T0000880;gene_name=FAM197Y5;ID=HG003_chrY_T0000880;Name=FAM197Y5
HG003_chrY	CAT	exon	9544314	9544459	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_17;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_17;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000880;gene_id=HG003_chrY_G0000282;Parent=HG003_chrY_T0000880;transcript_name=HG003_chrY_T0000880;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000880:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9544460	9545995	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_17;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_17;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000880;gene_id=HG003_chrY_G0000282;Parent=HG003_chrY_T0000880;transcript_name=HG003_chrY_T0000880;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000880:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9545996	9546306	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_17;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_17;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000880;gene_id=HG003_chrY_G0000282;Parent=HG003_chrY_T0000880;transcript_name=HG003_chrY_T0000880;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000880:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9547260	9550074	.	+	.	source_gene_common_name=TSPY4;source_gene=ENSG00000233803.9;gene_id=HG003_chrY_G0000283;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff;ID=HG003_chrY_G0000283;Name=TSPY4
HG003_chrY	CAT	transcript	9547260	9550074	100	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_G0000283;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=HG003_chrY_T0000881;Name=TSPY4
HG003_chrY	CAT	exon	9547260	9547809	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=exon:HG003_chrY_T0000881:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9547306	9547809	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000881:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9547306	9547308	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000881;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9547810	9548416	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=intron:HG003_chrY_T0000881:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548417	9548494	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=exon:HG003_chrY_T0000881:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548417	9548494	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000881:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548495	9548622	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=intron:HG003_chrY_T0000881:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548623	9548734	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=exon:HG003_chrY_T0000881:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548623	9548734	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000881:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548735	9548835	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=intron:HG003_chrY_T0000881:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548836	9548981	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=exon:HG003_chrY_T0000881:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548836	9548981	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000881:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548982	9549087	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=intron:HG003_chrY_T0000881:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549088	9549169	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=exon:HG003_chrY_T0000881:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9549088	9549169	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000881:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9549170	9549863	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=intron:HG003_chrY_T0000881:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549864	9550074	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=exon:HG003_chrY_T0000881:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9549864	9549886	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000881:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9549884	9549886	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000881;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000881;transcript_name=HG003_chrY_T0000881;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000881;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9547260	9549953	100	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_G0000283;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=HG003_chrY_T0000882;Name=TSPY4
HG003_chrY	CAT	exon	9547260	9547392	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=exon:HG003_chrY_T0000882:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9547306	9547392	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000882:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9547306	9547308	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000882;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9547393	9547671	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=intron:HG003_chrY_T0000882:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9547672	9547809	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=exon:HG003_chrY_T0000882:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9547672	9547809	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000882:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9547810	9548416	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=intron:HG003_chrY_T0000882:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548417	9548494	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=exon:HG003_chrY_T0000882:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548417	9548494	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000882:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548495	9548622	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=intron:HG003_chrY_T0000882:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548623	9548734	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=exon:HG003_chrY_T0000882:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548623	9548734	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000882:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548735	9548835	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=intron:HG003_chrY_T0000882:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548836	9548981	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=exon:HG003_chrY_T0000882:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548836	9548981	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000882:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548982	9549087	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=intron:HG003_chrY_T0000882:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549088	9549169	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=exon:HG003_chrY_T0000882:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9549088	9549169	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000882:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9549170	9549863	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=intron:HG003_chrY_T0000882:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549864	9549953	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=exon:HG003_chrY_T0000882:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9549864	9549886	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000882:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9549884	9549886	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000882;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000882;transcript_name=HG003_chrY_T0000882;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000882;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9547306	9550073	100	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_G0000283;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=HG003_chrY_T0000883;Name=TSPY4
HG003_chrY	CAT	exon	9547306	9547809	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=exon:HG003_chrY_T0000883:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9547306	9547809	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000883:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9547306	9547308	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000883;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9547810	9548416	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=intron:HG003_chrY_T0000883:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548417	9548494	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=exon:HG003_chrY_T0000883:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548417	9548494	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000883:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548495	9548622	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=intron:HG003_chrY_T0000883:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548623	9548734	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=exon:HG003_chrY_T0000883:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548623	9548734	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000883:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548735	9548835	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=intron:HG003_chrY_T0000883:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548836	9548981	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=exon:HG003_chrY_T0000883:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9548836	9548981	.	+	2	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000883:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548982	9549076	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=intron:HG003_chrY_T0000883:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549077	9549169	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=exon:HG003_chrY_T0000883:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9549077	9549139	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000883:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9549137	9549139	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000883;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9549170	9549863	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=intron:HG003_chrY_T0000883:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549864	9550073	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000883;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000883;transcript_name=HG003_chrY_T0000883;gene_name=TSPY4;ID=exon:HG003_chrY_T0000883:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9547306	9550080	1000	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000884;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_G0000283;transcript_name=HG003_chrY_T0000884;gene_name=TSPY4;ID=HG003_chrY_T0000884;Name=TSPY4
HG003_chrY	CAT	exon	9547306	9547809	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000884;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000884;transcript_name=HG003_chrY_T0000884;gene_name=TSPY4;ID=exon:HG003_chrY_T0000884:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9547810	9548416	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000884;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000884;transcript_name=HG003_chrY_T0000884;gene_name=TSPY4;ID=intron:HG003_chrY_T0000884:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548417	9548494	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000884;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000884;transcript_name=HG003_chrY_T0000884;gene_name=TSPY4;ID=exon:HG003_chrY_T0000884:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548495	9548622	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000884;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000884;transcript_name=HG003_chrY_T0000884;gene_name=TSPY4;ID=intron:HG003_chrY_T0000884:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9548623	9549169	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000884;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000884;transcript_name=HG003_chrY_T0000884;gene_name=TSPY4;ID=exon:HG003_chrY_T0000884:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9549170	9549296	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000884;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000884;transcript_name=HG003_chrY_T0000884;gene_name=TSPY4;ID=intron:HG003_chrY_T0000884:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549297	9550080	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000884;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000884;transcript_name=HG003_chrY_T0000884;gene_name=TSPY4;ID=exon:HG003_chrY_T0000884:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9548684	9550065	1000	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000885;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_G0000283;transcript_name=HG003_chrY_T0000885;gene_name=TSPY4;ID=HG003_chrY_T0000885;Name=TSPY4
HG003_chrY	CAT	exon	9548684	9548981	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000885;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000885;transcript_name=HG003_chrY_T0000885;gene_name=TSPY4;ID=exon:HG003_chrY_T0000885:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9548982	9549076	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000885;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000885;transcript_name=HG003_chrY_T0000885;gene_name=TSPY4;ID=intron:HG003_chrY_T0000885:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549077	9549169	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000885;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000885;transcript_name=HG003_chrY_T0000885;gene_name=TSPY4;ID=exon:HG003_chrY_T0000885:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9549170	9549863	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000885;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000885;transcript_name=HG003_chrY_T0000885;gene_name=TSPY4;ID=intron:HG003_chrY_T0000885:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9549864	9550065	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000885;gene_id=HG003_chrY_G0000283;Parent=HG003_chrY_T0000885;transcript_name=HG003_chrY_T0000885;gene_name=TSPY4;ID=exon:HG003_chrY_T0000885:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9557276	9565174	.	-	.	source_gene_common_name=FAM197Y6;source_gene=ENSG00000237802.7_1;gene_id=HG003_chrY_G0000284;gene_biotype=lncRNA;gene_name=FAM197Y6;gene_sources=liftoff;ID=HG003_chrY_G0000284;Name=FAM197Y6
HG003_chrY	CAT	transcript	9557276	9565174	1000	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000886;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_G0000284;transcript_name=HG003_chrY_T0000886;gene_name=FAM197Y6;ID=HG003_chrY_T0000886;Name=FAM197Y6
HG003_chrY	CAT	exon	9557276	9559403	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000886;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000886;transcript_name=HG003_chrY_T0000886;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000886:0;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9559404	9562958	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000886;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000886;transcript_name=HG003_chrY_T0000886;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000886:0;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9562959	9563044	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000886;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000886;transcript_name=HG003_chrY_T0000886;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000886:1;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9563045	9564853	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000886;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000886;transcript_name=HG003_chrY_T0000886;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000886:1;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9564854	9564963	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000886;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000886;transcript_name=HG003_chrY_T0000886;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000886:2;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9564964	9565159	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000886;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000886;transcript_name=HG003_chrY_T0000886;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000886:2;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9565160	9565174	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000886;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000886;transcript_name=HG003_chrY_T0000886;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000886:3;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9559344	9564955	1000	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000887;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_G0000284;transcript_name=HG003_chrY_T0000887;gene_name=FAM197Y6;ID=HG003_chrY_T0000887;Name=FAM197Y6
HG003_chrY	CAT	exon	9559344	9559403	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000887;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000887;transcript_name=HG003_chrY_T0000887;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000887:0;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9559404	9562958	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000887;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000887;transcript_name=HG003_chrY_T0000887;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000887:0;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9562959	9563117	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000887;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000887;transcript_name=HG003_chrY_T0000887;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000887:1;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9563118	9564621	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000887;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000887;transcript_name=HG003_chrY_T0000887;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000887:1;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9564622	9564767	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000887;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000887;transcript_name=HG003_chrY_T0000887;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000887:2;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9564768	9564853	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000887;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000887;transcript_name=HG003_chrY_T0000887;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000887:2;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9564854	9564955	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000887;gene_id=HG003_chrY_G0000284;Parent=HG003_chrY_T0000887;transcript_name=HG003_chrY_T0000887;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000887:3;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9564622	9566614	.	-	.	source_gene_common_name=ENSG00000286173;source_gene=ENSG00000286173.1;gene_id=HG003_chrY_G0000285;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000286173;gene_sources=liftoff;ID=HG003_chrY_G0000285;Name=ENSG00000286173
HG003_chrY	CAT	transcript	9564622	9566614	1000	-	.	source_transcript=ENST00000420524.4;source_transcript_name=ENST00000420524;source_gene=ENSG00000286173.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286173.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420524.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000420524.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286173;transcript_id=HG003_chrY_T0000888;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_G0000285;transcript_name=HG003_chrY_T0000888;gene_name=ENSG00000286173;ID=HG003_chrY_T0000888;Name=ENSG00000286173
HG003_chrY	CAT	exon	9564622	9564767	.	-	.	source_transcript=ENST00000420524.4;source_transcript_name=ENST00000420524;source_gene=ENSG00000286173.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286173.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420524.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000420524.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286173;transcript_id=HG003_chrY_T0000888;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000888;transcript_name=HG003_chrY_T0000888;gene_name=ENSG00000286173;ID=exon:HG003_chrY_T0000888:0;Name=ENSG00000286173;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9564768	9566303	.	-	.	source_transcript=ENST00000420524.4;source_transcript_name=ENST00000420524;source_gene=ENSG00000286173.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286173.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420524.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000420524.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286173;transcript_id=HG003_chrY_T0000888;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000888;transcript_name=HG003_chrY_T0000888;gene_name=ENSG00000286173;ID=intron:HG003_chrY_T0000888:0;Name=ENSG00000286173;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9566304	9566614	.	-	.	source_transcript=ENST00000420524.4;source_transcript_name=ENST00000420524;source_gene=ENSG00000286173.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286173.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420524.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000420524.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286173;transcript_id=HG003_chrY_T0000888;gene_id=HG003_chrY_G0000285;Parent=HG003_chrY_T0000888;transcript_name=HG003_chrY_T0000888;gene_name=ENSG00000286173;ID=exon:HG003_chrY_T0000888:1;Name=ENSG00000286173;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9567568	9570365	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;gene_id=HG003_chrY_G0000286;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000286;Name=TSPY3
HG003_chrY	CAT	transcript	9567568	9570365	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_G0000286;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=HG003_chrY_T0000889;Name=TSPY3
HG003_chrY	CAT	exon	9567568	9568099	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=exon:HG003_chrY_T0000889:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9567614	9568099	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000889:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9567614	9567616	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000889;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568100	9568706	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=intron:HG003_chrY_T0000889:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568707	9568784	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=exon:HG003_chrY_T0000889:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9568707	9568784	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000889:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568785	9568912	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=intron:HG003_chrY_T0000889:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568913	9569024	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=exon:HG003_chrY_T0000889:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9568913	9569024	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000889:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569025	9569125	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=intron:HG003_chrY_T0000889:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569126	9569271	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=exon:HG003_chrY_T0000889:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9569126	9569271	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000889:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569272	9569377	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=intron:HG003_chrY_T0000889:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569378	9569459	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=exon:HG003_chrY_T0000889:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9569378	9569459	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000889:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569460	9570153	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=intron:HG003_chrY_T0000889:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9570154	9570365	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=exon:HG003_chrY_T0000889:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9570154	9570176	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000889:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9570174	9570176	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000889;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000889;transcript_name=HG003_chrY_T0000889;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000889;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9567614	9570364	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_G0000286;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=HG003_chrY_T0000890;Name=TSPY3
HG003_chrY	CAT	exon	9567614	9568099	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=exon:HG003_chrY_T0000890:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9567614	9568099	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000890:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9567614	9567616	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000890;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568100	9568706	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=intron:HG003_chrY_T0000890:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568707	9568784	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=exon:HG003_chrY_T0000890:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9568707	9568784	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000890:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568785	9568912	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=intron:HG003_chrY_T0000890:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568913	9569024	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=exon:HG003_chrY_T0000890:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9568913	9569024	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000890:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569025	9569125	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=intron:HG003_chrY_T0000890:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569126	9569271	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=exon:HG003_chrY_T0000890:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9569126	9569271	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000890:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569272	9569366	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=intron:HG003_chrY_T0000890:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569367	9569459	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=exon:HG003_chrY_T0000890:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9569367	9569429	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000890:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9569427	9569429	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000890;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569460	9570153	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=intron:HG003_chrY_T0000890:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9570154	9570364	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000890;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000890;transcript_name=HG003_chrY_T0000890;gene_name=TSPY3;ID=exon:HG003_chrY_T0000890:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9567614	9570176	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_G0000286;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=HG003_chrY_T0000891;Name=TSPY3
HG003_chrY	CAT	exon	9567614	9567700	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=exon:HG003_chrY_T0000891:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9567614	9567700	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000891:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9567614	9567616	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000891;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9567701	9567961	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=intron:HG003_chrY_T0000891:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9567962	9568099	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=exon:HG003_chrY_T0000891:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9567962	9568099	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000891:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568100	9568706	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=intron:HG003_chrY_T0000891:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568707	9568784	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=exon:HG003_chrY_T0000891:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9568707	9568784	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000891:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568785	9568912	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=intron:HG003_chrY_T0000891:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568913	9569024	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=exon:HG003_chrY_T0000891:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9568913	9569024	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000891:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569025	9569125	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=intron:HG003_chrY_T0000891:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569126	9569271	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=exon:HG003_chrY_T0000891:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9569126	9569271	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000891:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569272	9569377	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=intron:HG003_chrY_T0000891:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569378	9569459	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=exon:HG003_chrY_T0000891:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9569378	9569459	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000891:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569460	9570153	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=intron:HG003_chrY_T0000891:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9570154	9570176	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=exon:HG003_chrY_T0000891:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9570154	9570176	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000891:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9570174	9570176	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000891;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000891;transcript_name=HG003_chrY_T0000891;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000891;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9567614	9570371	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000892;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_G0000286;transcript_name=HG003_chrY_T0000892;gene_name=TSPY3;ID=HG003_chrY_T0000892;Name=TSPY3
HG003_chrY	CAT	exon	9567614	9568099	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000892;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000892;transcript_name=HG003_chrY_T0000892;gene_name=TSPY3;ID=exon:HG003_chrY_T0000892:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568100	9568706	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000892;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000892;transcript_name=HG003_chrY_T0000892;gene_name=TSPY3;ID=intron:HG003_chrY_T0000892:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568707	9568784	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000892;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000892;transcript_name=HG003_chrY_T0000892;gene_name=TSPY3;ID=exon:HG003_chrY_T0000892:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9568785	9568912	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000892;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000892;transcript_name=HG003_chrY_T0000892;gene_name=TSPY3;ID=intron:HG003_chrY_T0000892:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9568913	9569459	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000892;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000892;transcript_name=HG003_chrY_T0000892;gene_name=TSPY3;ID=exon:HG003_chrY_T0000892:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569460	9569586	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000892;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000892;transcript_name=HG003_chrY_T0000892;gene_name=TSPY3;ID=intron:HG003_chrY_T0000892:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569587	9570371	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000892;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000892;transcript_name=HG003_chrY_T0000892;gene_name=TSPY3;ID=exon:HG003_chrY_T0000892:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9568974	9570356	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000893;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_G0000286;transcript_name=HG003_chrY_T0000893;gene_name=TSPY3;ID=HG003_chrY_T0000893;Name=TSPY3
HG003_chrY	CAT	exon	9568974	9569271	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000893;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000893;transcript_name=HG003_chrY_T0000893;gene_name=TSPY3;ID=exon:HG003_chrY_T0000893:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569272	9569366	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000893;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000893;transcript_name=HG003_chrY_T0000893;gene_name=TSPY3;ID=intron:HG003_chrY_T0000893:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9569367	9569459	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000893;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000893;transcript_name=HG003_chrY_T0000893;gene_name=TSPY3;ID=exon:HG003_chrY_T0000893:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9569460	9570153	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000893;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000893;transcript_name=HG003_chrY_T0000893;gene_name=TSPY3;ID=intron:HG003_chrY_T0000893:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9570154	9570356	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000893;gene_id=HG003_chrY_G0000286;Parent=HG003_chrY_T0000893;transcript_name=HG003_chrY_T0000893;gene_name=TSPY3;ID=exon:HG003_chrY_T0000893:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9577598	9585491	.	-	.	source_gene_common_name=FAM197Y6;source_gene=ENSG00000237802.7;gene_id=HG003_chrY_G0000287;gene_biotype=lncRNA;gene_name=FAM197Y6;gene_sources=liftoff;ID=HG003_chrY_G0000287;Name=FAM197Y6
HG003_chrY	CAT	transcript	9577598	9585491	1000	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000894;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_G0000287;transcript_name=HG003_chrY_T0000894;gene_name=FAM197Y6;ID=HG003_chrY_T0000894;Name=FAM197Y6
HG003_chrY	CAT	exon	9577598	9579726	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000894;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000894;transcript_name=HG003_chrY_T0000894;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000894:0;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9579727	9583277	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000894;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000894;transcript_name=HG003_chrY_T0000894;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000894:0;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9583278	9583363	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000894;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000894;transcript_name=HG003_chrY_T0000894;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000894:1;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9583364	9585170	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000894;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000894;transcript_name=HG003_chrY_T0000894;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000894:1;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9585171	9585280	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000894;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000894;transcript_name=HG003_chrY_T0000894;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000894:2;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9585281	9585476	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000894;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000894;transcript_name=HG003_chrY_T0000894;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000894:2;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9585477	9585491	.	-	.	source_transcript=ENST00000442145.5;source_transcript_name=FAM197Y6-201;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000442145.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000442145.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000894;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000894;transcript_name=HG003_chrY_T0000894;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000894:3;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9579667	9585272	1000	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000895;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_G0000287;transcript_name=HG003_chrY_T0000895;gene_name=FAM197Y6;ID=HG003_chrY_T0000895;Name=FAM197Y6
HG003_chrY	CAT	exon	9579667	9579726	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000895;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000895;transcript_name=HG003_chrY_T0000895;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000895:0;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9579727	9583277	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000895;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000895;transcript_name=HG003_chrY_T0000895;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000895:0;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9583278	9583436	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000895;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000895;transcript_name=HG003_chrY_T0000895;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000895:1;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9583437	9584938	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000895;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000895;transcript_name=HG003_chrY_T0000895;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000895:1;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9584939	9585084	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000895;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000895;transcript_name=HG003_chrY_T0000895;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000895:2;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9585085	9585170	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000895;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000895;transcript_name=HG003_chrY_T0000895;gene_name=FAM197Y6;ID=intron:HG003_chrY_T0000895:2;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9585171	9585272	.	-	.	source_transcript=ENST00000450658.5;source_transcript_name=FAM197Y6-202;source_gene=ENSG00000237802.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000237802.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000450658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000450658.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y6;transcript_id=HG003_chrY_T0000895;gene_id=HG003_chrY_G0000287;Parent=HG003_chrY_T0000895;transcript_name=HG003_chrY_T0000895;gene_name=FAM197Y6;ID=exon:HG003_chrY_T0000895:3;Name=FAM197Y6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9584939	9586931	.	-	.	source_gene_common_name=ENSG00000286173;source_gene=ENSG00000286173.1;gene_id=HG003_chrY_G0000288;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000286173;gene_sources=liftoff;ID=HG003_chrY_G0000288;Name=ENSG00000286173
HG003_chrY	CAT	transcript	9584939	9586931	1000	-	.	source_transcript=ENST00000420524.4;source_transcript_name=ENST00000420524;source_gene=ENSG00000286173.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286173.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420524.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000420524.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286173;transcript_id=HG003_chrY_T0000896;gene_id=HG003_chrY_G0000288;Parent=HG003_chrY_G0000288;transcript_name=HG003_chrY_T0000896;gene_name=ENSG00000286173;ID=HG003_chrY_T0000896;Name=ENSG00000286173
HG003_chrY	CAT	exon	9584939	9585084	.	-	.	source_transcript=ENST00000420524.4;source_transcript_name=ENST00000420524;source_gene=ENSG00000286173.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286173.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420524.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000420524.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286173;transcript_id=HG003_chrY_T0000896;gene_id=HG003_chrY_G0000288;Parent=HG003_chrY_T0000896;transcript_name=HG003_chrY_T0000896;gene_name=ENSG00000286173;ID=exon:HG003_chrY_T0000896:0;Name=ENSG00000286173;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9585085	9586620	.	-	.	source_transcript=ENST00000420524.4;source_transcript_name=ENST00000420524;source_gene=ENSG00000286173.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286173.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420524.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000420524.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286173;transcript_id=HG003_chrY_T0000896;gene_id=HG003_chrY_G0000288;Parent=HG003_chrY_T0000896;transcript_name=HG003_chrY_T0000896;gene_name=ENSG00000286173;ID=intron:HG003_chrY_T0000896:0;Name=ENSG00000286173;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9586621	9586931	.	-	.	source_transcript=ENST00000420524.4;source_transcript_name=ENST00000420524;source_gene=ENSG00000286173.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000286173.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420524.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000420524.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286173;transcript_id=HG003_chrY_T0000896;gene_id=HG003_chrY_G0000288;Parent=HG003_chrY_T0000896;transcript_name=HG003_chrY_T0000896;gene_name=ENSG00000286173;ID=exon:HG003_chrY_T0000896:1;Name=ENSG00000286173;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9587886	9590682	.	+	.	source_gene_common_name=TSPY1;source_gene=ENSG00000258992.7;gene_id=HG003_chrY_G0000289;gene_biotype=protein_coding;gene_name=TSPY1;gene_sources=liftoff;ID=HG003_chrY_G0000289;Name=TSPY1
HG003_chrY	CAT	transcript	9587886	9590681	100	+	.	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_G0000289;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=HG003_chrY_T0000897;Name=TSPY1
HG003_chrY	CAT	exon	9587886	9588417	.	+	.	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=exon:HG003_chrY_T0000897:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9587932	9588417	.	+	0	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000897:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9587932	9587934	.	+	0	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000897;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9588418	9589024	.	+	.	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=intron:HG003_chrY_T0000897:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589025	9589102	.	+	.	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=exon:HG003_chrY_T0000897:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589025	9589102	.	+	0	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000897:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589103	9589230	.	+	.	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=intron:HG003_chrY_T0000897:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589231	9589342	.	+	.	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=exon:HG003_chrY_T0000897:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589231	9589342	.	+	0	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000897:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589343	9589443	.	+	.	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=intron:HG003_chrY_T0000897:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589444	9589589	.	+	.	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=exon:HG003_chrY_T0000897:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589444	9589589	.	+	2	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000897:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589590	9589684	.	+	.	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=intron:HG003_chrY_T0000897:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589685	9589777	.	+	.	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=exon:HG003_chrY_T0000897:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589685	9589747	.	+	0	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000897:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9589745	9589747	.	+	0	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000897;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589778	9590471	.	+	.	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=intron:HG003_chrY_T0000897:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9590472	9590681	.	+	.	source_transcript=ENST00000423647.6;source_transcript_name=TSPY1-201;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000423647.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000423647.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000897;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000897;transcript_name=HG003_chrY_T0000897;gene_name=TSPY1;ID=exon:HG003_chrY_T0000897:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9587886	9590682	100	+	.	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_G0000289;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=HG003_chrY_T0000898;Name=TSPY1
HG003_chrY	CAT	exon	9587886	9588417	.	+	.	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=exon:HG003_chrY_T0000898:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9587932	9588417	.	+	0	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000898:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9587932	9587934	.	+	0	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=start_codon:HG003_chrY_T0000898;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9588418	9589024	.	+	.	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=intron:HG003_chrY_T0000898:0;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589025	9589102	.	+	.	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=exon:HG003_chrY_T0000898:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589025	9589102	.	+	0	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000898:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589103	9589230	.	+	.	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=intron:HG003_chrY_T0000898:1;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589231	9589342	.	+	.	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=exon:HG003_chrY_T0000898:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589231	9589342	.	+	0	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000898:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589343	9589443	.	+	.	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=intron:HG003_chrY_T0000898:2;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589444	9589589	.	+	.	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=exon:HG003_chrY_T0000898:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589444	9589589	.	+	2	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000898:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589590	9589695	.	+	.	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=intron:HG003_chrY_T0000898:3;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9589696	9589777	.	+	.	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=exon:HG003_chrY_T0000898:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9589696	9589777	.	+	0	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000898:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9589778	9590471	.	+	.	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=intron:HG003_chrY_T0000898:4;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9590472	9590682	.	+	.	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=exon:HG003_chrY_T0000898:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9590472	9590494	.	+	2	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=CDS:HG003_chrY_T0000898:5;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9590492	9590494	.	+	0	source_transcript=ENST00000451548.6;source_transcript_name=TSPY1-202;source_gene=ENSG00000258992.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000258992.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000451548.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000451548.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY1;transcript_id=HG003_chrY_T0000898;gene_id=HG003_chrY_G0000289;Parent=HG003_chrY_T0000898;transcript_name=HG003_chrY_T0000898;gene_name=TSPY1;ID=stop_codon:HG003_chrY_T0000898;Name=TSPY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9599971	9605572	.	-	.	source_gene_common_name=FAM197Y4;source_gene=ENSG00000290373.1;gene_id=HG003_chrY_G0000290;gene_biotype=lncRNA;gene_name=FAM197Y4;gene_sources=liftoff;ID=HG003_chrY_G0000290;Name=FAM197Y4
HG003_chrY	CAT	transcript	9599971	9605572	1000	-	.	source_transcript=ENST00000616275.4;source_transcript_name=FAM197Y4-202;source_gene=ENSG00000290373.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290373.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000616275.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000616275.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;transcript_id=HG003_chrY_T0000899;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_G0000290;transcript_name=HG003_chrY_T0000899;gene_name=FAM197Y4;ID=HG003_chrY_T0000899;Name=FAM197Y4
HG003_chrY	CAT	exon	9599971	9600030	.	-	.	source_transcript=ENST00000616275.4;source_transcript_name=FAM197Y4-202;source_gene=ENSG00000290373.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290373.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000616275.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000616275.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;transcript_id=HG003_chrY_T0000899;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000899;transcript_name=HG003_chrY_T0000899;gene_name=FAM197Y4;ID=exon:HG003_chrY_T0000899:0;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9600031	9603579	.	-	.	source_transcript=ENST00000616275.4;source_transcript_name=FAM197Y4-202;source_gene=ENSG00000290373.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290373.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000616275.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000616275.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;transcript_id=HG003_chrY_T0000899;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000899;transcript_name=HG003_chrY_T0000899;gene_name=FAM197Y4;ID=intron:HG003_chrY_T0000899:0;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9603580	9603738	.	-	.	source_transcript=ENST00000616275.4;source_transcript_name=FAM197Y4-202;source_gene=ENSG00000290373.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290373.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000616275.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000616275.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;transcript_id=HG003_chrY_T0000899;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000899;transcript_name=HG003_chrY_T0000899;gene_name=FAM197Y4;ID=exon:HG003_chrY_T0000899:1;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9603739	9605238	.	-	.	source_transcript=ENST00000616275.4;source_transcript_name=FAM197Y4-202;source_gene=ENSG00000290373.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290373.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000616275.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000616275.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;transcript_id=HG003_chrY_T0000899;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000899;transcript_name=HG003_chrY_T0000899;gene_name=FAM197Y4;ID=intron:HG003_chrY_T0000899:1;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9605239	9605384	.	-	.	source_transcript=ENST00000616275.4;source_transcript_name=FAM197Y4-202;source_gene=ENSG00000290373.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290373.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000616275.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000616275.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;transcript_id=HG003_chrY_T0000899;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000899;transcript_name=HG003_chrY_T0000899;gene_name=FAM197Y4;ID=exon:HG003_chrY_T0000899:2;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9605385	9605470	.	-	.	source_transcript=ENST00000616275.4;source_transcript_name=FAM197Y4-202;source_gene=ENSG00000290373.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290373.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000616275.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000616275.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;transcript_id=HG003_chrY_T0000899;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000899;transcript_name=HG003_chrY_T0000899;gene_name=FAM197Y4;ID=intron:HG003_chrY_T0000899:2;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9605471	9605572	.	-	.	source_transcript=ENST00000616275.4;source_transcript_name=FAM197Y4-202;source_gene=ENSG00000290373.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290373.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000616275.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000616275.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;transcript_id=HG003_chrY_T0000899;gene_id=HG003_chrY_G0000290;Parent=HG003_chrY_T0000899;transcript_name=HG003_chrY_T0000899;gene_name=FAM197Y4;ID=exon:HG003_chrY_T0000899:3;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9605239	9607231	.	-	.	source_gene_common_name=FAM197Y4;source_gene=ENSG00000274196.6;gene_id=HG003_chrY_G0000291;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y4;gene_sources=liftoff;ID=HG003_chrY_G0000291;Name=FAM197Y4
HG003_chrY	CAT	transcript	9605239	9607231	1000	-	.	source_transcript=ENST00000622692.2;source_transcript_name=FAM197Y4-201;source_gene=ENSG00000274196.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000274196.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000622692.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000622692.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;transcript_id=HG003_chrY_T0000900;gene_id=HG003_chrY_G0000291;Parent=HG003_chrY_G0000291;transcript_name=HG003_chrY_T0000900;gene_name=FAM197Y4;ID=HG003_chrY_T0000900;Name=FAM197Y4
HG003_chrY	CAT	exon	9605239	9605384	.	-	.	source_transcript=ENST00000622692.2;source_transcript_name=FAM197Y4-201;source_gene=ENSG00000274196.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000274196.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000622692.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000622692.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;transcript_id=HG003_chrY_T0000900;gene_id=HG003_chrY_G0000291;Parent=HG003_chrY_T0000900;transcript_name=HG003_chrY_T0000900;gene_name=FAM197Y4;ID=exon:HG003_chrY_T0000900:0;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9605385	9606920	.	-	.	source_transcript=ENST00000622692.2;source_transcript_name=FAM197Y4-201;source_gene=ENSG00000274196.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000274196.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000622692.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000622692.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;transcript_id=HG003_chrY_T0000900;gene_id=HG003_chrY_G0000291;Parent=HG003_chrY_T0000900;transcript_name=HG003_chrY_T0000900;gene_name=FAM197Y4;ID=intron:HG003_chrY_T0000900:0;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9606921	9607231	.	-	.	source_transcript=ENST00000622692.2;source_transcript_name=FAM197Y4-201;source_gene=ENSG00000274196.6;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000274196.6;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000622692.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000622692.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y4;transcript_id=HG003_chrY_T0000900;gene_id=HG003_chrY_G0000291;Parent=HG003_chrY_T0000900;transcript_name=HG003_chrY_T0000900;gene_name=FAM197Y4;ID=exon:HG003_chrY_T0000900:1;Name=FAM197Y4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9608185	9610999	.	+	.	source_gene_common_name=TSPY4;source_gene=ENSG00000233803.9;gene_id=HG003_chrY_G0000292;gene_biotype=protein_coding;gene_name=TSPY4;gene_sources=liftoff;ID=HG003_chrY_G0000292;Name=TSPY4
HG003_chrY	CAT	transcript	9608185	9610999	100	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_G0000292;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=HG003_chrY_T0000901;Name=TSPY4
HG003_chrY	CAT	exon	9608185	9608734	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=exon:HG003_chrY_T0000901:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9608231	9608734	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000901:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9608231	9608233	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000901;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9608735	9609341	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=intron:HG003_chrY_T0000901:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609342	9609419	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=exon:HG003_chrY_T0000901:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609342	9609419	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000901:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609420	9609547	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=intron:HG003_chrY_T0000901:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609548	9609659	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=exon:HG003_chrY_T0000901:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609548	9609659	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000901:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609660	9609760	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=intron:HG003_chrY_T0000901:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609761	9609906	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=exon:HG003_chrY_T0000901:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609761	9609906	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000901:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609907	9610012	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=intron:HG003_chrY_T0000901:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610013	9610094	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=exon:HG003_chrY_T0000901:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9610013	9610094	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000901:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9610095	9610788	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=intron:HG003_chrY_T0000901:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610789	9610999	.	+	.	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=exon:HG003_chrY_T0000901:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9610789	9610811	.	+	2	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000901:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9610809	9610811	.	+	0	source_transcript=ENST00000426950.6;source_transcript_name=TSPY4-202;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426950.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426950.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000901;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000901;transcript_name=HG003_chrY_T0000901;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000901;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9608185	9610878	100	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_G0000292;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=HG003_chrY_T0000902;Name=TSPY4
HG003_chrY	CAT	exon	9608185	9608317	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=exon:HG003_chrY_T0000902:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9608231	9608317	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000902:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9608231	9608233	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000902;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9608318	9608596	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=intron:HG003_chrY_T0000902:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9608597	9608734	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=exon:HG003_chrY_T0000902:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9608597	9608734	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000902:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9608735	9609341	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=intron:HG003_chrY_T0000902:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609342	9609419	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=exon:HG003_chrY_T0000902:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609342	9609419	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000902:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609420	9609547	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=intron:HG003_chrY_T0000902:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609548	9609659	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=exon:HG003_chrY_T0000902:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609548	9609659	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000902:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609660	9609760	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=intron:HG003_chrY_T0000902:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609761	9609906	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=exon:HG003_chrY_T0000902:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609761	9609906	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000902:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609907	9610012	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=intron:HG003_chrY_T0000902:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610013	9610094	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=exon:HG003_chrY_T0000902:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9610013	9610094	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000902:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9610095	9610788	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=intron:HG003_chrY_T0000902:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610789	9610878	.	+	.	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=exon:HG003_chrY_T0000902:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9610789	9610811	.	+	2	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000902:6;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9610809	9610811	.	+	0	source_transcript=ENST00000640033.2;source_transcript_name=TSPY4-205;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000640033.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000640033.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000902;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000902;transcript_name=HG003_chrY_T0000902;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000902;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9608231	9610998	100	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_G0000292;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=HG003_chrY_T0000903;Name=TSPY4
HG003_chrY	CAT	exon	9608231	9608734	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=exon:HG003_chrY_T0000903:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9608231	9608734	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000903:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9608231	9608233	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=start_codon:HG003_chrY_T0000903;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9608735	9609341	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=intron:HG003_chrY_T0000903:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609342	9609419	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=exon:HG003_chrY_T0000903:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609342	9609419	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000903:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609420	9609547	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=intron:HG003_chrY_T0000903:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609548	9609659	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=exon:HG003_chrY_T0000903:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609548	9609659	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000903:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609660	9609760	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=intron:HG003_chrY_T0000903:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609761	9609906	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=exon:HG003_chrY_T0000903:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9609761	9609906	.	+	2	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000903:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609907	9610001	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=intron:HG003_chrY_T0000903:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610002	9610094	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=exon:HG003_chrY_T0000903:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9610002	9610064	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=CDS:HG003_chrY_T0000903:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9610062	9610064	.	+	0	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=stop_codon:HG003_chrY_T0000903;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9610095	9610788	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=intron:HG003_chrY_T0000903:4;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610789	9610998	.	+	.	source_transcript=ENST00000383008.1;source_transcript_name=TSPY4-201;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383008.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000903;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000903;transcript_name=HG003_chrY_T0000903;gene_name=TSPY4;ID=exon:HG003_chrY_T0000903:5;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9608231	9611005	1000	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000904;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_G0000292;transcript_name=HG003_chrY_T0000904;gene_name=TSPY4;ID=HG003_chrY_T0000904;Name=TSPY4
HG003_chrY	CAT	exon	9608231	9608734	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000904;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000904;transcript_name=HG003_chrY_T0000904;gene_name=TSPY4;ID=exon:HG003_chrY_T0000904:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9608735	9609341	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000904;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000904;transcript_name=HG003_chrY_T0000904;gene_name=TSPY4;ID=intron:HG003_chrY_T0000904:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609342	9609419	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000904;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000904;transcript_name=HG003_chrY_T0000904;gene_name=TSPY4;ID=exon:HG003_chrY_T0000904:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609420	9609547	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000904;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000904;transcript_name=HG003_chrY_T0000904;gene_name=TSPY4;ID=intron:HG003_chrY_T0000904:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9609548	9610094	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000904;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000904;transcript_name=HG003_chrY_T0000904;gene_name=TSPY4;ID=exon:HG003_chrY_T0000904:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9610095	9610221	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000904;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000904;transcript_name=HG003_chrY_T0000904;gene_name=TSPY4;ID=intron:HG003_chrY_T0000904:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610222	9611005	.	+	.	source_transcript=ENST00000466036.1;source_transcript_name=TSPY4-203;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000904;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000904;transcript_name=HG003_chrY_T0000904;gene_name=TSPY4;ID=exon:HG003_chrY_T0000904:3;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9609609	9610990	1000	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000905;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_G0000292;transcript_name=HG003_chrY_T0000905;gene_name=TSPY4;ID=HG003_chrY_T0000905;Name=TSPY4
HG003_chrY	CAT	exon	9609609	9609906	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000905;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000905;transcript_name=HG003_chrY_T0000905;gene_name=TSPY4;ID=exon:HG003_chrY_T0000905:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9609907	9610001	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000905;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000905;transcript_name=HG003_chrY_T0000905;gene_name=TSPY4;ID=intron:HG003_chrY_T0000905:0;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610002	9610094	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000905;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000905;transcript_name=HG003_chrY_T0000905;gene_name=TSPY4;ID=exon:HG003_chrY_T0000905:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9610095	9610788	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000905;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000905;transcript_name=HG003_chrY_T0000905;gene_name=TSPY4;ID=intron:HG003_chrY_T0000905:1;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9610789	9610990	.	+	.	source_transcript=ENST00000482082.1;source_transcript_name=TSPY4-204;source_gene=ENSG00000233803.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000233803.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000482082.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000482082.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY4;transcript_id=HG003_chrY_T0000905;gene_id=HG003_chrY_G0000292;Parent=HG003_chrY_T0000905;transcript_name=HG003_chrY_T0000905;gene_name=TSPY4;ID=exon:HG003_chrY_T0000905:2;Name=TSPY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9620152	9625898	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000293;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000293;Name=FAM197Y5
HG003_chrY	CAT	transcript	9620152	9625898	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000906;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_G0000293;transcript_name=HG003_chrY_T0000906;gene_name=FAM197Y5;ID=HG003_chrY_T0000906;Name=FAM197Y5
HG003_chrY	CAT	exon	9620152	9620341	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000906;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000906;transcript_name=HG003_chrY_T0000906;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000906:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9620342	9623895	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000906;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000906;transcript_name=HG003_chrY_T0000906;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000906:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9623896	9623981	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000906;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000906;transcript_name=HG003_chrY_T0000906;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000906:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9623982	9625784	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000906;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000906;transcript_name=HG003_chrY_T0000906;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000906:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9625785	9625898	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000906;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000906;transcript_name=HG003_chrY_T0000906;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000906:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9620282	9625886	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000907;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_G0000293;transcript_name=HG003_chrY_T0000907;gene_name=FAM197Y5;ID=HG003_chrY_T0000907;Name=FAM197Y5
HG003_chrY	CAT	exon	9620282	9620341	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000907;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000907;transcript_name=HG003_chrY_T0000907;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000907:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9620342	9623895	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000907;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000907;transcript_name=HG003_chrY_T0000907;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000907:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9623896	9624054	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000907;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000907;transcript_name=HG003_chrY_T0000907;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000907:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9624055	9625552	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000907;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000907;transcript_name=HG003_chrY_T0000907;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000907:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9625553	9625698	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000907;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000907;transcript_name=HG003_chrY_T0000907;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000907:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9625699	9625784	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000907;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000907;transcript_name=HG003_chrY_T0000907;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000907:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9625785	9625886	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000907;gene_id=HG003_chrY_G0000293;Parent=HG003_chrY_T0000907;transcript_name=HG003_chrY_T0000907;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000907:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9625553	9627545	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_14;gene_id=HG003_chrY_G0000294;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000294;Name=FAM197Y5
HG003_chrY	CAT	transcript	9625553	9627545	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_14;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_14;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000908;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_G0000294;transcript_name=HG003_chrY_T0000908;gene_name=FAM197Y5;ID=HG003_chrY_T0000908;Name=FAM197Y5
HG003_chrY	CAT	exon	9625553	9625698	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_14;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_14;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000908;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000908;transcript_name=HG003_chrY_T0000908;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000908:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9625699	9627234	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_14;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_14;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000908;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000908;transcript_name=HG003_chrY_T0000908;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000908:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9627235	9627545	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_14;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_14;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000908;gene_id=HG003_chrY_G0000294;Parent=HG003_chrY_T0000908;transcript_name=HG003_chrY_T0000908;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000908:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9628499	9631313	.	+	.	source_gene_common_name=TSPY9;source_gene=ENSG00000238074.6;gene_id=HG003_chrY_G0000295;gene_biotype=protein_coding;gene_name=TSPY9;gene_sources=liftoff;ID=HG003_chrY_G0000295;Name=TSPY9
HG003_chrY	CAT	transcript	9628499	9631313	100	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_G0000295;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=HG003_chrY_T0000909;Name=TSPY9
HG003_chrY	CAT	exon	9628499	9629048	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=exon:HG003_chrY_T0000909:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9628545	9629048	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000909:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9629049	9629655	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=intron:HG003_chrY_T0000909:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9629656	9629733	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=exon:HG003_chrY_T0000909:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9629656	9629733	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000909:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9629734	9629861	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=intron:HG003_chrY_T0000909:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9629862	9629973	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=exon:HG003_chrY_T0000909:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9629862	9629973	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000909:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9629974	9630074	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=intron:HG003_chrY_T0000909:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9630075	9630220	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=exon:HG003_chrY_T0000909:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9630075	9630220	.	+	2	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000909:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9630221	9630326	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=intron:HG003_chrY_T0000909:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9630327	9630408	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=exon:HG003_chrY_T0000909:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9630327	9630408	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000909:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9630409	9631102	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=intron:HG003_chrY_T0000909:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9631103	9631313	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=exon:HG003_chrY_T0000909:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9631103	9631125	.	+	2	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000909:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9631123	9631125	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000909;gene_id=HG003_chrY_G0000295;Parent=HG003_chrY_T0000909;transcript_name=HG003_chrY_T0000909;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000909;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9638516	9646407	.	-	.	source_gene_common_name=ENSG00000290332;source_gene=ENSG00000290332.1_2;gene_id=HG003_chrY_G0000296;gene_biotype=lncRNA;gene_name=ENSG00000290332;gene_sources=liftoff;ID=HG003_chrY_G0000296;Name=ENSG00000290332
HG003_chrY	CAT	transcript	9638516	9646407	1000	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000910;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_G0000296;transcript_name=HG003_chrY_T0000910;gene_name=ENSG00000290332;ID=HG003_chrY_T0000910;Name=ENSG00000290332
HG003_chrY	CAT	exon	9638516	9640642	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000910;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000910;transcript_name=HG003_chrY_T0000910;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000910:0;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9640643	9644193	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000910;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000910;transcript_name=HG003_chrY_T0000910;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000910:0;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9644194	9644279	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000910;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000910;transcript_name=HG003_chrY_T0000910;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000910:1;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9644280	9646086	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000910;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000910;transcript_name=HG003_chrY_T0000910;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000910:1;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9646087	9646196	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000910;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000910;transcript_name=HG003_chrY_T0000910;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000910:2;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9646197	9646392	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000910;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000910;transcript_name=HG003_chrY_T0000910;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000910:2;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9646393	9646407	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000910;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000910;transcript_name=HG003_chrY_T0000910;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000910:3;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9640583	9646188	1000	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000911;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_G0000296;transcript_name=HG003_chrY_T0000911;gene_name=ENSG00000290332;ID=HG003_chrY_T0000911;Name=ENSG00000290332
HG003_chrY	CAT	exon	9640583	9640642	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000911;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000911;transcript_name=HG003_chrY_T0000911;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000911:0;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9640643	9644193	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000911;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000911;transcript_name=HG003_chrY_T0000911;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000911:0;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9644194	9644352	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000911;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000911;transcript_name=HG003_chrY_T0000911;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000911:1;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9644353	9645854	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000911;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000911;transcript_name=HG003_chrY_T0000911;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000911:1;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9645855	9646000	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000911;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000911;transcript_name=HG003_chrY_T0000911;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000911:2;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9646001	9646086	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000911;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000911;transcript_name=HG003_chrY_T0000911;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000911:2;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9646087	9646188	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000911;gene_id=HG003_chrY_G0000296;Parent=HG003_chrY_T0000911;transcript_name=HG003_chrY_T0000911;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000911:3;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9645855	9647847	.	-	.	source_gene_common_name=FAM197Y2;source_gene=ENSG00000234803.9_1;gene_id=HG003_chrY_G0000297;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000297;Name=FAM197Y2
HG003_chrY	CAT	transcript	9645855	9647847	1000	-	.	source_transcript=ENST00000598351.3;source_transcript_name=FAM197Y2-201;source_gene=ENSG00000234803.9_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234803.9_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000598351.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000598351.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=HG003_chrY_T0000912;gene_id=HG003_chrY_G0000297;Parent=HG003_chrY_G0000297;transcript_name=HG003_chrY_T0000912;gene_name=FAM197Y2;ID=HG003_chrY_T0000912;Name=FAM197Y2
HG003_chrY	CAT	exon	9645855	9646000	.	-	.	source_transcript=ENST00000598351.3;source_transcript_name=FAM197Y2-201;source_gene=ENSG00000234803.9_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234803.9_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000598351.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000598351.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=HG003_chrY_T0000912;gene_id=HG003_chrY_G0000297;Parent=HG003_chrY_T0000912;transcript_name=HG003_chrY_T0000912;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000912:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9646001	9647536	.	-	.	source_transcript=ENST00000598351.3;source_transcript_name=FAM197Y2-201;source_gene=ENSG00000234803.9_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234803.9_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000598351.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000598351.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=HG003_chrY_T0000912;gene_id=HG003_chrY_G0000297;Parent=HG003_chrY_T0000912;transcript_name=HG003_chrY_T0000912;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000912:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9647537	9647847	.	-	.	source_transcript=ENST00000598351.3;source_transcript_name=FAM197Y2-201;source_gene=ENSG00000234803.9_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234803.9_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000598351.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000598351.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=HG003_chrY_T0000912;gene_id=HG003_chrY_G0000297;Parent=HG003_chrY_T0000912;transcript_name=HG003_chrY_T0000912;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000912:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9648837	9651605	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1;gene_id=HG003_chrY_G0000298;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000298;Name=ENSG00000293749
HG003_chrY	CAT	transcript	9648837	9651605	1000	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_G0000298;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=HG003_chrY_T0000913;Name=ENSG00000293749
HG003_chrY	CAT	exon	9648837	9648929	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000913:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9648930	9649190	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000913:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649191	9649328	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000913:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9649329	9649935	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000913:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649936	9650013	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000913:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650014	9650141	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000913:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650142	9650253	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000913:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650254	9650354	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000913:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650355	9650500	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000913:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650501	9650606	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000913:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650607	9650688	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000913:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000913:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651605	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000913;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000913;transcript_name=HG003_chrY_T0000913;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000913:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9648849	9651593	1000	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_G0000298;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=HG003_chrY_T0000915;Name=ENSG00000293749
HG003_chrY	CAT	exon	9648849	9648929	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000915:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9648930	9649190	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000915:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649191	9649328	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000915:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9649329	9649935	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000915:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649936	9650013	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000915:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650014	9650141	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000915:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650142	9650253	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000915:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650254	9650361	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000915:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650362	9650500	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000915:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650501	9650606	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000915:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650607	9650688	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000915:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000915:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651593	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000915;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000915;transcript_name=HG003_chrY_T0000915;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000915:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9648858	9651600	1000	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_G0000298;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=HG003_chrY_T0000916;Name=ENSG00000293749
HG003_chrY	CAT	exon	9648858	9648929	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000916:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9648930	9649190	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000916:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649191	9649328	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000916:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9649329	9649935	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000916:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649936	9650013	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000916:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650014	9650141	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000916:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650142	9650253	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000916:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650254	9650354	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000916:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650355	9650500	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000916:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650501	9650595	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000916:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650596	9650688	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000916:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000916:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651600	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000916;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000916;transcript_name=HG003_chrY_T0000916;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000916:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9649060	9651598	1000	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000917;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_G0000298;transcript_name=HG003_chrY_T0000917;gene_name=ENSG00000293749;ID=HG003_chrY_T0000917;Name=ENSG00000293749
HG003_chrY	CAT	exon	9649060	9649328	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000917;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000917;transcript_name=HG003_chrY_T0000917;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000917:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9649329	9649935	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000917;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000917;transcript_name=HG003_chrY_T0000917;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000917:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649936	9650013	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000917;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000917;transcript_name=HG003_chrY_T0000917;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000917:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650014	9650141	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000917;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000917;transcript_name=HG003_chrY_T0000917;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000917:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650142	9650253	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000917;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000917;transcript_name=HG003_chrY_T0000917;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000917:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650254	9650354	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000917;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000917;transcript_name=HG003_chrY_T0000917;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000917:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650355	9650500	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000917;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000917;transcript_name=HG003_chrY_T0000917;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000917:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650501	9650606	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000917;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000917;transcript_name=HG003_chrY_T0000917;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000917:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650607	9650688	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000917;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000917;transcript_name=HG003_chrY_T0000917;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000917:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000917;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000917;transcript_name=HG003_chrY_T0000917;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000917:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651598	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000917;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000917;transcript_name=HG003_chrY_T0000917;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000917:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9649156	9651593	1000	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000918;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_G0000298;transcript_name=HG003_chrY_T0000918;gene_name=ENSG00000293749;ID=HG003_chrY_T0000918;Name=ENSG00000293749
HG003_chrY	CAT	exon	9649156	9649328	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000918;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000918;transcript_name=HG003_chrY_T0000918;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000918:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9649329	9649935	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000918;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000918;transcript_name=HG003_chrY_T0000918;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000918:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649936	9650013	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000918;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000918;transcript_name=HG003_chrY_T0000918;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000918:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650014	9650141	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000918;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000918;transcript_name=HG003_chrY_T0000918;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000918:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650142	9650253	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000918;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000918;transcript_name=HG003_chrY_T0000918;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000918:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650254	9650361	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000918;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000918;transcript_name=HG003_chrY_T0000918;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000918:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650362	9650500	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000918;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000918;transcript_name=HG003_chrY_T0000918;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000918:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650501	9650606	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000918;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000918;transcript_name=HG003_chrY_T0000918;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000918:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650607	9650688	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000918;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000918;transcript_name=HG003_chrY_T0000918;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000918:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000918;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000918;transcript_name=HG003_chrY_T0000918;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000918:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651593	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000918;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000918;transcript_name=HG003_chrY_T0000918;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000918:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9649282	9651604	1000	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000919;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_G0000298;transcript_name=HG003_chrY_T0000919;gene_name=ENSG00000293749;ID=HG003_chrY_T0000919;Name=ENSG00000293749
HG003_chrY	CAT	exon	9649282	9649384	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000919;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000919;transcript_name=HG003_chrY_T0000919;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000919:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9649385	9649953	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000919;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000919;transcript_name=HG003_chrY_T0000919;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000919:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649954	9650013	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000919;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000919;transcript_name=HG003_chrY_T0000919;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000919:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650014	9650141	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000919;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000919;transcript_name=HG003_chrY_T0000919;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000919:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650142	9650253	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000919;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000919;transcript_name=HG003_chrY_T0000919;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000919:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650254	9650354	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000919;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000919;transcript_name=HG003_chrY_T0000919;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000919:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650355	9650500	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000919;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000919;transcript_name=HG003_chrY_T0000919;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000919:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650501	9650606	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000919;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000919;transcript_name=HG003_chrY_T0000919;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000919:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650607	9650688	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000919;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000919;transcript_name=HG003_chrY_T0000919;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000919:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000919;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000919;transcript_name=HG003_chrY_T0000919;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000919:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651604	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000919;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000919;transcript_name=HG003_chrY_T0000919;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000919:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9649983	9651591	1000	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000920;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_G0000298;transcript_name=HG003_chrY_T0000920;gene_name=ENSG00000293749;ID=HG003_chrY_T0000920;Name=ENSG00000293749
HG003_chrY	CAT	exon	9649983	9650013	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000920;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000920;transcript_name=HG003_chrY_T0000920;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000920:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650014	9650141	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000920;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000920;transcript_name=HG003_chrY_T0000920;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000920:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650142	9650500	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000920;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000920;transcript_name=HG003_chrY_T0000920;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000920:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650501	9650606	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000920;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000920;transcript_name=HG003_chrY_T0000920;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000920:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650607	9650688	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000920;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000920;transcript_name=HG003_chrY_T0000920;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000920:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000920;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000920;transcript_name=HG003_chrY_T0000920;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000920:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651591	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000920;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000920;transcript_name=HG003_chrY_T0000920;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000920:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9650528	9651600	1000	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000921;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_G0000298;transcript_name=HG003_chrY_T0000921;gene_name=ENSG00000293749;ID=HG003_chrY_T0000921;Name=ENSG00000293749
HG003_chrY	CAT	exon	9650528	9650688	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000921;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000921;transcript_name=HG003_chrY_T0000921;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000921:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000921;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000921;transcript_name=HG003_chrY_T0000921;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000921:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651600	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000921;gene_id=HG003_chrY_G0000298;Parent=HG003_chrY_T0000921;transcript_name=HG003_chrY_T0000921;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000921:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9648843	9651405	.	+	.	source_gene_common_name=TSPY6P;source_gene=ENSG00000270073.1_3;gene_id=HG003_chrY_G0000299;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY6P;gene_sources=liftoff;ID=HG003_chrY_G0000299;Name=TSPY6P
HG003_chrY	CAT	transcript	9648843	9651405	1000	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_G0000299;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=HG003_chrY_T0000914;Name=TSPY6P
HG003_chrY	CAT	exon	9648843	9649053	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000914:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9649054	9649061	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000914:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649062	9649328	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000914:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9649329	9649935	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000914:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9649936	9650013	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000914:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650014	9650141	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000914:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650142	9650253	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000914:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650254	9650354	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000914:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650355	9650500	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000914:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650501	9650606	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000914:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9650607	9650688	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000914:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9650689	9651382	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000914:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9651383	9651405	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000914;gene_id=HG003_chrY_G0000299;Parent=HG003_chrY_T0000914;transcript_name=HG003_chrY_T0000914;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000914:6;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9660737	9666483	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000300;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000300;Name=FAM197Y5
HG003_chrY	CAT	transcript	9660737	9666483	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000922;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_G0000300;transcript_name=HG003_chrY_T0000922;gene_name=FAM197Y5;ID=HG003_chrY_T0000922;Name=FAM197Y5
HG003_chrY	CAT	exon	9660737	9660926	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000922;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_T0000922;transcript_name=HG003_chrY_T0000922;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000922:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9660927	9664476	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000922;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_T0000922;transcript_name=HG003_chrY_T0000922;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000922:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9664477	9664562	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000922;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_T0000922;transcript_name=HG003_chrY_T0000922;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000922:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9664563	9666369	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000922;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_T0000922;transcript_name=HG003_chrY_T0000922;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000922:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9666370	9666483	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000922;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_T0000922;transcript_name=HG003_chrY_T0000922;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000922:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9660867	9666471	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000923;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_G0000300;transcript_name=HG003_chrY_T0000923;gene_name=FAM197Y5;ID=HG003_chrY_T0000923;Name=FAM197Y5
HG003_chrY	CAT	exon	9660867	9660926	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000923;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_T0000923;transcript_name=HG003_chrY_T0000923;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000923:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9660927	9664476	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000923;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_T0000923;transcript_name=HG003_chrY_T0000923;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000923:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9664477	9664635	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000923;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_T0000923;transcript_name=HG003_chrY_T0000923;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000923:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9664636	9666137	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000923;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_T0000923;transcript_name=HG003_chrY_T0000923;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000923:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9666138	9666283	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000923;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_T0000923;transcript_name=HG003_chrY_T0000923;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000923:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9666284	9666369	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000923;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_T0000923;transcript_name=HG003_chrY_T0000923;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000923:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9666370	9666471	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000923;gene_id=HG003_chrY_G0000300;Parent=HG003_chrY_T0000923;transcript_name=HG003_chrY_T0000923;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000923:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9666138	9668130	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_18;gene_id=HG003_chrY_G0000301;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000301;Name=FAM197Y5
HG003_chrY	CAT	transcript	9666138	9668130	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_18;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_18;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000924;gene_id=HG003_chrY_G0000301;Parent=HG003_chrY_G0000301;transcript_name=HG003_chrY_T0000924;gene_name=FAM197Y5;ID=HG003_chrY_T0000924;Name=FAM197Y5
HG003_chrY	CAT	exon	9666138	9666283	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_18;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_18;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000924;gene_id=HG003_chrY_G0000301;Parent=HG003_chrY_T0000924;transcript_name=HG003_chrY_T0000924;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000924:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9666284	9667819	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_18;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_18;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000924;gene_id=HG003_chrY_G0000301;Parent=HG003_chrY_T0000924;transcript_name=HG003_chrY_T0000924;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000924:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9667820	9668130	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_18;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_18;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000924;gene_id=HG003_chrY_G0000301;Parent=HG003_chrY_T0000924;transcript_name=HG003_chrY_T0000924;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000924:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9669124	9671893	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1_3;gene_id=HG003_chrY_G0000302;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000302;Name=ENSG00000293749
HG003_chrY	CAT	transcript	9669124	9671893	1000	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_G0000302;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=HG003_chrY_T0000925;Name=ENSG00000293749
HG003_chrY	CAT	exon	9669124	9669216	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000925:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669217	9669477	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000925:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9669478	9669615	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000925:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669616	9670222	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000925:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670223	9670300	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000925:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670301	9670428	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000925:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670429	9670540	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000925:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670541	9670641	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000925:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670642	9670787	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000925:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670788	9670893	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000925:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670894	9670975	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000925:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000925:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671893	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000925;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000925;transcript_name=HG003_chrY_T0000925;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000925:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9669136	9671881	1000	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_G0000302;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=HG003_chrY_T0000927;Name=ENSG00000293749
HG003_chrY	CAT	exon	9669136	9669216	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000927:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669217	9669477	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000927:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9669478	9669615	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000927:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669616	9670222	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000927:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670223	9670300	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000927:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670301	9670428	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000927:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670429	9670540	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000927:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670541	9670648	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000927:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670649	9670787	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000927:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670788	9670893	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000927:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670894	9670975	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000927:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000927:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671881	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000927;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000927;transcript_name=HG003_chrY_T0000927;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000927:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9669145	9671888	1000	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_G0000302;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=HG003_chrY_T0000928;Name=ENSG00000293749
HG003_chrY	CAT	exon	9669145	9669216	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000928:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669217	9669477	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000928:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9669478	9669615	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000928:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669616	9670222	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000928:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670223	9670300	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000928:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670301	9670428	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000928:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670429	9670540	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000928:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670541	9670641	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000928:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670642	9670787	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000928:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670788	9670882	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000928:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670883	9670975	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000928:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000928:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671888	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000928;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000928;transcript_name=HG003_chrY_T0000928;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000928:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9669347	9671886	1000	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000929;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_G0000302;transcript_name=HG003_chrY_T0000929;gene_name=ENSG00000293749;ID=HG003_chrY_T0000929;Name=ENSG00000293749
HG003_chrY	CAT	exon	9669347	9669615	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000929;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000929;transcript_name=HG003_chrY_T0000929;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000929:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669616	9670222	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000929;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000929;transcript_name=HG003_chrY_T0000929;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000929:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670223	9670300	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000929;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000929;transcript_name=HG003_chrY_T0000929;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000929:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670301	9670428	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000929;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000929;transcript_name=HG003_chrY_T0000929;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000929:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670429	9670540	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000929;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000929;transcript_name=HG003_chrY_T0000929;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000929:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670541	9670641	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000929;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000929;transcript_name=HG003_chrY_T0000929;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000929:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670642	9670787	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000929;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000929;transcript_name=HG003_chrY_T0000929;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000929:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670788	9670893	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000929;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000929;transcript_name=HG003_chrY_T0000929;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000929:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670894	9670975	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000929;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000929;transcript_name=HG003_chrY_T0000929;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000929:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000929;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000929;transcript_name=HG003_chrY_T0000929;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000929:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671886	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000929;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000929;transcript_name=HG003_chrY_T0000929;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000929:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9669443	9671881	1000	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000930;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_G0000302;transcript_name=HG003_chrY_T0000930;gene_name=ENSG00000293749;ID=HG003_chrY_T0000930;Name=ENSG00000293749
HG003_chrY	CAT	exon	9669443	9669615	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000930;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000930;transcript_name=HG003_chrY_T0000930;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000930:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669616	9670222	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000930;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000930;transcript_name=HG003_chrY_T0000930;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000930:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670223	9670300	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000930;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000930;transcript_name=HG003_chrY_T0000930;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000930:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670301	9670428	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000930;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000930;transcript_name=HG003_chrY_T0000930;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000930:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670429	9670540	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000930;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000930;transcript_name=HG003_chrY_T0000930;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000930:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670541	9670648	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000930;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000930;transcript_name=HG003_chrY_T0000930;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000930:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670649	9670787	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000930;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000930;transcript_name=HG003_chrY_T0000930;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000930:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670788	9670893	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000930;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000930;transcript_name=HG003_chrY_T0000930;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000930:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670894	9670975	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000930;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000930;transcript_name=HG003_chrY_T0000930;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000930:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000930;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000930;transcript_name=HG003_chrY_T0000930;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000930:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671881	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000930;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000930;transcript_name=HG003_chrY_T0000930;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000930:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9669569	9671892	1000	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000931;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_G0000302;transcript_name=HG003_chrY_T0000931;gene_name=ENSG00000293749;ID=HG003_chrY_T0000931;Name=ENSG00000293749
HG003_chrY	CAT	exon	9669569	9669671	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000931;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000931;transcript_name=HG003_chrY_T0000931;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000931:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669672	9670240	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000931;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000931;transcript_name=HG003_chrY_T0000931;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000931:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670241	9670300	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000931;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000931;transcript_name=HG003_chrY_T0000931;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000931:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670301	9670428	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000931;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000931;transcript_name=HG003_chrY_T0000931;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000931:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670429	9670540	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000931;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000931;transcript_name=HG003_chrY_T0000931;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000931:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670541	9670641	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000931;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000931;transcript_name=HG003_chrY_T0000931;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000931:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670642	9670787	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000931;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000931;transcript_name=HG003_chrY_T0000931;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000931:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670788	9670893	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000931;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000931;transcript_name=HG003_chrY_T0000931;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000931:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670894	9670975	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000931;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000931;transcript_name=HG003_chrY_T0000931;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000931:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000931;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000931;transcript_name=HG003_chrY_T0000931;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000931:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671892	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000931;gene_id=HG003_chrY_G0000302;Parent=HG003_chrY_T0000931;transcript_name=HG003_chrY_T0000931;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000931:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9669130	9671692	.	+	.	source_gene_common_name=TSPY6P;source_gene=ENSG00000270073.1_1;gene_id=HG003_chrY_G0000303;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY6P;gene_sources=liftoff;ID=HG003_chrY_G0000303;Name=TSPY6P
HG003_chrY	CAT	transcript	9669130	9671692	1000	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_G0000303;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=HG003_chrY_T0000926;Name=TSPY6P
HG003_chrY	CAT	exon	9669130	9669340	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000926:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669341	9669348	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000926:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9669349	9669615	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000926:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9669616	9670222	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000926:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670223	9670300	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000926:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670301	9670428	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000926:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670429	9670540	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000926:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670541	9670641	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000926:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670642	9670787	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000926:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670788	9670893	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000926:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670894	9670975	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000926:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000926:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671692	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000926;gene_id=HG003_chrY_G0000303;Parent=HG003_chrY_T0000926;transcript_name=HG003_chrY_T0000926;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000926:6;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9670270	9671888	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1;gene_id=HG003_chrY_G0000304;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000304;Name=ENSG00000293749
HG003_chrY	CAT	transcript	9670270	9671879	1000	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000932;gene_id=HG003_chrY_G0000304;Parent=HG003_chrY_G0000304;transcript_name=HG003_chrY_T0000932;gene_name=ENSG00000293749;ID=HG003_chrY_T0000932;Name=ENSG00000293749
HG003_chrY	CAT	exon	9670270	9670300	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000932;gene_id=HG003_chrY_G0000304;Parent=HG003_chrY_T0000932;transcript_name=HG003_chrY_T0000932;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000932:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670301	9670428	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000932;gene_id=HG003_chrY_G0000304;Parent=HG003_chrY_T0000932;transcript_name=HG003_chrY_T0000932;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000932:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670429	9670787	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000932;gene_id=HG003_chrY_G0000304;Parent=HG003_chrY_T0000932;transcript_name=HG003_chrY_T0000932;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000932:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670788	9670893	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000932;gene_id=HG003_chrY_G0000304;Parent=HG003_chrY_T0000932;transcript_name=HG003_chrY_T0000932;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000932:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9670894	9670975	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000932;gene_id=HG003_chrY_G0000304;Parent=HG003_chrY_T0000932;transcript_name=HG003_chrY_T0000932;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000932:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000932;gene_id=HG003_chrY_G0000304;Parent=HG003_chrY_T0000932;transcript_name=HG003_chrY_T0000932;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000932:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671879	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000932;gene_id=HG003_chrY_G0000304;Parent=HG003_chrY_T0000932;transcript_name=HG003_chrY_T0000932;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000932:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9670815	9671888	1000	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000933;gene_id=HG003_chrY_G0000304;Parent=HG003_chrY_G0000304;transcript_name=HG003_chrY_T0000933;gene_name=ENSG00000293749;ID=HG003_chrY_T0000933;Name=ENSG00000293749
HG003_chrY	CAT	exon	9670815	9670975	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000933;gene_id=HG003_chrY_G0000304;Parent=HG003_chrY_T0000933;transcript_name=HG003_chrY_T0000933;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000933:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9670976	9671669	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000933;gene_id=HG003_chrY_G0000304;Parent=HG003_chrY_T0000933;transcript_name=HG003_chrY_T0000933;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000933:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9671670	9671888	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000933;gene_id=HG003_chrY_G0000304;Parent=HG003_chrY_T0000933;transcript_name=HG003_chrY_T0000933;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000933:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9681045	9686780	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000305;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000305;Name=FAM197Y5
HG003_chrY	CAT	transcript	9681045	9686780	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000934;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_G0000305;transcript_name=HG003_chrY_T0000934;gene_name=FAM197Y5;ID=HG003_chrY_T0000934;Name=FAM197Y5
HG003_chrY	CAT	exon	9681045	9681234	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000934;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_T0000934;transcript_name=HG003_chrY_T0000934;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000934:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9681235	9684781	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000934;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_T0000934;transcript_name=HG003_chrY_T0000934;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000934:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9684782	9684867	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000934;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_T0000934;transcript_name=HG003_chrY_T0000934;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000934:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9684868	9686666	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000934;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_T0000934;transcript_name=HG003_chrY_T0000934;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000934:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9686667	9686780	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000934;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_T0000934;transcript_name=HG003_chrY_T0000934;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000934:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9681175	9686768	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000935;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_G0000305;transcript_name=HG003_chrY_T0000935;gene_name=FAM197Y5;ID=HG003_chrY_T0000935;Name=FAM197Y5
HG003_chrY	CAT	exon	9681175	9681234	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000935;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_T0000935;transcript_name=HG003_chrY_T0000935;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000935:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9681235	9684781	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000935;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_T0000935;transcript_name=HG003_chrY_T0000935;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000935:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9684782	9684940	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000935;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_T0000935;transcript_name=HG003_chrY_T0000935;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000935:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9684941	9686434	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000935;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_T0000935;transcript_name=HG003_chrY_T0000935;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000935:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9686435	9686580	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000935;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_T0000935;transcript_name=HG003_chrY_T0000935;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000935:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9686581	9686666	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000935;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_T0000935;transcript_name=HG003_chrY_T0000935;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000935:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9686667	9686768	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000935;gene_id=HG003_chrY_G0000305;Parent=HG003_chrY_T0000935;transcript_name=HG003_chrY_T0000935;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000935:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9686435	9688427	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8_19;gene_id=HG003_chrY_G0000306;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000306;Name=FAM197Y5
HG003_chrY	CAT	transcript	9686435	9688427	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_19;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_19;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000936;gene_id=HG003_chrY_G0000306;Parent=HG003_chrY_G0000306;transcript_name=HG003_chrY_T0000936;gene_name=FAM197Y5;ID=HG003_chrY_T0000936;Name=FAM197Y5
HG003_chrY	CAT	exon	9686435	9686580	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_19;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_19;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000936;gene_id=HG003_chrY_G0000306;Parent=HG003_chrY_T0000936;transcript_name=HG003_chrY_T0000936;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000936:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9686581	9688116	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_19;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_19;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000936;gene_id=HG003_chrY_G0000306;Parent=HG003_chrY_T0000936;transcript_name=HG003_chrY_T0000936;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000936:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9688117	9688427	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8_19;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8_19;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000936;gene_id=HG003_chrY_G0000306;Parent=HG003_chrY_T0000936;transcript_name=HG003_chrY_T0000936;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000936:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9689385	9692190	.	+	.	source_gene_common_name=ENSG00000301844;source_gene=ENSG00000301844.1;gene_id=HG003_chrY_G0000307;gene_biotype=lncRNA;gene_name=ENSG00000301844;gene_sources=liftoff;ID=HG003_chrY_G0000307;Name=ENSG00000301844
HG003_chrY	CAT	transcript	9689385	9692190	1000	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000937;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_G0000307;transcript_name=HG003_chrY_T0000937;gene_name=ENSG00000301844;ID=HG003_chrY_T0000937;Name=ENSG00000301844
HG003_chrY	CAT	exon	9689385	9689913	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000937;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000937;transcript_name=HG003_chrY_T0000937;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000937:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000937;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000937;transcript_name=HG003_chrY_T0000937;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000937:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000937;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000937;transcript_name=HG003_chrY_T0000937;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000937:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000937;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000937;transcript_name=HG003_chrY_T0000937;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000937:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9690838	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000937;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000937;transcript_name=HG003_chrY_T0000937;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000937:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690839	9690939	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000937;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000937;transcript_name=HG003_chrY_T0000937;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000937:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690940	9691085	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000937;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000937;transcript_name=HG003_chrY_T0000937;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000937:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691086	9691191	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000937;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000937;transcript_name=HG003_chrY_T0000937;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000937:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691192	9691273	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000937;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000937;transcript_name=HG003_chrY_T0000937;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000937:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000937;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000937;transcript_name=HG003_chrY_T0000937;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000937:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692190	.	+	.	source_transcript=ENST00000782187.1;source_transcript_name=ENST00000782187;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782187.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782187.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000937;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000937;transcript_name=HG003_chrY_T0000937;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000937:5;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9689394	9692185	1000	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000938;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_G0000307;transcript_name=HG003_chrY_T0000938;gene_name=ENSG00000301844;ID=HG003_chrY_T0000938;Name=ENSG00000301844
HG003_chrY	CAT	exon	9689394	9689913	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000938;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000938;transcript_name=HG003_chrY_T0000938;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000938:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000938;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000938;transcript_name=HG003_chrY_T0000938;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000938:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000938;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000938;transcript_name=HG003_chrY_T0000938;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000938:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000938;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000938;transcript_name=HG003_chrY_T0000938;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000938:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9690838	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000938;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000938;transcript_name=HG003_chrY_T0000938;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000938:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690839	9690946	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000938;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000938;transcript_name=HG003_chrY_T0000938;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000938:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690947	9691085	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000938;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000938;transcript_name=HG003_chrY_T0000938;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000938:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691086	9691191	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000938;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000938;transcript_name=HG003_chrY_T0000938;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000938:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691192	9691273	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000938;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000938;transcript_name=HG003_chrY_T0000938;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000938:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000938;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000938;transcript_name=HG003_chrY_T0000938;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000938:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692185	.	+	.	source_transcript=ENST00000782188.1;source_transcript_name=ENST00000782188;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000938;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000938;transcript_name=HG003_chrY_T0000938;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000938:5;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9689416	9692180	1000	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000939;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_G0000307;transcript_name=HG003_chrY_T0000939;gene_name=ENSG00000301844;ID=HG003_chrY_T0000939;Name=ENSG00000301844
HG003_chrY	CAT	exon	9689416	9689913	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000939;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000939;transcript_name=HG003_chrY_T0000939;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000939:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000939;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000939;transcript_name=HG003_chrY_T0000939;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000939:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000939;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000939;transcript_name=HG003_chrY_T0000939;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000939:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000939;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000939;transcript_name=HG003_chrY_T0000939;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000939:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9690838	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000939;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000939;transcript_name=HG003_chrY_T0000939;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000939:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690839	9690939	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000939;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000939;transcript_name=HG003_chrY_T0000939;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000939:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690940	9691273	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000939;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000939;transcript_name=HG003_chrY_T0000939;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000939:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000939;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000939;transcript_name=HG003_chrY_T0000939;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000939:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692180	.	+	.	source_transcript=ENST00000782189.1;source_transcript_name=ENST00000782189;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000939;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000939;transcript_name=HG003_chrY_T0000939;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000939:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9689426	9692185	1000	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000940;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_G0000307;transcript_name=HG003_chrY_T0000940;gene_name=ENSG00000301844;ID=HG003_chrY_T0000940;Name=ENSG00000301844
HG003_chrY	CAT	exon	9689426	9689913	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000940;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000940;transcript_name=HG003_chrY_T0000940;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000940:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000940;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000940;transcript_name=HG003_chrY_T0000940;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000940:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000940;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000940;transcript_name=HG003_chrY_T0000940;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000940:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000940;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000940;transcript_name=HG003_chrY_T0000940;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000940:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9691085	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000940;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000940;transcript_name=HG003_chrY_T0000940;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000940:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691086	9691191	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000940;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000940;transcript_name=HG003_chrY_T0000940;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000940:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691192	9691273	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000940;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000940;transcript_name=HG003_chrY_T0000940;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000940:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000940;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000940;transcript_name=HG003_chrY_T0000940;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000940:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692185	.	+	.	source_transcript=ENST00000782190.1;source_transcript_name=ENST00000782190;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000940;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000940;transcript_name=HG003_chrY_T0000940;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000940:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9689428	9692185	1000	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000941;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_G0000307;transcript_name=HG003_chrY_T0000941;gene_name=ENSG00000301844;ID=HG003_chrY_T0000941;Name=ENSG00000301844
HG003_chrY	CAT	exon	9689428	9689913	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000941;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000941;transcript_name=HG003_chrY_T0000941;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000941:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000941;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000941;transcript_name=HG003_chrY_T0000941;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000941:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000941;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000941;transcript_name=HG003_chrY_T0000941;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000941:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000941;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000941;transcript_name=HG003_chrY_T0000941;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000941:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9690838	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000941;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000941;transcript_name=HG003_chrY_T0000941;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000941:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690839	9690939	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000941;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000941;transcript_name=HG003_chrY_T0000941;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000941:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690940	9691085	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000941;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000941;transcript_name=HG003_chrY_T0000941;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000941:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691086	9691180	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000941;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000941;transcript_name=HG003_chrY_T0000941;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000941:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691181	9691273	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000941;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000941;transcript_name=HG003_chrY_T0000941;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000941:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000941;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000941;transcript_name=HG003_chrY_T0000941;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000941:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692185	.	+	.	source_transcript=ENST00000782191.1;source_transcript_name=ENST00000782191;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782191.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782191.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000941;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000941;transcript_name=HG003_chrY_T0000941;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000941:5;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9689428	9692178	1000	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000942;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_G0000307;transcript_name=HG003_chrY_T0000942;gene_name=ENSG00000301844;ID=HG003_chrY_T0000942;Name=ENSG00000301844
HG003_chrY	CAT	exon	9689428	9689913	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000942;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000942;transcript_name=HG003_chrY_T0000942;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000942:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000942;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000942;transcript_name=HG003_chrY_T0000942;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000942:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000942;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000942;transcript_name=HG003_chrY_T0000942;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000942:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000942;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000942;transcript_name=HG003_chrY_T0000942;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000942:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9691273	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000942;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000942;transcript_name=HG003_chrY_T0000942;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000942:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000942;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000942;transcript_name=HG003_chrY_T0000942;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000942:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692178	.	+	.	source_transcript=ENST00000782192.1;source_transcript_name=ENST00000782192;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782192.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782192.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000942;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000942;transcript_name=HG003_chrY_T0000942;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000942:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9689448	9692185	1000	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000944;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_G0000307;transcript_name=HG003_chrY_T0000944;gene_name=ENSG00000301844;ID=HG003_chrY_T0000944;Name=ENSG00000301844
HG003_chrY	CAT	exon	9689448	9689913	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000944;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000944;transcript_name=HG003_chrY_T0000944;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000944:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000944;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000944;transcript_name=HG003_chrY_T0000944;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000944:0;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000944;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000944;transcript_name=HG003_chrY_T0000944;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000944:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000944;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000944;transcript_name=HG003_chrY_T0000944;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000944:1;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9691085	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000944;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000944;transcript_name=HG003_chrY_T0000944;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000944:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691086	9691180	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000944;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000944;transcript_name=HG003_chrY_T0000944;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000944:2;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691181	9691273	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000944;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000944;transcript_name=HG003_chrY_T0000944;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000944:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000944;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000944;transcript_name=HG003_chrY_T0000944;gene_name=ENSG00000301844;ID=intron:HG003_chrY_T0000944:3;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692185	.	+	.	source_transcript=ENST00000782193.1;source_transcript_name=ENST00000782193;source_gene=ENSG00000301844.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301844.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000782193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000782193.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301844;transcript_id=HG003_chrY_T0000944;gene_id=HG003_chrY_G0000307;Parent=HG003_chrY_T0000944;transcript_name=HG003_chrY_T0000944;gene_name=ENSG00000301844;ID=exon:HG003_chrY_T0000944:4;Name=ENSG00000301844;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9689428	9692178	.	+	.	source_gene_common_name=TSPY7P;source_gene=ENSG00000188656.8;gene_id=HG003_chrY_G0000308;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY7P;gene_sources=liftoff;ID=HG003_chrY_G0000308;Name=TSPY7P
HG003_chrY	CAT	transcript	9689428	9692178	1000	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000943;gene_id=HG003_chrY_G0000308;Parent=HG003_chrY_G0000308;transcript_name=HG003_chrY_T0000943;gene_name=TSPY7P;ID=HG003_chrY_T0000943;Name=TSPY7P
HG003_chrY	CAT	exon	9689428	9689913	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000943;gene_id=HG003_chrY_G0000308;Parent=HG003_chrY_T0000943;transcript_name=HG003_chrY_T0000943;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000943:0;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9689914	9690520	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000943;gene_id=HG003_chrY_G0000308;Parent=HG003_chrY_T0000943;transcript_name=HG003_chrY_T0000943;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000943:0;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690521	9690598	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000943;gene_id=HG003_chrY_G0000308;Parent=HG003_chrY_T0000943;transcript_name=HG003_chrY_T0000943;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000943:1;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690599	9690726	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000943;gene_id=HG003_chrY_G0000308;Parent=HG003_chrY_T0000943;transcript_name=HG003_chrY_T0000943;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000943:1;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690727	9690838	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000943;gene_id=HG003_chrY_G0000308;Parent=HG003_chrY_T0000943;transcript_name=HG003_chrY_T0000943;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000943:2;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9690839	9690939	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000943;gene_id=HG003_chrY_G0000308;Parent=HG003_chrY_T0000943;transcript_name=HG003_chrY_T0000943;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000943:2;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9690940	9691085	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000943;gene_id=HG003_chrY_G0000308;Parent=HG003_chrY_T0000943;transcript_name=HG003_chrY_T0000943;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000943:3;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691086	9691191	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000943;gene_id=HG003_chrY_G0000308;Parent=HG003_chrY_T0000943;transcript_name=HG003_chrY_T0000943;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000943:3;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691192	9691273	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000943;gene_id=HG003_chrY_G0000308;Parent=HG003_chrY_T0000943;transcript_name=HG003_chrY_T0000943;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000943:4;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9691274	9691967	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000943;gene_id=HG003_chrY_G0000308;Parent=HG003_chrY_T0000943;transcript_name=HG003_chrY_T0000943;gene_name=TSPY7P;ID=intron:HG003_chrY_T0000943:4;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9691968	9692178	.	+	.	source_transcript=ENST00000431358.2;source_transcript_name=TSPY7P-201;source_gene=ENSG00000188656.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188656.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000431358.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431358.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY7P;transcript_id=HG003_chrY_T0000943;gene_id=HG003_chrY_G0000308;Parent=HG003_chrY_T0000943;transcript_name=HG003_chrY_T0000943;gene_name=TSPY7P;ID=exon:HG003_chrY_T0000943:5;Name=TSPY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9699415	9707298	.	-	.	source_gene_common_name=ENSG00000290332;source_gene=ENSG00000290332.1_1;gene_id=HG003_chrY_G0000309;gene_biotype=lncRNA;gene_name=ENSG00000290332;gene_sources=liftoff;ID=HG003_chrY_G0000309;Name=ENSG00000290332
HG003_chrY	CAT	transcript	9699415	9707298	1000	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000945;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_G0000309;transcript_name=HG003_chrY_T0000945;gene_name=ENSG00000290332;ID=HG003_chrY_T0000945;Name=ENSG00000290332
HG003_chrY	CAT	exon	9699415	9701542	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000945;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000945;transcript_name=HG003_chrY_T0000945;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000945:0;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9701543	9705092	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000945;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000945;transcript_name=HG003_chrY_T0000945;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000945:0;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9705093	9705178	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000945;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000945;transcript_name=HG003_chrY_T0000945;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000945:1;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9705179	9706977	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000945;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000945;transcript_name=HG003_chrY_T0000945;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000945:1;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9706978	9707087	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000945;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000945;transcript_name=HG003_chrY_T0000945;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000945:2;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9707088	9707283	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000945;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000945;transcript_name=HG003_chrY_T0000945;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000945:2;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9707284	9707298	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000945;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000945;transcript_name=HG003_chrY_T0000945;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000945:3;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9701483	9707079	1000	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000946;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_G0000309;transcript_name=HG003_chrY_T0000946;gene_name=ENSG00000290332;ID=HG003_chrY_T0000946;Name=ENSG00000290332
HG003_chrY	CAT	exon	9701483	9701542	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000946;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000946;transcript_name=HG003_chrY_T0000946;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000946:0;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9701543	9705092	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000946;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000946;transcript_name=HG003_chrY_T0000946;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000946:0;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9705093	9705251	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000946;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000946;transcript_name=HG003_chrY_T0000946;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000946:1;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9705252	9706745	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000946;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000946;transcript_name=HG003_chrY_T0000946;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000946:1;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9706746	9706891	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000946;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000946;transcript_name=HG003_chrY_T0000946;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000946:2;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9706892	9706977	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000946;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000946;transcript_name=HG003_chrY_T0000946;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000946:2;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9706978	9707079	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1_1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1_1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000946;gene_id=HG003_chrY_G0000309;Parent=HG003_chrY_T0000946;transcript_name=HG003_chrY_T0000946;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000946:3;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9706746	9708738	.	-	.	source_gene_common_name=FAM197Y2;source_gene=ENSG00000234803.9;gene_id=HG003_chrY_G0000310;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000310;Name=FAM197Y2
HG003_chrY	CAT	transcript	9706746	9708738	1000	-	.	source_transcript=ENST00000598351.3;source_transcript_name=FAM197Y2-201;source_gene=ENSG00000234803.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234803.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000598351.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000598351.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=HG003_chrY_T0000947;gene_id=HG003_chrY_G0000310;Parent=HG003_chrY_G0000310;transcript_name=HG003_chrY_T0000947;gene_name=FAM197Y2;ID=HG003_chrY_T0000947;Name=FAM197Y2
HG003_chrY	CAT	exon	9706746	9706891	.	-	.	source_transcript=ENST00000598351.3;source_transcript_name=FAM197Y2-201;source_gene=ENSG00000234803.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234803.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000598351.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000598351.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=HG003_chrY_T0000947;gene_id=HG003_chrY_G0000310;Parent=HG003_chrY_T0000947;transcript_name=HG003_chrY_T0000947;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000947:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9706892	9708427	.	-	.	source_transcript=ENST00000598351.3;source_transcript_name=FAM197Y2-201;source_gene=ENSG00000234803.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234803.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000598351.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000598351.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=HG003_chrY_T0000947;gene_id=HG003_chrY_G0000310;Parent=HG003_chrY_T0000947;transcript_name=HG003_chrY_T0000947;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000947:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9708428	9708738	.	-	.	source_transcript=ENST00000598351.3;source_transcript_name=FAM197Y2-201;source_gene=ENSG00000234803.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234803.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000598351.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000598351.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=HG003_chrY_T0000947;gene_id=HG003_chrY_G0000310;Parent=HG003_chrY_T0000947;transcript_name=HG003_chrY_T0000947;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000947:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9709732	9712500	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1_5;gene_id=HG003_chrY_G0000311;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000311;Name=ENSG00000293749
HG003_chrY	CAT	transcript	9709732	9712500	1000	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_G0000311;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=HG003_chrY_T0000948;Name=ENSG00000293749
HG003_chrY	CAT	exon	9709732	9709824	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000948:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9709825	9710085	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000948:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710086	9710223	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000948:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710224	9710830	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000948:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710831	9710908	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000948:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000948:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711148	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000948:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711149	9711249	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000948:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711250	9711395	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000948:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711501	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000948:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711502	9711583	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000948:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000948:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712500	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000948;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000948;transcript_name=HG003_chrY_T0000948;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000948:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9709744	9712488	1000	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_G0000311;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=HG003_chrY_T0000950;Name=ENSG00000293749
HG003_chrY	CAT	exon	9709744	9709824	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000950:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9709825	9710085	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000950:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710086	9710223	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000950:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710224	9710830	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000950:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710831	9710908	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000950:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000950:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711148	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000950:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711149	9711256	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000950:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711257	9711395	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000950:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711501	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000950:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711502	9711583	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000950:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000950:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712488	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000950;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000950;transcript_name=HG003_chrY_T0000950;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000950:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9709753	9712495	1000	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_G0000311;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=HG003_chrY_T0000951;Name=ENSG00000293749
HG003_chrY	CAT	exon	9709753	9709824	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000951:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9709825	9710085	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000951:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710086	9710223	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000951:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710224	9710830	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000951:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710831	9710908	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000951:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000951:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711148	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000951:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711149	9711249	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000951:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711250	9711395	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000951:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711490	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000951:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711491	9711583	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000951:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000951:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712495	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000951;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000951;transcript_name=HG003_chrY_T0000951;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000951:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9709955	9712493	1000	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000952;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_G0000311;transcript_name=HG003_chrY_T0000952;gene_name=ENSG00000293749;ID=HG003_chrY_T0000952;Name=ENSG00000293749
HG003_chrY	CAT	exon	9709955	9710223	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000952;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000952;transcript_name=HG003_chrY_T0000952;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000952:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710224	9710830	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000952;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000952;transcript_name=HG003_chrY_T0000952;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000952:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710831	9710908	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000952;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000952;transcript_name=HG003_chrY_T0000952;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000952:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000952;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000952;transcript_name=HG003_chrY_T0000952;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000952:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711148	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000952;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000952;transcript_name=HG003_chrY_T0000952;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000952:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711149	9711249	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000952;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000952;transcript_name=HG003_chrY_T0000952;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000952:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711250	9711395	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000952;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000952;transcript_name=HG003_chrY_T0000952;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000952:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711501	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000952;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000952;transcript_name=HG003_chrY_T0000952;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000952:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711502	9711583	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000952;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000952;transcript_name=HG003_chrY_T0000952;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000952:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000952;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000952;transcript_name=HG003_chrY_T0000952;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000952:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712493	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000952;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000952;transcript_name=HG003_chrY_T0000952;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000952:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9710051	9712488	1000	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000953;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_G0000311;transcript_name=HG003_chrY_T0000953;gene_name=ENSG00000293749;ID=HG003_chrY_T0000953;Name=ENSG00000293749
HG003_chrY	CAT	exon	9710051	9710223	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000953;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000953;transcript_name=HG003_chrY_T0000953;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000953:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710224	9710830	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000953;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000953;transcript_name=HG003_chrY_T0000953;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000953:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710831	9710908	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000953;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000953;transcript_name=HG003_chrY_T0000953;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000953:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000953;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000953;transcript_name=HG003_chrY_T0000953;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000953:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711148	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000953;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000953;transcript_name=HG003_chrY_T0000953;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000953:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711149	9711256	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000953;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000953;transcript_name=HG003_chrY_T0000953;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000953:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711257	9711395	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000953;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000953;transcript_name=HG003_chrY_T0000953;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000953:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711501	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000953;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000953;transcript_name=HG003_chrY_T0000953;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000953:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711502	9711583	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000953;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000953;transcript_name=HG003_chrY_T0000953;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000953:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000953;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000953;transcript_name=HG003_chrY_T0000953;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000953:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712488	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000953;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000953;transcript_name=HG003_chrY_T0000953;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000953:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9710177	9712499	1000	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000954;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_G0000311;transcript_name=HG003_chrY_T0000954;gene_name=ENSG00000293749;ID=HG003_chrY_T0000954;Name=ENSG00000293749
HG003_chrY	CAT	exon	9710177	9710279	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000954;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000954;transcript_name=HG003_chrY_T0000954;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000954:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710280	9710848	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000954;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000954;transcript_name=HG003_chrY_T0000954;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000954:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710849	9710908	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000954;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000954;transcript_name=HG003_chrY_T0000954;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000954:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000954;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000954;transcript_name=HG003_chrY_T0000954;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000954:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711148	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000954;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000954;transcript_name=HG003_chrY_T0000954;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000954:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711149	9711249	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000954;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000954;transcript_name=HG003_chrY_T0000954;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000954:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711250	9711395	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000954;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000954;transcript_name=HG003_chrY_T0000954;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000954:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711501	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000954;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000954;transcript_name=HG003_chrY_T0000954;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000954:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711502	9711583	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000954;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000954;transcript_name=HG003_chrY_T0000954;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000954:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000954;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000954;transcript_name=HG003_chrY_T0000954;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000954:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712499	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1_5;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1_5;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000954;gene_id=HG003_chrY_G0000311;Parent=HG003_chrY_T0000954;transcript_name=HG003_chrY_T0000954;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000954:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9709738	9712300	.	+	.	source_gene_common_name=TSPY6P;source_gene=ENSG00000270073.1_5;gene_id=HG003_chrY_G0000312;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY6P;gene_sources=liftoff;ID=HG003_chrY_G0000312;Name=TSPY6P
HG003_chrY	CAT	transcript	9709738	9712300	1000	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_G0000312;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=HG003_chrY_T0000949;Name=TSPY6P
HG003_chrY	CAT	exon	9709738	9709948	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000949:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9709949	9709956	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000949:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9709957	9710223	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000949:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710224	9710830	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000949:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9710831	9710908	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000949:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000949:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711148	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000949:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711149	9711249	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000949:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711250	9711395	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000949:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711501	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000949:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711502	9711583	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000949:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000949:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712300	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1_5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1_5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000949;gene_id=HG003_chrY_G0000312;Parent=HG003_chrY_T0000949;transcript_name=HG003_chrY_T0000949;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000949:6;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9710878	9712495	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1;gene_id=HG003_chrY_G0000313;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000313;Name=ENSG00000293749
HG003_chrY	CAT	transcript	9710878	9712486	1000	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000955;gene_id=HG003_chrY_G0000313;Parent=HG003_chrY_G0000313;transcript_name=HG003_chrY_T0000955;gene_name=ENSG00000293749;ID=HG003_chrY_T0000955;Name=ENSG00000293749
HG003_chrY	CAT	exon	9710878	9710908	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000955;gene_id=HG003_chrY_G0000313;Parent=HG003_chrY_T0000955;transcript_name=HG003_chrY_T0000955;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000955:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9710909	9711036	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000955;gene_id=HG003_chrY_G0000313;Parent=HG003_chrY_T0000955;transcript_name=HG003_chrY_T0000955;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000955:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711037	9711395	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000955;gene_id=HG003_chrY_G0000313;Parent=HG003_chrY_T0000955;transcript_name=HG003_chrY_T0000955;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000955:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711396	9711501	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000955;gene_id=HG003_chrY_G0000313;Parent=HG003_chrY_T0000955;transcript_name=HG003_chrY_T0000955;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000955:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9711502	9711583	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000955;gene_id=HG003_chrY_G0000313;Parent=HG003_chrY_T0000955;transcript_name=HG003_chrY_T0000955;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000955:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000955;gene_id=HG003_chrY_G0000313;Parent=HG003_chrY_T0000955;transcript_name=HG003_chrY_T0000955;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000955:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712486	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000955;gene_id=HG003_chrY_G0000313;Parent=HG003_chrY_T0000955;transcript_name=HG003_chrY_T0000955;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000955:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9711423	9712495	1000	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000956;gene_id=HG003_chrY_G0000313;Parent=HG003_chrY_G0000313;transcript_name=HG003_chrY_T0000956;gene_name=ENSG00000293749;ID=HG003_chrY_T0000956;Name=ENSG00000293749
HG003_chrY	CAT	exon	9711423	9711583	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000956;gene_id=HG003_chrY_G0000313;Parent=HG003_chrY_T0000956;transcript_name=HG003_chrY_T0000956;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000956:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9711584	9712277	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000956;gene_id=HG003_chrY_G0000313;Parent=HG003_chrY_T0000956;transcript_name=HG003_chrY_T0000956;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000956:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9712278	9712495	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000956;gene_id=HG003_chrY_G0000313;Parent=HG003_chrY_T0000956;transcript_name=HG003_chrY_T0000956;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000956:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9719692	9727574	.	-	.	source_gene_common_name=ENSG00000290332;source_gene=ENSG00000290332.1;gene_id=HG003_chrY_G0000314;gene_biotype=lncRNA;gene_name=ENSG00000290332;gene_sources=liftoff;ID=HG003_chrY_G0000314;Name=ENSG00000290332
HG003_chrY	CAT	transcript	9719692	9727574	1000	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000957;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_G0000314;transcript_name=HG003_chrY_T0000957;gene_name=ENSG00000290332;ID=HG003_chrY_T0000957;Name=ENSG00000290332
HG003_chrY	CAT	exon	9719692	9721818	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000957;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000957;transcript_name=HG003_chrY_T0000957;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000957:0;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9721819	9725368	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000957;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000957;transcript_name=HG003_chrY_T0000957;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000957:0;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9725369	9725454	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000957;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000957;transcript_name=HG003_chrY_T0000957;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000957:1;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9725455	9727253	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000957;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000957;transcript_name=HG003_chrY_T0000957;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000957:1;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9727254	9727363	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000957;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000957;transcript_name=HG003_chrY_T0000957;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000957:2;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9727364	9727559	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000957;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000957;transcript_name=HG003_chrY_T0000957;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000957:2;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9727560	9727574	.	-	.	source_transcript=ENST00000448006.5;source_transcript_name=ENST00000448006;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000448006.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448006.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000957;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000957;transcript_name=HG003_chrY_T0000957;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000957:3;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9721759	9727355	1000	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000958;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_G0000314;transcript_name=HG003_chrY_T0000958;gene_name=ENSG00000290332;ID=HG003_chrY_T0000958;Name=ENSG00000290332
HG003_chrY	CAT	exon	9721759	9721818	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000958;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000958;transcript_name=HG003_chrY_T0000958;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000958:0;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9721819	9725368	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000958;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000958;transcript_name=HG003_chrY_T0000958;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000958:0;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9725369	9725527	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000958;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000958;transcript_name=HG003_chrY_T0000958;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000958:1;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9725528	9727021	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000958;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000958;transcript_name=HG003_chrY_T0000958;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000958:1;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9727022	9727167	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000958;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000958;transcript_name=HG003_chrY_T0000958;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000958:2;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9727168	9727253	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000958;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000958;transcript_name=HG003_chrY_T0000958;gene_name=ENSG00000290332;ID=intron:HG003_chrY_T0000958:2;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9727254	9727355	.	-	.	source_transcript=ENST00000418016.5;source_transcript_name=ENST00000418016;source_gene=ENSG00000290332.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290332.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000418016.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000418016.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290332;transcript_id=HG003_chrY_T0000958;gene_id=HG003_chrY_G0000314;Parent=HG003_chrY_T0000958;transcript_name=HG003_chrY_T0000958;gene_name=ENSG00000290332;ID=exon:HG003_chrY_T0000958:3;Name=ENSG00000290332;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9727022	9729014	.	-	.	source_gene_common_name=FAM197Y2;source_gene=ENSG00000234803.9;gene_id=HG003_chrY_G0000315;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y2;gene_sources=liftoff;ID=HG003_chrY_G0000315;Name=FAM197Y2
HG003_chrY	CAT	transcript	9727022	9729014	1000	-	.	source_transcript=ENST00000598351.3;source_transcript_name=FAM197Y2-201;source_gene=ENSG00000234803.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234803.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000598351.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000598351.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=HG003_chrY_T0000959;gene_id=HG003_chrY_G0000315;Parent=HG003_chrY_G0000315;transcript_name=HG003_chrY_T0000959;gene_name=FAM197Y2;ID=HG003_chrY_T0000959;Name=FAM197Y2
HG003_chrY	CAT	exon	9727022	9727167	.	-	.	source_transcript=ENST00000598351.3;source_transcript_name=FAM197Y2-201;source_gene=ENSG00000234803.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234803.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000598351.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000598351.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=HG003_chrY_T0000959;gene_id=HG003_chrY_G0000315;Parent=HG003_chrY_T0000959;transcript_name=HG003_chrY_T0000959;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000959:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9727168	9728703	.	-	.	source_transcript=ENST00000598351.3;source_transcript_name=FAM197Y2-201;source_gene=ENSG00000234803.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234803.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000598351.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000598351.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=HG003_chrY_T0000959;gene_id=HG003_chrY_G0000315;Parent=HG003_chrY_T0000959;transcript_name=HG003_chrY_T0000959;gene_name=FAM197Y2;ID=intron:HG003_chrY_T0000959:0;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9728704	9729014	.	-	.	source_transcript=ENST00000598351.3;source_transcript_name=FAM197Y2-201;source_gene=ENSG00000234803.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234803.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000598351.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000598351.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y2;transcript_id=HG003_chrY_T0000959;gene_id=HG003_chrY_G0000315;Parent=HG003_chrY_T0000959;transcript_name=HG003_chrY_T0000959;gene_name=FAM197Y2;ID=exon:HG003_chrY_T0000959:1;Name=FAM197Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9729968	9732765	.	+	.	source_gene_common_name=TSPY3;source_gene=ENSG00000228927.10;gene_id=HG003_chrY_G0000316;gene_biotype=protein_coding;gene_name=TSPY3;gene_sources=liftoff;ID=HG003_chrY_G0000316;Name=TSPY3
HG003_chrY	CAT	transcript	9729968	9732765	100	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_G0000316;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=HG003_chrY_T0000960;Name=TSPY3
HG003_chrY	CAT	exon	9729968	9730499	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=exon:HG003_chrY_T0000960:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9730014	9730499	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000960:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9730014	9730016	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000960;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9730500	9731106	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=intron:HG003_chrY_T0000960:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731107	9731184	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=exon:HG003_chrY_T0000960:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731107	9731184	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000960:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731185	9731312	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=intron:HG003_chrY_T0000960:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731313	9731424	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=exon:HG003_chrY_T0000960:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731313	9731424	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000960:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731425	9731525	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=intron:HG003_chrY_T0000960:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731526	9731671	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=exon:HG003_chrY_T0000960:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731526	9731671	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000960:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731672	9731777	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=intron:HG003_chrY_T0000960:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731778	9731859	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=exon:HG003_chrY_T0000960:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731778	9731859	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000960:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731860	9732553	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=intron:HG003_chrY_T0000960:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9732554	9732765	.	+	.	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=exon:HG003_chrY_T0000960:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9732554	9732576	.	+	2	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000960:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9732574	9732576	.	+	0	source_transcript=ENST00000457222.6;source_transcript_name=TSPY3-203;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000457222.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457222.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000960;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000960;transcript_name=HG003_chrY_T0000960;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000960;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9730014	9732764	100	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_G0000316;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=HG003_chrY_T0000961;Name=TSPY3
HG003_chrY	CAT	exon	9730014	9730499	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=exon:HG003_chrY_T0000961:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9730014	9730499	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000961:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9730014	9730016	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000961;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9730500	9731106	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=intron:HG003_chrY_T0000961:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731107	9731184	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=exon:HG003_chrY_T0000961:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731107	9731184	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000961:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731185	9731312	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=intron:HG003_chrY_T0000961:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731313	9731424	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=exon:HG003_chrY_T0000961:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731313	9731424	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000961:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731425	9731525	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=intron:HG003_chrY_T0000961:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731526	9731671	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=exon:HG003_chrY_T0000961:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731526	9731671	.	+	2	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000961:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731672	9731766	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=intron:HG003_chrY_T0000961:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731767	9731859	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=exon:HG003_chrY_T0000961:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731767	9731829	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000961:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9731827	9731829	.	+	0	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000961;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731860	9732553	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=intron:HG003_chrY_T0000961:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9732554	9732764	.	+	.	source_transcript=ENST00000424594.1;source_transcript_name=TSPY3-201;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000424594.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424594.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000961;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000961;transcript_name=HG003_chrY_T0000961;gene_name=TSPY3;ID=exon:HG003_chrY_T0000961:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9730014	9732576	100	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_G0000316;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=HG003_chrY_T0000962;Name=TSPY3
HG003_chrY	CAT	exon	9730014	9730100	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=exon:HG003_chrY_T0000962:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9730014	9730100	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000962:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9730014	9730016	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=start_codon:HG003_chrY_T0000962;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9730101	9730361	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=intron:HG003_chrY_T0000962:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9730362	9730499	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=exon:HG003_chrY_T0000962:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9730362	9730499	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000962:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9730500	9731106	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=intron:HG003_chrY_T0000962:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731107	9731184	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=exon:HG003_chrY_T0000962:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731107	9731184	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000962:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731185	9731312	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=intron:HG003_chrY_T0000962:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731313	9731424	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=exon:HG003_chrY_T0000962:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731313	9731424	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000962:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731425	9731525	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=intron:HG003_chrY_T0000962:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731526	9731671	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=exon:HG003_chrY_T0000962:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731526	9731671	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000962:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731672	9731777	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=intron:HG003_chrY_T0000962:4;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731778	9731859	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=exon:HG003_chrY_T0000962:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9731778	9731859	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000962:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731860	9732553	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=intron:HG003_chrY_T0000962:5;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9732554	9732576	.	+	.	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=exon:HG003_chrY_T0000962:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9732554	9732576	.	+	2	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=CDS:HG003_chrY_T0000962:6;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9732574	9732576	.	+	0	source_transcript=ENST00000440483.5;source_transcript_name=TSPY3-202;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440483.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440483.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000962;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000962;transcript_name=HG003_chrY_T0000962;gene_name=TSPY3;ID=stop_codon:HG003_chrY_T0000962;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9730014	9732771	1000	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000963;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_G0000316;transcript_name=HG003_chrY_T0000963;gene_name=TSPY3;ID=HG003_chrY_T0000963;Name=TSPY3
HG003_chrY	CAT	exon	9730014	9730499	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000963;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000963;transcript_name=HG003_chrY_T0000963;gene_name=TSPY3;ID=exon:HG003_chrY_T0000963:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9730500	9731106	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000963;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000963;transcript_name=HG003_chrY_T0000963;gene_name=TSPY3;ID=intron:HG003_chrY_T0000963:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731107	9731184	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000963;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000963;transcript_name=HG003_chrY_T0000963;gene_name=TSPY3;ID=exon:HG003_chrY_T0000963:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731185	9731312	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000963;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000963;transcript_name=HG003_chrY_T0000963;gene_name=TSPY3;ID=intron:HG003_chrY_T0000963:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731313	9731859	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000963;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000963;transcript_name=HG003_chrY_T0000963;gene_name=TSPY3;ID=exon:HG003_chrY_T0000963:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731860	9731986	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000963;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000963;transcript_name=HG003_chrY_T0000963;gene_name=TSPY3;ID=intron:HG003_chrY_T0000963:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731987	9732771	.	+	.	source_transcript=ENST00000491844.1;source_transcript_name=TSPY3-205;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491844.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491844.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000963;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000963;transcript_name=HG003_chrY_T0000963;gene_name=TSPY3;ID=exon:HG003_chrY_T0000963:3;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9731374	9732756	1000	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000964;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_G0000316;transcript_name=HG003_chrY_T0000964;gene_name=TSPY3;ID=HG003_chrY_T0000964;Name=TSPY3
HG003_chrY	CAT	exon	9731374	9731671	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000964;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000964;transcript_name=HG003_chrY_T0000964;gene_name=TSPY3;ID=exon:HG003_chrY_T0000964:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731672	9731766	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000964;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000964;transcript_name=HG003_chrY_T0000964;gene_name=TSPY3;ID=intron:HG003_chrY_T0000964:0;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9731767	9731859	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000964;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000964;transcript_name=HG003_chrY_T0000964;gene_name=TSPY3;ID=exon:HG003_chrY_T0000964:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9731860	9732553	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000964;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000964;transcript_name=HG003_chrY_T0000964;gene_name=TSPY3;ID=intron:HG003_chrY_T0000964:1;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9732554	9732756	.	+	.	source_transcript=ENST00000469322.1;source_transcript_name=TSPY3-204;source_gene=ENSG00000228927.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000228927.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY3;transcript_id=HG003_chrY_T0000964;gene_id=HG003_chrY_G0000316;Parent=HG003_chrY_T0000964;transcript_name=HG003_chrY_T0000964;gene_name=TSPY3;ID=exon:HG003_chrY_T0000964:2;Name=TSPY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9741929	9747675	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000290330.1;gene_id=HG003_chrY_G0000317;gene_biotype=lncRNA;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000317;Name=FAM197Y5
HG003_chrY	CAT	transcript	9741929	9747675	1000	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000965;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_G0000317;transcript_name=HG003_chrY_T0000965;gene_name=FAM197Y5;ID=HG003_chrY_T0000965;Name=FAM197Y5
HG003_chrY	CAT	exon	9741929	9742118	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000965;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_T0000965;transcript_name=HG003_chrY_T0000965;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000965:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9742119	9745668	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000965;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_T0000965;transcript_name=HG003_chrY_T0000965;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000965:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9745669	9745754	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000965;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_T0000965;transcript_name=HG003_chrY_T0000965;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000965:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9745755	9747561	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000965;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_T0000965;transcript_name=HG003_chrY_T0000965;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000965:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9747562	9747675	.	-	.	source_transcript=ENST00000615605.1;source_transcript_name=FAM197Y5-202;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000615605.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615605.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000965;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_T0000965;transcript_name=HG003_chrY_T0000965;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000965:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9742059	9747663	1000	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000966;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_G0000317;transcript_name=HG003_chrY_T0000966;gene_name=FAM197Y5;ID=HG003_chrY_T0000966;Name=FAM197Y5
HG003_chrY	CAT	exon	9742059	9742118	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000966;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_T0000966;transcript_name=HG003_chrY_T0000966;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000966:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9742119	9745668	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000966;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_T0000966;transcript_name=HG003_chrY_T0000966;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000966:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9745669	9745827	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000966;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_T0000966;transcript_name=HG003_chrY_T0000966;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000966:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9745828	9747329	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000966;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_T0000966;transcript_name=HG003_chrY_T0000966;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000966:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9747330	9747475	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000966;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_T0000966;transcript_name=HG003_chrY_T0000966;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000966:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9747476	9747561	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000966;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_T0000966;transcript_name=HG003_chrY_T0000966;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000966:2;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9747562	9747663	.	-	.	source_transcript=ENST00000619815.4;source_transcript_name=FAM197Y5-203;source_gene=ENSG00000290330.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290330.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000619815.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000619815.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000966;gene_id=HG003_chrY_G0000317;Parent=HG003_chrY_T0000966;transcript_name=HG003_chrY_T0000966;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000966:3;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9747330	9749322	.	-	.	source_gene_common_name=FAM197Y5;source_gene=ENSG00000225516.8;gene_id=HG003_chrY_G0000318;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y5;gene_sources=liftoff;ID=HG003_chrY_G0000318;Name=FAM197Y5
HG003_chrY	CAT	transcript	9747330	9749322	1000	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000967;gene_id=HG003_chrY_G0000318;Parent=HG003_chrY_G0000318;transcript_name=HG003_chrY_T0000967;gene_name=FAM197Y5;ID=HG003_chrY_T0000967;Name=FAM197Y5
HG003_chrY	CAT	exon	9747330	9747475	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000967;gene_id=HG003_chrY_G0000318;Parent=HG003_chrY_T0000967;transcript_name=HG003_chrY_T0000967;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000967:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9747476	9749011	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000967;gene_id=HG003_chrY_G0000318;Parent=HG003_chrY_T0000967;transcript_name=HG003_chrY_T0000967;gene_name=FAM197Y5;ID=intron:HG003_chrY_T0000967:0;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9749012	9749322	.	-	.	source_transcript=ENST00000423213.4;source_transcript_name=FAM197Y5-201;source_gene=ENSG00000225516.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225516.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423213.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423213.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y5;transcript_id=HG003_chrY_T0000967;gene_id=HG003_chrY_G0000318;Parent=HG003_chrY_T0000967;transcript_name=HG003_chrY_T0000967;gene_name=FAM197Y5;ID=exon:HG003_chrY_T0000967:1;Name=FAM197Y5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9750276	9753072	.	+	.	source_gene_common_name=TSPY10;source_gene=ENSG00000236424.7;gene_id=HG003_chrY_G0000319;gene_biotype=protein_coding;gene_name=TSPY10;gene_sources=liftoff;ID=HG003_chrY_G0000319;Name=TSPY10
HG003_chrY	CAT	transcript	9750276	9753072	100	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_G0000319;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=HG003_chrY_T0000968;Name=TSPY10
HG003_chrY	CAT	exon	9750276	9750807	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=exon:HG003_chrY_T0000968:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9750322	9750807	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000968:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9750322	9750324	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000968;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9750808	9751414	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=intron:HG003_chrY_T0000968:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751415	9751492	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=exon:HG003_chrY_T0000968:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751415	9751492	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000968:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751493	9751620	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=intron:HG003_chrY_T0000968:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751621	9751732	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=exon:HG003_chrY_T0000968:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751621	9751732	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000968:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751733	9751833	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=intron:HG003_chrY_T0000968:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751834	9751979	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=exon:HG003_chrY_T0000968:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751834	9751979	.	+	2	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000968:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751980	9752085	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=intron:HG003_chrY_T0000968:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752086	9752167	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=exon:HG003_chrY_T0000968:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9752086	9752167	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000968:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9752168	9752861	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=intron:HG003_chrY_T0000968:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752862	9753072	.	+	.	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=exon:HG003_chrY_T0000968:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9752862	9752884	.	+	2	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000968:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9752882	9752884	.	+	0	source_transcript=ENST00000428845.6;source_transcript_name=TSPY10-201;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000428845.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000428845.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000968;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000968;transcript_name=HG003_chrY_T0000968;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000968;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9750322	9753071	100	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_G0000319;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=HG003_chrY_T0000969;Name=TSPY10
HG003_chrY	CAT	exon	9750322	9750807	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=exon:HG003_chrY_T0000969:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9750322	9750807	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000969:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9750322	9750324	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=start_codon:HG003_chrY_T0000969;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9750808	9751414	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=intron:HG003_chrY_T0000969:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751415	9751492	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=exon:HG003_chrY_T0000969:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751415	9751492	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000969:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751493	9751620	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=intron:HG003_chrY_T0000969:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751621	9751732	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=exon:HG003_chrY_T0000969:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751621	9751732	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000969:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751733	9751833	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=intron:HG003_chrY_T0000969:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751834	9751979	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=exon:HG003_chrY_T0000969:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9751834	9751979	.	+	2	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000969:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751980	9752074	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=intron:HG003_chrY_T0000969:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752075	9752167	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=exon:HG003_chrY_T0000969:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9752075	9752137	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=CDS:HG003_chrY_T0000969:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9752135	9752137	.	+	0	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=stop_codon:HG003_chrY_T0000969;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9752168	9752861	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=intron:HG003_chrY_T0000969:4;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752862	9753071	.	+	.	source_transcript=ENST00000444056.1;source_transcript_name=TSPY10-202;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000444056.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444056.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000969;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000969;transcript_name=HG003_chrY_T0000969;gene_name=TSPY10;ID=exon:HG003_chrY_T0000969:5;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9750322	9753078	1000	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000970;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_G0000319;transcript_name=HG003_chrY_T0000970;gene_name=TSPY10;ID=HG003_chrY_T0000970;Name=TSPY10
HG003_chrY	CAT	exon	9750322	9750807	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000970;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000970;transcript_name=HG003_chrY_T0000970;gene_name=TSPY10;ID=exon:HG003_chrY_T0000970:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9750808	9751414	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000970;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000970;transcript_name=HG003_chrY_T0000970;gene_name=TSPY10;ID=intron:HG003_chrY_T0000970:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751415	9751492	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000970;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000970;transcript_name=HG003_chrY_T0000970;gene_name=TSPY10;ID=exon:HG003_chrY_T0000970:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751493	9751620	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000970;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000970;transcript_name=HG003_chrY_T0000970;gene_name=TSPY10;ID=intron:HG003_chrY_T0000970:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9751621	9752167	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000970;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000970;transcript_name=HG003_chrY_T0000970;gene_name=TSPY10;ID=exon:HG003_chrY_T0000970:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9752168	9752294	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000970;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000970;transcript_name=HG003_chrY_T0000970;gene_name=TSPY10;ID=intron:HG003_chrY_T0000970:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752295	9753078	.	+	.	source_transcript=ENST00000489397.1;source_transcript_name=TSPY10-203;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000489397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000489397.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000970;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000970;transcript_name=HG003_chrY_T0000970;gene_name=TSPY10;ID=exon:HG003_chrY_T0000970:3;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9751682	9753063	1000	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000971;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_G0000319;transcript_name=HG003_chrY_T0000971;gene_name=TSPY10;ID=HG003_chrY_T0000971;Name=TSPY10
HG003_chrY	CAT	exon	9751682	9751979	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000971;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000971;transcript_name=HG003_chrY_T0000971;gene_name=TSPY10;ID=exon:HG003_chrY_T0000971:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9751980	9752085	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000971;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000971;transcript_name=HG003_chrY_T0000971;gene_name=TSPY10;ID=intron:HG003_chrY_T0000971:0;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752086	9752167	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000971;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000971;transcript_name=HG003_chrY_T0000971;gene_name=TSPY10;ID=exon:HG003_chrY_T0000971:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9752168	9752861	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000971;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000971;transcript_name=HG003_chrY_T0000971;gene_name=TSPY10;ID=intron:HG003_chrY_T0000971:1;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9752862	9753063	.	+	.	source_transcript=ENST00000495839.1;source_transcript_name=TSPY10-204;source_gene=ENSG00000236424.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000236424.7;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495839.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495839.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY10;transcript_id=HG003_chrY_T0000971;gene_id=HG003_chrY_G0000319;Parent=HG003_chrY_T0000971;transcript_name=HG003_chrY_T0000971;gene_name=TSPY10;ID=exon:HG003_chrY_T0000971:2;Name=TSPY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9760336	9768213	.	-	.	source_gene_common_name=FAM197Y3;source_gene=ENSG00000290607.1;gene_id=HG003_chrY_G0000320;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000320;Name=FAM197Y3
HG003_chrY	CAT	transcript	9760336	9768213	1000	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000972;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_G0000320;transcript_name=HG003_chrY_T0000972;gene_name=FAM197Y3;ID=HG003_chrY_T0000972;Name=FAM197Y3
HG003_chrY	CAT	exon	9760336	9762449	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000972;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000972;transcript_name=HG003_chrY_T0000972;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000972:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9762450	9765998	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000972;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000972;transcript_name=HG003_chrY_T0000972;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000972:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9765999	9766084	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000972;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000972;transcript_name=HG003_chrY_T0000972;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000972:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9766085	9767892	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000972;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000972;transcript_name=HG003_chrY_T0000972;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000972:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9767893	9768002	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000972;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000972;transcript_name=HG003_chrY_T0000972;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000972:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9768003	9768198	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000972;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000972;transcript_name=HG003_chrY_T0000972;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000972:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9768199	9768213	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000972;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000972;transcript_name=HG003_chrY_T0000972;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000972:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9762390	9767994	1000	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000973;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_G0000320;transcript_name=HG003_chrY_T0000973;gene_name=FAM197Y3;ID=HG003_chrY_T0000973;Name=FAM197Y3
HG003_chrY	CAT	exon	9762390	9762449	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000973;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000973;transcript_name=HG003_chrY_T0000973;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000973:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9762450	9765998	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000973;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000973;transcript_name=HG003_chrY_T0000973;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000973:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9765999	9766157	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000973;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000973;transcript_name=HG003_chrY_T0000973;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000973:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9766158	9767660	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000973;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000973;transcript_name=HG003_chrY_T0000973;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000973:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9767661	9767806	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000973;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000973;transcript_name=HG003_chrY_T0000973;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000973:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9767807	9767892	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000973;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000973;transcript_name=HG003_chrY_T0000973;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000973:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9767893	9767994	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000973;gene_id=HG003_chrY_G0000320;Parent=HG003_chrY_T0000973;transcript_name=HG003_chrY_T0000973;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000973:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9767661	9769653	.	-	.	source_gene_common_name=FAM197Y3;source_gene=ENSG00000230066.7_1;gene_id=HG003_chrY_G0000321;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000321;Name=FAM197Y3
HG003_chrY	CAT	transcript	9767661	9769653	1000	-	.	source_transcript=ENST00000618346.2;source_transcript_name=FAM197Y3-201;source_gene=ENSG00000230066.7_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230066.7_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000618346.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618346.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000974;gene_id=HG003_chrY_G0000321;Parent=HG003_chrY_G0000321;transcript_name=HG003_chrY_T0000974;gene_name=FAM197Y3;ID=HG003_chrY_T0000974;Name=FAM197Y3
HG003_chrY	CAT	exon	9767661	9767806	.	-	.	source_transcript=ENST00000618346.2;source_transcript_name=FAM197Y3-201;source_gene=ENSG00000230066.7_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230066.7_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000618346.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618346.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000974;gene_id=HG003_chrY_G0000321;Parent=HG003_chrY_T0000974;transcript_name=HG003_chrY_T0000974;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000974:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9767807	9769342	.	-	.	source_transcript=ENST00000618346.2;source_transcript_name=FAM197Y3-201;source_gene=ENSG00000230066.7_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230066.7_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000618346.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618346.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000974;gene_id=HG003_chrY_G0000321;Parent=HG003_chrY_T0000974;transcript_name=HG003_chrY_T0000974;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000974:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9769343	9769653	.	-	.	source_transcript=ENST00000618346.2;source_transcript_name=FAM197Y3-201;source_gene=ENSG00000230066.7_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230066.7_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000618346.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618346.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000974;gene_id=HG003_chrY_G0000321;Parent=HG003_chrY_T0000974;transcript_name=HG003_chrY_T0000974;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000974:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9770644	9773412	.	+	.	source_gene_common_name=ENSG00000293749;source_gene=ENSG00000293749.1;gene_id=HG003_chrY_G0000322;gene_biotype=lncRNA;gene_name=ENSG00000293749;gene_sources=liftoff;ID=HG003_chrY_G0000322;Name=ENSG00000293749
HG003_chrY	CAT	transcript	9770644	9773412	1000	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_G0000322;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=HG003_chrY_T0000975;Name=ENSG00000293749
HG003_chrY	CAT	exon	9770644	9770736	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000975:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9770737	9770997	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000975:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9770998	9771135	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000975:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771136	9771742	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000975:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771743	9771820	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000975:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771821	9771948	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000975:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771949	9772060	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000975:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772061	9772161	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000975:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772162	9772307	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000975:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772308	9772413	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000975:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772414	9772495	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000975:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000975:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773412	.	+	.	source_transcript=ENST00000718725.1;source_transcript_name=ENST00000718725;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000975;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000975;transcript_name=HG003_chrY_T0000975;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000975:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9770656	9773400	1000	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_G0000322;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=HG003_chrY_T0000977;Name=ENSG00000293749
HG003_chrY	CAT	exon	9770656	9770736	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000977:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9770737	9770997	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000977:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9770998	9771135	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000977:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771136	9771742	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000977:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771743	9771820	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000977:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771821	9771948	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000977:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771949	9772060	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000977:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772061	9772168	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000977:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772169	9772307	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000977:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772308	9772413	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000977:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772414	9772495	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000977:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000977:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773400	.	+	.	source_transcript=ENST00000718726.1;source_transcript_name=ENST00000718726;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000977;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000977;transcript_name=HG003_chrY_T0000977;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000977:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9770665	9773407	1000	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_G0000322;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=HG003_chrY_T0000978;Name=ENSG00000293749
HG003_chrY	CAT	exon	9770665	9770736	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000978:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9770737	9770997	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000978:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9770998	9771135	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000978:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771136	9771742	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000978:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771743	9771820	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000978:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771821	9771948	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000978:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771949	9772060	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000978:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772061	9772161	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000978:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772162	9772307	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000978:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772308	9772402	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000978:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772403	9772495	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000978:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000978:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773407	.	+	.	source_transcript=ENST00000718727.1;source_transcript_name=ENST00000718727;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000978;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000978;transcript_name=HG003_chrY_T0000978;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000978:6;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9770867	9773405	1000	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000979;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_G0000322;transcript_name=HG003_chrY_T0000979;gene_name=ENSG00000293749;ID=HG003_chrY_T0000979;Name=ENSG00000293749
HG003_chrY	CAT	exon	9770867	9771135	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000979;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000979;transcript_name=HG003_chrY_T0000979;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000979:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771136	9771742	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000979;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000979;transcript_name=HG003_chrY_T0000979;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000979:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771743	9771820	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000979;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000979;transcript_name=HG003_chrY_T0000979;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000979:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771821	9771948	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000979;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000979;transcript_name=HG003_chrY_T0000979;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000979:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771949	9772060	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000979;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000979;transcript_name=HG003_chrY_T0000979;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000979:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772061	9772161	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000979;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000979;transcript_name=HG003_chrY_T0000979;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000979:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772162	9772307	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000979;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000979;transcript_name=HG003_chrY_T0000979;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000979:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772308	9772413	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000979;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000979;transcript_name=HG003_chrY_T0000979;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000979:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772414	9772495	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000979;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000979;transcript_name=HG003_chrY_T0000979;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000979:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000979;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000979;transcript_name=HG003_chrY_T0000979;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000979:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773405	.	+	.	source_transcript=ENST00000718728.1;source_transcript_name=ENST00000718728;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000979;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000979;transcript_name=HG003_chrY_T0000979;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000979:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9770963	9773400	1000	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000980;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_G0000322;transcript_name=HG003_chrY_T0000980;gene_name=ENSG00000293749;ID=HG003_chrY_T0000980;Name=ENSG00000293749
HG003_chrY	CAT	exon	9770963	9771135	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000980;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000980;transcript_name=HG003_chrY_T0000980;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000980:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771136	9771742	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000980;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000980;transcript_name=HG003_chrY_T0000980;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000980:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771743	9771820	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000980;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000980;transcript_name=HG003_chrY_T0000980;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000980:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771821	9771948	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000980;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000980;transcript_name=HG003_chrY_T0000980;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000980:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771949	9772060	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000980;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000980;transcript_name=HG003_chrY_T0000980;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000980:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772061	9772168	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000980;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000980;transcript_name=HG003_chrY_T0000980;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000980:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772169	9772307	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000980;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000980;transcript_name=HG003_chrY_T0000980;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000980:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772308	9772413	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000980;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000980;transcript_name=HG003_chrY_T0000980;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000980:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772414	9772495	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000980;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000980;transcript_name=HG003_chrY_T0000980;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000980:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000980;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000980;transcript_name=HG003_chrY_T0000980;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000980:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773400	.	+	.	source_transcript=ENST00000718729.1;source_transcript_name=ENST00000718729;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000980;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000980;transcript_name=HG003_chrY_T0000980;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000980:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9771089	9773411	1000	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000981;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_G0000322;transcript_name=HG003_chrY_T0000981;gene_name=ENSG00000293749;ID=HG003_chrY_T0000981;Name=ENSG00000293749
HG003_chrY	CAT	exon	9771089	9771191	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000981;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000981;transcript_name=HG003_chrY_T0000981;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000981:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771192	9771760	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000981;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000981;transcript_name=HG003_chrY_T0000981;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000981:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771761	9771820	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000981;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000981;transcript_name=HG003_chrY_T0000981;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000981:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771821	9771948	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000981;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000981;transcript_name=HG003_chrY_T0000981;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000981:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771949	9772060	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000981;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000981;transcript_name=HG003_chrY_T0000981;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000981:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772061	9772161	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000981;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000981;transcript_name=HG003_chrY_T0000981;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000981:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772162	9772307	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000981;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000981;transcript_name=HG003_chrY_T0000981;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000981:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772308	9772413	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000981;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000981;transcript_name=HG003_chrY_T0000981;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000981:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772414	9772495	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000981;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000981;transcript_name=HG003_chrY_T0000981;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000981:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000981;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000981;transcript_name=HG003_chrY_T0000981;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000981:4;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773411	.	+	.	source_transcript=ENST00000718730.1;source_transcript_name=ENST00000718730;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000981;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000981;transcript_name=HG003_chrY_T0000981;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000981:5;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9771790	9773398	1000	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000982;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_G0000322;transcript_name=HG003_chrY_T0000982;gene_name=ENSG00000293749;ID=HG003_chrY_T0000982;Name=ENSG00000293749
HG003_chrY	CAT	exon	9771790	9771820	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000982;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000982;transcript_name=HG003_chrY_T0000982;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000982:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771821	9771948	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000982;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000982;transcript_name=HG003_chrY_T0000982;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000982:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771949	9772307	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000982;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000982;transcript_name=HG003_chrY_T0000982;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000982:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772308	9772413	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000982;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000982;transcript_name=HG003_chrY_T0000982;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000982:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772414	9772495	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000982;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000982;transcript_name=HG003_chrY_T0000982;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000982:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000982;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000982;transcript_name=HG003_chrY_T0000982;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000982:2;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773398	.	+	.	source_transcript=ENST00000718731.1;source_transcript_name=ENST00000718731;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000982;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000982;transcript_name=HG003_chrY_T0000982;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000982:3;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9772335	9773407	1000	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000983;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_G0000322;transcript_name=HG003_chrY_T0000983;gene_name=ENSG00000293749;ID=HG003_chrY_T0000983;Name=ENSG00000293749
HG003_chrY	CAT	exon	9772335	9772495	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000983;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000983;transcript_name=HG003_chrY_T0000983;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000983:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000983;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000983;transcript_name=HG003_chrY_T0000983;gene_name=ENSG00000293749;ID=intron:HG003_chrY_T0000983:0;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773407	.	+	.	source_transcript=ENST00000718732.1;source_transcript_name=ENST00000718732;source_gene=ENSG00000293749.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293749.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000718732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000718732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293749;transcript_id=HG003_chrY_T0000983;gene_id=HG003_chrY_G0000322;Parent=HG003_chrY_T0000983;transcript_name=HG003_chrY_T0000983;gene_name=ENSG00000293749;ID=exon:HG003_chrY_T0000983:1;Name=ENSG00000293749;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9770650	9773212	.	+	.	source_gene_common_name=TSPY6P;source_gene=ENSG00000270073.1;gene_id=HG003_chrY_G0000323;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY6P;gene_sources=liftoff;ID=HG003_chrY_G0000323;Name=TSPY6P
HG003_chrY	CAT	transcript	9770650	9773212	1000	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_G0000323;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=HG003_chrY_T0000976;Name=TSPY6P
HG003_chrY	CAT	exon	9770650	9770860	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000976:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9770861	9770868	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000976:0;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9770869	9771135	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000976:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771136	9771742	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000976:1;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771743	9771820	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000976:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9771821	9771948	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000976:2;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9771949	9772060	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000976:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772061	9772161	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000976:3;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772162	9772307	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000976:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772308	9772413	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000976:4;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9772414	9772495	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000976:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9772496	9773189	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=intron:HG003_chrY_T0000976:5;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9773190	9773212	.	+	.	source_transcript=ENST00000448518.1;source_transcript_name=TSPY6P-201;source_gene=ENSG00000270073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000270073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000448518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000448518.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY6P;transcript_id=HG003_chrY_T0000976;gene_id=HG003_chrY_G0000323;Parent=HG003_chrY_T0000976;transcript_name=HG003_chrY_T0000976;gene_name=TSPY6P;ID=exon:HG003_chrY_T0000976:6;Name=TSPY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9780646	9788523	.	-	.	source_gene_common_name=FAM197Y3;source_gene=ENSG00000290607.1;gene_id=HG003_chrY_G0000324;gene_biotype=lncRNA;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000324;Name=FAM197Y3
HG003_chrY	CAT	transcript	9780646	9788523	1000	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000984;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_G0000324;transcript_name=HG003_chrY_T0000984;gene_name=FAM197Y3;ID=HG003_chrY_T0000984;Name=FAM197Y3
HG003_chrY	CAT	exon	9780646	9782771	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000984;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000984;transcript_name=HG003_chrY_T0000984;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000984:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9782772	9786322	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000984;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000984;transcript_name=HG003_chrY_T0000984;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000984:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9786323	9786408	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000984;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000984;transcript_name=HG003_chrY_T0000984;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000984:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9786409	9788202	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000984;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000984;transcript_name=HG003_chrY_T0000984;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000984:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9788203	9788312	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000984;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000984;transcript_name=HG003_chrY_T0000984;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000984:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9788313	9788508	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000984;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000984;transcript_name=HG003_chrY_T0000984;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000984:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9788509	9788523	.	-	.	source_transcript=ENST00000427622.5;source_transcript_name=FAM197Y3-203;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000427622.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000427622.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000984;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000984;transcript_name=HG003_chrY_T0000984;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000984:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9782712	9788304	1000	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000985;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_G0000324;transcript_name=HG003_chrY_T0000985;gene_name=FAM197Y3;ID=HG003_chrY_T0000985;Name=FAM197Y3
HG003_chrY	CAT	exon	9782712	9782771	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000985;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000985;transcript_name=HG003_chrY_T0000985;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000985:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9782772	9786322	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000985;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000985;transcript_name=HG003_chrY_T0000985;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000985:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9786323	9786481	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000985;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000985;transcript_name=HG003_chrY_T0000985;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000985:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9786482	9787970	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000985;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000985;transcript_name=HG003_chrY_T0000985;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000985:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9787971	9788116	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000985;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000985;transcript_name=HG003_chrY_T0000985;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000985:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9788117	9788202	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000985;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000985;transcript_name=HG003_chrY_T0000985;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000985:2;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9788203	9788304	.	-	.	source_transcript=ENST00000414596.5;source_transcript_name=FAM197Y3-202;source_gene=ENSG00000290607.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290607.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000414596.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000414596.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000985;gene_id=HG003_chrY_G0000324;Parent=HG003_chrY_T0000985;transcript_name=HG003_chrY_T0000985;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000985:3;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9787971	9789963	.	-	.	source_gene_common_name=FAM197Y3;source_gene=ENSG00000230066.7;gene_id=HG003_chrY_G0000325;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y3;gene_sources=liftoff;ID=HG003_chrY_G0000325;Name=FAM197Y3
HG003_chrY	CAT	transcript	9787971	9789963	1000	-	.	source_transcript=ENST00000618346.2;source_transcript_name=FAM197Y3-201;source_gene=ENSG00000230066.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230066.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000618346.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618346.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000986;gene_id=HG003_chrY_G0000325;Parent=HG003_chrY_G0000325;transcript_name=HG003_chrY_T0000986;gene_name=FAM197Y3;ID=HG003_chrY_T0000986;Name=FAM197Y3
HG003_chrY	CAT	exon	9787971	9788116	.	-	.	source_transcript=ENST00000618346.2;source_transcript_name=FAM197Y3-201;source_gene=ENSG00000230066.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230066.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000618346.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618346.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000986;gene_id=HG003_chrY_G0000325;Parent=HG003_chrY_T0000986;transcript_name=HG003_chrY_T0000986;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000986:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9788117	9789652	.	-	.	source_transcript=ENST00000618346.2;source_transcript_name=FAM197Y3-201;source_gene=ENSG00000230066.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230066.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000618346.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618346.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000986;gene_id=HG003_chrY_G0000325;Parent=HG003_chrY_T0000986;transcript_name=HG003_chrY_T0000986;gene_name=FAM197Y3;ID=intron:HG003_chrY_T0000986:0;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9789653	9789963	.	-	.	source_transcript=ENST00000618346.2;source_transcript_name=FAM197Y3-201;source_gene=ENSG00000230066.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230066.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000618346.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000618346.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y3;transcript_id=HG003_chrY_T0000986;gene_id=HG003_chrY_G0000325;Parent=HG003_chrY_T0000986;transcript_name=HG003_chrY_T0000986;gene_name=FAM197Y3;ID=exon:HG003_chrY_T0000986:1;Name=FAM197Y3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9790917	9793729	.	+	.	source_gene_common_name=TSPY9;source_gene=ENSG00000238074.6;gene_id=HG003_chrY_G0000326;gene_biotype=protein_coding;gene_name=TSPY9;gene_sources=liftoff;ID=HG003_chrY_G0000326;Name=TSPY9
HG003_chrY	CAT	transcript	9790917	9793729	100	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_G0000326;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=HG003_chrY_T0000987;Name=TSPY9
HG003_chrY	CAT	exon	9790917	9791466	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=exon:HG003_chrY_T0000987:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9790963	9791466	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000987:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	9790963	9790965	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=start_codon:HG003_chrY_T0000987;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9791467	9792073	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=intron:HG003_chrY_T0000987:0;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9792074	9792151	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=exon:HG003_chrY_T0000987:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9792074	9792151	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000987:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9792152	9792279	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=intron:HG003_chrY_T0000987:1;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9792280	9792391	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=exon:HG003_chrY_T0000987:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9792280	9792391	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000987:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9792392	9792492	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=intron:HG003_chrY_T0000987:2;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9792493	9792638	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=exon:HG003_chrY_T0000987:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9792493	9792638	.	+	2	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000987:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9792639	9792744	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=intron:HG003_chrY_T0000987:3;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9792745	9792826	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=exon:HG003_chrY_T0000987:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9792745	9792826	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000987:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9792827	9793518	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=intron:HG003_chrY_T0000987:4;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9793519	9793729	.	+	.	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=exon:HG003_chrY_T0000987:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	9793519	9793541	.	+	2	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=CDS:HG003_chrY_T0000987:5;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	9793539	9793541	.	+	0	source_transcript=ENST00000440215.5;source_transcript_name=TSPY9-201;source_gene=ENSG00000238074.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000238074.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440215.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440215.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY9;transcript_id=HG003_chrY_T0000987;gene_id=HG003_chrY_G0000326;Parent=HG003_chrY_T0000987;transcript_name=HG003_chrY_T0000987;gene_name=TSPY9;ID=stop_codon:HG003_chrY_T0000987;Name=TSPY9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9807975	9810205	.	-	.	source_gene_common_name=FAM197Y1;source_gene=ENSG00000224336.2;alternative_source_transcripts=ENST00000421178.2,ENST00000421178.2;gene_id=HG003_chrY_G0000327;gene_biotype=unprocessed_pseudogene;gene_name=FAM197Y1;gene_sources=liftoff;ID=HG003_chrY_G0000327;Name=FAM197Y1
HG003_chrY	CAT	transcript	9807975	9810205	1000	-	.	source_transcript=ENST00000421178.2;source_transcript_name=FAM197Y1-201;source_gene=ENSG00000224336.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224336.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421178.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421178.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y1;alternative_source_transcripts=ENST00000421178.2,ENST00000421178.2;transcript_id=HG003_chrY_T0000988;gene_id=HG003_chrY_G0000327;Parent=HG003_chrY_G0000327;transcript_name=HG003_chrY_T0000988;gene_name=FAM197Y1;ID=HG003_chrY_T0000988;Name=FAM197Y1
HG003_chrY	CAT	exon	9807975	9808064	.	-	.	source_transcript=ENST00000421178.2;source_transcript_name=FAM197Y1-201;source_gene=ENSG00000224336.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224336.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421178.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421178.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y1;alternative_source_transcripts=ENST00000421178.2,ENST00000421178.2;transcript_id=HG003_chrY_T0000988;gene_id=HG003_chrY_G0000327;Parent=HG003_chrY_T0000988;transcript_name=HG003_chrY_T0000988;gene_name=FAM197Y1;ID=exon:HG003_chrY_T0000988:0;Name=FAM197Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9808065	9808182	.	-	.	source_transcript=ENST00000421178.2;source_transcript_name=FAM197Y1-201;source_gene=ENSG00000224336.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224336.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421178.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421178.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y1;alternative_source_transcripts=ENST00000421178.2,ENST00000421178.2;transcript_id=HG003_chrY_T0000988;gene_id=HG003_chrY_G0000327;Parent=HG003_chrY_T0000988;transcript_name=HG003_chrY_T0000988;gene_name=FAM197Y1;ID=intron:HG003_chrY_T0000988:0;Name=FAM197Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9808183	9808328	.	-	.	source_transcript=ENST00000421178.2;source_transcript_name=FAM197Y1-201;source_gene=ENSG00000224336.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224336.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421178.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421178.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y1;alternative_source_transcripts=ENST00000421178.2,ENST00000421178.2;transcript_id=HG003_chrY_T0000988;gene_id=HG003_chrY_G0000327;Parent=HG003_chrY_T0000988;transcript_name=HG003_chrY_T0000988;gene_name=FAM197Y1;ID=exon:HG003_chrY_T0000988:1;Name=FAM197Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9808329	9808414	.	-	.	source_transcript=ENST00000421178.2;source_transcript_name=FAM197Y1-201;source_gene=ENSG00000224336.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224336.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421178.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421178.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y1;alternative_source_transcripts=ENST00000421178.2,ENST00000421178.2;transcript_id=HG003_chrY_T0000988;gene_id=HG003_chrY_G0000327;Parent=HG003_chrY_T0000988;transcript_name=HG003_chrY_T0000988;gene_name=FAM197Y1;ID=intron:HG003_chrY_T0000988:1;Name=FAM197Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9808415	9808524	.	-	.	source_transcript=ENST00000421178.2;source_transcript_name=FAM197Y1-201;source_gene=ENSG00000224336.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224336.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421178.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421178.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y1;alternative_source_transcripts=ENST00000421178.2,ENST00000421178.2;transcript_id=HG003_chrY_T0000988;gene_id=HG003_chrY_G0000327;Parent=HG003_chrY_T0000988;transcript_name=HG003_chrY_T0000988;gene_name=FAM197Y1;ID=exon:HG003_chrY_T0000988:2;Name=FAM197Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9808525	9808720	.	-	.	source_transcript=ENST00000421178.2;source_transcript_name=FAM197Y1-201;source_gene=ENSG00000224336.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224336.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421178.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421178.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y1;alternative_source_transcripts=ENST00000421178.2,ENST00000421178.2;transcript_id=HG003_chrY_T0000988;gene_id=HG003_chrY_G0000327;Parent=HG003_chrY_T0000988;transcript_name=HG003_chrY_T0000988;gene_name=FAM197Y1;ID=intron:HG003_chrY_T0000988:2;Name=FAM197Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9808721	9808782	.	-	.	source_transcript=ENST00000421178.2;source_transcript_name=FAM197Y1-201;source_gene=ENSG00000224336.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224336.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421178.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421178.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y1;alternative_source_transcripts=ENST00000421178.2,ENST00000421178.2;transcript_id=HG003_chrY_T0000988;gene_id=HG003_chrY_G0000327;Parent=HG003_chrY_T0000988;transcript_name=HG003_chrY_T0000988;gene_name=FAM197Y1;ID=exon:HG003_chrY_T0000988:3;Name=FAM197Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9808783	9809849	.	-	.	source_transcript=ENST00000421178.2;source_transcript_name=FAM197Y1-201;source_gene=ENSG00000224336.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224336.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421178.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421178.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y1;alternative_source_transcripts=ENST00000421178.2,ENST00000421178.2;transcript_id=HG003_chrY_T0000988;gene_id=HG003_chrY_G0000327;Parent=HG003_chrY_T0000988;transcript_name=HG003_chrY_T0000988;gene_name=FAM197Y1;ID=intron:HG003_chrY_T0000988:3;Name=FAM197Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9809850	9810205	.	-	.	source_transcript=ENST00000421178.2;source_transcript_name=FAM197Y1-201;source_gene=ENSG00000224336.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224336.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421178.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421178.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y1;alternative_source_transcripts=ENST00000421178.2,ENST00000421178.2;transcript_id=HG003_chrY_T0000988;gene_id=HG003_chrY_G0000327;Parent=HG003_chrY_T0000988;transcript_name=HG003_chrY_T0000988;gene_name=FAM197Y1;ID=exon:HG003_chrY_T0000988:4;Name=FAM197Y1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9811169	9813741	.	+	.	source_gene_common_name=TSPY15P;source_gene=ENSG00000236786.1;gene_id=HG003_chrY_G0000328;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY15P;gene_sources=liftoff;ID=HG003_chrY_G0000328;Name=TSPY15P
HG003_chrY	CAT	transcript	9811169	9813741	1000	+	.	source_transcript=ENST00000457163.1;source_transcript_name=TSPY15P-201;source_gene=ENSG00000236786.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236786.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000457163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457163.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY15P;transcript_id=HG003_chrY_T0000989;gene_id=HG003_chrY_G0000328;Parent=HG003_chrY_G0000328;transcript_name=HG003_chrY_T0000989;gene_name=TSPY15P;ID=HG003_chrY_T0000989;Name=TSPY15P
HG003_chrY	CAT	exon	9811169	9811640	.	+	.	source_transcript=ENST00000457163.1;source_transcript_name=TSPY15P-201;source_gene=ENSG00000236786.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236786.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000457163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY15P;transcript_id=HG003_chrY_T0000989;gene_id=HG003_chrY_G0000328;Parent=HG003_chrY_T0000989;transcript_name=HG003_chrY_T0000989;gene_name=TSPY15P;ID=exon:HG003_chrY_T0000989:0;Name=TSPY15P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9811641	9812247	.	+	.	source_transcript=ENST00000457163.1;source_transcript_name=TSPY15P-201;source_gene=ENSG00000236786.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236786.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000457163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY15P;transcript_id=HG003_chrY_T0000989;gene_id=HG003_chrY_G0000328;Parent=HG003_chrY_T0000989;transcript_name=HG003_chrY_T0000989;gene_name=TSPY15P;ID=intron:HG003_chrY_T0000989:0;Name=TSPY15P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9812248	9812325	.	+	.	source_transcript=ENST00000457163.1;source_transcript_name=TSPY15P-201;source_gene=ENSG00000236786.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236786.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000457163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY15P;transcript_id=HG003_chrY_T0000989;gene_id=HG003_chrY_G0000328;Parent=HG003_chrY_T0000989;transcript_name=HG003_chrY_T0000989;gene_name=TSPY15P;ID=exon:HG003_chrY_T0000989:1;Name=TSPY15P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9812326	9812453	.	+	.	source_transcript=ENST00000457163.1;source_transcript_name=TSPY15P-201;source_gene=ENSG00000236786.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236786.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000457163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY15P;transcript_id=HG003_chrY_T0000989;gene_id=HG003_chrY_G0000328;Parent=HG003_chrY_T0000989;transcript_name=HG003_chrY_T0000989;gene_name=TSPY15P;ID=intron:HG003_chrY_T0000989:1;Name=TSPY15P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9812454	9812565	.	+	.	source_transcript=ENST00000457163.1;source_transcript_name=TSPY15P-201;source_gene=ENSG00000236786.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236786.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000457163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY15P;transcript_id=HG003_chrY_T0000989;gene_id=HG003_chrY_G0000328;Parent=HG003_chrY_T0000989;transcript_name=HG003_chrY_T0000989;gene_name=TSPY15P;ID=exon:HG003_chrY_T0000989:2;Name=TSPY15P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9812566	9812666	.	+	.	source_transcript=ENST00000457163.1;source_transcript_name=TSPY15P-201;source_gene=ENSG00000236786.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236786.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000457163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY15P;transcript_id=HG003_chrY_T0000989;gene_id=HG003_chrY_G0000328;Parent=HG003_chrY_T0000989;transcript_name=HG003_chrY_T0000989;gene_name=TSPY15P;ID=intron:HG003_chrY_T0000989:2;Name=TSPY15P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9812667	9812811	.	+	.	source_transcript=ENST00000457163.1;source_transcript_name=TSPY15P-201;source_gene=ENSG00000236786.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236786.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000457163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY15P;transcript_id=HG003_chrY_T0000989;gene_id=HG003_chrY_G0000328;Parent=HG003_chrY_T0000989;transcript_name=HG003_chrY_T0000989;gene_name=TSPY15P;ID=exon:HG003_chrY_T0000989:3;Name=TSPY15P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9812812	9812906	.	+	.	source_transcript=ENST00000457163.1;source_transcript_name=TSPY15P-201;source_gene=ENSG00000236786.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236786.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000457163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY15P;transcript_id=HG003_chrY_T0000989;gene_id=HG003_chrY_G0000328;Parent=HG003_chrY_T0000989;transcript_name=HG003_chrY_T0000989;gene_name=TSPY15P;ID=intron:HG003_chrY_T0000989:3;Name=TSPY15P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9812907	9812999	.	+	.	source_transcript=ENST00000457163.1;source_transcript_name=TSPY15P-201;source_gene=ENSG00000236786.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236786.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000457163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY15P;transcript_id=HG003_chrY_T0000989;gene_id=HG003_chrY_G0000328;Parent=HG003_chrY_T0000989;transcript_name=HG003_chrY_T0000989;gene_name=TSPY15P;ID=exon:HG003_chrY_T0000989:4;Name=TSPY15P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9813000	9813719	.	+	.	source_transcript=ENST00000457163.1;source_transcript_name=TSPY15P-201;source_gene=ENSG00000236786.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236786.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000457163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY15P;transcript_id=HG003_chrY_T0000989;gene_id=HG003_chrY_G0000328;Parent=HG003_chrY_T0000989;transcript_name=HG003_chrY_T0000989;gene_name=TSPY15P;ID=intron:HG003_chrY_T0000989:4;Name=TSPY15P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9813720	9813741	.	+	.	source_transcript=ENST00000457163.1;source_transcript_name=TSPY15P-201;source_gene=ENSG00000236786.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236786.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000457163.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457163.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY15P;transcript_id=HG003_chrY_T0000989;gene_id=HG003_chrY_G0000328;Parent=HG003_chrY_T0000989;transcript_name=HG003_chrY_T0000989;gene_name=TSPY15P;ID=exon:HG003_chrY_T0000989:5;Name=TSPY15P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9811173	9813940	.	+	.	source_gene_common_name=ENSG00000308528;source_gene=ENSG00000308528.1;gene_id=HG003_chrY_G0000329;gene_biotype=lncRNA;gene_name=ENSG00000308528;gene_sources=liftoff;ID=HG003_chrY_G0000329;Name=ENSG00000308528
HG003_chrY	CAT	transcript	9811173	9813940	1000	+	.	source_transcript=ENST00000834807.1;source_transcript_name=ENST00000834807;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834807.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000990;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_G0000329;transcript_name=HG003_chrY_T0000990;gene_name=ENSG00000308528;ID=HG003_chrY_T0000990;Name=ENSG00000308528
HG003_chrY	CAT	exon	9811173	9811640	.	+	.	source_transcript=ENST00000834807.1;source_transcript_name=ENST00000834807;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000990;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000990;transcript_name=HG003_chrY_T0000990;gene_name=ENSG00000308528;ID=exon:HG003_chrY_T0000990:0;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9811641	9812247	.	+	.	source_transcript=ENST00000834807.1;source_transcript_name=ENST00000834807;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000990;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000990;transcript_name=HG003_chrY_T0000990;gene_name=ENSG00000308528;ID=intron:HG003_chrY_T0000990:0;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9812248	9812325	.	+	.	source_transcript=ENST00000834807.1;source_transcript_name=ENST00000834807;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000990;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000990;transcript_name=HG003_chrY_T0000990;gene_name=ENSG00000308528;ID=exon:HG003_chrY_T0000990:1;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9812326	9812453	.	+	.	source_transcript=ENST00000834807.1;source_transcript_name=ENST00000834807;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000990;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000990;transcript_name=HG003_chrY_T0000990;gene_name=ENSG00000308528;ID=intron:HG003_chrY_T0000990:1;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9812454	9812565	.	+	.	source_transcript=ENST00000834807.1;source_transcript_name=ENST00000834807;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000990;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000990;transcript_name=HG003_chrY_T0000990;gene_name=ENSG00000308528;ID=exon:HG003_chrY_T0000990:2;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9812566	9812666	.	+	.	source_transcript=ENST00000834807.1;source_transcript_name=ENST00000834807;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000990;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000990;transcript_name=HG003_chrY_T0000990;gene_name=ENSG00000308528;ID=intron:HG003_chrY_T0000990:2;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9812667	9812811	.	+	.	source_transcript=ENST00000834807.1;source_transcript_name=ENST00000834807;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000990;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000990;transcript_name=HG003_chrY_T0000990;gene_name=ENSG00000308528;ID=exon:HG003_chrY_T0000990:3;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9812812	9812917	.	+	.	source_transcript=ENST00000834807.1;source_transcript_name=ENST00000834807;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000990;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000990;transcript_name=HG003_chrY_T0000990;gene_name=ENSG00000308528;ID=intron:HG003_chrY_T0000990:3;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9812918	9812999	.	+	.	source_transcript=ENST00000834807.1;source_transcript_name=ENST00000834807;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000990;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000990;transcript_name=HG003_chrY_T0000990;gene_name=ENSG00000308528;ID=exon:HG003_chrY_T0000990:4;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9813000	9813695	.	+	.	source_transcript=ENST00000834807.1;source_transcript_name=ENST00000834807;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000990;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000990;transcript_name=HG003_chrY_T0000990;gene_name=ENSG00000308528;ID=intron:HG003_chrY_T0000990:4;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9813696	9813940	.	+	.	source_transcript=ENST00000834807.1;source_transcript_name=ENST00000834807;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000990;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000990;transcript_name=HG003_chrY_T0000990;gene_name=ENSG00000308528;ID=exon:HG003_chrY_T0000990:5;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9812926	9813933	1000	+	.	source_transcript=ENST00000834808.1;source_transcript_name=ENST00000834808;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834808.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000991;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_G0000329;transcript_name=HG003_chrY_T0000991;gene_name=ENSG00000308528;ID=HG003_chrY_T0000991;Name=ENSG00000308528
HG003_chrY	CAT	exon	9812926	9812999	.	+	.	source_transcript=ENST00000834808.1;source_transcript_name=ENST00000834808;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834808.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000991;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000991;transcript_name=HG003_chrY_T0000991;gene_name=ENSG00000308528;ID=exon:HG003_chrY_T0000991:0;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9813000	9813695	.	+	.	source_transcript=ENST00000834808.1;source_transcript_name=ENST00000834808;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834808.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000991;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000991;transcript_name=HG003_chrY_T0000991;gene_name=ENSG00000308528;ID=intron:HG003_chrY_T0000991:0;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9813696	9813933	.	+	.	source_transcript=ENST00000834808.1;source_transcript_name=ENST00000834808;source_gene=ENSG00000308528.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308528.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000834808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000834808.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308528;transcript_id=HG003_chrY_T0000991;gene_id=HG003_chrY_G0000329;Parent=HG003_chrY_T0000991;transcript_name=HG003_chrY_T0000991;gene_name=ENSG00000308528;ID=exon:HG003_chrY_T0000991:1;Name=ENSG00000308528;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9873019	9895409	.	-	.	source_gene_common_name=ENSG00000309329;source_gene=ENSG00000309329.1;gene_id=HG003_chrY_G0000330;gene_biotype=lncRNA;gene_name=ENSG00000309329;gene_sources=liftoff;ID=HG003_chrY_G0000330;Name=ENSG00000309329
HG003_chrY	CAT	transcript	9873019	9886379	1000	-	.	source_transcript=ENST00000840321.1;source_transcript_name=ENST00000840321;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840321.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840321.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000992;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_G0000330;transcript_name=HG003_chrY_T0000992;gene_name=ENSG00000309329;ID=HG003_chrY_T0000992;Name=ENSG00000309329
HG003_chrY	CAT	exon	9873019	9873934	.	-	.	source_transcript=ENST00000840321.1;source_transcript_name=ENST00000840321;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840321.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840321.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000992;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000992;transcript_name=HG003_chrY_T0000992;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000992:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9873935	9877844	.	-	.	source_transcript=ENST00000840321.1;source_transcript_name=ENST00000840321;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840321.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840321.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000992;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000992;transcript_name=HG003_chrY_T0000992;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000992:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9877845	9877946	.	-	.	source_transcript=ENST00000840321.1;source_transcript_name=ENST00000840321;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840321.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840321.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000992;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000992;transcript_name=HG003_chrY_T0000992;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000992:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9877947	9878152	.	-	.	source_transcript=ENST00000840321.1;source_transcript_name=ENST00000840321;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840321.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840321.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000992;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000992;transcript_name=HG003_chrY_T0000992;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000992:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9878153	9878256	.	-	.	source_transcript=ENST00000840321.1;source_transcript_name=ENST00000840321;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840321.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840321.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000992;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000992;transcript_name=HG003_chrY_T0000992;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000992:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9878257	9883689	.	-	.	source_transcript=ENST00000840321.1;source_transcript_name=ENST00000840321;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840321.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840321.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000992;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000992;transcript_name=HG003_chrY_T0000992;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000992:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9883690	9883779	.	-	.	source_transcript=ENST00000840321.1;source_transcript_name=ENST00000840321;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840321.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840321.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000992;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000992;transcript_name=HG003_chrY_T0000992;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000992:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9883780	9886217	.	-	.	source_transcript=ENST00000840321.1;source_transcript_name=ENST00000840321;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840321.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840321.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000992;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000992;transcript_name=HG003_chrY_T0000992;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000992:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9886218	9886379	.	-	.	source_transcript=ENST00000840321.1;source_transcript_name=ENST00000840321;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840321.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840321.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000992;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000992;transcript_name=HG003_chrY_T0000992;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000992:4;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9873021	9886379	1000	-	.	source_transcript=ENST00000840322.1;source_transcript_name=ENST00000840322;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840322.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000993;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_G0000330;transcript_name=HG003_chrY_T0000993;gene_name=ENSG00000309329;ID=HG003_chrY_T0000993;Name=ENSG00000309329
HG003_chrY	CAT	exon	9873021	9873934	.	-	.	source_transcript=ENST00000840322.1;source_transcript_name=ENST00000840322;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000993;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000993;transcript_name=HG003_chrY_T0000993;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000993:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9873935	9875483	.	-	.	source_transcript=ENST00000840322.1;source_transcript_name=ENST00000840322;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000993;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000993;transcript_name=HG003_chrY_T0000993;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000993:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9875484	9875597	.	-	.	source_transcript=ENST00000840322.1;source_transcript_name=ENST00000840322;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000993;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000993;transcript_name=HG003_chrY_T0000993;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000993:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9875598	9877844	.	-	.	source_transcript=ENST00000840322.1;source_transcript_name=ENST00000840322;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000993;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000993;transcript_name=HG003_chrY_T0000993;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000993:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9877845	9877946	.	-	.	source_transcript=ENST00000840322.1;source_transcript_name=ENST00000840322;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000993;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000993;transcript_name=HG003_chrY_T0000993;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000993:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9877947	9878152	.	-	.	source_transcript=ENST00000840322.1;source_transcript_name=ENST00000840322;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000993;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000993;transcript_name=HG003_chrY_T0000993;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000993:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9878153	9878256	.	-	.	source_transcript=ENST00000840322.1;source_transcript_name=ENST00000840322;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000993;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000993;transcript_name=HG003_chrY_T0000993;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000993:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9878257	9883689	.	-	.	source_transcript=ENST00000840322.1;source_transcript_name=ENST00000840322;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000993;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000993;transcript_name=HG003_chrY_T0000993;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000993:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9883690	9883779	.	-	.	source_transcript=ENST00000840322.1;source_transcript_name=ENST00000840322;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000993;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000993;transcript_name=HG003_chrY_T0000993;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000993:4;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9883780	9886217	.	-	.	source_transcript=ENST00000840322.1;source_transcript_name=ENST00000840322;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000993;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000993;transcript_name=HG003_chrY_T0000993;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000993:4;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9886218	9886379	.	-	.	source_transcript=ENST00000840322.1;source_transcript_name=ENST00000840322;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840322.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840322.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000993;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000993;transcript_name=HG003_chrY_T0000993;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000993:5;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9873022	9886379	1000	-	.	source_transcript=ENST00000840323.1;source_transcript_name=ENST00000840323;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840323.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840323.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000994;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_G0000330;transcript_name=HG003_chrY_T0000994;gene_name=ENSG00000309329;ID=HG003_chrY_T0000994;Name=ENSG00000309329
HG003_chrY	CAT	exon	9873022	9873934	.	-	.	source_transcript=ENST00000840323.1;source_transcript_name=ENST00000840323;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840323.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840323.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000994;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000994;transcript_name=HG003_chrY_T0000994;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000994:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9873935	9877844	.	-	.	source_transcript=ENST00000840323.1;source_transcript_name=ENST00000840323;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840323.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840323.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000994;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000994;transcript_name=HG003_chrY_T0000994;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000994:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9877845	9877946	.	-	.	source_transcript=ENST00000840323.1;source_transcript_name=ENST00000840323;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840323.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840323.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000994;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000994;transcript_name=HG003_chrY_T0000994;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000994:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9877947	9883689	.	-	.	source_transcript=ENST00000840323.1;source_transcript_name=ENST00000840323;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840323.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840323.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000994;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000994;transcript_name=HG003_chrY_T0000994;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000994:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9883690	9883779	.	-	.	source_transcript=ENST00000840323.1;source_transcript_name=ENST00000840323;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840323.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840323.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000994;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000994;transcript_name=HG003_chrY_T0000994;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000994:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9883780	9886217	.	-	.	source_transcript=ENST00000840323.1;source_transcript_name=ENST00000840323;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840323.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840323.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000994;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000994;transcript_name=HG003_chrY_T0000994;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000994:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9886218	9886379	.	-	.	source_transcript=ENST00000840323.1;source_transcript_name=ENST00000840323;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840323.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840323.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000994;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000994;transcript_name=HG003_chrY_T0000994;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000994:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9873354	9886379	1000	-	.	source_transcript=ENST00000840324.1;source_transcript_name=ENST00000840324;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840324.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840324.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000995;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_G0000330;transcript_name=HG003_chrY_T0000995;gene_name=ENSG00000309329;ID=HG003_chrY_T0000995;Name=ENSG00000309329
HG003_chrY	CAT	exon	9873354	9873934	.	-	.	source_transcript=ENST00000840324.1;source_transcript_name=ENST00000840324;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840324.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840324.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000995;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000995;transcript_name=HG003_chrY_T0000995;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000995:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9873935	9875483	.	-	.	source_transcript=ENST00000840324.1;source_transcript_name=ENST00000840324;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840324.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840324.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000995;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000995;transcript_name=HG003_chrY_T0000995;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000995:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9875484	9875597	.	-	.	source_transcript=ENST00000840324.1;source_transcript_name=ENST00000840324;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840324.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840324.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000995;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000995;transcript_name=HG003_chrY_T0000995;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000995:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9875598	9877844	.	-	.	source_transcript=ENST00000840324.1;source_transcript_name=ENST00000840324;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840324.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840324.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000995;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000995;transcript_name=HG003_chrY_T0000995;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000995:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9877845	9877946	.	-	.	source_transcript=ENST00000840324.1;source_transcript_name=ENST00000840324;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840324.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840324.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000995;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000995;transcript_name=HG003_chrY_T0000995;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000995:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9877947	9883689	.	-	.	source_transcript=ENST00000840324.1;source_transcript_name=ENST00000840324;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840324.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840324.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000995;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000995;transcript_name=HG003_chrY_T0000995;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000995:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9883690	9883779	.	-	.	source_transcript=ENST00000840324.1;source_transcript_name=ENST00000840324;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840324.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840324.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000995;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000995;transcript_name=HG003_chrY_T0000995;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000995:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9883780	9886217	.	-	.	source_transcript=ENST00000840324.1;source_transcript_name=ENST00000840324;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840324.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840324.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000995;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000995;transcript_name=HG003_chrY_T0000995;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000995:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9886218	9886379	.	-	.	source_transcript=ENST00000840324.1;source_transcript_name=ENST00000840324;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840324.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840324.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000995;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000995;transcript_name=HG003_chrY_T0000995;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000995:4;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9873354	9886363	1000	-	.	source_transcript=ENST00000840325.1;source_transcript_name=ENST00000840325;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840325.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840325.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000996;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_G0000330;transcript_name=HG003_chrY_T0000996;gene_name=ENSG00000309329;ID=HG003_chrY_T0000996;Name=ENSG00000309329
HG003_chrY	CAT	exon	9873354	9873934	.	-	.	source_transcript=ENST00000840325.1;source_transcript_name=ENST00000840325;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840325.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840325.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000996;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000996;transcript_name=HG003_chrY_T0000996;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000996:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9873935	9875483	.	-	.	source_transcript=ENST00000840325.1;source_transcript_name=ENST00000840325;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840325.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840325.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000996;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000996;transcript_name=HG003_chrY_T0000996;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000996:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9875484	9875597	.	-	.	source_transcript=ENST00000840325.1;source_transcript_name=ENST00000840325;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840325.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840325.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000996;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000996;transcript_name=HG003_chrY_T0000996;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000996:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9875598	9877844	.	-	.	source_transcript=ENST00000840325.1;source_transcript_name=ENST00000840325;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840325.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840325.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000996;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000996;transcript_name=HG003_chrY_T0000996;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000996:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9877845	9877946	.	-	.	source_transcript=ENST00000840325.1;source_transcript_name=ENST00000840325;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840325.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840325.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000996;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000996;transcript_name=HG003_chrY_T0000996;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000996:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9877947	9878152	.	-	.	source_transcript=ENST00000840325.1;source_transcript_name=ENST00000840325;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840325.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840325.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000996;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000996;transcript_name=HG003_chrY_T0000996;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000996:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9878153	9878265	.	-	.	source_transcript=ENST00000840325.1;source_transcript_name=ENST00000840325;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840325.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840325.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000996;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000996;transcript_name=HG003_chrY_T0000996;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000996:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9878266	9883689	.	-	.	source_transcript=ENST00000840325.1;source_transcript_name=ENST00000840325;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840325.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840325.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000996;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000996;transcript_name=HG003_chrY_T0000996;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000996:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9883690	9883779	.	-	.	source_transcript=ENST00000840325.1;source_transcript_name=ENST00000840325;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840325.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840325.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000996;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000996;transcript_name=HG003_chrY_T0000996;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000996:4;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9883780	9886217	.	-	.	source_transcript=ENST00000840325.1;source_transcript_name=ENST00000840325;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840325.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840325.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000996;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000996;transcript_name=HG003_chrY_T0000996;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000996:4;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9886218	9886363	.	-	.	source_transcript=ENST00000840325.1;source_transcript_name=ENST00000840325;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840325.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840325.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000996;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000996;transcript_name=HG003_chrY_T0000996;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000996:5;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9873361	9886368	1000	-	.	source_transcript=ENST00000840326.1;source_transcript_name=ENST00000840326;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840326.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000997;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_G0000330;transcript_name=HG003_chrY_T0000997;gene_name=ENSG00000309329;ID=HG003_chrY_T0000997;Name=ENSG00000309329
HG003_chrY	CAT	exon	9873361	9873934	.	-	.	source_transcript=ENST00000840326.1;source_transcript_name=ENST00000840326;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840326.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000997;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000997;transcript_name=HG003_chrY_T0000997;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000997:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9873935	9883689	.	-	.	source_transcript=ENST00000840326.1;source_transcript_name=ENST00000840326;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840326.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000997;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000997;transcript_name=HG003_chrY_T0000997;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000997:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9883690	9883779	.	-	.	source_transcript=ENST00000840326.1;source_transcript_name=ENST00000840326;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840326.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000997;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000997;transcript_name=HG003_chrY_T0000997;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000997:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9883780	9886217	.	-	.	source_transcript=ENST00000840326.1;source_transcript_name=ENST00000840326;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840326.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000997;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000997;transcript_name=HG003_chrY_T0000997;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000997:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9886218	9886368	.	-	.	source_transcript=ENST00000840326.1;source_transcript_name=ENST00000840326;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840326.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000997;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000997;transcript_name=HG003_chrY_T0000997;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000997:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9873368	9886373	1000	-	.	source_transcript=ENST00000840327.1;source_transcript_name=ENST00000840327;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840327.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000998;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_G0000330;transcript_name=HG003_chrY_T0000998;gene_name=ENSG00000309329;ID=HG003_chrY_T0000998;Name=ENSG00000309329
HG003_chrY	CAT	exon	9873368	9873934	.	-	.	source_transcript=ENST00000840327.1;source_transcript_name=ENST00000840327;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000998;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000998;transcript_name=HG003_chrY_T0000998;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000998:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9873935	9877844	.	-	.	source_transcript=ENST00000840327.1;source_transcript_name=ENST00000840327;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000998;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000998;transcript_name=HG003_chrY_T0000998;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000998:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9877845	9877946	.	-	.	source_transcript=ENST00000840327.1;source_transcript_name=ENST00000840327;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000998;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000998;transcript_name=HG003_chrY_T0000998;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000998:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9877947	9878152	.	-	.	source_transcript=ENST00000840327.1;source_transcript_name=ENST00000840327;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000998;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000998;transcript_name=HG003_chrY_T0000998;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000998:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9878153	9878265	.	-	.	source_transcript=ENST00000840327.1;source_transcript_name=ENST00000840327;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000998;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000998;transcript_name=HG003_chrY_T0000998;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000998:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9878266	9883689	.	-	.	source_transcript=ENST00000840327.1;source_transcript_name=ENST00000840327;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000998;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000998;transcript_name=HG003_chrY_T0000998;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000998:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9883690	9883779	.	-	.	source_transcript=ENST00000840327.1;source_transcript_name=ENST00000840327;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000998;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000998;transcript_name=HG003_chrY_T0000998;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000998:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9883780	9886217	.	-	.	source_transcript=ENST00000840327.1;source_transcript_name=ENST00000840327;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000998;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000998;transcript_name=HG003_chrY_T0000998;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000998:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9886218	9886373	.	-	.	source_transcript=ENST00000840327.1;source_transcript_name=ENST00000840327;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000998;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000998;transcript_name=HG003_chrY_T0000998;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000998:4;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9873616	9895409	1000	-	.	source_transcript=ENST00000840320.1;source_transcript_name=ENST00000840320;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840320.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000999;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_G0000330;transcript_name=HG003_chrY_T0000999;gene_name=ENSG00000309329;ID=HG003_chrY_T0000999;Name=ENSG00000309329
HG003_chrY	CAT	exon	9873616	9873934	.	-	.	source_transcript=ENST00000840320.1;source_transcript_name=ENST00000840320;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840320.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000999;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000999;transcript_name=HG003_chrY_T0000999;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000999:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9873935	9875483	.	-	.	source_transcript=ENST00000840320.1;source_transcript_name=ENST00000840320;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840320.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000999;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000999;transcript_name=HG003_chrY_T0000999;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000999:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9875484	9875597	.	-	.	source_transcript=ENST00000840320.1;source_transcript_name=ENST00000840320;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840320.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000999;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000999;transcript_name=HG003_chrY_T0000999;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000999:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9875598	9877844	.	-	.	source_transcript=ENST00000840320.1;source_transcript_name=ENST00000840320;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840320.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000999;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000999;transcript_name=HG003_chrY_T0000999;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000999:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9877845	9877946	.	-	.	source_transcript=ENST00000840320.1;source_transcript_name=ENST00000840320;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840320.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000999;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000999;transcript_name=HG003_chrY_T0000999;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000999:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9877947	9878152	.	-	.	source_transcript=ENST00000840320.1;source_transcript_name=ENST00000840320;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840320.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000999;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000999;transcript_name=HG003_chrY_T0000999;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000999:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9878153	9878265	.	-	.	source_transcript=ENST00000840320.1;source_transcript_name=ENST00000840320;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840320.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000999;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000999;transcript_name=HG003_chrY_T0000999;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000999:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9878266	9883689	.	-	.	source_transcript=ENST00000840320.1;source_transcript_name=ENST00000840320;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840320.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000999;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000999;transcript_name=HG003_chrY_T0000999;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000999:3;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9883690	9883779	.	-	.	source_transcript=ENST00000840320.1;source_transcript_name=ENST00000840320;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840320.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000999;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000999;transcript_name=HG003_chrY_T0000999;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000999:4;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9883780	9895371	.	-	.	source_transcript=ENST00000840320.1;source_transcript_name=ENST00000840320;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840320.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000999;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000999;transcript_name=HG003_chrY_T0000999;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0000999:4;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9895372	9895409	.	-	.	source_transcript=ENST00000840320.1;source_transcript_name=ENST00000840320;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840320.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0000999;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0000999;transcript_name=HG003_chrY_T0000999;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0000999:5;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9882943	9886363	1000	-	.	source_transcript=ENST00000840328.1;source_transcript_name=ENST00000840328;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840328.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0001001;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_G0000330;transcript_name=HG003_chrY_T0001001;gene_name=ENSG00000309329;ID=HG003_chrY_T0001001;Name=ENSG00000309329
HG003_chrY	CAT	exon	9882943	9883459	.	-	.	source_transcript=ENST00000840328.1;source_transcript_name=ENST00000840328;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0001001;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0001001;transcript_name=HG003_chrY_T0001001;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0001001:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9883460	9883689	.	-	.	source_transcript=ENST00000840328.1;source_transcript_name=ENST00000840328;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0001001;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0001001;transcript_name=HG003_chrY_T0001001;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0001001:0;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9883690	9883779	.	-	.	source_transcript=ENST00000840328.1;source_transcript_name=ENST00000840328;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0001001;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0001001;transcript_name=HG003_chrY_T0001001;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0001001:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9883780	9886217	.	-	.	source_transcript=ENST00000840328.1;source_transcript_name=ENST00000840328;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0001001;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0001001;transcript_name=HG003_chrY_T0001001;gene_name=ENSG00000309329;ID=intron:HG003_chrY_T0001001:1;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9886218	9886363	.	-	.	source_transcript=ENST00000840328.1;source_transcript_name=ENST00000840328;source_gene=ENSG00000309329.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309329.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309329;transcript_id=HG003_chrY_T0001001;gene_id=HG003_chrY_G0000330;Parent=HG003_chrY_T0001001;transcript_name=HG003_chrY_T0001001;gene_name=ENSG00000309329;ID=exon:HG003_chrY_T0001001:2;Name=ENSG00000309329;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9873634	9884339	.	-	.	source_gene_common_name=RBMY3AP;source_gene=ENSG00000231436.1;gene_id=HG003_chrY_G0000331;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RBMY3AP;gene_sources=liftoff;ID=HG003_chrY_G0000331;Name=RBMY3AP
HG003_chrY	CAT	transcript	9873634	9884339	1000	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_G0000331;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=HG003_chrY_T0001000;Name=RBMY3AP
HG003_chrY	CAT	exon	9873634	9873934	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=exon:HG003_chrY_T0001000:0;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9873935	9874346	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=intron:HG003_chrY_T0001000:0;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9874347	9874430	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=exon:HG003_chrY_T0001000:1;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9874431	9874515	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=intron:HG003_chrY_T0001000:1;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9874516	9874626	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=exon:HG003_chrY_T0001000:2;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9874627	9875483	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=intron:HG003_chrY_T0001000:2;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9875484	9875597	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=exon:HG003_chrY_T0001000:3;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9875598	9878152	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=intron:HG003_chrY_T0001000:3;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9878153	9878299	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=exon:HG003_chrY_T0001000:4;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9878300	9880215	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=intron:HG003_chrY_T0001000:4;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9880216	9880390	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=exon:HG003_chrY_T0001000:5;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9880391	9883689	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=intron:HG003_chrY_T0001000:5;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9883690	9883793	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=exon:HG003_chrY_T0001000:6;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9883794	9884230	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=intron:HG003_chrY_T0001000:6;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9884231	9884339	.	-	.	source_transcript=ENST00000449381.1;source_transcript_name=RBMY3AP-201;source_gene=ENSG00000231436.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000231436.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000449381.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449381.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY3AP;transcript_id=HG003_chrY_T0001000;gene_id=HG003_chrY_G0000331;Parent=HG003_chrY_T0001000;transcript_name=HG003_chrY_T0001000;gene_name=RBMY3AP;ID=exon:HG003_chrY_T0001000:7;Name=RBMY3AP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9887246	9889415	.	+	.	source_gene_common_name=TSPY25P;source_gene=ENSG00000234110.1;alternative_source_transcripts=ENST00000429463.1,ENST00000429463.1;gene_id=HG003_chrY_G0000332;gene_biotype=unprocessed_pseudogene;gene_name=TSPY25P;gene_sources=liftoff;ID=HG003_chrY_G0000332;Name=TSPY25P
HG003_chrY	CAT	transcript	9887246	9889415	1000	+	.	source_transcript=ENST00000429463.1;source_transcript_name=TSPY25P-201;source_gene=ENSG00000234110.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234110.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429463.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY25P;alternative_source_transcripts=ENST00000429463.1,ENST00000429463.1;transcript_id=HG003_chrY_T0001002;gene_id=HG003_chrY_G0000332;Parent=HG003_chrY_G0000332;transcript_name=HG003_chrY_T0001002;gene_name=TSPY25P;ID=HG003_chrY_T0001002;Name=TSPY25P
HG003_chrY	CAT	exon	9887246	9887608	.	+	.	source_transcript=ENST00000429463.1;source_transcript_name=TSPY25P-201;source_gene=ENSG00000234110.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234110.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY25P;alternative_source_transcripts=ENST00000429463.1,ENST00000429463.1;transcript_id=HG003_chrY_T0001002;gene_id=HG003_chrY_G0000332;Parent=HG003_chrY_T0001002;transcript_name=HG003_chrY_T0001002;gene_name=TSPY25P;ID=exon:HG003_chrY_T0001002:0;Name=TSPY25P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9887609	9888632	.	+	.	source_transcript=ENST00000429463.1;source_transcript_name=TSPY25P-201;source_gene=ENSG00000234110.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234110.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY25P;alternative_source_transcripts=ENST00000429463.1,ENST00000429463.1;transcript_id=HG003_chrY_T0001002;gene_id=HG003_chrY_G0000332;Parent=HG003_chrY_T0001002;transcript_name=HG003_chrY_T0001002;gene_name=TSPY25P;ID=intron:HG003_chrY_T0001002:0;Name=TSPY25P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9888633	9888719	.	+	.	source_transcript=ENST00000429463.1;source_transcript_name=TSPY25P-201;source_gene=ENSG00000234110.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234110.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY25P;alternative_source_transcripts=ENST00000429463.1,ENST00000429463.1;transcript_id=HG003_chrY_T0001002;gene_id=HG003_chrY_G0000332;Parent=HG003_chrY_T0001002;transcript_name=HG003_chrY_T0001002;gene_name=TSPY25P;ID=exon:HG003_chrY_T0001002:1;Name=TSPY25P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9888720	9888924	.	+	.	source_transcript=ENST00000429463.1;source_transcript_name=TSPY25P-201;source_gene=ENSG00000234110.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234110.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY25P;alternative_source_transcripts=ENST00000429463.1,ENST00000429463.1;transcript_id=HG003_chrY_T0001002;gene_id=HG003_chrY_G0000332;Parent=HG003_chrY_T0001002;transcript_name=HG003_chrY_T0001002;gene_name=TSPY25P;ID=intron:HG003_chrY_T0001002:1;Name=TSPY25P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9888925	9889037	.	+	.	source_transcript=ENST00000429463.1;source_transcript_name=TSPY25P-201;source_gene=ENSG00000234110.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234110.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY25P;alternative_source_transcripts=ENST00000429463.1,ENST00000429463.1;transcript_id=HG003_chrY_T0001002;gene_id=HG003_chrY_G0000332;Parent=HG003_chrY_T0001002;transcript_name=HG003_chrY_T0001002;gene_name=TSPY25P;ID=exon:HG003_chrY_T0001002:2;Name=TSPY25P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9889038	9889123	.	+	.	source_transcript=ENST00000429463.1;source_transcript_name=TSPY25P-201;source_gene=ENSG00000234110.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234110.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY25P;alternative_source_transcripts=ENST00000429463.1,ENST00000429463.1;transcript_id=HG003_chrY_T0001002;gene_id=HG003_chrY_G0000332;Parent=HG003_chrY_T0001002;transcript_name=HG003_chrY_T0001002;gene_name=TSPY25P;ID=intron:HG003_chrY_T0001002:2;Name=TSPY25P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9889124	9889264	.	+	.	source_transcript=ENST00000429463.1;source_transcript_name=TSPY25P-201;source_gene=ENSG00000234110.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234110.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY25P;alternative_source_transcripts=ENST00000429463.1,ENST00000429463.1;transcript_id=HG003_chrY_T0001002;gene_id=HG003_chrY_G0000332;Parent=HG003_chrY_T0001002;transcript_name=HG003_chrY_T0001002;gene_name=TSPY25P;ID=exon:HG003_chrY_T0001002:3;Name=TSPY25P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9889265	9889374	.	+	.	source_transcript=ENST00000429463.1;source_transcript_name=TSPY25P-201;source_gene=ENSG00000234110.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234110.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY25P;alternative_source_transcripts=ENST00000429463.1,ENST00000429463.1;transcript_id=HG003_chrY_T0001002;gene_id=HG003_chrY_G0000332;Parent=HG003_chrY_T0001002;transcript_name=HG003_chrY_T0001002;gene_name=TSPY25P;ID=intron:HG003_chrY_T0001002:3;Name=TSPY25P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9889375	9889415	.	+	.	source_transcript=ENST00000429463.1;source_transcript_name=TSPY25P-201;source_gene=ENSG00000234110.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234110.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY25P;alternative_source_transcripts=ENST00000429463.1,ENST00000429463.1;transcript_id=HG003_chrY_T0001002;gene_id=HG003_chrY_G0000332;Parent=HG003_chrY_T0001002;transcript_name=HG003_chrY_T0001002;gene_name=TSPY25P;ID=exon:HG003_chrY_T0001002:4;Name=TSPY25P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9903312	9903779	.	-	.	source_gene_common_name=TSPY16P;source_gene=ENSG00000226223.1;alternative_source_transcripts=ENST00000449843.1,ENST00000449843.1;gene_id=HG003_chrY_G0000333;gene_biotype=unprocessed_pseudogene;gene_name=TSPY16P;gene_sources=liftoff;ID=HG003_chrY_G0000333;Name=TSPY16P
HG003_chrY	CAT	transcript	9903312	9903779	1000	-	.	source_transcript=ENST00000449843.1;source_transcript_name=TSPY16P-201;source_gene=ENSG00000226223.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226223.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449843.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY16P;alternative_source_transcripts=ENST00000449843.1,ENST00000449843.1;transcript_id=HG003_chrY_T0001003;gene_id=HG003_chrY_G0000333;Parent=HG003_chrY_G0000333;transcript_name=HG003_chrY_T0001003;gene_name=TSPY16P;ID=HG003_chrY_T0001003;Name=TSPY16P
HG003_chrY	CAT	exon	9903312	9903779	.	-	.	source_transcript=ENST00000449843.1;source_transcript_name=TSPY16P-201;source_gene=ENSG00000226223.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226223.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449843.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449843.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY16P;alternative_source_transcripts=ENST00000449843.1,ENST00000449843.1;transcript_id=HG003_chrY_T0001003;gene_id=HG003_chrY_G0000333;Parent=HG003_chrY_T0001003;transcript_name=HG003_chrY_T0001003;gene_name=TSPY16P;ID=exon:HG003_chrY_T0001003:0;Name=TSPY16P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9928297	9932078	.	+	.	source_gene_common_name=ENSG00000232617;source_gene=ENSG00000232617.1;alternative_source_transcripts=ENST00000426129.1,ENST00000426129.1;gene_id=HG003_chrY_G0000334;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000232617;gene_sources=liftoff;ID=HG003_chrY_G0000334;Name=ENSG00000232617
HG003_chrY	CAT	transcript	9928297	9932078	1000	+	.	source_transcript=ENST00000426129.1;source_transcript_name=ENST00000426129;source_gene=ENSG00000232617.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232617.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426129.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000232617;alternative_source_transcripts=ENST00000426129.1,ENST00000426129.1;transcript_id=HG003_chrY_T0001004;gene_id=HG003_chrY_G0000334;Parent=HG003_chrY_G0000334;transcript_name=HG003_chrY_T0001004;gene_name=ENSG00000232617;ID=HG003_chrY_T0001004;Name=ENSG00000232617
HG003_chrY	CAT	exon	9928297	9928469	.	+	.	source_transcript=ENST00000426129.1;source_transcript_name=ENST00000426129;source_gene=ENSG00000232617.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232617.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426129.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000232617;alternative_source_transcripts=ENST00000426129.1,ENST00000426129.1;transcript_id=HG003_chrY_T0001004;gene_id=HG003_chrY_G0000334;Parent=HG003_chrY_T0001004;transcript_name=HG003_chrY_T0001004;gene_name=ENSG00000232617;ID=exon:HG003_chrY_T0001004:0;Name=ENSG00000232617;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9928470	9931990	.	+	.	source_transcript=ENST00000426129.1;source_transcript_name=ENST00000426129;source_gene=ENSG00000232617.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232617.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426129.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000232617;alternative_source_transcripts=ENST00000426129.1,ENST00000426129.1;transcript_id=HG003_chrY_T0001004;gene_id=HG003_chrY_G0000334;Parent=HG003_chrY_T0001004;transcript_name=HG003_chrY_T0001004;gene_name=ENSG00000232617;ID=intron:HG003_chrY_T0001004:0;Name=ENSG00000232617;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9931991	9932078	.	+	.	source_transcript=ENST00000426129.1;source_transcript_name=ENST00000426129;source_gene=ENSG00000232617.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232617.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426129.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426129.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000232617;alternative_source_transcripts=ENST00000426129.1,ENST00000426129.1;transcript_id=HG003_chrY_T0001004;gene_id=HG003_chrY_G0000334;Parent=HG003_chrY_T0001004;transcript_name=HG003_chrY_T0001004;gene_name=ENSG00000232617;ID=exon:HG003_chrY_T0001004:1;Name=ENSG00000232617;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9954098	9964754	.	+	.	source_gene_common_name=TTTY8;source_gene=ENSG00000183385.10;alternative_source_transcripts=ENST00000849217.1;gene_id=HG003_chrY_G0000335;gene_biotype=lncRNA;gene_name=TTTY8;gene_sources=liftoff;ID=HG003_chrY_G0000335;Name=TTTY8
HG003_chrY	CAT	transcript	9954098	9956758	1000	+	.	source_transcript=ENST00000849217.1;source_transcript_name=TTTY8-206;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849217.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849217.1;transcript_id=HG003_chrY_T0001005;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_G0000335;transcript_name=HG003_chrY_T0001005;gene_name=TTTY8;ID=HG003_chrY_T0001005;Name=TTTY8
HG003_chrY	CAT	exon	9954098	9954137	.	+	.	source_transcript=ENST00000849217.1;source_transcript_name=TTTY8-206;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849217.1;transcript_id=HG003_chrY_T0001005;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001005;transcript_name=HG003_chrY_T0001005;gene_name=TTTY8;ID=exon:HG003_chrY_T0001005:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954138	9954771	.	+	.	source_transcript=ENST00000849217.1;source_transcript_name=TTTY8-206;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849217.1;transcript_id=HG003_chrY_T0001005;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001005;transcript_name=HG003_chrY_T0001005;gene_name=TTTY8;ID=intron:HG003_chrY_T0001005:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9954772	9954976	.	+	.	source_transcript=ENST00000849217.1;source_transcript_name=TTTY8-206;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849217.1;transcript_id=HG003_chrY_T0001005;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001005;transcript_name=HG003_chrY_T0001005;gene_name=TTTY8;ID=exon:HG003_chrY_T0001005:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954977	9956568	.	+	.	source_transcript=ENST00000849217.1;source_transcript_name=TTTY8-206;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849217.1;transcript_id=HG003_chrY_T0001005;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001005;transcript_name=HG003_chrY_T0001005;gene_name=TTTY8;ID=intron:HG003_chrY_T0001005:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9956569	9956758	.	+	.	source_transcript=ENST00000849217.1;source_transcript_name=TTTY8-206;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849217.1;transcript_id=HG003_chrY_T0001005;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001005;transcript_name=HG003_chrY_T0001005;gene_name=TTTY8;ID=exon:HG003_chrY_T0001005:2;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9954102	9964754	1000	+	.	source_transcript=ENST00000849214.1;source_transcript_name=TTTY8-203;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849214.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849214.1;transcript_id=HG003_chrY_T0001006;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_G0000335;transcript_name=HG003_chrY_T0001006;gene_name=TTTY8;ID=HG003_chrY_T0001006;Name=TTTY8
HG003_chrY	CAT	exon	9954102	9954294	.	+	.	source_transcript=ENST00000849214.1;source_transcript_name=TTTY8-203;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849214.1;transcript_id=HG003_chrY_T0001006;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001006;transcript_name=HG003_chrY_T0001006;gene_name=TTTY8;ID=exon:HG003_chrY_T0001006:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954295	9954771	.	+	.	source_transcript=ENST00000849214.1;source_transcript_name=TTTY8-203;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849214.1;transcript_id=HG003_chrY_T0001006;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001006;transcript_name=HG003_chrY_T0001006;gene_name=TTTY8;ID=intron:HG003_chrY_T0001006:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9954772	9954976	.	+	.	source_transcript=ENST00000849214.1;source_transcript_name=TTTY8-203;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849214.1;transcript_id=HG003_chrY_T0001006;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001006;transcript_name=HG003_chrY_T0001006;gene_name=TTTY8;ID=exon:HG003_chrY_T0001006:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954977	9964503	.	+	.	source_transcript=ENST00000849214.1;source_transcript_name=TTTY8-203;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849214.1;transcript_id=HG003_chrY_T0001006;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001006;transcript_name=HG003_chrY_T0001006;gene_name=TTTY8;ID=intron:HG003_chrY_T0001006:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9964504	9964754	.	+	.	source_transcript=ENST00000849214.1;source_transcript_name=TTTY8-203;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849214.1;transcript_id=HG003_chrY_T0001006;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001006;transcript_name=HG003_chrY_T0001006;gene_name=TTTY8;ID=exon:HG003_chrY_T0001006:2;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9954114	9964726	1000	+	.	source_transcript=ENST00000849215.1;source_transcript_name=TTTY8-204;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849215.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849215.1;transcript_id=HG003_chrY_T0001007;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_G0000335;transcript_name=HG003_chrY_T0001007;gene_name=TTTY8;ID=HG003_chrY_T0001007;Name=TTTY8
HG003_chrY	CAT	exon	9954114	9954137	.	+	.	source_transcript=ENST00000849215.1;source_transcript_name=TTTY8-204;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849215.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849215.1;transcript_id=HG003_chrY_T0001007;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001007;transcript_name=HG003_chrY_T0001007;gene_name=TTTY8;ID=exon:HG003_chrY_T0001007:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954138	9954771	.	+	.	source_transcript=ENST00000849215.1;source_transcript_name=TTTY8-204;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849215.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849215.1;transcript_id=HG003_chrY_T0001007;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001007;transcript_name=HG003_chrY_T0001007;gene_name=TTTY8;ID=intron:HG003_chrY_T0001007:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9954772	9954976	.	+	.	source_transcript=ENST00000849215.1;source_transcript_name=TTTY8-204;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849215.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849215.1;transcript_id=HG003_chrY_T0001007;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001007;transcript_name=HG003_chrY_T0001007;gene_name=TTTY8;ID=exon:HG003_chrY_T0001007:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954977	9964503	.	+	.	source_transcript=ENST00000849215.1;source_transcript_name=TTTY8-204;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849215.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849215.1;transcript_id=HG003_chrY_T0001007;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001007;transcript_name=HG003_chrY_T0001007;gene_name=TTTY8;ID=intron:HG003_chrY_T0001007:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9964504	9964726	.	+	.	source_transcript=ENST00000849215.1;source_transcript_name=TTTY8-204;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849215.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849215.1;transcript_id=HG003_chrY_T0001007;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001007;transcript_name=HG003_chrY_T0001007;gene_name=TTTY8;ID=exon:HG003_chrY_T0001007:2;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9954128	9956758	1000	+	.	source_transcript=ENST00000329684.8;source_transcript_name=TTTY8-201;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000329684.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000329684.8;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000329684.8;transcript_id=HG003_chrY_T0001008;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_G0000335;transcript_name=HG003_chrY_T0001008;gene_name=TTTY8;ID=HG003_chrY_T0001008;Name=TTTY8
HG003_chrY	CAT	exon	9954128	9954294	.	+	.	source_transcript=ENST00000329684.8;source_transcript_name=TTTY8-201;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000329684.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000329684.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000329684.8;transcript_id=HG003_chrY_T0001008;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001008;transcript_name=HG003_chrY_T0001008;gene_name=TTTY8;ID=exon:HG003_chrY_T0001008:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954295	9954771	.	+	.	source_transcript=ENST00000329684.8;source_transcript_name=TTTY8-201;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000329684.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000329684.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000329684.8;transcript_id=HG003_chrY_T0001008;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001008;transcript_name=HG003_chrY_T0001008;gene_name=TTTY8;ID=intron:HG003_chrY_T0001008:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9954772	9954976	.	+	.	source_transcript=ENST00000329684.8;source_transcript_name=TTTY8-201;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000329684.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000329684.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000329684.8;transcript_id=HG003_chrY_T0001008;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001008;transcript_name=HG003_chrY_T0001008;gene_name=TTTY8;ID=exon:HG003_chrY_T0001008:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954977	9956568	.	+	.	source_transcript=ENST00000329684.8;source_transcript_name=TTTY8-201;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000329684.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000329684.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000329684.8;transcript_id=HG003_chrY_T0001008;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001008;transcript_name=HG003_chrY_T0001008;gene_name=TTTY8;ID=intron:HG003_chrY_T0001008:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9956569	9956758	.	+	.	source_transcript=ENST00000329684.8;source_transcript_name=TTTY8-201;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000329684.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000329684.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000329684.8;transcript_id=HG003_chrY_T0001008;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001008;transcript_name=HG003_chrY_T0001008;gene_name=TTTY8;ID=exon:HG003_chrY_T0001008:2;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9954134	9957016	1000	+	.	source_transcript=ENST00000426035.2;source_transcript_name=TTTY8-202;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426035.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000426035.2;transcript_score=299.81600000000003;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000426035.2;transcript_id=HG003_chrY_T0001009;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_G0000335;transcript_name=HG003_chrY_T0001009;gene_name=TTTY8;ID=HG003_chrY_T0001009;Name=TTTY8
HG003_chrY	CAT	exon	9954134	9954294	.	+	.	source_transcript=ENST00000426035.2;source_transcript_name=TTTY8-202;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426035.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000426035.2;transcript_score=299.81600000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000426035.2;transcript_id=HG003_chrY_T0001009;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001009;transcript_name=HG003_chrY_T0001009;gene_name=TTTY8;ID=exon:HG003_chrY_T0001009:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954295	9954771	.	+	.	source_transcript=ENST00000426035.2;source_transcript_name=TTTY8-202;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426035.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000426035.2;transcript_score=299.81600000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000426035.2;transcript_id=HG003_chrY_T0001009;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001009;transcript_name=HG003_chrY_T0001009;gene_name=TTTY8;ID=intron:HG003_chrY_T0001009:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9954772	9954976	.	+	.	source_transcript=ENST00000426035.2;source_transcript_name=TTTY8-202;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426035.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000426035.2;transcript_score=299.81600000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000426035.2;transcript_id=HG003_chrY_T0001009;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001009;transcript_name=HG003_chrY_T0001009;gene_name=TTTY8;ID=exon:HG003_chrY_T0001009:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954977	9956839	.	+	.	source_transcript=ENST00000426035.2;source_transcript_name=TTTY8-202;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426035.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000426035.2;transcript_score=299.81600000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000426035.2;transcript_id=HG003_chrY_T0001009;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001009;transcript_name=HG003_chrY_T0001009;gene_name=TTTY8;ID=intron:HG003_chrY_T0001009:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9956840	9957016	.	+	.	source_transcript=ENST00000426035.2;source_transcript_name=TTTY8-202;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000426035.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000426035.2;transcript_score=299.81600000000003;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000426035.2;transcript_id=HG003_chrY_T0001009;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001009;transcript_name=HG003_chrY_T0001009;gene_name=TTTY8;ID=exon:HG003_chrY_T0001009:2;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9954159	9957004	1000	+	.	source_transcript=ENST00000849216.1;source_transcript_name=TTTY8-205;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849216.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849216.1;transcript_id=HG003_chrY_T0001010;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_G0000335;transcript_name=HG003_chrY_T0001010;gene_name=TTTY8;ID=HG003_chrY_T0001010;Name=TTTY8
HG003_chrY	CAT	exon	9954159	9954294	.	+	.	source_transcript=ENST00000849216.1;source_transcript_name=TTTY8-205;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849216.1;transcript_id=HG003_chrY_T0001010;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001010;transcript_name=HG003_chrY_T0001010;gene_name=TTTY8;ID=exon:HG003_chrY_T0001010:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954295	9954775	.	+	.	source_transcript=ENST00000849216.1;source_transcript_name=TTTY8-205;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849216.1;transcript_id=HG003_chrY_T0001010;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001010;transcript_name=HG003_chrY_T0001010;gene_name=TTTY8;ID=intron:HG003_chrY_T0001010:0;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9954776	9954976	.	+	.	source_transcript=ENST00000849216.1;source_transcript_name=TTTY8-205;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849216.1;transcript_id=HG003_chrY_T0001010;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001010;transcript_name=HG003_chrY_T0001010;gene_name=TTTY8;ID=exon:HG003_chrY_T0001010:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9954977	9956839	.	+	.	source_transcript=ENST00000849216.1;source_transcript_name=TTTY8-205;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849216.1;transcript_id=HG003_chrY_T0001010;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001010;transcript_name=HG003_chrY_T0001010;gene_name=TTTY8;ID=intron:HG003_chrY_T0001010:1;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9956840	9957004	.	+	.	source_transcript=ENST00000849216.1;source_transcript_name=TTTY8-205;source_gene=ENSG00000183385.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183385.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000849216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000849216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY8;alternative_source_transcripts=ENST00000849216.1;transcript_id=HG003_chrY_T0001010;gene_id=HG003_chrY_G0000335;Parent=HG003_chrY_T0001010;transcript_name=HG003_chrY_T0001010;gene_name=TTTY8;ID=exon:HG003_chrY_T0001010:2;Name=TTTY8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9969883	9986923	.	-	.	source_gene_common_name=TTTY7B;source_gene=ENSG00000147761.10;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;gene_id=HG003_chrY_G0000336;gene_biotype=lncRNA;gene_name=TTTY7B;gene_sources=liftoff;ID=HG003_chrY_G0000336;Name=TTTY7B
HG003_chrY	CAT	transcript	9969883	9978321	1000	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=HG003_chrY_T0001011;Name=TTTY7B
HG003_chrY	CAT	exon	9969883	9970128	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001011:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9970129	9970374	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001011:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9970375	9970630	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001011:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9970631	9971603	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001011:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9971604	9971717	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001011:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9971718	9973634	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001011:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9973635	9974111	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001011:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9974112	9974799	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001011:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9974800	9974874	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001011:4;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9974875	9977181	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001011:4;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9977182	9977343	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001011:5;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977344	9978284	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001011:5;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9978285	9978321	.	-	.	source_transcript=ENST00000276779.8;source_transcript_name=TTTY7B-201;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000276779.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000276779.8;transcript_score=299.927;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000276779.8,ENST00000276779.8;transcript_id=HG003_chrY_T0001011;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001011;transcript_name=HG003_chrY_T0001011;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001011:6;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9969883	9978321	1000	-	.	source_transcript=ENST00000415405.1;source_transcript_name=TTTY7B-202;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000415405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415405.1;transcript_score=299.90999999999997;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000415405.1,ENST00000415405.1;transcript_id=HG003_chrY_T0001012;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001012;gene_name=TTTY7B;ID=HG003_chrY_T0001012;Name=TTTY7B
HG003_chrY	CAT	exon	9969883	9970128	.	-	.	source_transcript=ENST00000415405.1;source_transcript_name=TTTY7B-202;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000415405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415405.1;transcript_score=299.90999999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000415405.1,ENST00000415405.1;transcript_id=HG003_chrY_T0001012;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001012;transcript_name=HG003_chrY_T0001012;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001012:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9970129	9971603	.	-	.	source_transcript=ENST00000415405.1;source_transcript_name=TTTY7B-202;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000415405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415405.1;transcript_score=299.90999999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000415405.1,ENST00000415405.1;transcript_id=HG003_chrY_T0001012;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001012;transcript_name=HG003_chrY_T0001012;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001012:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9971604	9971717	.	-	.	source_transcript=ENST00000415405.1;source_transcript_name=TTTY7B-202;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000415405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415405.1;transcript_score=299.90999999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000415405.1,ENST00000415405.1;transcript_id=HG003_chrY_T0001012;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001012;transcript_name=HG003_chrY_T0001012;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001012:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9971718	9973634	.	-	.	source_transcript=ENST00000415405.1;source_transcript_name=TTTY7B-202;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000415405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415405.1;transcript_score=299.90999999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000415405.1,ENST00000415405.1;transcript_id=HG003_chrY_T0001012;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001012;transcript_name=HG003_chrY_T0001012;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001012:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9973635	9974111	.	-	.	source_transcript=ENST00000415405.1;source_transcript_name=TTTY7B-202;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000415405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415405.1;transcript_score=299.90999999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000415405.1,ENST00000415405.1;transcript_id=HG003_chrY_T0001012;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001012;transcript_name=HG003_chrY_T0001012;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001012:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9974112	9974799	.	-	.	source_transcript=ENST00000415405.1;source_transcript_name=TTTY7B-202;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000415405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415405.1;transcript_score=299.90999999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000415405.1,ENST00000415405.1;transcript_id=HG003_chrY_T0001012;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001012;transcript_name=HG003_chrY_T0001012;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001012:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9974800	9974874	.	-	.	source_transcript=ENST00000415405.1;source_transcript_name=TTTY7B-202;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000415405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415405.1;transcript_score=299.90999999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000415405.1,ENST00000415405.1;transcript_id=HG003_chrY_T0001012;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001012;transcript_name=HG003_chrY_T0001012;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001012:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9974875	9977181	.	-	.	source_transcript=ENST00000415405.1;source_transcript_name=TTTY7B-202;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000415405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415405.1;transcript_score=299.90999999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000415405.1,ENST00000415405.1;transcript_id=HG003_chrY_T0001012;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001012;transcript_name=HG003_chrY_T0001012;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001012:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9977182	9977343	.	-	.	source_transcript=ENST00000415405.1;source_transcript_name=TTTY7B-202;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000415405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415405.1;transcript_score=299.90999999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000415405.1,ENST00000415405.1;transcript_id=HG003_chrY_T0001012;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001012;transcript_name=HG003_chrY_T0001012;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001012:4;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977344	9978284	.	-	.	source_transcript=ENST00000415405.1;source_transcript_name=TTTY7B-202;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000415405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415405.1;transcript_score=299.90999999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000415405.1,ENST00000415405.1;transcript_id=HG003_chrY_T0001012;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001012;transcript_name=HG003_chrY_T0001012;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001012:4;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9978285	9978321	.	-	.	source_transcript=ENST00000415405.1;source_transcript_name=TTTY7B-202;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000415405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415405.1;transcript_score=299.90999999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000415405.1,ENST00000415405.1;transcript_id=HG003_chrY_T0001012;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001012;transcript_name=HG003_chrY_T0001012;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001012:5;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9969883	9973884	1000	-	.	source_transcript=ENST00000447655.5;source_transcript_name=TTTY7B-204;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447655.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000447655.5;transcript_score=299.859;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000447655.5,ENST00000447655.5;transcript_id=HG003_chrY_T0001013;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001013;gene_name=TTTY7B;ID=HG003_chrY_T0001013;Name=TTTY7B
HG003_chrY	CAT	exon	9969883	9970128	.	-	.	source_transcript=ENST00000447655.5;source_transcript_name=TTTY7B-204;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447655.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000447655.5;transcript_score=299.859;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000447655.5,ENST00000447655.5;transcript_id=HG003_chrY_T0001013;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001013;transcript_name=HG003_chrY_T0001013;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001013:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9970129	9971603	.	-	.	source_transcript=ENST00000447655.5;source_transcript_name=TTTY7B-204;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447655.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000447655.5;transcript_score=299.859;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000447655.5,ENST00000447655.5;transcript_id=HG003_chrY_T0001013;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001013;transcript_name=HG003_chrY_T0001013;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001013:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9971604	9971816	.	-	.	source_transcript=ENST00000447655.5;source_transcript_name=TTTY7B-204;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447655.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000447655.5;transcript_score=299.859;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000447655.5,ENST00000447655.5;transcript_id=HG003_chrY_T0001013;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001013;transcript_name=HG003_chrY_T0001013;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001013:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9971817	9973634	.	-	.	source_transcript=ENST00000447655.5;source_transcript_name=TTTY7B-204;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447655.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000447655.5;transcript_score=299.859;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000447655.5,ENST00000447655.5;transcript_id=HG003_chrY_T0001013;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001013;transcript_name=HG003_chrY_T0001013;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001013:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9973635	9973884	.	-	.	source_transcript=ENST00000447655.5;source_transcript_name=TTTY7B-204;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447655.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000447655.5;transcript_score=299.859;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000447655.5,ENST00000447655.5;transcript_id=HG003_chrY_T0001013;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001013;transcript_name=HG003_chrY_T0001013;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001013:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9969883	9984445	1000	-	.	source_transcript=ENST00000715682.1;source_transcript_name=TTTY7B-205;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715682.1;transcript_score=299.876;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000715682.1,ENST00000715682.1;transcript_id=HG003_chrY_T0001014;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001014;gene_name=TTTY7B;ID=HG003_chrY_T0001014;Name=TTTY7B
HG003_chrY	CAT	exon	9969883	9970128	.	-	.	source_transcript=ENST00000715682.1;source_transcript_name=TTTY7B-205;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715682.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000715682.1,ENST00000715682.1;transcript_id=HG003_chrY_T0001014;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001014;transcript_name=HG003_chrY_T0001014;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001014:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9970129	9971603	.	-	.	source_transcript=ENST00000715682.1;source_transcript_name=TTTY7B-205;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715682.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000715682.1,ENST00000715682.1;transcript_id=HG003_chrY_T0001014;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001014;transcript_name=HG003_chrY_T0001014;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001014:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9971604	9971717	.	-	.	source_transcript=ENST00000715682.1;source_transcript_name=TTTY7B-205;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715682.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000715682.1,ENST00000715682.1;transcript_id=HG003_chrY_T0001014;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001014;transcript_name=HG003_chrY_T0001014;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001014:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9971718	9974799	.	-	.	source_transcript=ENST00000715682.1;source_transcript_name=TTTY7B-205;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715682.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000715682.1,ENST00000715682.1;transcript_id=HG003_chrY_T0001014;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001014;transcript_name=HG003_chrY_T0001014;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001014:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9974800	9974874	.	-	.	source_transcript=ENST00000715682.1;source_transcript_name=TTTY7B-205;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715682.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000715682.1,ENST00000715682.1;transcript_id=HG003_chrY_T0001014;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001014;transcript_name=HG003_chrY_T0001014;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001014:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9974875	9977181	.	-	.	source_transcript=ENST00000715682.1;source_transcript_name=TTTY7B-205;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715682.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000715682.1,ENST00000715682.1;transcript_id=HG003_chrY_T0001014;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001014;transcript_name=HG003_chrY_T0001014;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001014:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9977182	9977263	.	-	.	source_transcript=ENST00000715682.1;source_transcript_name=TTTY7B-205;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715682.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000715682.1,ENST00000715682.1;transcript_id=HG003_chrY_T0001014;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001014;transcript_name=HG003_chrY_T0001014;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001014:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9984153	.	-	.	source_transcript=ENST00000715682.1;source_transcript_name=TTTY7B-205;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715682.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000715682.1,ENST00000715682.1;transcript_id=HG003_chrY_T0001014;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001014;transcript_name=HG003_chrY_T0001014;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001014:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9984154	9984445	.	-	.	source_transcript=ENST00000715682.1;source_transcript_name=TTTY7B-205;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000715682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000715682.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000715682.1,ENST00000715682.1;transcript_id=HG003_chrY_T0001014;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001014;transcript_name=HG003_chrY_T0001014;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001014:4;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9969883	9984445	1000	-	.	source_transcript=ENST00000757617.1;source_transcript_name=TTTY7B-206;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757617.1;transcript_score=299.897;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757617.1,ENST00000757617.1;transcript_id=HG003_chrY_T0001015;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001015;gene_name=TTTY7B;ID=HG003_chrY_T0001015;Name=TTTY7B
HG003_chrY	CAT	exon	9969883	9970128	.	-	.	source_transcript=ENST00000757617.1;source_transcript_name=TTTY7B-206;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757617.1;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757617.1,ENST00000757617.1;transcript_id=HG003_chrY_T0001015;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001015;transcript_name=HG003_chrY_T0001015;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001015:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9970129	9971603	.	-	.	source_transcript=ENST00000757617.1;source_transcript_name=TTTY7B-206;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757617.1;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757617.1,ENST00000757617.1;transcript_id=HG003_chrY_T0001015;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001015;transcript_name=HG003_chrY_T0001015;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001015:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9971604	9971717	.	-	.	source_transcript=ENST00000757617.1;source_transcript_name=TTTY7B-206;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757617.1;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757617.1,ENST00000757617.1;transcript_id=HG003_chrY_T0001015;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001015;transcript_name=HG003_chrY_T0001015;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001015:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9971718	9974799	.	-	.	source_transcript=ENST00000757617.1;source_transcript_name=TTTY7B-206;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757617.1;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757617.1,ENST00000757617.1;transcript_id=HG003_chrY_T0001015;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001015;transcript_name=HG003_chrY_T0001015;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001015:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9974800	9974874	.	-	.	source_transcript=ENST00000757617.1;source_transcript_name=TTTY7B-206;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757617.1;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757617.1,ENST00000757617.1;transcript_id=HG003_chrY_T0001015;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001015;transcript_name=HG003_chrY_T0001015;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001015:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9974875	9977181	.	-	.	source_transcript=ENST00000757617.1;source_transcript_name=TTTY7B-206;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757617.1;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757617.1,ENST00000757617.1;transcript_id=HG003_chrY_T0001015;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001015;transcript_name=HG003_chrY_T0001015;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001015:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9977182	9977263	.	-	.	source_transcript=ENST00000757617.1;source_transcript_name=TTTY7B-206;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757617.1;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757617.1,ENST00000757617.1;transcript_id=HG003_chrY_T0001015;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001015;transcript_name=HG003_chrY_T0001015;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001015:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9982871	.	-	.	source_transcript=ENST00000757617.1;source_transcript_name=TTTY7B-206;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757617.1;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757617.1,ENST00000757617.1;transcript_id=HG003_chrY_T0001015;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001015;transcript_name=HG003_chrY_T0001015;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001015:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9982872	9983029	.	-	.	source_transcript=ENST00000757617.1;source_transcript_name=TTTY7B-206;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757617.1;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757617.1,ENST00000757617.1;transcript_id=HG003_chrY_T0001015;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001015;transcript_name=HG003_chrY_T0001015;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001015:4;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9983030	9984153	.	-	.	source_transcript=ENST00000757617.1;source_transcript_name=TTTY7B-206;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757617.1;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757617.1,ENST00000757617.1;transcript_id=HG003_chrY_T0001015;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001015;transcript_name=HG003_chrY_T0001015;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001015:4;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9984154	9984445	.	-	.	source_transcript=ENST00000757617.1;source_transcript_name=TTTY7B-206;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757617.1;transcript_score=299.897;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757617.1,ENST00000757617.1;transcript_id=HG003_chrY_T0001015;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001015;transcript_name=HG003_chrY_T0001015;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001015:5;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9969883	9973936	1000	-	.	source_transcript=ENST00000757627.1;source_transcript_name=TTTY7B-216;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757627.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757627.1;transcript_score=299.818;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757627.1,ENST00000757627.1;transcript_id=HG003_chrY_T0001016;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001016;gene_name=TTTY7B;ID=HG003_chrY_T0001016;Name=TTTY7B
HG003_chrY	CAT	exon	9969883	9970128	.	-	.	source_transcript=ENST00000757627.1;source_transcript_name=TTTY7B-216;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757627.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757627.1;transcript_score=299.818;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757627.1,ENST00000757627.1;transcript_id=HG003_chrY_T0001016;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001016;transcript_name=HG003_chrY_T0001016;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001016:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9970129	9973634	.	-	.	source_transcript=ENST00000757627.1;source_transcript_name=TTTY7B-216;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757627.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757627.1;transcript_score=299.818;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757627.1,ENST00000757627.1;transcript_id=HG003_chrY_T0001016;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001016;transcript_name=HG003_chrY_T0001016;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001016:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9973635	9973936	.	-	.	source_transcript=ENST00000757627.1;source_transcript_name=TTTY7B-216;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757627.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757627.1;transcript_score=299.818;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757627.1,ENST00000757627.1;transcript_id=HG003_chrY_T0001016;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001016;transcript_name=HG003_chrY_T0001016;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001016:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9969887	9982030	1000	-	.	source_transcript=ENST00000757618.1;source_transcript_name=TTTY7B-207;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757618.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757618.1;transcript_score=299.876;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757618.1,ENST00000757618.1;transcript_id=HG003_chrY_T0001017;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001017;gene_name=TTTY7B;ID=HG003_chrY_T0001017;Name=TTTY7B
HG003_chrY	CAT	exon	9969887	9970128	.	-	.	source_transcript=ENST00000757618.1;source_transcript_name=TTTY7B-207;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757618.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757618.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757618.1,ENST00000757618.1;transcript_id=HG003_chrY_T0001017;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001017;transcript_name=HG003_chrY_T0001017;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001017:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9970129	9971603	.	-	.	source_transcript=ENST00000757618.1;source_transcript_name=TTTY7B-207;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757618.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757618.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757618.1,ENST00000757618.1;transcript_id=HG003_chrY_T0001017;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001017;transcript_name=HG003_chrY_T0001017;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001017:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9971604	9971717	.	-	.	source_transcript=ENST00000757618.1;source_transcript_name=TTTY7B-207;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757618.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757618.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757618.1,ENST00000757618.1;transcript_id=HG003_chrY_T0001017;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001017;transcript_name=HG003_chrY_T0001017;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001017:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9971718	9974799	.	-	.	source_transcript=ENST00000757618.1;source_transcript_name=TTTY7B-207;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757618.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757618.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757618.1,ENST00000757618.1;transcript_id=HG003_chrY_T0001017;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001017;transcript_name=HG003_chrY_T0001017;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001017:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9974800	9974874	.	-	.	source_transcript=ENST00000757618.1;source_transcript_name=TTTY7B-207;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757618.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757618.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757618.1,ENST00000757618.1;transcript_id=HG003_chrY_T0001017;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001017;transcript_name=HG003_chrY_T0001017;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001017:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9974875	9977181	.	-	.	source_transcript=ENST00000757618.1;source_transcript_name=TTTY7B-207;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757618.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757618.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757618.1,ENST00000757618.1;transcript_id=HG003_chrY_T0001017;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001017;transcript_name=HG003_chrY_T0001017;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001017:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9977182	9977263	.	-	.	source_transcript=ENST00000757618.1;source_transcript_name=TTTY7B-207;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757618.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757618.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757618.1,ENST00000757618.1;transcript_id=HG003_chrY_T0001017;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001017;transcript_name=HG003_chrY_T0001017;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001017:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9981736	.	-	.	source_transcript=ENST00000757618.1;source_transcript_name=TTTY7B-207;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757618.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757618.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757618.1,ENST00000757618.1;transcript_id=HG003_chrY_T0001017;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001017;transcript_name=HG003_chrY_T0001017;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001017:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9981737	9982030	.	-	.	source_transcript=ENST00000757618.1;source_transcript_name=TTTY7B-207;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757618.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757618.1;transcript_score=299.876;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757618.1,ENST00000757618.1;transcript_id=HG003_chrY_T0001017;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001017;transcript_name=HG003_chrY_T0001017;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001017:4;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9977088	9984466	1000	-	.	source_transcript=ENST00000757621.1;source_transcript_name=TTTY7B-210;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757621.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757621.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757621.1,ENST00000757621.1;transcript_id=HG003_chrY_T0001018;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001018;gene_name=TTTY7B;ID=HG003_chrY_T0001018;Name=TTTY7B
HG003_chrY	CAT	exon	9977088	9977263	.	-	.	source_transcript=ENST00000757621.1;source_transcript_name=TTTY7B-210;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757621.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757621.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757621.1,ENST00000757621.1;transcript_id=HG003_chrY_T0001018;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001018;transcript_name=HG003_chrY_T0001018;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001018:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9982871	.	-	.	source_transcript=ENST00000757621.1;source_transcript_name=TTTY7B-210;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757621.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757621.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757621.1,ENST00000757621.1;transcript_id=HG003_chrY_T0001018;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001018;transcript_name=HG003_chrY_T0001018;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001018:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9982872	9983029	.	-	.	source_transcript=ENST00000757621.1;source_transcript_name=TTTY7B-210;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757621.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757621.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757621.1,ENST00000757621.1;transcript_id=HG003_chrY_T0001018;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001018;transcript_name=HG003_chrY_T0001018;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001018:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9983030	9984153	.	-	.	source_transcript=ENST00000757621.1;source_transcript_name=TTTY7B-210;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757621.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757621.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757621.1,ENST00000757621.1;transcript_id=HG003_chrY_T0001018;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001018;transcript_name=HG003_chrY_T0001018;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001018:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9984154	9984466	.	-	.	source_transcript=ENST00000757621.1;source_transcript_name=TTTY7B-210;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757621.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757621.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757621.1,ENST00000757621.1;transcript_id=HG003_chrY_T0001018;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001018;transcript_name=HG003_chrY_T0001018;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001018:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9977089	9984473	1000	-	.	source_transcript=ENST00000757620.1;source_transcript_name=TTTY7B-209;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757620.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757620.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757620.1,ENST00000757620.1;transcript_id=HG003_chrY_T0001019;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001019;gene_name=TTTY7B;ID=HG003_chrY_T0001019;Name=TTTY7B
HG003_chrY	CAT	exon	9977089	9977263	.	-	.	source_transcript=ENST00000757620.1;source_transcript_name=TTTY7B-209;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757620.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757620.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757620.1,ENST00000757620.1;transcript_id=HG003_chrY_T0001019;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001019;transcript_name=HG003_chrY_T0001019;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001019:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9984153	.	-	.	source_transcript=ENST00000757620.1;source_transcript_name=TTTY7B-209;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757620.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757620.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757620.1,ENST00000757620.1;transcript_id=HG003_chrY_T0001019;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001019;transcript_name=HG003_chrY_T0001019;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001019:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9984154	9984473	.	-	.	source_transcript=ENST00000757620.1;source_transcript_name=TTTY7B-209;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757620.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757620.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757620.1,ENST00000757620.1;transcript_id=HG003_chrY_T0001019;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001019;transcript_name=HG003_chrY_T0001019;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001019:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9977093	9984440	1000	-	.	source_transcript=ENST00000757623.1;source_transcript_name=TTTY7B-212;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757623.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757623.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757623.1,ENST00000757623.1;transcript_id=HG003_chrY_T0001020;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001020;gene_name=TTTY7B;ID=HG003_chrY_T0001020;Name=TTTY7B
HG003_chrY	CAT	exon	9977093	9977263	.	-	.	source_transcript=ENST00000757623.1;source_transcript_name=TTTY7B-212;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757623.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757623.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757623.1,ENST00000757623.1;transcript_id=HG003_chrY_T0001020;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001020;transcript_name=HG003_chrY_T0001020;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001020:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9980179	.	-	.	source_transcript=ENST00000757623.1;source_transcript_name=TTTY7B-212;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757623.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757623.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757623.1,ENST00000757623.1;transcript_id=HG003_chrY_T0001020;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001020;transcript_name=HG003_chrY_T0001020;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001020:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9980180	9980286	.	-	.	source_transcript=ENST00000757623.1;source_transcript_name=TTTY7B-212;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757623.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757623.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757623.1,ENST00000757623.1;transcript_id=HG003_chrY_T0001020;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001020;transcript_name=HG003_chrY_T0001020;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001020:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9980287	9980682	.	-	.	source_transcript=ENST00000757623.1;source_transcript_name=TTTY7B-212;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757623.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757623.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757623.1,ENST00000757623.1;transcript_id=HG003_chrY_T0001020;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001020;transcript_name=HG003_chrY_T0001020;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001020:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9980683	9980816	.	-	.	source_transcript=ENST00000757623.1;source_transcript_name=TTTY7B-212;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757623.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757623.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757623.1,ENST00000757623.1;transcript_id=HG003_chrY_T0001020;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001020;transcript_name=HG003_chrY_T0001020;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001020:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9980817	9984153	.	-	.	source_transcript=ENST00000757623.1;source_transcript_name=TTTY7B-212;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757623.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757623.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757623.1,ENST00000757623.1;transcript_id=HG003_chrY_T0001020;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001020;transcript_name=HG003_chrY_T0001020;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001020:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9984154	9984440	.	-	.	source_transcript=ENST00000757623.1;source_transcript_name=TTTY7B-212;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757623.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757623.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757623.1,ENST00000757623.1;transcript_id=HG003_chrY_T0001020;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001020;transcript_name=HG003_chrY_T0001020;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001020:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9977094	9984444	1000	-	.	source_transcript=ENST00000757622.1;source_transcript_name=TTTY7B-211;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757622.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757622.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757622.1,ENST00000757622.1;transcript_id=HG003_chrY_T0001021;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001021;gene_name=TTTY7B;ID=HG003_chrY_T0001021;Name=TTTY7B
HG003_chrY	CAT	exon	9977094	9977263	.	-	.	source_transcript=ENST00000757622.1;source_transcript_name=TTTY7B-211;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757622.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757622.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757622.1,ENST00000757622.1;transcript_id=HG003_chrY_T0001021;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001021;transcript_name=HG003_chrY_T0001021;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001021:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9980179	.	-	.	source_transcript=ENST00000757622.1;source_transcript_name=TTTY7B-211;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757622.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757622.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757622.1,ENST00000757622.1;transcript_id=HG003_chrY_T0001021;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001021;transcript_name=HG003_chrY_T0001021;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001021:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9980180	9980286	.	-	.	source_transcript=ENST00000757622.1;source_transcript_name=TTTY7B-211;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757622.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757622.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757622.1,ENST00000757622.1;transcript_id=HG003_chrY_T0001021;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001021;transcript_name=HG003_chrY_T0001021;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001021:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9980287	9980682	.	-	.	source_transcript=ENST00000757622.1;source_transcript_name=TTTY7B-211;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757622.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757622.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757622.1,ENST00000757622.1;transcript_id=HG003_chrY_T0001021;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001021;transcript_name=HG003_chrY_T0001021;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001021:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9980683	9980816	.	-	.	source_transcript=ENST00000757622.1;source_transcript_name=TTTY7B-211;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757622.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757622.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757622.1,ENST00000757622.1;transcript_id=HG003_chrY_T0001021;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001021;transcript_name=HG003_chrY_T0001021;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001021:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9980817	9982871	.	-	.	source_transcript=ENST00000757622.1;source_transcript_name=TTTY7B-211;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757622.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757622.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757622.1,ENST00000757622.1;transcript_id=HG003_chrY_T0001021;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001021;transcript_name=HG003_chrY_T0001021;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001021:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9982872	9983029	.	-	.	source_transcript=ENST00000757622.1;source_transcript_name=TTTY7B-211;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757622.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757622.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757622.1,ENST00000757622.1;transcript_id=HG003_chrY_T0001021;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001021;transcript_name=HG003_chrY_T0001021;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001021:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9983030	9984153	.	-	.	source_transcript=ENST00000757622.1;source_transcript_name=TTTY7B-211;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757622.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757622.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757622.1,ENST00000757622.1;transcript_id=HG003_chrY_T0001021;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001021;transcript_name=HG003_chrY_T0001021;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001021:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9984154	9984444	.	-	.	source_transcript=ENST00000757622.1;source_transcript_name=TTTY7B-211;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757622.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757622.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757622.1,ENST00000757622.1;transcript_id=HG003_chrY_T0001021;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001021;transcript_name=HG003_chrY_T0001021;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001021:4;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9977095	9984453	1000	-	.	source_transcript=ENST00000430228.2;source_transcript_name=TTTY7B-203;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000430228.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430228.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000430228.2,ENST00000430228.2;transcript_id=HG003_chrY_T0001022;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001022;gene_name=TTTY7B;ID=HG003_chrY_T0001022;Name=TTTY7B
HG003_chrY	CAT	exon	9977095	9977263	.	-	.	source_transcript=ENST00000430228.2;source_transcript_name=TTTY7B-203;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000430228.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430228.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000430228.2,ENST00000430228.2;transcript_id=HG003_chrY_T0001022;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001022;transcript_name=HG003_chrY_T0001022;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001022:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9980682	.	-	.	source_transcript=ENST00000430228.2;source_transcript_name=TTTY7B-203;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000430228.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430228.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000430228.2,ENST00000430228.2;transcript_id=HG003_chrY_T0001022;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001022;transcript_name=HG003_chrY_T0001022;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001022:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9980683	9980816	.	-	.	source_transcript=ENST00000430228.2;source_transcript_name=TTTY7B-203;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000430228.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430228.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000430228.2,ENST00000430228.2;transcript_id=HG003_chrY_T0001022;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001022;transcript_name=HG003_chrY_T0001022;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001022:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9980817	9984153	.	-	.	source_transcript=ENST00000430228.2;source_transcript_name=TTTY7B-203;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000430228.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430228.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000430228.2,ENST00000430228.2;transcript_id=HG003_chrY_T0001022;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001022;transcript_name=HG003_chrY_T0001022;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001022:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9984154	9984453	.	-	.	source_transcript=ENST00000430228.2;source_transcript_name=TTTY7B-203;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000430228.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430228.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000430228.2,ENST00000430228.2;transcript_id=HG003_chrY_T0001022;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001022;transcript_name=HG003_chrY_T0001022;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001022:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9977098	9984419	1000	-	.	source_transcript=ENST00000757625.1;source_transcript_name=TTTY7B-214;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757625.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757625.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757625.1,ENST00000757625.1;transcript_id=HG003_chrY_T0001023;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001023;gene_name=TTTY7B;ID=HG003_chrY_T0001023;Name=TTTY7B
HG003_chrY	CAT	exon	9977098	9977263	.	-	.	source_transcript=ENST00000757625.1;source_transcript_name=TTTY7B-214;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757625.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757625.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757625.1,ENST00000757625.1;transcript_id=HG003_chrY_T0001023;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001023;transcript_name=HG003_chrY_T0001023;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001023:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9980682	.	-	.	source_transcript=ENST00000757625.1;source_transcript_name=TTTY7B-214;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757625.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757625.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757625.1,ENST00000757625.1;transcript_id=HG003_chrY_T0001023;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001023;transcript_name=HG003_chrY_T0001023;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001023:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9980683	9980816	.	-	.	source_transcript=ENST00000757625.1;source_transcript_name=TTTY7B-214;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757625.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757625.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757625.1,ENST00000757625.1;transcript_id=HG003_chrY_T0001023;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001023;transcript_name=HG003_chrY_T0001023;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001023:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9980817	9982871	.	-	.	source_transcript=ENST00000757625.1;source_transcript_name=TTTY7B-214;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757625.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757625.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757625.1,ENST00000757625.1;transcript_id=HG003_chrY_T0001023;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001023;transcript_name=HG003_chrY_T0001023;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001023:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9982872	9983029	.	-	.	source_transcript=ENST00000757625.1;source_transcript_name=TTTY7B-214;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757625.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757625.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757625.1,ENST00000757625.1;transcript_id=HG003_chrY_T0001023;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001023;transcript_name=HG003_chrY_T0001023;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001023:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9983030	9984153	.	-	.	source_transcript=ENST00000757625.1;source_transcript_name=TTTY7B-214;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757625.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757625.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757625.1,ENST00000757625.1;transcript_id=HG003_chrY_T0001023;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001023;transcript_name=HG003_chrY_T0001023;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001023:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9984154	9984419	.	-	.	source_transcript=ENST00000757625.1;source_transcript_name=TTTY7B-214;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757625.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757625.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757625.1,ENST00000757625.1;transcript_id=HG003_chrY_T0001023;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001023;transcript_name=HG003_chrY_T0001023;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001023:3;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9977100	9984440	1000	-	.	source_transcript=ENST00000757624.1;source_transcript_name=TTTY7B-213;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757624.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757624.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757624.1,ENST00000757624.1;transcript_id=HG003_chrY_T0001024;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001024;gene_name=TTTY7B;ID=HG003_chrY_T0001024;Name=TTTY7B
HG003_chrY	CAT	exon	9977100	9977263	.	-	.	source_transcript=ENST00000757624.1;source_transcript_name=TTTY7B-213;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757624.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757624.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757624.1,ENST00000757624.1;transcript_id=HG003_chrY_T0001024;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001024;transcript_name=HG003_chrY_T0001024;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001024:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9980179	.	-	.	source_transcript=ENST00000757624.1;source_transcript_name=TTTY7B-213;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757624.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757624.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757624.1,ENST00000757624.1;transcript_id=HG003_chrY_T0001024;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001024;transcript_name=HG003_chrY_T0001024;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001024:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9980180	9980286	.	-	.	source_transcript=ENST00000757624.1;source_transcript_name=TTTY7B-213;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757624.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757624.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757624.1,ENST00000757624.1;transcript_id=HG003_chrY_T0001024;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001024;transcript_name=HG003_chrY_T0001024;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001024:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9980287	9984153	.	-	.	source_transcript=ENST00000757624.1;source_transcript_name=TTTY7B-213;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757624.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757624.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757624.1,ENST00000757624.1;transcript_id=HG003_chrY_T0001024;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001024;transcript_name=HG003_chrY_T0001024;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001024:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9984154	9984440	.	-	.	source_transcript=ENST00000757624.1;source_transcript_name=TTTY7B-213;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757624.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757624.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757624.1,ENST00000757624.1;transcript_id=HG003_chrY_T0001024;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001024;transcript_name=HG003_chrY_T0001024;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001024:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9977101	9986923	1000	-	.	source_transcript=ENST00000757619.1;source_transcript_name=TTTY7B-208;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757619.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757619.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757619.1,ENST00000757619.1;transcript_id=HG003_chrY_T0001025;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001025;gene_name=TTTY7B;ID=HG003_chrY_T0001025;Name=TTTY7B
HG003_chrY	CAT	exon	9977101	9977263	.	-	.	source_transcript=ENST00000757619.1;source_transcript_name=TTTY7B-208;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757619.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757619.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757619.1,ENST00000757619.1;transcript_id=HG003_chrY_T0001025;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001025;transcript_name=HG003_chrY_T0001025;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001025:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9982871	.	-	.	source_transcript=ENST00000757619.1;source_transcript_name=TTTY7B-208;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757619.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757619.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757619.1,ENST00000757619.1;transcript_id=HG003_chrY_T0001025;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001025;transcript_name=HG003_chrY_T0001025;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001025:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9982872	9983029	.	-	.	source_transcript=ENST00000757619.1;source_transcript_name=TTTY7B-208;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757619.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757619.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757619.1,ENST00000757619.1;transcript_id=HG003_chrY_T0001025;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001025;transcript_name=HG003_chrY_T0001025;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001025:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9983030	9986670	.	-	.	source_transcript=ENST00000757619.1;source_transcript_name=TTTY7B-208;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757619.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757619.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757619.1,ENST00000757619.1;transcript_id=HG003_chrY_T0001025;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001025;transcript_name=HG003_chrY_T0001025;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001025:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9986671	9986923	.	-	.	source_transcript=ENST00000757619.1;source_transcript_name=TTTY7B-208;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757619.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757619.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757619.1,ENST00000757619.1;transcript_id=HG003_chrY_T0001025;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001025;transcript_name=HG003_chrY_T0001025;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001025:2;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9977101	9982038	1000	-	.	source_transcript=ENST00000757626.1;source_transcript_name=TTTY7B-215;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757626.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757626.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757626.1,ENST00000757626.1;transcript_id=HG003_chrY_T0001026;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001026;gene_name=TTTY7B;ID=HG003_chrY_T0001026;Name=TTTY7B
HG003_chrY	CAT	exon	9977101	9977263	.	-	.	source_transcript=ENST00000757626.1;source_transcript_name=TTTY7B-215;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757626.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757626.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757626.1,ENST00000757626.1;transcript_id=HG003_chrY_T0001026;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001026;transcript_name=HG003_chrY_T0001026;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001026:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9981736	.	-	.	source_transcript=ENST00000757626.1;source_transcript_name=TTTY7B-215;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757626.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757626.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757626.1,ENST00000757626.1;transcript_id=HG003_chrY_T0001026;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001026;transcript_name=HG003_chrY_T0001026;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001026:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9981737	9982038	.	-	.	source_transcript=ENST00000757626.1;source_transcript_name=TTTY7B-215;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757626.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757626.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757626.1,ENST00000757626.1;transcript_id=HG003_chrY_T0001026;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001026;transcript_name=HG003_chrY_T0001026;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001026:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9977101	9978779	1000	-	.	source_transcript=ENST00000757629.1;source_transcript_name=TTTY7B-218;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757629.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757629.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757629.1,ENST00000757629.1;transcript_id=HG003_chrY_T0001027;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001027;gene_name=TTTY7B;ID=HG003_chrY_T0001027;Name=TTTY7B
HG003_chrY	CAT	exon	9977101	9977263	.	-	.	source_transcript=ENST00000757629.1;source_transcript_name=TTTY7B-218;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757629.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757629.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757629.1,ENST00000757629.1;transcript_id=HG003_chrY_T0001027;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001027;transcript_name=HG003_chrY_T0001027;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001027:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9977264	9977838	.	-	.	source_transcript=ENST00000757629.1;source_transcript_name=TTTY7B-218;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757629.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757629.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757629.1,ENST00000757629.1;transcript_id=HG003_chrY_T0001027;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001027;transcript_name=HG003_chrY_T0001027;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001027:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9977839	9978779	.	-	.	source_transcript=ENST00000757629.1;source_transcript_name=TTTY7B-218;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757629.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757629.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757629.1,ENST00000757629.1;transcript_id=HG003_chrY_T0001027;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001027;transcript_name=HG003_chrY_T0001027;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001027:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9980646	9984419	1000	-	.	source_transcript=ENST00000757628.1;source_transcript_name=TTTY7B-217;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757628.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757628.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757628.1,ENST00000757628.1;transcript_id=HG003_chrY_T0001029;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_G0000336;transcript_name=HG003_chrY_T0001029;gene_name=TTTY7B;ID=HG003_chrY_T0001029;Name=TTTY7B
HG003_chrY	CAT	exon	9980646	9980816	.	-	.	source_transcript=ENST00000757628.1;source_transcript_name=TTTY7B-217;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757628.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757628.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757628.1,ENST00000757628.1;transcript_id=HG003_chrY_T0001029;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001029;transcript_name=HG003_chrY_T0001029;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001029:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9980817	9984153	.	-	.	source_transcript=ENST00000757628.1;source_transcript_name=TTTY7B-217;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757628.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757628.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757628.1,ENST00000757628.1;transcript_id=HG003_chrY_T0001029;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001029;transcript_name=HG003_chrY_T0001029;gene_name=TTTY7B;ID=intron:HG003_chrY_T0001029:0;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9984154	9984419	.	-	.	source_transcript=ENST00000757628.1;source_transcript_name=TTTY7B-217;source_gene=ENSG00000147761.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000147761.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757628.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757628.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY7B;alternative_source_transcripts=ENST00000757628.1,ENST00000757628.1;transcript_id=HG003_chrY_T0001029;gene_id=HG003_chrY_G0000336;Parent=HG003_chrY_T0001029;transcript_name=HG003_chrY_T0001029;gene_name=TTTY7B;ID=exon:HG003_chrY_T0001029:1;Name=TTTY7B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	9980221	10021731	.	+	.	source_gene_common_name=TTTY2;source_gene=ENSG00000212855.6;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;gene_id=HG003_chrY_G0000337;gene_biotype=lncRNA;gene_name=TTTY2;gene_sources=liftoff;ID=HG003_chrY_G0000337;Name=TTTY2
HG003_chrY	CAT	transcript	9980221	10021379	1000	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=HG003_chrY_T0001028;Name=TTTY2
HG003_chrY	CAT	exon	9980221	9980406	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=exon:HG003_chrY_T0001028:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9980407	9981436	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=intron:HG003_chrY_T0001028:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9981437	9982343	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=exon:HG003_chrY_T0001028:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9982344	10005383	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=intron:HG003_chrY_T0001028:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10005384	10005461	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=exon:HG003_chrY_T0001028:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10005462	10015418	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=intron:HG003_chrY_T0001028:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015567	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=exon:HG003_chrY_T0001028:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015568	10016259	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=intron:HG003_chrY_T0001028:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=exon:HG003_chrY_T0001028:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019246	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=intron:HG003_chrY_T0001028:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019247	10019325	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=exon:HG003_chrY_T0001028:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019326	10019445	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=intron:HG003_chrY_T0001028:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=exon:HG003_chrY_T0001028:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=intron:HG003_chrY_T0001028:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021379	.	+	.	source_transcript=ENST00000757459.1;source_transcript_name=TTTY2-202;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757459.1;transcript_score=299.956;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757459.1,ENST00000757459.1;transcript_id=HG003_chrY_T0001028;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001028;transcript_name=HG003_chrY_T0001028;gene_name=TTTY2;ID=exon:HG003_chrY_T0001028:7;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9982127	10021546	1000	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=HG003_chrY_T0001030;Name=TTTY2
HG003_chrY	CAT	exon	9982127	9982343	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=exon:HG003_chrY_T0001030:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9982344	9998647	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=intron:HG003_chrY_T0001030:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9998648	9998858	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=exon:HG003_chrY_T0001030:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9998859	10005383	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=intron:HG003_chrY_T0001030:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10005384	10005461	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=exon:HG003_chrY_T0001030:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10005462	10015418	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=intron:HG003_chrY_T0001030:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015567	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=exon:HG003_chrY_T0001030:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015568	10016259	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=intron:HG003_chrY_T0001030:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=exon:HG003_chrY_T0001030:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019246	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=intron:HG003_chrY_T0001030:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019247	10019325	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=exon:HG003_chrY_T0001030:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019326	10019445	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=intron:HG003_chrY_T0001030:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=exon:HG003_chrY_T0001030:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=intron:HG003_chrY_T0001030:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021546	.	+	.	source_transcript=ENST00000757461.1;source_transcript_name=TTTY2-204;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757461.1,ENST00000757461.1;transcript_id=HG003_chrY_T0001030;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001030;transcript_name=HG003_chrY_T0001030;gene_name=TTTY2;ID=exon:HG003_chrY_T0001030:7;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9982143	10021731	1000	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=HG003_chrY_T0001031;Name=TTTY2
HG003_chrY	CAT	exon	9982143	9982343	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=exon:HG003_chrY_T0001031:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9982344	9998385	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=intron:HG003_chrY_T0001031:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9998386	9998473	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=exon:HG003_chrY_T0001031:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9998474	9998647	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=intron:HG003_chrY_T0001031:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9998648	9998858	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=exon:HG003_chrY_T0001031:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9998859	10005383	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=intron:HG003_chrY_T0001031:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10005384	10005461	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=exon:HG003_chrY_T0001031:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10005462	10007481	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=intron:HG003_chrY_T0001031:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10007482	10007586	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=exon:HG003_chrY_T0001031:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10007587	10007937	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=intron:HG003_chrY_T0001031:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10007938	10008024	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=exon:HG003_chrY_T0001031:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10008025	10015418	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=intron:HG003_chrY_T0001031:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015646	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=exon:HG003_chrY_T0001031:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015647	10016259	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=intron:HG003_chrY_T0001031:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=exon:HG003_chrY_T0001031:7;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019445	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=intron:HG003_chrY_T0001031:7;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=exon:HG003_chrY_T0001031:8;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=intron:HG003_chrY_T0001031:8;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021731	.	+	.	source_transcript=ENST00000757460.1;source_transcript_name=TTTY2-203;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757460.1,ENST00000757460.1;transcript_id=HG003_chrY_T0001031;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001031;transcript_name=HG003_chrY_T0001031;gene_name=TTTY2;ID=exon:HG003_chrY_T0001031:9;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9984574	10021543	1000	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=HG003_chrY_T0001032;Name=TTTY2
HG003_chrY	CAT	exon	9984574	9984758	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=exon:HG003_chrY_T0001032:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9984759	9998385	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=intron:HG003_chrY_T0001032:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9998386	9998473	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=exon:HG003_chrY_T0001032:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9998474	9998647	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=intron:HG003_chrY_T0001032:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	9998648	9998858	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=exon:HG003_chrY_T0001032:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9998859	10005383	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=intron:HG003_chrY_T0001032:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10005384	10005461	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=exon:HG003_chrY_T0001032:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10005462	10015418	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=intron:HG003_chrY_T0001032:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015567	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=exon:HG003_chrY_T0001032:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015568	10016259	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=intron:HG003_chrY_T0001032:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=exon:HG003_chrY_T0001032:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019445	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=intron:HG003_chrY_T0001032:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=exon:HG003_chrY_T0001032:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=intron:HG003_chrY_T0001032:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021543	.	+	.	source_transcript=ENST00000757462.1;source_transcript_name=TTTY2-205;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757462.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757462.1,ENST00000757462.1;transcript_id=HG003_chrY_T0001032;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001032;transcript_name=HG003_chrY_T0001032;gene_name=TTTY2;ID=exon:HG003_chrY_T0001032:7;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9999338	10021731	1000	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=HG003_chrY_T0001033;Name=TTTY2
HG003_chrY	CAT	exon	9999338	9999549	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=exon:HG003_chrY_T0001033:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9999550	10005383	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=intron:HG003_chrY_T0001033:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10005384	10005461	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=exon:HG003_chrY_T0001033:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10005462	10007481	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=intron:HG003_chrY_T0001033:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10007482	10007586	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=exon:HG003_chrY_T0001033:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10007587	10007937	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=intron:HG003_chrY_T0001033:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10007938	10008024	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=exon:HG003_chrY_T0001033:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10008025	10015418	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=intron:HG003_chrY_T0001033:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015567	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=exon:HG003_chrY_T0001033:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015568	10016259	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=intron:HG003_chrY_T0001033:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=exon:HG003_chrY_T0001033:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019445	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=intron:HG003_chrY_T0001033:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=exon:HG003_chrY_T0001033:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=intron:HG003_chrY_T0001033:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021731	.	+	.	source_transcript=ENST00000757463.1;source_transcript_name=TTTY2-206;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757463.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757463.1,ENST00000757463.1;transcript_id=HG003_chrY_T0001033;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001033;transcript_name=HG003_chrY_T0001033;gene_name=TTTY2;ID=exon:HG003_chrY_T0001033:7;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9999339	10021731	1000	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=HG003_chrY_T0001034;Name=TTTY2
HG003_chrY	CAT	exon	9999339	9999543	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=exon:HG003_chrY_T0001034:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9999544	10005383	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=intron:HG003_chrY_T0001034:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10005384	10005461	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=exon:HG003_chrY_T0001034:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10005462	10015418	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=intron:HG003_chrY_T0001034:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015646	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=exon:HG003_chrY_T0001034:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015647	10016259	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=intron:HG003_chrY_T0001034:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=exon:HG003_chrY_T0001034:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10016937	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=intron:HG003_chrY_T0001034:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016938	10017032	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=exon:HG003_chrY_T0001034:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10017033	10017395	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=intron:HG003_chrY_T0001034:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10017396	10017613	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=exon:HG003_chrY_T0001034:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10017614	10019246	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=intron:HG003_chrY_T0001034:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019247	10019325	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=exon:HG003_chrY_T0001034:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019326	10019445	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=intron:HG003_chrY_T0001034:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=exon:HG003_chrY_T0001034:7;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=intron:HG003_chrY_T0001034:7;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021731	.	+	.	source_transcript=ENST00000757464.1;source_transcript_name=TTTY2-207;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757464.1,ENST00000757464.1;transcript_id=HG003_chrY_T0001034;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001034;transcript_name=HG003_chrY_T0001034;gene_name=TTTY2;ID=exon:HG003_chrY_T0001034:8;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9999339	10021731	1000	+	.	source_transcript=ENST00000757465.1;source_transcript_name=TTTY2-208;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757465.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757465.1,ENST00000757465.1;transcript_id=HG003_chrY_T0001035;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001035;gene_name=TTTY2;ID=HG003_chrY_T0001035;Name=TTTY2
HG003_chrY	CAT	exon	9999339	9999549	.	+	.	source_transcript=ENST00000757465.1;source_transcript_name=TTTY2-208;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757465.1,ENST00000757465.1;transcript_id=HG003_chrY_T0001035;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001035;transcript_name=HG003_chrY_T0001035;gene_name=TTTY2;ID=exon:HG003_chrY_T0001035:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9999550	10005383	.	+	.	source_transcript=ENST00000757465.1;source_transcript_name=TTTY2-208;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757465.1,ENST00000757465.1;transcript_id=HG003_chrY_T0001035;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001035;transcript_name=HG003_chrY_T0001035;gene_name=TTTY2;ID=intron:HG003_chrY_T0001035:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10005384	10005461	.	+	.	source_transcript=ENST00000757465.1;source_transcript_name=TTTY2-208;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757465.1,ENST00000757465.1;transcript_id=HG003_chrY_T0001035;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001035;transcript_name=HG003_chrY_T0001035;gene_name=TTTY2;ID=exon:HG003_chrY_T0001035:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10005462	10015418	.	+	.	source_transcript=ENST00000757465.1;source_transcript_name=TTTY2-208;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757465.1,ENST00000757465.1;transcript_id=HG003_chrY_T0001035;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001035;transcript_name=HG003_chrY_T0001035;gene_name=TTTY2;ID=intron:HG003_chrY_T0001035:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015567	.	+	.	source_transcript=ENST00000757465.1;source_transcript_name=TTTY2-208;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757465.1,ENST00000757465.1;transcript_id=HG003_chrY_T0001035;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001035;transcript_name=HG003_chrY_T0001035;gene_name=TTTY2;ID=exon:HG003_chrY_T0001035:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015568	10016259	.	+	.	source_transcript=ENST00000757465.1;source_transcript_name=TTTY2-208;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757465.1,ENST00000757465.1;transcript_id=HG003_chrY_T0001035;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001035;transcript_name=HG003_chrY_T0001035;gene_name=TTTY2;ID=intron:HG003_chrY_T0001035:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757465.1;source_transcript_name=TTTY2-208;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757465.1,ENST00000757465.1;transcript_id=HG003_chrY_T0001035;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001035;transcript_name=HG003_chrY_T0001035;gene_name=TTTY2;ID=exon:HG003_chrY_T0001035:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019445	.	+	.	source_transcript=ENST00000757465.1;source_transcript_name=TTTY2-208;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757465.1,ENST00000757465.1;transcript_id=HG003_chrY_T0001035;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001035;transcript_name=HG003_chrY_T0001035;gene_name=TTTY2;ID=intron:HG003_chrY_T0001035:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757465.1;source_transcript_name=TTTY2-208;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757465.1,ENST00000757465.1;transcript_id=HG003_chrY_T0001035;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001035;transcript_name=HG003_chrY_T0001035;gene_name=TTTY2;ID=exon:HG003_chrY_T0001035:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757465.1;source_transcript_name=TTTY2-208;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757465.1,ENST00000757465.1;transcript_id=HG003_chrY_T0001035;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001035;transcript_name=HG003_chrY_T0001035;gene_name=TTTY2;ID=intron:HG003_chrY_T0001035:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021731	.	+	.	source_transcript=ENST00000757465.1;source_transcript_name=TTTY2-208;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757465.1,ENST00000757465.1;transcript_id=HG003_chrY_T0001035;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001035;transcript_name=HG003_chrY_T0001035;gene_name=TTTY2;ID=exon:HG003_chrY_T0001035:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9999351	10021731	1000	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=HG003_chrY_T0001036;Name=TTTY2
HG003_chrY	CAT	exon	9999351	9999549	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=exon:HG003_chrY_T0001036:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9999550	10005383	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=intron:HG003_chrY_T0001036:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10005384	10005461	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=exon:HG003_chrY_T0001036:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10005462	10007937	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=intron:HG003_chrY_T0001036:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10007938	10008024	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=exon:HG003_chrY_T0001036:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10008025	10015418	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=intron:HG003_chrY_T0001036:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015567	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=exon:HG003_chrY_T0001036:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015568	10016259	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=intron:HG003_chrY_T0001036:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=exon:HG003_chrY_T0001036:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019246	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=intron:HG003_chrY_T0001036:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019247	10019325	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=exon:HG003_chrY_T0001036:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019326	10019445	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=intron:HG003_chrY_T0001036:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=exon:HG003_chrY_T0001036:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=intron:HG003_chrY_T0001036:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021731	.	+	.	source_transcript=ENST00000757466.1;source_transcript_name=TTTY2-209;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757466.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757466.1,ENST00000757466.1;transcript_id=HG003_chrY_T0001036;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001036;transcript_name=HG003_chrY_T0001036;gene_name=TTTY2;ID=exon:HG003_chrY_T0001036:7;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9999351	10021542	1000	+	.	source_transcript=ENST00000757467.1;source_transcript_name=TTTY2-210;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757467.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757467.1,ENST00000757467.1;transcript_id=HG003_chrY_T0001037;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001037;gene_name=TTTY2;ID=HG003_chrY_T0001037;Name=TTTY2
HG003_chrY	CAT	exon	9999351	9999549	.	+	.	source_transcript=ENST00000757467.1;source_transcript_name=TTTY2-210;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757467.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757467.1,ENST00000757467.1;transcript_id=HG003_chrY_T0001037;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001037;transcript_name=HG003_chrY_T0001037;gene_name=TTTY2;ID=exon:HG003_chrY_T0001037:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9999550	10005383	.	+	.	source_transcript=ENST00000757467.1;source_transcript_name=TTTY2-210;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757467.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757467.1,ENST00000757467.1;transcript_id=HG003_chrY_T0001037;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001037;transcript_name=HG003_chrY_T0001037;gene_name=TTTY2;ID=intron:HG003_chrY_T0001037:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10005384	10005461	.	+	.	source_transcript=ENST00000757467.1;source_transcript_name=TTTY2-210;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757467.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757467.1,ENST00000757467.1;transcript_id=HG003_chrY_T0001037;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001037;transcript_name=HG003_chrY_T0001037;gene_name=TTTY2;ID=exon:HG003_chrY_T0001037:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10005462	10015418	.	+	.	source_transcript=ENST00000757467.1;source_transcript_name=TTTY2-210;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757467.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757467.1,ENST00000757467.1;transcript_id=HG003_chrY_T0001037;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001037;transcript_name=HG003_chrY_T0001037;gene_name=TTTY2;ID=intron:HG003_chrY_T0001037:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015646	.	+	.	source_transcript=ENST00000757467.1;source_transcript_name=TTTY2-210;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757467.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757467.1,ENST00000757467.1;transcript_id=HG003_chrY_T0001037;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001037;transcript_name=HG003_chrY_T0001037;gene_name=TTTY2;ID=exon:HG003_chrY_T0001037:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015647	10016259	.	+	.	source_transcript=ENST00000757467.1;source_transcript_name=TTTY2-210;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757467.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757467.1,ENST00000757467.1;transcript_id=HG003_chrY_T0001037;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001037;transcript_name=HG003_chrY_T0001037;gene_name=TTTY2;ID=intron:HG003_chrY_T0001037:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757467.1;source_transcript_name=TTTY2-210;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757467.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757467.1,ENST00000757467.1;transcript_id=HG003_chrY_T0001037;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001037;transcript_name=HG003_chrY_T0001037;gene_name=TTTY2;ID=exon:HG003_chrY_T0001037:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019445	.	+	.	source_transcript=ENST00000757467.1;source_transcript_name=TTTY2-210;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757467.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757467.1,ENST00000757467.1;transcript_id=HG003_chrY_T0001037;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001037;transcript_name=HG003_chrY_T0001037;gene_name=TTTY2;ID=intron:HG003_chrY_T0001037:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757467.1;source_transcript_name=TTTY2-210;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757467.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757467.1,ENST00000757467.1;transcript_id=HG003_chrY_T0001037;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001037;transcript_name=HG003_chrY_T0001037;gene_name=TTTY2;ID=exon:HG003_chrY_T0001037:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757467.1;source_transcript_name=TTTY2-210;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757467.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757467.1,ENST00000757467.1;transcript_id=HG003_chrY_T0001037;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001037;transcript_name=HG003_chrY_T0001037;gene_name=TTTY2;ID=intron:HG003_chrY_T0001037:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021542	.	+	.	source_transcript=ENST00000757467.1;source_transcript_name=TTTY2-210;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757467.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757467.1,ENST00000757467.1;transcript_id=HG003_chrY_T0001037;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001037;transcript_name=HG003_chrY_T0001037;gene_name=TTTY2;ID=exon:HG003_chrY_T0001037:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	9999360	10021011	1000	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=HG003_chrY_T0001038;Name=TTTY2
HG003_chrY	CAT	exon	9999360	9999549	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=exon:HG003_chrY_T0001038:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	9999550	10005383	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=intron:HG003_chrY_T0001038:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10005384	10005461	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=exon:HG003_chrY_T0001038:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10005462	10007937	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=intron:HG003_chrY_T0001038:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10007938	10008024	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=exon:HG003_chrY_T0001038:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10008025	10015418	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=intron:HG003_chrY_T0001038:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015646	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=exon:HG003_chrY_T0001038:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015647	10016259	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=intron:HG003_chrY_T0001038:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=exon:HG003_chrY_T0001038:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019445	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=intron:HG003_chrY_T0001038:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=exon:HG003_chrY_T0001038:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=intron:HG003_chrY_T0001038:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021011	.	+	.	source_transcript=ENST00000757468.1;source_transcript_name=TTTY2-211;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757468.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757468.1,ENST00000757468.1;transcript_id=HG003_chrY_T0001038;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001038;transcript_name=HG003_chrY_T0001038;gene_name=TTTY2;ID=exon:HG003_chrY_T0001038:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10003644	10021546	1000	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=HG003_chrY_T0001039;Name=TTTY2
HG003_chrY	CAT	exon	10003644	10005461	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=exon:HG003_chrY_T0001039:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10005462	10007937	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=intron:HG003_chrY_T0001039:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10007938	10008024	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=exon:HG003_chrY_T0001039:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10008025	10015418	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=intron:HG003_chrY_T0001039:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015567	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=exon:HG003_chrY_T0001039:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015568	10016259	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=intron:HG003_chrY_T0001039:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=exon:HG003_chrY_T0001039:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019246	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=intron:HG003_chrY_T0001039:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019247	10019325	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=exon:HG003_chrY_T0001039:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019326	10019445	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=intron:HG003_chrY_T0001039:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=exon:HG003_chrY_T0001039:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=intron:HG003_chrY_T0001039:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021546	.	+	.	source_transcript=ENST00000417072.1;source_transcript_name=TTTY2-201;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417072.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000417072.1;transcript_id=HG003_chrY_T0001039;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001039;transcript_name=HG003_chrY_T0001039;gene_name=TTTY2;ID=exon:HG003_chrY_T0001039:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10013163	10016507	1000	+	.	source_transcript=ENST00000757472.1;source_transcript_name=TTTY2-215;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757472.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757472.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757472.1;transcript_id=HG003_chrY_T0001040;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001040;gene_name=TTTY2;ID=HG003_chrY_T0001040;Name=TTTY2
HG003_chrY	CAT	exon	10013163	10013306	.	+	.	source_transcript=ENST00000757472.1;source_transcript_name=TTTY2-215;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757472.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757472.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757472.1;transcript_id=HG003_chrY_T0001040;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001040;transcript_name=HG003_chrY_T0001040;gene_name=TTTY2;ID=exon:HG003_chrY_T0001040:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10013307	10015039	.	+	.	source_transcript=ENST00000757472.1;source_transcript_name=TTTY2-215;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757472.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757472.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757472.1;transcript_id=HG003_chrY_T0001040;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001040;transcript_name=HG003_chrY_T0001040;gene_name=TTTY2;ID=intron:HG003_chrY_T0001040:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015040	10015126	.	+	.	source_transcript=ENST00000757472.1;source_transcript_name=TTTY2-215;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757472.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757472.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757472.1;transcript_id=HG003_chrY_T0001040;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001040;transcript_name=HG003_chrY_T0001040;gene_name=TTTY2;ID=exon:HG003_chrY_T0001040:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015127	10015418	.	+	.	source_transcript=ENST00000757472.1;source_transcript_name=TTTY2-215;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757472.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757472.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757472.1;transcript_id=HG003_chrY_T0001040;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001040;transcript_name=HG003_chrY_T0001040;gene_name=TTTY2;ID=intron:HG003_chrY_T0001040:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015567	.	+	.	source_transcript=ENST00000757472.1;source_transcript_name=TTTY2-215;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757472.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757472.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757472.1;transcript_id=HG003_chrY_T0001040;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001040;transcript_name=HG003_chrY_T0001040;gene_name=TTTY2;ID=exon:HG003_chrY_T0001040:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015568	10016259	.	+	.	source_transcript=ENST00000757472.1;source_transcript_name=TTTY2-215;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757472.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757472.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757472.1;transcript_id=HG003_chrY_T0001040;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001040;transcript_name=HG003_chrY_T0001040;gene_name=TTTY2;ID=intron:HG003_chrY_T0001040:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016507	.	+	.	source_transcript=ENST00000757472.1;source_transcript_name=TTTY2-215;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757472.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757472.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757472.1;transcript_id=HG003_chrY_T0001040;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001040;transcript_name=HG003_chrY_T0001040;gene_name=TTTY2;ID=exon:HG003_chrY_T0001040:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10013170	10021731	1000	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=HG003_chrY_T0001041;Name=TTTY2
HG003_chrY	CAT	exon	10013170	10013306	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=exon:HG003_chrY_T0001041:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10013307	10015039	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=intron:HG003_chrY_T0001041:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015040	10015126	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=exon:HG003_chrY_T0001041:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015127	10015418	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=intron:HG003_chrY_T0001041:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015567	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=exon:HG003_chrY_T0001041:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015568	10016259	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=intron:HG003_chrY_T0001041:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=exon:HG003_chrY_T0001041:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10017395	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=intron:HG003_chrY_T0001041:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10017396	10017613	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=exon:HG003_chrY_T0001041:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10017614	10019246	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=intron:HG003_chrY_T0001041:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019247	10019325	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=exon:HG003_chrY_T0001041:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019326	10019445	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=intron:HG003_chrY_T0001041:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=exon:HG003_chrY_T0001041:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=intron:HG003_chrY_T0001041:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021731	.	+	.	source_transcript=ENST00000757469.1;source_transcript_name=TTTY2-212;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757469.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757469.1;transcript_id=HG003_chrY_T0001041;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001041;transcript_name=HG003_chrY_T0001041;gene_name=TTTY2;ID=exon:HG003_chrY_T0001041:7;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10013173	10021013	1000	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=HG003_chrY_T0001042;Name=TTTY2
HG003_chrY	CAT	exon	10013173	10013300	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=exon:HG003_chrY_T0001042:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10013301	10015039	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=intron:HG003_chrY_T0001042:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015040	10015126	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=exon:HG003_chrY_T0001042:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015127	10015418	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=intron:HG003_chrY_T0001042:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015567	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=exon:HG003_chrY_T0001042:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015568	10016259	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=intron:HG003_chrY_T0001042:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=exon:HG003_chrY_T0001042:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019246	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=intron:HG003_chrY_T0001042:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019247	10019325	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=exon:HG003_chrY_T0001042:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019326	10019445	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=intron:HG003_chrY_T0001042:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=exon:HG003_chrY_T0001042:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=intron:HG003_chrY_T0001042:5;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021013	.	+	.	source_transcript=ENST00000757471.1;source_transcript_name=TTTY2-214;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757471.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757471.1;transcript_id=HG003_chrY_T0001042;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001042;transcript_name=HG003_chrY_T0001042;gene_name=TTTY2;ID=exon:HG003_chrY_T0001042:6;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10013180	10021542	1000	+	.	source_transcript=ENST00000757470.1;source_transcript_name=TTTY2-213;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757470.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757470.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757470.1;transcript_id=HG003_chrY_T0001043;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_G0000337;transcript_name=HG003_chrY_T0001043;gene_name=TTTY2;ID=HG003_chrY_T0001043;Name=TTTY2
HG003_chrY	CAT	exon	10013180	10013306	.	+	.	source_transcript=ENST00000757470.1;source_transcript_name=TTTY2-213;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757470.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757470.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757470.1;transcript_id=HG003_chrY_T0001043;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001043;transcript_name=HG003_chrY_T0001043;gene_name=TTTY2;ID=exon:HG003_chrY_T0001043:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10013307	10015418	.	+	.	source_transcript=ENST00000757470.1;source_transcript_name=TTTY2-213;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757470.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757470.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757470.1;transcript_id=HG003_chrY_T0001043;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001043;transcript_name=HG003_chrY_T0001043;gene_name=TTTY2;ID=intron:HG003_chrY_T0001043:0;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10015419	10015567	.	+	.	source_transcript=ENST00000757470.1;source_transcript_name=TTTY2-213;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757470.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757470.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757470.1;transcript_id=HG003_chrY_T0001043;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001043;transcript_name=HG003_chrY_T0001043;gene_name=TTTY2;ID=exon:HG003_chrY_T0001043:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10015568	10016259	.	+	.	source_transcript=ENST00000757470.1;source_transcript_name=TTTY2-213;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757470.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757470.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757470.1;transcript_id=HG003_chrY_T0001043;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001043;transcript_name=HG003_chrY_T0001043;gene_name=TTTY2;ID=intron:HG003_chrY_T0001043:1;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10016260	10016416	.	+	.	source_transcript=ENST00000757470.1;source_transcript_name=TTTY2-213;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757470.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757470.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757470.1;transcript_id=HG003_chrY_T0001043;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001043;transcript_name=HG003_chrY_T0001043;gene_name=TTTY2;ID=exon:HG003_chrY_T0001043:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016417	10019445	.	+	.	source_transcript=ENST00000757470.1;source_transcript_name=TTTY2-213;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757470.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757470.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757470.1;transcript_id=HG003_chrY_T0001043;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001043;transcript_name=HG003_chrY_T0001043;gene_name=TTTY2;ID=intron:HG003_chrY_T0001043:2;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10019446	10019643	.	+	.	source_transcript=ENST00000757470.1;source_transcript_name=TTTY2-213;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757470.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757470.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757470.1;transcript_id=HG003_chrY_T0001043;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001043;transcript_name=HG003_chrY_T0001043;gene_name=TTTY2;ID=exon:HG003_chrY_T0001043:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10019644	10020866	.	+	.	source_transcript=ENST00000757470.1;source_transcript_name=TTTY2-213;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757470.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757470.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757470.1;transcript_id=HG003_chrY_T0001043;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001043;transcript_name=HG003_chrY_T0001043;gene_name=TTTY2;ID=intron:HG003_chrY_T0001043:3;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10020867	10021542	.	+	.	source_transcript=ENST00000757470.1;source_transcript_name=TTTY2-213;source_gene=ENSG00000212855.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000212855.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000757470.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000757470.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY2;alternative_source_transcripts=ENST00000757470.1;transcript_id=HG003_chrY_T0001043;gene_id=HG003_chrY_G0000337;Parent=HG003_chrY_T0001043;transcript_name=HG003_chrY_T0001043;gene_name=TTTY2;ID=exon:HG003_chrY_T0001043:4;Name=TTTY2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10016226	10037402	.	-	.	source_gene_common_name=TTTY1B;source_gene=ENSG00000129816.6;alternative_source_transcripts=ENST00000250805.5,ENST00000250805.5;gene_id=HG003_chrY_G0000338;gene_biotype=lncRNA;gene_name=TTTY1B;gene_sources=liftoff;ID=HG003_chrY_G0000338;Name=TTTY1B
HG003_chrY	CAT	transcript	10016226	10037361	1000	-	.	source_transcript=ENST00000250776.5;source_transcript_name=TTTY1B-201;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250776.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250776.5;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=ENST00000250805.5,ENST00000250805.5;transcript_id=HG003_chrY_T0001044;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_G0000338;transcript_name=HG003_chrY_T0001044;gene_name=TTTY1B;ID=HG003_chrY_T0001044;Name=TTTY1B
HG003_chrY	CAT	exon	10016226	10016483	.	-	.	source_transcript=ENST00000250776.5;source_transcript_name=TTTY1B-201;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250776.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250776.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=ENST00000250805.5,ENST00000250805.5;transcript_id=HG003_chrY_T0001044;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001044;transcript_name=HG003_chrY_T0001044;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001044:0;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016484	10024064	.	-	.	source_transcript=ENST00000250776.5;source_transcript_name=TTTY1B-201;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250776.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250776.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=ENST00000250805.5,ENST00000250805.5;transcript_id=HG003_chrY_T0001044;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001044;transcript_name=HG003_chrY_T0001044;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001044:0;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10024065	10024202	.	-	.	source_transcript=ENST00000250776.5;source_transcript_name=TTTY1B-201;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250776.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250776.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=ENST00000250805.5,ENST00000250805.5;transcript_id=HG003_chrY_T0001044;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001044;transcript_name=HG003_chrY_T0001044;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001044:1;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10024203	10026558	.	-	.	source_transcript=ENST00000250776.5;source_transcript_name=TTTY1B-201;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250776.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250776.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=ENST00000250805.5,ENST00000250805.5;transcript_id=HG003_chrY_T0001044;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001044;transcript_name=HG003_chrY_T0001044;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001044:1;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10026559	10026667	.	-	.	source_transcript=ENST00000250776.5;source_transcript_name=TTTY1B-201;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250776.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250776.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=ENST00000250805.5,ENST00000250805.5;transcript_id=HG003_chrY_T0001044;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001044;transcript_name=HG003_chrY_T0001044;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001044:2;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10026668	10033532	.	-	.	source_transcript=ENST00000250776.5;source_transcript_name=TTTY1B-201;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250776.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250776.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=ENST00000250805.5,ENST00000250805.5;transcript_id=HG003_chrY_T0001044;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001044;transcript_name=HG003_chrY_T0001044;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001044:2;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10033533	10033692	.	-	.	source_transcript=ENST00000250776.5;source_transcript_name=TTTY1B-201;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250776.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250776.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=ENST00000250805.5,ENST00000250805.5;transcript_id=HG003_chrY_T0001044;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001044;transcript_name=HG003_chrY_T0001044;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001044:3;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10033693	10037116	.	-	.	source_transcript=ENST00000250776.5;source_transcript_name=TTTY1B-201;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250776.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250776.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=ENST00000250805.5,ENST00000250805.5;transcript_id=HG003_chrY_T0001044;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001044;transcript_name=HG003_chrY_T0001044;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001044:3;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10037117	10037361	.	-	.	source_transcript=ENST00000250776.5;source_transcript_name=TTTY1B-201;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000250776.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250776.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;alternative_source_transcripts=ENST00000250805.5,ENST00000250805.5;transcript_id=HG003_chrY_T0001044;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001044;transcript_name=HG003_chrY_T0001044;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001044:4;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10016226	10037374	1000	-	.	source_transcript=ENST00000735677.1;source_transcript_name=TTTY1B-202;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735677.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001045;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_G0000338;transcript_name=HG003_chrY_T0001045;gene_name=TTTY1B;ID=HG003_chrY_T0001045;Name=TTTY1B
HG003_chrY	CAT	exon	10016226	10016483	.	-	.	source_transcript=ENST00000735677.1;source_transcript_name=TTTY1B-202;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735677.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001045;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001045;transcript_name=HG003_chrY_T0001045;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001045:0;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10016484	10018813	.	-	.	source_transcript=ENST00000735677.1;source_transcript_name=TTTY1B-202;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735677.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001045;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001045;transcript_name=HG003_chrY_T0001045;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001045:0;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10018814	10018957	.	-	.	source_transcript=ENST00000735677.1;source_transcript_name=TTTY1B-202;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735677.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001045;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001045;transcript_name=HG003_chrY_T0001045;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001045:1;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10018958	10024064	.	-	.	source_transcript=ENST00000735677.1;source_transcript_name=TTTY1B-202;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735677.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001045;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001045;transcript_name=HG003_chrY_T0001045;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001045:1;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10024065	10024202	.	-	.	source_transcript=ENST00000735677.1;source_transcript_name=TTTY1B-202;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735677.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001045;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001045;transcript_name=HG003_chrY_T0001045;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001045:2;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10024203	10024850	.	-	.	source_transcript=ENST00000735677.1;source_transcript_name=TTTY1B-202;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735677.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001045;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001045;transcript_name=HG003_chrY_T0001045;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001045:2;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10024851	10024937	.	-	.	source_transcript=ENST00000735677.1;source_transcript_name=TTTY1B-202;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735677.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001045;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001045;transcript_name=HG003_chrY_T0001045;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001045:3;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10024938	10026508	.	-	.	source_transcript=ENST00000735677.1;source_transcript_name=TTTY1B-202;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735677.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001045;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001045;transcript_name=HG003_chrY_T0001045;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001045:3;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10026509	10026667	.	-	.	source_transcript=ENST00000735677.1;source_transcript_name=TTTY1B-202;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735677.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001045;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001045;transcript_name=HG003_chrY_T0001045;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001045:4;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10026668	10037116	.	-	.	source_transcript=ENST00000735677.1;source_transcript_name=TTTY1B-202;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735677.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001045;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001045;transcript_name=HG003_chrY_T0001045;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001045:4;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10037117	10037374	.	-	.	source_transcript=ENST00000735677.1;source_transcript_name=TTTY1B-202;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735677.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735677.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001045;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001045;transcript_name=HG003_chrY_T0001045;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001045:5;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10022219	10037374	1000	-	.	source_transcript=ENST00000735680.1;source_transcript_name=TTTY1B-204;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735680.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001046;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_G0000338;transcript_name=HG003_chrY_T0001046;gene_name=TTTY1B;ID=HG003_chrY_T0001046;Name=TTTY1B
HG003_chrY	CAT	exon	10022219	10022383	.	-	.	source_transcript=ENST00000735680.1;source_transcript_name=TTTY1B-204;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001046;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001046;transcript_name=HG003_chrY_T0001046;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001046:0;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10022384	10026508	.	-	.	source_transcript=ENST00000735680.1;source_transcript_name=TTTY1B-204;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001046;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001046;transcript_name=HG003_chrY_T0001046;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001046:0;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10026509	10026667	.	-	.	source_transcript=ENST00000735680.1;source_transcript_name=TTTY1B-204;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001046;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001046;transcript_name=HG003_chrY_T0001046;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001046:1;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10026668	10037116	.	-	.	source_transcript=ENST00000735680.1;source_transcript_name=TTTY1B-204;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001046;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001046;transcript_name=HG003_chrY_T0001046;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001046:1;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10037117	10037374	.	-	.	source_transcript=ENST00000735680.1;source_transcript_name=TTTY1B-204;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001046;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001046;transcript_name=HG003_chrY_T0001046;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001046:2;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10022226	10037402	1000	-	.	source_transcript=ENST00000735679.1;source_transcript_name=TTTY1B-203;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735679.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001047;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_G0000338;transcript_name=HG003_chrY_T0001047;gene_name=TTTY1B;ID=HG003_chrY_T0001047;Name=TTTY1B
HG003_chrY	CAT	exon	10022226	10022383	.	-	.	source_transcript=ENST00000735679.1;source_transcript_name=TTTY1B-203;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735679.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001047;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001047;transcript_name=HG003_chrY_T0001047;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001047:0;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10022384	10026508	.	-	.	source_transcript=ENST00000735679.1;source_transcript_name=TTTY1B-203;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735679.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001047;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001047;transcript_name=HG003_chrY_T0001047;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001047:0;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10026509	10026667	.	-	.	source_transcript=ENST00000735679.1;source_transcript_name=TTTY1B-203;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735679.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001047;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001047;transcript_name=HG003_chrY_T0001047;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001047:1;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10026668	10033532	.	-	.	source_transcript=ENST00000735679.1;source_transcript_name=TTTY1B-203;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735679.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001047;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001047;transcript_name=HG003_chrY_T0001047;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001047:1;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10033533	10033692	.	-	.	source_transcript=ENST00000735679.1;source_transcript_name=TTTY1B-203;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735679.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001047;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001047;transcript_name=HG003_chrY_T0001047;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001047:2;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10033693	10037116	.	-	.	source_transcript=ENST00000735679.1;source_transcript_name=TTTY1B-203;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735679.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001047;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001047;transcript_name=HG003_chrY_T0001047;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001047:2;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10037117	10037402	.	-	.	source_transcript=ENST00000735679.1;source_transcript_name=TTTY1B-203;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735679.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001047;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001047;transcript_name=HG003_chrY_T0001047;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001047:3;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10031083	10037356	1000	-	.	source_transcript=ENST00000735682.1;source_transcript_name=TTTY1B-205;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735682.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001048;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_G0000338;transcript_name=HG003_chrY_T0001048;gene_name=TTTY1B;ID=HG003_chrY_T0001048;Name=TTTY1B
HG003_chrY	CAT	exon	10031083	10031330	.	-	.	source_transcript=ENST00000735682.1;source_transcript_name=TTTY1B-205;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735682.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001048;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001048;transcript_name=HG003_chrY_T0001048;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001048:0;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10031331	10037116	.	-	.	source_transcript=ENST00000735682.1;source_transcript_name=TTTY1B-205;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735682.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001048;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001048;transcript_name=HG003_chrY_T0001048;gene_name=TTTY1B;ID=intron:HG003_chrY_T0001048:0;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10037117	10037356	.	-	.	source_transcript=ENST00000735682.1;source_transcript_name=TTTY1B-205;source_gene=ENSG00000129816.6;source_gene_biotype=lncRNA;original_gene_id=ENSG00000129816.6;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735682.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735682.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY1B;transcript_id=HG003_chrY_T0001048;gene_id=HG003_chrY_G0000338;Parent=HG003_chrY_T0001048;transcript_name=HG003_chrY_T0001048;gene_name=TTTY1B;ID=exon:HG003_chrY_T0001048:1;Name=TTTY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10046659	10053148	.	+	.	source_gene_common_name=ENSG00000303345;source_gene=ENSG00000303345.1;gene_id=HG003_chrY_G0000339;gene_biotype=lncRNA;gene_name=ENSG00000303345;gene_sources=liftoff;ID=HG003_chrY_G0000339;Name=ENSG00000303345
HG003_chrY	CAT	transcript	10046659	10053148	1000	+	.	source_transcript=ENST00000793817.1;source_transcript_name=ENST00000793817;source_gene=ENSG00000303345.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303345.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793817.1;transcript_score=299.854;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303345;transcript_id=HG003_chrY_T0001049;gene_id=HG003_chrY_G0000339;Parent=HG003_chrY_G0000339;transcript_name=HG003_chrY_T0001049;gene_name=ENSG00000303345;ID=HG003_chrY_T0001049;Name=ENSG00000303345
HG003_chrY	CAT	exon	10046659	10046714	.	+	.	source_transcript=ENST00000793817.1;source_transcript_name=ENST00000793817;source_gene=ENSG00000303345.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303345.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793817.1;transcript_score=299.854;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303345;transcript_id=HG003_chrY_T0001049;gene_id=HG003_chrY_G0000339;Parent=HG003_chrY_T0001049;transcript_name=HG003_chrY_T0001049;gene_name=ENSG00000303345;ID=exon:HG003_chrY_T0001049:0;Name=ENSG00000303345;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10046715	10046917	.	+	.	source_transcript=ENST00000793817.1;source_transcript_name=ENST00000793817;source_gene=ENSG00000303345.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303345.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793817.1;transcript_score=299.854;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303345;transcript_id=HG003_chrY_T0001049;gene_id=HG003_chrY_G0000339;Parent=HG003_chrY_T0001049;transcript_name=HG003_chrY_T0001049;gene_name=ENSG00000303345;ID=intron:HG003_chrY_T0001049:0;Name=ENSG00000303345;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10046918	10047004	.	+	.	source_transcript=ENST00000793817.1;source_transcript_name=ENST00000793817;source_gene=ENSG00000303345.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303345.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793817.1;transcript_score=299.854;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303345;transcript_id=HG003_chrY_T0001049;gene_id=HG003_chrY_G0000339;Parent=HG003_chrY_T0001049;transcript_name=HG003_chrY_T0001049;gene_name=ENSG00000303345;ID=exon:HG003_chrY_T0001049:1;Name=ENSG00000303345;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10047005	10050367	.	+	.	source_transcript=ENST00000793817.1;source_transcript_name=ENST00000793817;source_gene=ENSG00000303345.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303345.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793817.1;transcript_score=299.854;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303345;transcript_id=HG003_chrY_T0001049;gene_id=HG003_chrY_G0000339;Parent=HG003_chrY_T0001049;transcript_name=HG003_chrY_T0001049;gene_name=ENSG00000303345;ID=intron:HG003_chrY_T0001049:1;Name=ENSG00000303345;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10050368	10050523	.	+	.	source_transcript=ENST00000793817.1;source_transcript_name=ENST00000793817;source_gene=ENSG00000303345.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303345.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793817.1;transcript_score=299.854;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303345;transcript_id=HG003_chrY_T0001049;gene_id=HG003_chrY_G0000339;Parent=HG003_chrY_T0001049;transcript_name=HG003_chrY_T0001049;gene_name=ENSG00000303345;ID=exon:HG003_chrY_T0001049:2;Name=ENSG00000303345;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10050524	10052764	.	+	.	source_transcript=ENST00000793817.1;source_transcript_name=ENST00000793817;source_gene=ENSG00000303345.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303345.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793817.1;transcript_score=299.854;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303345;transcript_id=HG003_chrY_T0001049;gene_id=HG003_chrY_G0000339;Parent=HG003_chrY_T0001049;transcript_name=HG003_chrY_T0001049;gene_name=ENSG00000303345;ID=intron:HG003_chrY_T0001049:2;Name=ENSG00000303345;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10052765	10053148	.	+	.	source_transcript=ENST00000793817.1;source_transcript_name=ENST00000793817;source_gene=ENSG00000303345.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000303345.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000793817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000793817.1;transcript_score=299.854;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000303345;transcript_id=HG003_chrY_T0001049;gene_id=HG003_chrY_G0000339;Parent=HG003_chrY_T0001049;transcript_name=HG003_chrY_T0001049;gene_name=ENSG00000303345;ID=exon:HG003_chrY_T0001049:3;Name=ENSG00000303345;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10057872	10070587	.	+	.	source_gene_common_name=LINC00280;source_gene=ENSG00000229643.2;gene_id=HG003_chrY_G0000340;gene_biotype=lncRNA;gene_name=LINC00280;gene_sources=liftoff;ID=HG003_chrY_G0000340;Name=LINC00280
HG003_chrY	CAT	transcript	10057872	10067232	1000	+	.	source_transcript=ENST00000652050.1;source_transcript_name=LINC00280-202;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652050.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652050.1;transcript_score=274.91499999999996;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001050;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_G0000340;transcript_name=HG003_chrY_T0001050;gene_name=LINC00280;ID=HG003_chrY_T0001050;Name=LINC00280
HG003_chrY	CAT	exon	10057872	10058040	.	+	.	source_transcript=ENST00000652050.1;source_transcript_name=LINC00280-202;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652050.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652050.1;transcript_score=274.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001050;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_T0001050;transcript_name=HG003_chrY_T0001050;gene_name=LINC00280;ID=exon:HG003_chrY_T0001050:0;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10058041	10058416	.	+	.	source_transcript=ENST00000652050.1;source_transcript_name=LINC00280-202;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652050.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652050.1;transcript_score=274.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001050;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_T0001050;transcript_name=HG003_chrY_T0001050;gene_name=LINC00280;ID=intron:HG003_chrY_T0001050:0;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10058417	10058489	.	+	.	source_transcript=ENST00000652050.1;source_transcript_name=LINC00280-202;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652050.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652050.1;transcript_score=274.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001050;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_T0001050;transcript_name=HG003_chrY_T0001050;gene_name=LINC00280;ID=exon:HG003_chrY_T0001050:1;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10058490	10061030	.	+	.	source_transcript=ENST00000652050.1;source_transcript_name=LINC00280-202;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652050.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652050.1;transcript_score=274.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001050;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_T0001050;transcript_name=HG003_chrY_T0001050;gene_name=LINC00280;ID=intron:HG003_chrY_T0001050:1;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10061031	10061283	.	+	.	source_transcript=ENST00000652050.1;source_transcript_name=LINC00280-202;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652050.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652050.1;transcript_score=274.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001050;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_T0001050;transcript_name=HG003_chrY_T0001050;gene_name=LINC00280;ID=exon:HG003_chrY_T0001050:2;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10061284	10065372	.	+	.	source_transcript=ENST00000652050.1;source_transcript_name=LINC00280-202;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652050.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652050.1;transcript_score=274.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001050;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_T0001050;transcript_name=HG003_chrY_T0001050;gene_name=LINC00280;ID=intron:HG003_chrY_T0001050:2;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10065373	10067232	.	+	.	source_transcript=ENST00000652050.1;source_transcript_name=LINC00280-202;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652050.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652050.1;transcript_score=274.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001050;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_T0001050;transcript_name=HG003_chrY_T0001050;gene_name=LINC00280;ID=exon:HG003_chrY_T0001050:3;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10066381	10070587	1000	+	.	source_transcript=ENST00000439525.1;source_transcript_name=LINC00280-201;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439525.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439525.1;transcript_score=299.33;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001051;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_G0000340;transcript_name=HG003_chrY_T0001051;gene_name=LINC00280;ID=HG003_chrY_T0001051;Name=LINC00280
HG003_chrY	CAT	exon	10066381	10066466	.	+	.	source_transcript=ENST00000439525.1;source_transcript_name=LINC00280-201;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439525.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439525.1;transcript_score=299.33;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001051;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_T0001051;transcript_name=HG003_chrY_T0001051;gene_name=LINC00280;ID=exon:HG003_chrY_T0001051:0;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10066467	10068967	.	+	.	source_transcript=ENST00000439525.1;source_transcript_name=LINC00280-201;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439525.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439525.1;transcript_score=299.33;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001051;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_T0001051;transcript_name=HG003_chrY_T0001051;gene_name=LINC00280;ID=intron:HG003_chrY_T0001051:0;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10068968	10069110	.	+	.	source_transcript=ENST00000439525.1;source_transcript_name=LINC00280-201;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439525.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439525.1;transcript_score=299.33;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001051;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_T0001051;transcript_name=HG003_chrY_T0001051;gene_name=LINC00280;ID=exon:HG003_chrY_T0001051:1;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10069111	10070368	.	+	.	source_transcript=ENST00000439525.1;source_transcript_name=LINC00280-201;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439525.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439525.1;transcript_score=299.33;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001051;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_T0001051;transcript_name=HG003_chrY_T0001051;gene_name=LINC00280;ID=intron:HG003_chrY_T0001051:1;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10070369	10070587	.	+	.	source_transcript=ENST00000439525.1;source_transcript_name=LINC00280-201;source_gene=ENSG00000229643.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229643.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439525.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439525.1;transcript_score=299.33;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00280;transcript_id=HG003_chrY_T0001051;gene_id=HG003_chrY_G0000340;Parent=HG003_chrY_T0001051;transcript_name=HG003_chrY_T0001051;gene_name=LINC00280;ID=exon:HG003_chrY_T0001051:2;Name=LINC00280;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10084483	10099781	.	-	.	source_gene_common_name=RBMY2GP;source_gene=ENSG00000223744.1;gene_id=HG003_chrY_G0000341;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RBMY2GP;gene_sources=liftoff;ID=HG003_chrY_G0000341;Name=RBMY2GP
HG003_chrY	CAT	transcript	10084483	10099781	1000	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_G0000341;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=HG003_chrY_T0001052;Name=RBMY2GP
HG003_chrY	CAT	exon	10084483	10084784	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=exon:HG003_chrY_T0001052:0;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10084785	10085193	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=intron:HG003_chrY_T0001052:0;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10085194	10085275	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=exon:HG003_chrY_T0001052:1;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10085276	10085385	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=intron:HG003_chrY_T0001052:1;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10085386	10085496	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=exon:HG003_chrY_T0001052:2;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10085497	10085893	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=intron:HG003_chrY_T0001052:2;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10085894	10086004	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=exon:HG003_chrY_T0001052:3;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10086005	10086811	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=intron:HG003_chrY_T0001052:3;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10086812	10086911	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=exon:HG003_chrY_T0001052:4;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10086912	10088911	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=intron:HG003_chrY_T0001052:4;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10088912	10089061	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=exon:HG003_chrY_T0001052:5;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10089062	10099603	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=intron:HG003_chrY_T0001052:5;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10099604	10099781	.	-	.	source_transcript=ENST00000418671.1;source_transcript_name=RBMY2GP-201;source_gene=ENSG00000223744.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223744.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418671.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418671.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2GP;transcript_id=HG003_chrY_T0001052;gene_id=HG003_chrY_G0000341;Parent=HG003_chrY_T0001052;transcript_name=HG003_chrY_T0001052;gene_name=RBMY2GP;ID=exon:HG003_chrY_T0001052:6;Name=RBMY2GP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10085206	10111636	.	-	.	source_gene_common_name=ENSG00000295986;source_gene=ENSG00000295986.1;gene_id=HG003_chrY_G0000342;gene_biotype=lncRNA;gene_name=ENSG00000295986;gene_sources=liftoff;ID=HG003_chrY_G0000342;Name=ENSG00000295986
HG003_chrY	CAT	transcript	10085206	10111636	1000	-	.	source_transcript=ENST00000734848.1;source_transcript_name=ENST00000734848;source_gene=ENSG00000295986.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295986.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000734848.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000734848.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295986;transcript_id=HG003_chrY_T0001053;gene_id=HG003_chrY_G0000342;Parent=HG003_chrY_G0000342;transcript_name=HG003_chrY_T0001053;gene_name=ENSG00000295986;ID=HG003_chrY_T0001053;Name=ENSG00000295986
HG003_chrY	CAT	exon	10085206	10085275	.	-	.	source_transcript=ENST00000734848.1;source_transcript_name=ENST00000734848;source_gene=ENSG00000295986.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295986.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000734848.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000734848.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295986;transcript_id=HG003_chrY_T0001053;gene_id=HG003_chrY_G0000342;Parent=HG003_chrY_T0001053;transcript_name=HG003_chrY_T0001053;gene_name=ENSG00000295986;ID=exon:HG003_chrY_T0001053:0;Name=ENSG00000295986;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10085276	10088911	.	-	.	source_transcript=ENST00000734848.1;source_transcript_name=ENST00000734848;source_gene=ENSG00000295986.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295986.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000734848.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000734848.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295986;transcript_id=HG003_chrY_T0001053;gene_id=HG003_chrY_G0000342;Parent=HG003_chrY_T0001053;transcript_name=HG003_chrY_T0001053;gene_name=ENSG00000295986;ID=intron:HG003_chrY_T0001053:0;Name=ENSG00000295986;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10088912	10089027	.	-	.	source_transcript=ENST00000734848.1;source_transcript_name=ENST00000734848;source_gene=ENSG00000295986.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295986.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000734848.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000734848.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295986;transcript_id=HG003_chrY_T0001053;gene_id=HG003_chrY_G0000342;Parent=HG003_chrY_T0001053;transcript_name=HG003_chrY_T0001053;gene_name=ENSG00000295986;ID=exon:HG003_chrY_T0001053:1;Name=ENSG00000295986;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10089028	10111152	.	-	.	source_transcript=ENST00000734848.1;source_transcript_name=ENST00000734848;source_gene=ENSG00000295986.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295986.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000734848.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000734848.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295986;transcript_id=HG003_chrY_T0001053;gene_id=HG003_chrY_G0000342;Parent=HG003_chrY_T0001053;transcript_name=HG003_chrY_T0001053;gene_name=ENSG00000295986;ID=intron:HG003_chrY_T0001053:1;Name=ENSG00000295986;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10111153	10111636	.	-	.	source_transcript=ENST00000734848.1;source_transcript_name=ENST00000734848;source_gene=ENSG00000295986.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295986.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000734848.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000734848.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295986;transcript_id=HG003_chrY_T0001053;gene_id=HG003_chrY_G0000342;Parent=HG003_chrY_T0001053;transcript_name=HG003_chrY_T0001053;gene_name=ENSG00000295986;ID=exon:HG003_chrY_T0001053:2;Name=ENSG00000295986;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10119632	10121792	.	-	.	source_gene_common_name=ENSG00000235094;source_gene=ENSG00000235094.3;gene_id=HG003_chrY_G0000343;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000235094;gene_sources=liftoff;ID=HG003_chrY_G0000343;Name=ENSG00000235094
HG003_chrY	CAT	transcript	10119632	10121792	1000	-	.	source_transcript=ENST00000445200.2;source_transcript_name=ENST00000445200;source_gene=ENSG00000235094.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235094.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445200.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445200.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235094;transcript_id=HG003_chrY_T0001054;gene_id=HG003_chrY_G0000343;Parent=HG003_chrY_G0000343;transcript_name=HG003_chrY_T0001054;gene_name=ENSG00000235094;ID=HG003_chrY_T0001054;Name=ENSG00000235094
HG003_chrY	CAT	exon	10119632	10119677	.	-	.	source_transcript=ENST00000445200.2;source_transcript_name=ENST00000445200;source_gene=ENSG00000235094.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235094.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445200.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445200.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235094;transcript_id=HG003_chrY_T0001054;gene_id=HG003_chrY_G0000343;Parent=HG003_chrY_T0001054;transcript_name=HG003_chrY_T0001054;gene_name=ENSG00000235094;ID=exon:HG003_chrY_T0001054:0;Name=ENSG00000235094;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10119678	10119913	.	-	.	source_transcript=ENST00000445200.2;source_transcript_name=ENST00000445200;source_gene=ENSG00000235094.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235094.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445200.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445200.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235094;transcript_id=HG003_chrY_T0001054;gene_id=HG003_chrY_G0000343;Parent=HG003_chrY_T0001054;transcript_name=HG003_chrY_T0001054;gene_name=ENSG00000235094;ID=intron:HG003_chrY_T0001054:0;Name=ENSG00000235094;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10119914	10119936	.	-	.	source_transcript=ENST00000445200.2;source_transcript_name=ENST00000445200;source_gene=ENSG00000235094.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235094.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445200.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445200.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235094;transcript_id=HG003_chrY_T0001054;gene_id=HG003_chrY_G0000343;Parent=HG003_chrY_T0001054;transcript_name=HG003_chrY_T0001054;gene_name=ENSG00000235094;ID=exon:HG003_chrY_T0001054:1;Name=ENSG00000235094;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10119937	10120022	.	-	.	source_transcript=ENST00000445200.2;source_transcript_name=ENST00000445200;source_gene=ENSG00000235094.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235094.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445200.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445200.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235094;transcript_id=HG003_chrY_T0001054;gene_id=HG003_chrY_G0000343;Parent=HG003_chrY_T0001054;transcript_name=HG003_chrY_T0001054;gene_name=ENSG00000235094;ID=intron:HG003_chrY_T0001054:1;Name=ENSG00000235094;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10120023	10120138	.	-	.	source_transcript=ENST00000445200.2;source_transcript_name=ENST00000445200;source_gene=ENSG00000235094.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235094.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445200.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445200.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235094;transcript_id=HG003_chrY_T0001054;gene_id=HG003_chrY_G0000343;Parent=HG003_chrY_T0001054;transcript_name=HG003_chrY_T0001054;gene_name=ENSG00000235094;ID=exon:HG003_chrY_T0001054:2;Name=ENSG00000235094;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10120139	10120333	.	-	.	source_transcript=ENST00000445200.2;source_transcript_name=ENST00000445200;source_gene=ENSG00000235094.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235094.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445200.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445200.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235094;transcript_id=HG003_chrY_T0001054;gene_id=HG003_chrY_G0000343;Parent=HG003_chrY_T0001054;transcript_name=HG003_chrY_T0001054;gene_name=ENSG00000235094;ID=intron:HG003_chrY_T0001054:2;Name=ENSG00000235094;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10120334	10120411	.	-	.	source_transcript=ENST00000445200.2;source_transcript_name=ENST00000445200;source_gene=ENSG00000235094.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235094.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445200.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445200.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235094;transcript_id=HG003_chrY_T0001054;gene_id=HG003_chrY_G0000343;Parent=HG003_chrY_T0001054;transcript_name=HG003_chrY_T0001054;gene_name=ENSG00000235094;ID=exon:HG003_chrY_T0001054:3;Name=ENSG00000235094;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10120412	10121462	.	-	.	source_transcript=ENST00000445200.2;source_transcript_name=ENST00000445200;source_gene=ENSG00000235094.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235094.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445200.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445200.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235094;transcript_id=HG003_chrY_T0001054;gene_id=HG003_chrY_G0000343;Parent=HG003_chrY_T0001054;transcript_name=HG003_chrY_T0001054;gene_name=ENSG00000235094;ID=intron:HG003_chrY_T0001054:3;Name=ENSG00000235094;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10121463	10121792	.	-	.	source_transcript=ENST00000445200.2;source_transcript_name=ENST00000445200;source_gene=ENSG00000235094.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235094.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445200.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445200.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235094;transcript_id=HG003_chrY_T0001054;gene_id=HG003_chrY_G0000343;Parent=HG003_chrY_T0001054;transcript_name=HG003_chrY_T0001054;gene_name=ENSG00000235094;ID=exon:HG003_chrY_T0001054:4;Name=ENSG00000235094;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10122760	10123877	.	+	.	source_gene_common_name=TSPY19P;source_gene=ENSG00000234583.1;alternative_source_transcripts=ENST00000441642.1;gene_id=HG003_chrY_G0000344;gene_biotype=unprocessed_pseudogene;gene_name=TSPY19P;gene_sources=liftoff;ID=HG003_chrY_G0000344;Name=TSPY19P
HG003_chrY	CAT	transcript	10122760	10123877	1000	+	.	source_transcript=ENST00000418461.1;source_transcript_name=TSPY19P-201;source_gene=ENSG00000234583.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234583.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418461.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY19P;alternative_source_transcripts=ENST00000441642.1;transcript_id=HG003_chrY_T0001055;gene_id=HG003_chrY_G0000344;Parent=HG003_chrY_G0000344;transcript_name=HG003_chrY_T0001055;gene_name=TSPY19P;ID=HG003_chrY_T0001055;Name=TSPY19P
HG003_chrY	CAT	exon	10122760	10123235	.	+	.	source_transcript=ENST00000418461.1;source_transcript_name=TSPY19P-201;source_gene=ENSG00000234583.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234583.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY19P;alternative_source_transcripts=ENST00000441642.1;transcript_id=HG003_chrY_T0001055;gene_id=HG003_chrY_G0000344;Parent=HG003_chrY_T0001055;transcript_name=HG003_chrY_T0001055;gene_name=TSPY19P;ID=exon:HG003_chrY_T0001055:0;Name=TSPY19P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10123236	10123844	.	+	.	source_transcript=ENST00000418461.1;source_transcript_name=TSPY19P-201;source_gene=ENSG00000234583.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234583.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY19P;alternative_source_transcripts=ENST00000441642.1;transcript_id=HG003_chrY_T0001055;gene_id=HG003_chrY_G0000344;Parent=HG003_chrY_T0001055;transcript_name=HG003_chrY_T0001055;gene_name=TSPY19P;ID=intron:HG003_chrY_T0001055:0;Name=TSPY19P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10123845	10123877	.	+	.	source_transcript=ENST00000418461.1;source_transcript_name=TSPY19P-201;source_gene=ENSG00000234583.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234583.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418461.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418461.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY19P;alternative_source_transcripts=ENST00000441642.1;transcript_id=HG003_chrY_T0001055;gene_id=HG003_chrY_G0000344;Parent=HG003_chrY_T0001055;transcript_name=HG003_chrY_T0001055;gene_name=TSPY19P;ID=exon:HG003_chrY_T0001055:1;Name=TSPY19P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10152620	10161220	.	-	.	source_gene_common_name=ENSG00000296934;source_gene=ENSG00000296934.1;gene_id=HG003_chrY_G0000345;gene_biotype=lncRNA;gene_name=ENSG00000296934;gene_sources=liftoff;ID=HG003_chrY_G0000345;Name=ENSG00000296934
HG003_chrY	CAT	transcript	10152620	10161208	1000	-	.	source_transcript=ENST00000743706.1;source_transcript_name=ENST00000743706;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743706.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001056;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_G0000345;transcript_name=HG003_chrY_T0001056;gene_name=ENSG00000296934;ID=HG003_chrY_T0001056;Name=ENSG00000296934
HG003_chrY	CAT	exon	10152620	10153233	.	-	.	source_transcript=ENST00000743706.1;source_transcript_name=ENST00000743706;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001056;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001056;transcript_name=HG003_chrY_T0001056;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001056:0;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10153234	10159840	.	-	.	source_transcript=ENST00000743706.1;source_transcript_name=ENST00000743706;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001056;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001056;transcript_name=HG003_chrY_T0001056;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001056:0;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10159841	10159951	.	-	.	source_transcript=ENST00000743706.1;source_transcript_name=ENST00000743706;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001056;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001056;transcript_name=HG003_chrY_T0001056;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001056:1;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10159952	10160079	.	-	.	source_transcript=ENST00000743706.1;source_transcript_name=ENST00000743706;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001056;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001056;transcript_name=HG003_chrY_T0001056;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001056:1;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10160080	10160157	.	-	.	source_transcript=ENST00000743706.1;source_transcript_name=ENST00000743706;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001056;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001056;transcript_name=HG003_chrY_T0001056;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001056:2;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10160158	10160763	.	-	.	source_transcript=ENST00000743706.1;source_transcript_name=ENST00000743706;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001056;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001056;transcript_name=HG003_chrY_T0001056;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001056:2;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10160764	10161208	.	-	.	source_transcript=ENST00000743706.1;source_transcript_name=ENST00000743706;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001056;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001056;transcript_name=HG003_chrY_T0001056;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001056:3;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10156731	10161220	1000	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_G0000345;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=HG003_chrY_T0001058;Name=ENSG00000296934
HG003_chrY	CAT	exon	10156731	10157299	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001058:0;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10157300	10158701	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001058:0;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10158702	10158715	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001058:1;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10158716	10159368	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001058:1;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10159369	10159491	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001058:2;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10159492	10159840	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001058:2;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10159841	10159951	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001058:3;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10159952	10160079	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001058:3;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10160080	10160200	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001058:4;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10160201	10160655	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001058:4;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10160656	10160730	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001058:5;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10160731	10161153	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001058:5;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10161154	10161220	.	-	.	source_transcript=ENST00000743707.1;source_transcript_name=ENST00000743707;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001058;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001058;transcript_name=HG003_chrY_T0001058;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001058:6;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10156899	10161231	1000	-	.	source_transcript=ENST00000743708.1;source_transcript_name=ENST00000743708;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743708.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001059;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_G0000345;transcript_name=HG003_chrY_T0001059;gene_name=ENSG00000296934;ID=HG003_chrY_T0001059;Name=ENSG00000296934
HG003_chrY	CAT	exon	10156899	10157280	.	-	.	source_transcript=ENST00000743708.1;source_transcript_name=ENST00000743708;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001059;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001059;transcript_name=HG003_chrY_T0001059;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001059:0;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10157281	10158701	.	-	.	source_transcript=ENST00000743708.1;source_transcript_name=ENST00000743708;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001059;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001059;transcript_name=HG003_chrY_T0001059;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001059:0;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10158702	10158715	.	-	.	source_transcript=ENST00000743708.1;source_transcript_name=ENST00000743708;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001059;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001059;transcript_name=HG003_chrY_T0001059;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001059:1;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10158716	10159368	.	-	.	source_transcript=ENST00000743708.1;source_transcript_name=ENST00000743708;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001059;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001059;transcript_name=HG003_chrY_T0001059;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001059:1;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10159369	10159491	.	-	.	source_transcript=ENST00000743708.1;source_transcript_name=ENST00000743708;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001059;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001059;transcript_name=HG003_chrY_T0001059;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001059:2;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10159492	10159598	.	-	.	source_transcript=ENST00000743708.1;source_transcript_name=ENST00000743708;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001059;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001059;transcript_name=HG003_chrY_T0001059;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001059:2;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10159599	10159741	.	-	.	source_transcript=ENST00000743708.1;source_transcript_name=ENST00000743708;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001059;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001059;transcript_name=HG003_chrY_T0001059;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001059:3;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10159742	10159840	.	-	.	source_transcript=ENST00000743708.1;source_transcript_name=ENST00000743708;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001059;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001059;transcript_name=HG003_chrY_T0001059;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001059:3;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10159841	10159951	.	-	.	source_transcript=ENST00000743708.1;source_transcript_name=ENST00000743708;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001059;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001059;transcript_name=HG003_chrY_T0001059;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001059:4;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10159952	10160079	.	-	.	source_transcript=ENST00000743708.1;source_transcript_name=ENST00000743708;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001059;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001059;transcript_name=HG003_chrY_T0001059;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001059:4;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10160080	10161231	.	-	.	source_transcript=ENST00000743708.1;source_transcript_name=ENST00000743708;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001059;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001059;transcript_name=HG003_chrY_T0001059;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001059:5;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10158155	10161220	1000	-	.	source_transcript=ENST00000743709.1;source_transcript_name=ENST00000743709;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743709.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001060;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_G0000345;transcript_name=HG003_chrY_T0001060;gene_name=ENSG00000296934;ID=HG003_chrY_T0001060;Name=ENSG00000296934
HG003_chrY	CAT	exon	10158155	10158715	.	-	.	source_transcript=ENST00000743709.1;source_transcript_name=ENST00000743709;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001060;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001060;transcript_name=HG003_chrY_T0001060;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001060:0;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10158716	10159368	.	-	.	source_transcript=ENST00000743709.1;source_transcript_name=ENST00000743709;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001060;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001060;transcript_name=HG003_chrY_T0001060;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001060:0;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10159369	10159491	.	-	.	source_transcript=ENST00000743709.1;source_transcript_name=ENST00000743709;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001060;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001060;transcript_name=HG003_chrY_T0001060;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001060:1;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10159492	10159598	.	-	.	source_transcript=ENST00000743709.1;source_transcript_name=ENST00000743709;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001060;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001060;transcript_name=HG003_chrY_T0001060;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001060:1;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10159599	10159741	.	-	.	source_transcript=ENST00000743709.1;source_transcript_name=ENST00000743709;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001060;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001060;transcript_name=HG003_chrY_T0001060;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001060:2;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10159742	10159840	.	-	.	source_transcript=ENST00000743709.1;source_transcript_name=ENST00000743709;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001060;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001060;transcript_name=HG003_chrY_T0001060;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001060:2;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10159841	10159951	.	-	.	source_transcript=ENST00000743709.1;source_transcript_name=ENST00000743709;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001060;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001060;transcript_name=HG003_chrY_T0001060;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001060:3;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10159952	10160079	.	-	.	source_transcript=ENST00000743709.1;source_transcript_name=ENST00000743709;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001060;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001060;transcript_name=HG003_chrY_T0001060;gene_name=ENSG00000296934;ID=intron:HG003_chrY_T0001060:3;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10160080	10161220	.	-	.	source_transcript=ENST00000743709.1;source_transcript_name=ENST00000743709;source_gene=ENSG00000296934.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296934.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000743709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000743709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296934;transcript_id=HG003_chrY_T0001060;gene_id=HG003_chrY_G0000345;Parent=HG003_chrY_T0001060;transcript_name=HG003_chrY_T0001060;gene_name=ENSG00000296934;ID=exon:HG003_chrY_T0001060:4;Name=ENSG00000296934;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10153768	10154254	.	+	.	source_gene_common_name=ENSG00000275352;source_gene=ENSG00000275352.1;gene_id=HG003_chrY_G0000346;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000275352;gene_sources=liftoff;ID=HG003_chrY_G0000346;Name=ENSG00000275352
HG003_chrY	CAT	transcript	10153768	10154254	1000	+	.	source_transcript=ENST00000613408.1;source_transcript_name=ENST00000613408;source_gene=ENSG00000275352.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275352.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613408.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613408.1;transcript_score=299.658;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275352;transcript_id=HG003_chrY_T0001057;gene_id=HG003_chrY_G0000346;Parent=HG003_chrY_G0000346;transcript_name=HG003_chrY_T0001057;gene_name=ENSG00000275352;ID=HG003_chrY_T0001057;Name=ENSG00000275352
HG003_chrY	CAT	exon	10153768	10153831	.	+	.	source_transcript=ENST00000613408.1;source_transcript_name=ENST00000613408;source_gene=ENSG00000275352.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275352.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613408.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613408.1;transcript_score=299.658;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275352;transcript_id=HG003_chrY_T0001057;gene_id=HG003_chrY_G0000346;Parent=HG003_chrY_T0001057;transcript_name=HG003_chrY_T0001057;gene_name=ENSG00000275352;ID=exon:HG003_chrY_T0001057:0;Name=ENSG00000275352;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10153832	10153920	.	+	.	source_transcript=ENST00000613408.1;source_transcript_name=ENST00000613408;source_gene=ENSG00000275352.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275352.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613408.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613408.1;transcript_score=299.658;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275352;transcript_id=HG003_chrY_T0001057;gene_id=HG003_chrY_G0000346;Parent=HG003_chrY_T0001057;transcript_name=HG003_chrY_T0001057;gene_name=ENSG00000275352;ID=intron:HG003_chrY_T0001057:0;Name=ENSG00000275352;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10153921	10154065	.	+	.	source_transcript=ENST00000613408.1;source_transcript_name=ENST00000613408;source_gene=ENSG00000275352.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275352.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613408.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613408.1;transcript_score=299.658;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275352;transcript_id=HG003_chrY_T0001057;gene_id=HG003_chrY_G0000346;Parent=HG003_chrY_T0001057;transcript_name=HG003_chrY_T0001057;gene_name=ENSG00000275352;ID=exon:HG003_chrY_T0001057:1;Name=ENSG00000275352;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10154066	10154171	.	+	.	source_transcript=ENST00000613408.1;source_transcript_name=ENST00000613408;source_gene=ENSG00000275352.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275352.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613408.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613408.1;transcript_score=299.658;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275352;transcript_id=HG003_chrY_T0001057;gene_id=HG003_chrY_G0000346;Parent=HG003_chrY_T0001057;transcript_name=HG003_chrY_T0001057;gene_name=ENSG00000275352;ID=intron:HG003_chrY_T0001057:1;Name=ENSG00000275352;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10154172	10154254	.	+	.	source_transcript=ENST00000613408.1;source_transcript_name=ENST00000613408;source_gene=ENSG00000275352.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275352.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613408.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613408.1;transcript_score=299.658;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275352;transcript_id=HG003_chrY_T0001057;gene_id=HG003_chrY_G0000346;Parent=HG003_chrY_T0001057;transcript_name=HG003_chrY_T0001057;gene_name=ENSG00000275352;ID=exon:HG003_chrY_T0001057:2;Name=ENSG00000275352;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10158558	10161240	.	-	.	source_gene_common_name=TSPY11P;source_gene=ENSG00000238235.1;gene_id=HG003_chrY_G0000347;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY11P;gene_sources=liftoff;ID=HG003_chrY_G0000347;Name=TSPY11P
HG003_chrY	CAT	transcript	10158558	10161240	1000	-	.	source_transcript=ENST00000442607.1;source_transcript_name=TSPY11P-201;source_gene=ENSG00000238235.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000238235.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442607.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442607.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY11P;transcript_id=HG003_chrY_T0001061;gene_id=HG003_chrY_G0000347;Parent=HG003_chrY_G0000347;transcript_name=HG003_chrY_T0001061;gene_name=TSPY11P;ID=HG003_chrY_T0001061;Name=TSPY11P
HG003_chrY	CAT	exon	10158558	10158704	.	-	.	source_transcript=ENST00000442607.1;source_transcript_name=TSPY11P-201;source_gene=ENSG00000238235.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000238235.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442607.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442607.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY11P;transcript_id=HG003_chrY_T0001061;gene_id=HG003_chrY_G0000347;Parent=HG003_chrY_T0001061;transcript_name=HG003_chrY_T0001061;gene_name=TSPY11P;ID=exon:HG003_chrY_T0001061:0;Name=TSPY11P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10158705	10159402	.	-	.	source_transcript=ENST00000442607.1;source_transcript_name=TSPY11P-201;source_gene=ENSG00000238235.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000238235.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442607.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442607.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY11P;transcript_id=HG003_chrY_T0001061;gene_id=HG003_chrY_G0000347;Parent=HG003_chrY_T0001061;transcript_name=HG003_chrY_T0001061;gene_name=TSPY11P;ID=intron:HG003_chrY_T0001061:0;Name=TSPY11P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10159403	10159491	.	-	.	source_transcript=ENST00000442607.1;source_transcript_name=TSPY11P-201;source_gene=ENSG00000238235.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000238235.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442607.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442607.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY11P;transcript_id=HG003_chrY_T0001061;gene_id=HG003_chrY_G0000347;Parent=HG003_chrY_T0001061;transcript_name=HG003_chrY_T0001061;gene_name=TSPY11P;ID=exon:HG003_chrY_T0001061:1;Name=TSPY11P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10159492	10159598	.	-	.	source_transcript=ENST00000442607.1;source_transcript_name=TSPY11P-201;source_gene=ENSG00000238235.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000238235.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442607.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442607.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY11P;transcript_id=HG003_chrY_T0001061;gene_id=HG003_chrY_G0000347;Parent=HG003_chrY_T0001061;transcript_name=HG003_chrY_T0001061;gene_name=TSPY11P;ID=intron:HG003_chrY_T0001061:1;Name=TSPY11P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10159599	10159741	.	-	.	source_transcript=ENST00000442607.1;source_transcript_name=TSPY11P-201;source_gene=ENSG00000238235.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000238235.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442607.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442607.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY11P;transcript_id=HG003_chrY_T0001061;gene_id=HG003_chrY_G0000347;Parent=HG003_chrY_T0001061;transcript_name=HG003_chrY_T0001061;gene_name=TSPY11P;ID=exon:HG003_chrY_T0001061:2;Name=TSPY11P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10159742	10159840	.	-	.	source_transcript=ENST00000442607.1;source_transcript_name=TSPY11P-201;source_gene=ENSG00000238235.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000238235.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442607.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442607.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY11P;transcript_id=HG003_chrY_T0001061;gene_id=HG003_chrY_G0000347;Parent=HG003_chrY_T0001061;transcript_name=HG003_chrY_T0001061;gene_name=TSPY11P;ID=intron:HG003_chrY_T0001061:2;Name=TSPY11P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10159841	10159951	.	-	.	source_transcript=ENST00000442607.1;source_transcript_name=TSPY11P-201;source_gene=ENSG00000238235.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000238235.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442607.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442607.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY11P;transcript_id=HG003_chrY_T0001061;gene_id=HG003_chrY_G0000347;Parent=HG003_chrY_T0001061;transcript_name=HG003_chrY_T0001061;gene_name=TSPY11P;ID=exon:HG003_chrY_T0001061:3;Name=TSPY11P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10159952	10160079	.	-	.	source_transcript=ENST00000442607.1;source_transcript_name=TSPY11P-201;source_gene=ENSG00000238235.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000238235.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442607.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442607.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY11P;transcript_id=HG003_chrY_T0001061;gene_id=HG003_chrY_G0000347;Parent=HG003_chrY_T0001061;transcript_name=HG003_chrY_T0001061;gene_name=TSPY11P;ID=intron:HG003_chrY_T0001061:3;Name=TSPY11P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10160080	10160157	.	-	.	source_transcript=ENST00000442607.1;source_transcript_name=TSPY11P-201;source_gene=ENSG00000238235.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000238235.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442607.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442607.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY11P;transcript_id=HG003_chrY_T0001061;gene_id=HG003_chrY_G0000347;Parent=HG003_chrY_T0001061;transcript_name=HG003_chrY_T0001061;gene_name=TSPY11P;ID=exon:HG003_chrY_T0001061:4;Name=TSPY11P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10160158	10160763	.	-	.	source_transcript=ENST00000442607.1;source_transcript_name=TSPY11P-201;source_gene=ENSG00000238235.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000238235.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442607.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442607.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY11P;transcript_id=HG003_chrY_T0001061;gene_id=HG003_chrY_G0000347;Parent=HG003_chrY_T0001061;transcript_name=HG003_chrY_T0001061;gene_name=TSPY11P;ID=intron:HG003_chrY_T0001061:4;Name=TSPY11P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10160764	10161240	.	-	.	source_transcript=ENST00000442607.1;source_transcript_name=TSPY11P-201;source_gene=ENSG00000238235.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000238235.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442607.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442607.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY11P;transcript_id=HG003_chrY_T0001061;gene_id=HG003_chrY_G0000347;Parent=HG003_chrY_T0001061;transcript_name=HG003_chrY_T0001061;gene_name=TSPY11P;ID=exon:HG003_chrY_T0001061:5;Name=TSPY11P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10162238	10164231	.	+	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000234830.9;gene_id=HG003_chrY_G0000348;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000348;Name=FAM197Y9
HG003_chrY	CAT	transcript	10162238	10164231	1000	+	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001062;gene_id=HG003_chrY_G0000348;Parent=HG003_chrY_G0000348;transcript_name=HG003_chrY_T0001062;gene_name=FAM197Y9;ID=HG003_chrY_T0001062;Name=FAM197Y9
HG003_chrY	CAT	exon	10162238	10162547	.	+	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001062;gene_id=HG003_chrY_G0000348;Parent=HG003_chrY_T0001062;transcript_name=HG003_chrY_T0001062;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0001062:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10162548	10163889	.	+	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001062;gene_id=HG003_chrY_G0000348;Parent=HG003_chrY_T0001062;transcript_name=HG003_chrY_T0001062;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0001062:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10163890	10163973	.	+	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001062;gene_id=HG003_chrY_G0000348;Parent=HG003_chrY_T0001062;transcript_name=HG003_chrY_T0001062;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0001062:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10163974	10164085	.	+	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001062;gene_id=HG003_chrY_G0000348;Parent=HG003_chrY_T0001062;transcript_name=HG003_chrY_T0001062;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0001062:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10164086	10164231	.	+	.	source_transcript=ENST00000505707.3;source_transcript_name=FAM197Y9-201;source_gene=ENSG00000234830.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234830.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000505707.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000505707.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001062;gene_id=HG003_chrY_G0000348;Parent=HG003_chrY_T0001062;transcript_name=HG003_chrY_T0001062;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0001062:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10163880	10171567	.	+	.	source_gene_common_name=FAM197Y9;source_gene=ENSG00000290448.1;gene_id=HG003_chrY_G0000349;gene_biotype=lncRNA;gene_name=FAM197Y9;gene_sources=liftoff;ID=HG003_chrY_G0000349;Name=FAM197Y9
HG003_chrY	CAT	transcript	10163880	10171567	1000	+	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001063;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_G0000349;transcript_name=HG003_chrY_T0001063;gene_name=FAM197Y9;ID=HG003_chrY_T0001063;Name=FAM197Y9
HG003_chrY	CAT	exon	10163880	10163999	.	+	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001063;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_T0001063;transcript_name=HG003_chrY_T0001063;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0001063:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10164000	10165804	.	+	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001063;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_T0001063;transcript_name=HG003_chrY_T0001063;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0001063:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10165805	10165890	.	+	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001063;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_T0001063;transcript_name=HG003_chrY_T0001063;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0001063:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10165891	10169441	.	+	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001063;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_T0001063;transcript_name=HG003_chrY_T0001063;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0001063:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10169442	10171567	.	+	.	source_transcript=ENST00000451062.1;source_transcript_name=FAM197Y9-202;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001063;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_T0001063;transcript_name=HG003_chrY_T0001063;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0001063:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10163898	10169501	1000	+	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001064;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_G0000349;transcript_name=HG003_chrY_T0001064;gene_name=FAM197Y9;ID=HG003_chrY_T0001064;Name=FAM197Y9
HG003_chrY	CAT	exon	10163898	10163999	.	+	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001064;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_T0001064;transcript_name=HG003_chrY_T0001064;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0001064:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10164000	10164085	.	+	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001064;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_T0001064;transcript_name=HG003_chrY_T0001064;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0001064:0;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10164086	10164231	.	+	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001064;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_T0001064;transcript_name=HG003_chrY_T0001064;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0001064:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10164232	10165731	.	+	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001064;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_T0001064;transcript_name=HG003_chrY_T0001064;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0001064:1;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10165732	10165890	.	+	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001064;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_T0001064;transcript_name=HG003_chrY_T0001064;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0001064:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10165891	10169441	.	+	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001064;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_T0001064;transcript_name=HG003_chrY_T0001064;gene_name=FAM197Y9;ID=intron:HG003_chrY_T0001064:2;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10169442	10169501	.	+	.	source_transcript=ENST00000452103.5;source_transcript_name=FAM197Y9-203;source_gene=ENSG00000290448.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290448.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000452103.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000452103.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM197Y9;transcript_id=HG003_chrY_T0001064;gene_id=HG003_chrY_G0000349;Parent=HG003_chrY_T0001064;transcript_name=HG003_chrY_T0001064;gene_name=FAM197Y9;ID=exon:HG003_chrY_T0001064:3;Name=FAM197Y9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10178813	10181609	.	-	.	source_gene_common_name=TSPY2;source_gene=ENSG00000168757.13;gene_id=HG003_chrY_G0000350;gene_biotype=protein_coding;gene_name=TSPY2;gene_sources=liftoff;ID=HG003_chrY_G0000350;Name=TSPY2
HG003_chrY	CAT	transcript	10178813	10181563	1000	-	.	source_transcript=ENST00000470569.1;source_transcript_name=TSPY2-205;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000470569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470569.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001065;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_G0000350;transcript_name=HG003_chrY_T0001065;gene_name=TSPY2;ID=HG003_chrY_T0001065;Name=TSPY2
HG003_chrY	CAT	exon	10178813	10179596	.	-	.	source_transcript=ENST00000470569.1;source_transcript_name=TSPY2-205;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000470569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470569.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001065;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001065;transcript_name=HG003_chrY_T0001065;gene_name=TSPY2;ID=exon:HG003_chrY_T0001065:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179597	10179723	.	-	.	source_transcript=ENST00000470569.1;source_transcript_name=TSPY2-205;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000470569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470569.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001065;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001065;transcript_name=HG003_chrY_T0001065;gene_name=TSPY2;ID=intron:HG003_chrY_T0001065:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179724	10180270	.	-	.	source_transcript=ENST00000470569.1;source_transcript_name=TSPY2-205;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000470569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470569.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001065;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001065;transcript_name=HG003_chrY_T0001065;gene_name=TSPY2;ID=exon:HG003_chrY_T0001065:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180271	10180398	.	-	.	source_transcript=ENST00000470569.1;source_transcript_name=TSPY2-205;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000470569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470569.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001065;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001065;transcript_name=HG003_chrY_T0001065;gene_name=TSPY2;ID=intron:HG003_chrY_T0001065:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180399	10180476	.	-	.	source_transcript=ENST00000470569.1;source_transcript_name=TSPY2-205;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000470569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470569.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001065;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001065;transcript_name=HG003_chrY_T0001065;gene_name=TSPY2;ID=exon:HG003_chrY_T0001065:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180477	10181077	.	-	.	source_transcript=ENST00000470569.1;source_transcript_name=TSPY2-205;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000470569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470569.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001065;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001065;transcript_name=HG003_chrY_T0001065;gene_name=TSPY2;ID=intron:HG003_chrY_T0001065:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10181078	10181563	.	-	.	source_transcript=ENST00000470569.1;source_transcript_name=TSPY2-205;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000470569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470569.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001065;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001065;transcript_name=HG003_chrY_T0001065;gene_name=TSPY2;ID=exon:HG003_chrY_T0001065:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10178814	10181609	100	-	.	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_G0000350;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=HG003_chrY_T0001066;Name=TSPY2
HG003_chrY	CAT	exon	10178814	10179029	.	-	.	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=exon:HG003_chrY_T0001066:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179007	10179029	.	-	2	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001066:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179030	10179723	.	-	.	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=intron:HG003_chrY_T0001066:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179724	10179805	.	-	.	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=exon:HG003_chrY_T0001066:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179724	10179805	.	-	0	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001066:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179806	10179911	.	-	.	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=intron:HG003_chrY_T0001066:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179912	10180057	.	-	.	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=exon:HG003_chrY_T0001066:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179912	10180057	.	-	2	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001066:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180058	10180158	.	-	.	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=intron:HG003_chrY_T0001066:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180159	10180270	.	-	.	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=exon:HG003_chrY_T0001066:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10180159	10180270	.	-	0	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001066:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180271	10180398	.	-	.	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=intron:HG003_chrY_T0001066:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180399	10180476	.	-	.	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=exon:HG003_chrY_T0001066:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10180399	10180476	.	-	0	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001066:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180477	10181077	.	-	.	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=intron:HG003_chrY_T0001066:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10181078	10181609	.	-	.	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=exon:HG003_chrY_T0001066:5;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10181078	10181563	.	-	0	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001066:5;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	10181561	10181563	.	-	0	source_transcript=ENST00000320701.9;source_transcript_name=TSPY2-201;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000320701.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000320701.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001066;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001066;transcript_name=HG003_chrY_T0001066;gene_name=TSPY2;ID=start_codon:HG003_chrY_T0001066;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10178820	10181563	10000	-	.	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_G0000350;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=HG003_chrY_T0001067;Name=TSPY2
HG003_chrY	CAT	exon	10178820	10179029	.	-	.	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=exon:HG003_chrY_T0001067:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179030	10179723	.	-	.	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=intron:HG003_chrY_T0001067:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179724	10179816	.	-	.	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=exon:HG003_chrY_T0001067:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179754	10179816	.	-	0	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001067:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	10179754	10179756	.	-	0	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=stop_codon:HG003_chrY_T0001067;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179817	10179911	.	-	.	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=intron:HG003_chrY_T0001067:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179912	10180057	.	-	.	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=exon:HG003_chrY_T0001067:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179912	10180057	.	-	2	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001067:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180058	10180158	.	-	.	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=intron:HG003_chrY_T0001067:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180159	10180270	.	-	.	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=exon:HG003_chrY_T0001067:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10180159	10180270	.	-	0	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001067:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180271	10180398	.	-	.	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=intron:HG003_chrY_T0001067:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180399	10180476	.	-	.	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=exon:HG003_chrY_T0001067:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10180399	10180476	.	-	0	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001067:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180477	10181077	.	-	.	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=intron:HG003_chrY_T0001067:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10181078	10181563	.	-	.	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=exon:HG003_chrY_T0001067:5;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10181078	10181563	.	-	0	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001067:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	10181561	10181563	.	-	0	source_transcript=ENST00000383042.1;source_transcript_name=TSPY2-202;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000383042.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001067;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001067;transcript_name=HG003_chrY_T0001067;gene_name=TSPY2;ID=start_codon:HG003_chrY_T0001067;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10178828	10180209	1000	-	.	source_transcript=ENST00000464674.1;source_transcript_name=TSPY2-204;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000464674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000464674.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001068;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_G0000350;transcript_name=HG003_chrY_T0001068;gene_name=TSPY2;ID=HG003_chrY_T0001068;Name=TSPY2
HG003_chrY	CAT	exon	10178828	10179029	.	-	.	source_transcript=ENST00000464674.1;source_transcript_name=TSPY2-204;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000464674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000464674.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001068;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001068;transcript_name=HG003_chrY_T0001068;gene_name=TSPY2;ID=exon:HG003_chrY_T0001068:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179030	10179723	.	-	.	source_transcript=ENST00000464674.1;source_transcript_name=TSPY2-204;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000464674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000464674.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001068;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001068;transcript_name=HG003_chrY_T0001068;gene_name=TSPY2;ID=intron:HG003_chrY_T0001068:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179724	10179805	.	-	.	source_transcript=ENST00000464674.1;source_transcript_name=TSPY2-204;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000464674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000464674.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001068;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001068;transcript_name=HG003_chrY_T0001068;gene_name=TSPY2;ID=exon:HG003_chrY_T0001068:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179806	10179911	.	-	.	source_transcript=ENST00000464674.1;source_transcript_name=TSPY2-204;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000464674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000464674.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001068;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001068;transcript_name=HG003_chrY_T0001068;gene_name=TSPY2;ID=intron:HG003_chrY_T0001068:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179912	10180209	.	-	.	source_transcript=ENST00000464674.1;source_transcript_name=TSPY2-204;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000464674.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000464674.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001068;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001068;transcript_name=HG003_chrY_T0001068;gene_name=TSPY2;ID=exon:HG003_chrY_T0001068:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10178940	10181609	100	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_G0000350;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=HG003_chrY_T0001069;Name=TSPY2
HG003_chrY	CAT	exon	10178940	10179029	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=exon:HG003_chrY_T0001069:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179007	10179029	.	-	2	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001069:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179030	10179723	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=intron:HG003_chrY_T0001069:0;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179724	10179805	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=exon:HG003_chrY_T0001069:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179724	10179805	.	-	0	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001069:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10179806	10179911	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=intron:HG003_chrY_T0001069:1;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10179912	10180057	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=exon:HG003_chrY_T0001069:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10179912	10180057	.	-	2	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001069:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180058	10180158	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=intron:HG003_chrY_T0001069:2;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180159	10180270	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=exon:HG003_chrY_T0001069:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10180159	10180270	.	-	0	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001069:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180271	10180398	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=intron:HG003_chrY_T0001069:3;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10180399	10180476	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=exon:HG003_chrY_T0001069:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10180399	10180476	.	-	0	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001069:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10180477	10181077	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=intron:HG003_chrY_T0001069:4;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10181078	10181215	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=exon:HG003_chrY_T0001069:5;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10181078	10181215	.	-	0	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001069:5;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10181216	10181476	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=intron:HG003_chrY_T0001069:5;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10181477	10181609	.	-	.	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=exon:HG003_chrY_T0001069:6;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	10181477	10181563	.	-	0	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=CDS:HG003_chrY_T0001069:6;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	10181561	10181563	.	-	0	source_transcript=ENST00000429039.5;source_transcript_name=TSPY2-203;source_gene=ENSG00000168757.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000168757.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000429039.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000429039.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY2;transcript_id=HG003_chrY_T0001069;gene_id=HG003_chrY_G0000350;Parent=HG003_chrY_T0001069;transcript_name=HG003_chrY_T0001069;gene_name=TSPY2;ID=start_codon:HG003_chrY_T0001069;Name=TSPY2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10181741	10186559	.	+	.	source_gene_common_name=ENSG00000290369;source_gene=ENSG00000290369.2;gene_id=HG003_chrY_G0000351;gene_biotype=lncRNA;gene_name=ENSG00000290369;gene_sources=liftoff;ID=HG003_chrY_G0000351;Name=ENSG00000290369
HG003_chrY	CAT	transcript	10181741	10186380	1000	+	.	source_transcript=ENST00000451467.2;source_transcript_name=ENST00000451467;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451467.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000451467.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001070;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_G0000351;transcript_name=HG003_chrY_T0001070;gene_name=ENSG00000290369;ID=HG003_chrY_T0001070;Name=ENSG00000290369
HG003_chrY	CAT	exon	10181741	10181926	.	+	.	source_transcript=ENST00000451467.2;source_transcript_name=ENST00000451467;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451467.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000451467.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001070;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001070;transcript_name=HG003_chrY_T0001070;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001070:0;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10181927	10183861	.	+	.	source_transcript=ENST00000451467.2;source_transcript_name=ENST00000451467;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451467.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000451467.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001070;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001070;transcript_name=HG003_chrY_T0001070;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001070:0;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10183862	10183984	.	+	.	source_transcript=ENST00000451467.2;source_transcript_name=ENST00000451467;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451467.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000451467.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001070;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001070;transcript_name=HG003_chrY_T0001070;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001070:1;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10183985	10184179	.	+	.	source_transcript=ENST00000451467.2;source_transcript_name=ENST00000451467;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451467.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000451467.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001070;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001070;transcript_name=HG003_chrY_T0001070;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001070:1;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10184180	10184269	.	+	.	source_transcript=ENST00000451467.2;source_transcript_name=ENST00000451467;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451467.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000451467.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001070;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001070;transcript_name=HG003_chrY_T0001070;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001070:2;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10184270	10184382	.	+	.	source_transcript=ENST00000451467.2;source_transcript_name=ENST00000451467;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451467.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000451467.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001070;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001070;transcript_name=HG003_chrY_T0001070;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001070:2;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10184383	10184528	.	+	.	source_transcript=ENST00000451467.2;source_transcript_name=ENST00000451467;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451467.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000451467.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001070;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001070;transcript_name=HG003_chrY_T0001070;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001070:3;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10184529	10185068	.	+	.	source_transcript=ENST00000451467.2;source_transcript_name=ENST00000451467;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451467.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000451467.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001070;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001070;transcript_name=HG003_chrY_T0001070;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001070:3;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10185069	10186380	.	+	.	source_transcript=ENST00000451467.2;source_transcript_name=ENST00000451467;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000451467.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000451467.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001070;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001070;transcript_name=HG003_chrY_T0001070;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001070:4;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10181752	10186559	1000	+	.	source_transcript=ENST00000748741.1;source_transcript_name=ENST00000748741;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748741.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001071;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_G0000351;transcript_name=HG003_chrY_T0001071;gene_name=ENSG00000290369;ID=HG003_chrY_T0001071;Name=ENSG00000290369
HG003_chrY	CAT	exon	10181752	10181926	.	+	.	source_transcript=ENST00000748741.1;source_transcript_name=ENST00000748741;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001071;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001071;transcript_name=HG003_chrY_T0001071;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001071:0;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10181927	10183861	.	+	.	source_transcript=ENST00000748741.1;source_transcript_name=ENST00000748741;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001071;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001071;transcript_name=HG003_chrY_T0001071;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001071:0;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10183862	10183984	.	+	.	source_transcript=ENST00000748741.1;source_transcript_name=ENST00000748741;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001071;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001071;transcript_name=HG003_chrY_T0001071;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001071:1;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10183985	10184179	.	+	.	source_transcript=ENST00000748741.1;source_transcript_name=ENST00000748741;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001071;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001071;transcript_name=HG003_chrY_T0001071;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001071:1;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10184180	10184269	.	+	.	source_transcript=ENST00000748741.1;source_transcript_name=ENST00000748741;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001071;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001071;transcript_name=HG003_chrY_T0001071;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001071:2;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10184270	10184382	.	+	.	source_transcript=ENST00000748741.1;source_transcript_name=ENST00000748741;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001071;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001071;transcript_name=HG003_chrY_T0001071;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001071:2;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10184383	10184528	.	+	.	source_transcript=ENST00000748741.1;source_transcript_name=ENST00000748741;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001071;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001071;transcript_name=HG003_chrY_T0001071;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001071:3;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10184529	10185301	.	+	.	source_transcript=ENST00000748741.1;source_transcript_name=ENST00000748741;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001071;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001071;transcript_name=HG003_chrY_T0001071;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001071:3;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10185302	10185409	.	+	.	source_transcript=ENST00000748741.1;source_transcript_name=ENST00000748741;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001071;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001071;transcript_name=HG003_chrY_T0001071;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001071:4;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10185410	10185961	.	+	.	source_transcript=ENST00000748741.1;source_transcript_name=ENST00000748741;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001071;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001071;transcript_name=HG003_chrY_T0001071;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001071:4;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10185962	10186559	.	+	.	source_transcript=ENST00000748741.1;source_transcript_name=ENST00000748741;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001071;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001071;transcript_name=HG003_chrY_T0001071;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001071:5;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10181763	10186380	1000	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_G0000351;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=HG003_chrY_T0001072;Name=ENSG00000290369
HG003_chrY	CAT	exon	10181763	10181926	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001072:0;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10181927	10183861	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001072:0;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10183862	10183984	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001072:1;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10183985	10184183	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001072:1;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10184184	10184269	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001072:2;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10184270	10184382	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001072:2;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10184383	10184528	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001072:3;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10184529	10185068	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001072:3;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10185069	10185121	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001072:4;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10185122	10185301	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001072:4;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10185302	10185409	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001072:5;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10185410	10185961	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=intron:HG003_chrY_T0001072:5;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10185962	10186380	.	+	.	source_transcript=ENST00000748742.1;source_transcript_name=ENST00000748742;source_gene=ENSG00000290369.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290369.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000748742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000748742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290369;transcript_id=HG003_chrY_T0001072;gene_id=HG003_chrY_G0000351;Parent=HG003_chrY_T0001072;transcript_name=HG003_chrY_T0001072;gene_name=ENSG00000290369;ID=exon:HG003_chrY_T0001072:6;Name=ENSG00000290369;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10182549	10184528	.	+	.	source_gene_common_name=TTTY23B;source_gene=ENSG00000250204.3;gene_id=HG003_chrY_G0000352;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TTTY23B;gene_sources=liftoff;ID=HG003_chrY_G0000352;Name=TTTY23B
HG003_chrY	CAT	transcript	10182549	10184528	1000	+	.	source_transcript=ENST00000442790.2;source_transcript_name=TTTY23B-201;source_gene=ENSG00000250204.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000250204.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442790.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442790.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;transcript_id=HG003_chrY_T0001073;gene_id=HG003_chrY_G0000352;Parent=HG003_chrY_G0000352;transcript_name=HG003_chrY_T0001073;gene_name=TTTY23B;ID=HG003_chrY_T0001073;Name=TTTY23B
HG003_chrY	CAT	exon	10182549	10182860	.	+	.	source_transcript=ENST00000442790.2;source_transcript_name=TTTY23B-201;source_gene=ENSG00000250204.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000250204.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442790.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442790.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;transcript_id=HG003_chrY_T0001073;gene_id=HG003_chrY_G0000352;Parent=HG003_chrY_T0001073;transcript_name=HG003_chrY_T0001073;gene_name=TTTY23B;ID=exon:HG003_chrY_T0001073:0;Name=TTTY23B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10182861	10184179	.	+	.	source_transcript=ENST00000442790.2;source_transcript_name=TTTY23B-201;source_gene=ENSG00000250204.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000250204.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442790.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442790.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;transcript_id=HG003_chrY_T0001073;gene_id=HG003_chrY_G0000352;Parent=HG003_chrY_T0001073;transcript_name=HG003_chrY_T0001073;gene_name=TTTY23B;ID=intron:HG003_chrY_T0001073:0;Name=TTTY23B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10184180	10184270	.	+	.	source_transcript=ENST00000442790.2;source_transcript_name=TTTY23B-201;source_gene=ENSG00000250204.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000250204.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442790.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442790.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;transcript_id=HG003_chrY_T0001073;gene_id=HG003_chrY_G0000352;Parent=HG003_chrY_T0001073;transcript_name=HG003_chrY_T0001073;gene_name=TTTY23B;ID=exon:HG003_chrY_T0001073:1;Name=TTTY23B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10184271	10184382	.	+	.	source_transcript=ENST00000442790.2;source_transcript_name=TTTY23B-201;source_gene=ENSG00000250204.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000250204.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442790.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442790.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;transcript_id=HG003_chrY_T0001073;gene_id=HG003_chrY_G0000352;Parent=HG003_chrY_T0001073;transcript_name=HG003_chrY_T0001073;gene_name=TTTY23B;ID=intron:HG003_chrY_T0001073:1;Name=TTTY23B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10184383	10184528	.	+	.	source_transcript=ENST00000442790.2;source_transcript_name=TTTY23B-201;source_gene=ENSG00000250204.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000250204.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442790.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442790.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY23B;transcript_id=HG003_chrY_T0001073;gene_id=HG003_chrY_G0000352;Parent=HG003_chrY_T0001073;transcript_name=HG003_chrY_T0001073;gene_name=TTTY23B;ID=exon:HG003_chrY_T0001073:2;Name=TTTY23B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10224996	10232864	.	+	.	source_gene_common_name=RBMY2OP;source_gene=ENSG00000234950.1;alternative_source_transcripts=ENST00000447105.1;gene_id=HG003_chrY_G0000353;gene_biotype=unprocessed_pseudogene;gene_name=RBMY2OP;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000353;Name=RBMY2OP
HG003_chrY	CAT	transcript	10224996	10232864	1000	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=transMap;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;alternative_source_transcripts=ENST00000447105.1;transcript_id=HG003_chrY_T0001074;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_G0000353;transcript_name=HG003_chrY_T0001074;gene_name=RBMY2OP;ID=HG003_chrY_T0001074;Name=RBMY2OP
HG003_chrY	CAT	exon	10224996	10225104	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=transMap;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;alternative_source_transcripts=ENST00000447105.1;transcript_id=HG003_chrY_T0001074;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001074;transcript_name=HG003_chrY_T0001074;gene_name=RBMY2OP;ID=exon:HG003_chrY_T0001074:0;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10225105	10225563	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=transMap;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;alternative_source_transcripts=ENST00000447105.1;transcript_id=HG003_chrY_T0001074;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001074;transcript_name=HG003_chrY_T0001074;gene_name=RBMY2OP;ID=intron:HG003_chrY_T0001074:0;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10225564	10225639	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=transMap;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;alternative_source_transcripts=ENST00000447105.1;transcript_id=HG003_chrY_T0001074;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001074;transcript_name=HG003_chrY_T0001074;gene_name=RBMY2OP;ID=exon:HG003_chrY_T0001074:1;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10225640	10230880	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=transMap;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;alternative_source_transcripts=ENST00000447105.1;transcript_id=HG003_chrY_T0001074;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001074;transcript_name=HG003_chrY_T0001074;gene_name=RBMY2OP;ID=intron:HG003_chrY_T0001074:1;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10230881	10230993	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=transMap;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;alternative_source_transcripts=ENST00000447105.1;transcript_id=HG003_chrY_T0001074;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001074;transcript_name=HG003_chrY_T0001074;gene_name=RBMY2OP;ID=exon:HG003_chrY_T0001074:2;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10230994	10231859	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=transMap;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;alternative_source_transcripts=ENST00000447105.1;transcript_id=HG003_chrY_T0001074;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001074;transcript_name=HG003_chrY_T0001074;gene_name=RBMY2OP;ID=intron:HG003_chrY_T0001074:2;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10231860	10232139	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=transMap;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;alternative_source_transcripts=ENST00000447105.1;transcript_id=HG003_chrY_T0001074;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001074;transcript_name=HG003_chrY_T0001074;gene_name=RBMY2OP;ID=exon:HG003_chrY_T0001074:3;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10232140	10232552	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=transMap;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;alternative_source_transcripts=ENST00000447105.1;transcript_id=HG003_chrY_T0001074;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001074;transcript_name=HG003_chrY_T0001074;gene_name=RBMY2OP;ID=intron:HG003_chrY_T0001074:3;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10232553	10232864	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=transMap;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;alternative_source_transcripts=ENST00000447105.1;transcript_id=HG003_chrY_T0001074;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001074;transcript_name=HG003_chrY_T0001074;gene_name=RBMY2OP;ID=exon:HG003_chrY_T0001074:4;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10224996	10232864	1000	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;transcript_id=HG003_chrY_T0001075;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_G0000353;transcript_name=HG003_chrY_T0001075;gene_name=RBMY2OP;ID=HG003_chrY_T0001075;Name=RBMY2OP
HG003_chrY	CAT	exon	10224996	10225104	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;transcript_id=HG003_chrY_T0001075;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001075;transcript_name=HG003_chrY_T0001075;gene_name=RBMY2OP;ID=exon:HG003_chrY_T0001075:0;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10225105	10225563	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;transcript_id=HG003_chrY_T0001075;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001075;transcript_name=HG003_chrY_T0001075;gene_name=RBMY2OP;ID=intron:HG003_chrY_T0001075:0;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10225564	10225639	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;transcript_id=HG003_chrY_T0001075;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001075;transcript_name=HG003_chrY_T0001075;gene_name=RBMY2OP;ID=exon:HG003_chrY_T0001075:1;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10225640	10230880	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;transcript_id=HG003_chrY_T0001075;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001075;transcript_name=HG003_chrY_T0001075;gene_name=RBMY2OP;ID=intron:HG003_chrY_T0001075:1;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10230881	10230993	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;transcript_id=HG003_chrY_T0001075;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001075;transcript_name=HG003_chrY_T0001075;gene_name=RBMY2OP;ID=exon:HG003_chrY_T0001075:2;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10230994	10231859	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;transcript_id=HG003_chrY_T0001075;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001075;transcript_name=HG003_chrY_T0001075;gene_name=RBMY2OP;ID=intron:HG003_chrY_T0001075:2;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10231860	10231970	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;transcript_id=HG003_chrY_T0001075;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001075;transcript_name=HG003_chrY_T0001075;gene_name=RBMY2OP;ID=exon:HG003_chrY_T0001075:3;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10231971	10232050	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;transcript_id=HG003_chrY_T0001075;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001075;transcript_name=HG003_chrY_T0001075;gene_name=RBMY2OP;ID=intron:HG003_chrY_T0001075:3;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10232051	10232139	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;transcript_id=HG003_chrY_T0001075;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001075;transcript_name=HG003_chrY_T0001075;gene_name=RBMY2OP;ID=exon:HG003_chrY_T0001075:4;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10232140	10232552	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;transcript_id=HG003_chrY_T0001075;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001075;transcript_name=HG003_chrY_T0001075;gene_name=RBMY2OP;ID=intron:HG003_chrY_T0001075:4;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10232553	10232864	.	+	.	source_transcript=ENST00000447105.1;source_transcript_name=RBMY2OP-201;source_gene=ENSG00000234950.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234950.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447105.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447105.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2OP;transcript_id=HG003_chrY_T0001075;gene_id=HG003_chrY_G0000353;Parent=HG003_chrY_T0001075;transcript_name=HG003_chrY_T0001075;gene_name=RBMY2OP;ID=exon:HG003_chrY_T0001075:5;Name=RBMY2OP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10227973	10308761	.	-	.	source_gene_common_name=ENSG00000290344;source_gene=ENSG00000290344.2;gene_id=HG003_chrY_G0000354;gene_biotype=lncRNA;gene_name=ENSG00000290344;gene_sources=liftoff;ID=HG003_chrY_G0000354;Name=ENSG00000290344
HG003_chrY	CAT	transcript	10227973	10308758	1000	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=HG003_chrY_T0001076;Name=ENSG00000290344
HG003_chrY	CAT	exon	10227973	10228133	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001076:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10228134	10262629	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001076:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10262630	10262679	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001076:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10262680	10269037	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001076:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10269038	10269156	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001076:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10269157	10296653	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001076:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001076:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001076:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001076:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001076:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001076:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10303847	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001076:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001076:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307013	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001076:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307014	10307114	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001076:7;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307115	10307546	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001076:7;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001076:8;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308612	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001076:8;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308613	10308758	.	-	.	source_transcript=ENST00000651645.1;source_transcript_name=ENST00000651645;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001076;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001076;transcript_name=HG003_chrY_T0001076;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001076:9;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10227973	10308724	1000	-	.	source_transcript=ENST00000787703.1;source_transcript_name=ENST00000787703;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787703.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001077;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001077;gene_name=ENSG00000290344;ID=HG003_chrY_T0001077;Name=ENSG00000290344
HG003_chrY	CAT	exon	10227973	10228133	.	-	.	source_transcript=ENST00000787703.1;source_transcript_name=ENST00000787703;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787703.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001077;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001077;transcript_name=HG003_chrY_T0001077;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001077:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10228134	10296653	.	-	.	source_transcript=ENST00000787703.1;source_transcript_name=ENST00000787703;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787703.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001077;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001077;transcript_name=HG003_chrY_T0001077;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001077:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787703.1;source_transcript_name=ENST00000787703;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787703.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001077;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001077;transcript_name=HG003_chrY_T0001077;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001077:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787703.1;source_transcript_name=ENST00000787703;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787703.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001077;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001077;transcript_name=HG003_chrY_T0001077;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001077:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787703.1;source_transcript_name=ENST00000787703;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787703.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001077;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001077;transcript_name=HG003_chrY_T0001077;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001077:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787703.1;source_transcript_name=ENST00000787703;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787703.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001077;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001077;transcript_name=HG003_chrY_T0001077;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001077:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787703.1;source_transcript_name=ENST00000787703;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787703.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001077;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001077;transcript_name=HG003_chrY_T0001077;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001077:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10308612	.	-	.	source_transcript=ENST00000787703.1;source_transcript_name=ENST00000787703;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787703.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001077;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001077;transcript_name=HG003_chrY_T0001077;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001077:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308613	10308724	.	-	.	source_transcript=ENST00000787703.1;source_transcript_name=ENST00000787703;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787703.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787703.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001077;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001077;transcript_name=HG003_chrY_T0001077;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001077:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10265070	10308724	1000	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=HG003_chrY_T0001078;Name=ENSG00000290344
HG003_chrY	CAT	exon	10265070	10265651	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001078:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10265652	10269037	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001078:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10269038	10269156	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001078:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10269157	10296653	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001078:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001078:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001078:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001078:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001078:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001078:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10307546	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001078:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001078:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308612	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001078:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308613	10308724	.	-	.	source_transcript=ENST00000787704.1;source_transcript_name=ENST00000787704;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001078;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001078;transcript_name=HG003_chrY_T0001078;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001078:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10269582	10308722	1000	-	.	source_transcript=ENST00000787708.1;source_transcript_name=ENST00000787708;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787708.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001079;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001079;gene_name=ENSG00000290344;ID=HG003_chrY_T0001079;Name=ENSG00000290344
HG003_chrY	CAT	exon	10269582	10269909	.	-	.	source_transcript=ENST00000787708.1;source_transcript_name=ENST00000787708;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001079;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001079;transcript_name=HG003_chrY_T0001079;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001079:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10269910	10296653	.	-	.	source_transcript=ENST00000787708.1;source_transcript_name=ENST00000787708;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001079;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001079;transcript_name=HG003_chrY_T0001079;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001079:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787708.1;source_transcript_name=ENST00000787708;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001079;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001079;transcript_name=HG003_chrY_T0001079;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001079:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787708.1;source_transcript_name=ENST00000787708;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001079;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001079;transcript_name=HG003_chrY_T0001079;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001079:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787708.1;source_transcript_name=ENST00000787708;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001079;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001079;transcript_name=HG003_chrY_T0001079;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001079:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787708.1;source_transcript_name=ENST00000787708;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001079;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001079;transcript_name=HG003_chrY_T0001079;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001079:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787708.1;source_transcript_name=ENST00000787708;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001079;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001079;transcript_name=HG003_chrY_T0001079;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001079:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10303847	.	-	.	source_transcript=ENST00000787708.1;source_transcript_name=ENST00000787708;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001079;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001079;transcript_name=HG003_chrY_T0001079;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001079:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000787708.1;source_transcript_name=ENST00000787708;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001079;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001079;transcript_name=HG003_chrY_T0001079;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001079:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10308581	.	-	.	source_transcript=ENST00000787708.1;source_transcript_name=ENST00000787708;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001079;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001079;transcript_name=HG003_chrY_T0001079;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001079:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308582	10308722	.	-	.	source_transcript=ENST00000787708.1;source_transcript_name=ENST00000787708;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001079;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001079;transcript_name=HG003_chrY_T0001079;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001079:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10269582	10308724	1000	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=HG003_chrY_T0001080;Name=ENSG00000290344
HG003_chrY	CAT	exon	10269582	10269909	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001080:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10269910	10296653	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001080:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001080:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001080:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001080:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001080:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001080:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10303847	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001080:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001080:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307013	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001080:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307014	10307114	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001080:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307115	10307546	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001080:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001080:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308612	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001080:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308613	10308724	.	-	.	source_transcript=ENST00000787707.1;source_transcript_name=ENST00000787707;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001080;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001080;transcript_name=HG003_chrY_T0001080;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001080:7;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10269585	10308740	1000	-	.	source_transcript=ENST00000787706.1;source_transcript_name=ENST00000787706;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787706.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001081;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001081;gene_name=ENSG00000290344;ID=HG003_chrY_T0001081;Name=ENSG00000290344
HG003_chrY	CAT	exon	10269585	10269909	.	-	.	source_transcript=ENST00000787706.1;source_transcript_name=ENST00000787706;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001081;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001081;transcript_name=HG003_chrY_T0001081;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001081:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10269910	10296653	.	-	.	source_transcript=ENST00000787706.1;source_transcript_name=ENST00000787706;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001081;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001081;transcript_name=HG003_chrY_T0001081;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001081:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787706.1;source_transcript_name=ENST00000787706;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001081;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001081;transcript_name=HG003_chrY_T0001081;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001081:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787706.1;source_transcript_name=ENST00000787706;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001081;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001081;transcript_name=HG003_chrY_T0001081;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001081:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787706.1;source_transcript_name=ENST00000787706;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001081;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001081;transcript_name=HG003_chrY_T0001081;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001081:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787706.1;source_transcript_name=ENST00000787706;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001081;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001081;transcript_name=HG003_chrY_T0001081;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001081:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787706.1;source_transcript_name=ENST00000787706;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001081;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001081;transcript_name=HG003_chrY_T0001081;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001081:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10308581	.	-	.	source_transcript=ENST00000787706.1;source_transcript_name=ENST00000787706;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001081;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001081;transcript_name=HG003_chrY_T0001081;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001081:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308582	10308740	.	-	.	source_transcript=ENST00000787706.1;source_transcript_name=ENST00000787706;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001081;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001081;transcript_name=HG003_chrY_T0001081;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001081:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10269596	10308724	1000	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=HG003_chrY_T0001082;Name=ENSG00000290344
HG003_chrY	CAT	exon	10269596	10269909	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001082:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10269910	10296653	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001082:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001082:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001082:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001082:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001082:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001082:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10303847	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001082:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001082:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307546	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001082:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001082:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308612	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001082:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308613	10308724	.	-	.	source_transcript=ENST00000787709.1;source_transcript_name=ENST00000787709;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787709.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787709.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001082;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001082;transcript_name=HG003_chrY_T0001082;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001082:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10269596	10308761	1000	-	.	source_transcript=ENST00000787705.1;source_transcript_name=ENST00000787705;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787705.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001083;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001083;gene_name=ENSG00000290344;ID=HG003_chrY_T0001083;Name=ENSG00000290344
HG003_chrY	CAT	exon	10269596	10269909	.	-	.	source_transcript=ENST00000787705.1;source_transcript_name=ENST00000787705;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001083;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001083;transcript_name=HG003_chrY_T0001083;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001083:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10269910	10296653	.	-	.	source_transcript=ENST00000787705.1;source_transcript_name=ENST00000787705;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001083;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001083;transcript_name=HG003_chrY_T0001083;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001083:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787705.1;source_transcript_name=ENST00000787705;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001083;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001083;transcript_name=HG003_chrY_T0001083;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001083:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787705.1;source_transcript_name=ENST00000787705;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001083;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001083;transcript_name=HG003_chrY_T0001083;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001083:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787705.1;source_transcript_name=ENST00000787705;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001083;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001083;transcript_name=HG003_chrY_T0001083;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001083:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787705.1;source_transcript_name=ENST00000787705;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001083;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001083;transcript_name=HG003_chrY_T0001083;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001083:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787705.1;source_transcript_name=ENST00000787705;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001083;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001083;transcript_name=HG003_chrY_T0001083;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001083:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10308612	.	-	.	source_transcript=ENST00000787705.1;source_transcript_name=ENST00000787705;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001083;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001083;transcript_name=HG003_chrY_T0001083;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001083:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308613	10308761	.	-	.	source_transcript=ENST00000787705.1;source_transcript_name=ENST00000787705;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001083;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001083;transcript_name=HG003_chrY_T0001083;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001083:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10278039	10308764	1000	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=HG003_chrY_T0001084;Name=ENSG00000290344
HG003_chrY	CAT	exon	10278039	10278625	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001084:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10278626	10296653	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001084:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001084:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001084:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001084:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001084:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001084:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10303847	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001084:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001084:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307013	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001084:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307014	10307114	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001084:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307115	10307546	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001084:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001084:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308581	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001084:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308582	10308764	.	-	.	source_transcript=ENST00000787710.1;source_transcript_name=ENST00000787710;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787710.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787710.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001084;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001084;transcript_name=HG003_chrY_T0001084;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001084:7;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10278415	10308790	1000	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=HG003_chrY_T0001085;Name=ENSG00000290344
HG003_chrY	CAT	exon	10278415	10278625	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001085:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10278626	10296653	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001085:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001085:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001085:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001085:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001085:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001085:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10303847	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001085:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001085:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307546	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001085:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001085:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308581	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001085:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308582	10308790	.	-	.	source_transcript=ENST00000787711.1;source_transcript_name=ENST00000787711;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787711.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787711.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001085;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001085;transcript_name=HG003_chrY_T0001085;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001085:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10286528	10308738	1000	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=HG003_chrY_T0001086;Name=ENSG00000290344
HG003_chrY	CAT	exon	10286528	10286792	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001086:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10286793	10296653	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001086:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001086:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001086:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001086:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001086:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001086:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10303847	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001086:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001086:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307013	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001086:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307014	10307114	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001086:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307115	10307546	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001086:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001086:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308581	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001086:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308582	10308738	.	-	.	source_transcript=ENST00000787712.1;source_transcript_name=ENST00000787712;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787712.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001086;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001086;transcript_name=HG003_chrY_T0001086;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001086:7;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10295663	10308738	1000	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=HG003_chrY_T0001087;Name=ENSG00000290344
HG003_chrY	CAT	exon	10295663	10296052	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001087:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296053	10296653	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001087:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001087:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001087:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001087:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001087:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001087:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10303847	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001087:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001087:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307546	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001087:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001087:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308581	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001087:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308582	10308738	.	-	.	source_transcript=ENST00000787717.1;source_transcript_name=ENST00000787717;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787717.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787717.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001087;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001087;transcript_name=HG003_chrY_T0001087;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001087:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10295665	10308743	1000	-	.	source_transcript=ENST00000787716.1;source_transcript_name=ENST00000787716;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787716.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001088;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001088;gene_name=ENSG00000290344;ID=HG003_chrY_T0001088;Name=ENSG00000290344
HG003_chrY	CAT	exon	10295665	10296052	.	-	.	source_transcript=ENST00000787716.1;source_transcript_name=ENST00000787716;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787716.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001088;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001088;transcript_name=HG003_chrY_T0001088;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001088:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296053	10296653	.	-	.	source_transcript=ENST00000787716.1;source_transcript_name=ENST00000787716;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787716.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001088;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001088;transcript_name=HG003_chrY_T0001088;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001088:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787716.1;source_transcript_name=ENST00000787716;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787716.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001088;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001088;transcript_name=HG003_chrY_T0001088;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001088:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787716.1;source_transcript_name=ENST00000787716;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787716.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001088;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001088;transcript_name=HG003_chrY_T0001088;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001088:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787716.1;source_transcript_name=ENST00000787716;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787716.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001088;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001088;transcript_name=HG003_chrY_T0001088;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001088:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787716.1;source_transcript_name=ENST00000787716;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787716.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001088;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001088;transcript_name=HG003_chrY_T0001088;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001088:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787716.1;source_transcript_name=ENST00000787716;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787716.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001088;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001088;transcript_name=HG003_chrY_T0001088;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001088:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10303847	.	-	.	source_transcript=ENST00000787716.1;source_transcript_name=ENST00000787716;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787716.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001088;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001088;transcript_name=HG003_chrY_T0001088;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001088:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000787716.1;source_transcript_name=ENST00000787716;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787716.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001088;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001088;transcript_name=HG003_chrY_T0001088;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001088:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10308581	.	-	.	source_transcript=ENST00000787716.1;source_transcript_name=ENST00000787716;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787716.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001088;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001088;transcript_name=HG003_chrY_T0001088;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001088:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308582	10308743	.	-	.	source_transcript=ENST00000787716.1;source_transcript_name=ENST00000787716;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787716.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787716.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001088;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001088;transcript_name=HG003_chrY_T0001088;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001088:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10295665	10308761	1000	-	.	source_transcript=ENST00000787714.1;source_transcript_name=ENST00000787714;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787714.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001089;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001089;gene_name=ENSG00000290344;ID=HG003_chrY_T0001089;Name=ENSG00000290344
HG003_chrY	CAT	exon	10295665	10296052	.	-	.	source_transcript=ENST00000787714.1;source_transcript_name=ENST00000787714;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787714.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001089;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001089;transcript_name=HG003_chrY_T0001089;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001089:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296053	10296653	.	-	.	source_transcript=ENST00000787714.1;source_transcript_name=ENST00000787714;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787714.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001089;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001089;transcript_name=HG003_chrY_T0001089;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001089:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787714.1;source_transcript_name=ENST00000787714;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787714.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001089;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001089;transcript_name=HG003_chrY_T0001089;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001089:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787714.1;source_transcript_name=ENST00000787714;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787714.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001089;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001089;transcript_name=HG003_chrY_T0001089;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001089:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787714.1;source_transcript_name=ENST00000787714;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787714.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001089;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001089;transcript_name=HG003_chrY_T0001089;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001089:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787714.1;source_transcript_name=ENST00000787714;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787714.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001089;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001089;transcript_name=HG003_chrY_T0001089;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001089:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787714.1;source_transcript_name=ENST00000787714;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787714.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001089;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001089;transcript_name=HG003_chrY_T0001089;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001089:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10308612	.	-	.	source_transcript=ENST00000787714.1;source_transcript_name=ENST00000787714;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787714.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001089;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001089;transcript_name=HG003_chrY_T0001089;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001089:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308613	10308761	.	-	.	source_transcript=ENST00000787714.1;source_transcript_name=ENST00000787714;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787714.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787714.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001089;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001089;transcript_name=HG003_chrY_T0001089;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001089:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10295665	10308739	1000	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=HG003_chrY_T0001090;Name=ENSG00000290344
HG003_chrY	CAT	exon	10295665	10296052	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001090:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296053	10296653	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001090:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001090:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001090:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001090:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001090:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001090:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10303847	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001090:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001090:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307013	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001090:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307014	10307114	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001090:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307115	10307546	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001090:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001090:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308612	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001090:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308613	10308739	.	-	.	source_transcript=ENST00000787718.1;source_transcript_name=ENST00000787718;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787718.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787718.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001090;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001090;transcript_name=HG003_chrY_T0001090;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001090:7;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10295665	10308743	1000	-	.	source_transcript=ENST00000787715.1;source_transcript_name=ENST00000787715;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787715.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001091;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001091;gene_name=ENSG00000290344;ID=HG003_chrY_T0001091;Name=ENSG00000290344
HG003_chrY	CAT	exon	10295665	10296052	.	-	.	source_transcript=ENST00000787715.1;source_transcript_name=ENST00000787715;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787715.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001091;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001091;transcript_name=HG003_chrY_T0001091;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001091:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296053	10296653	.	-	.	source_transcript=ENST00000787715.1;source_transcript_name=ENST00000787715;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787715.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001091;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001091;transcript_name=HG003_chrY_T0001091;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001091:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787715.1;source_transcript_name=ENST00000787715;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787715.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001091;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001091;transcript_name=HG003_chrY_T0001091;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001091:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787715.1;source_transcript_name=ENST00000787715;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787715.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001091;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001091;transcript_name=HG003_chrY_T0001091;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001091:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787715.1;source_transcript_name=ENST00000787715;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787715.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001091;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001091;transcript_name=HG003_chrY_T0001091;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001091:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787715.1;source_transcript_name=ENST00000787715;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787715.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001091;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001091;transcript_name=HG003_chrY_T0001091;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001091:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787715.1;source_transcript_name=ENST00000787715;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787715.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001091;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001091;transcript_name=HG003_chrY_T0001091;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001091:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10307546	.	-	.	source_transcript=ENST00000787715.1;source_transcript_name=ENST00000787715;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787715.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001091;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001091;transcript_name=HG003_chrY_T0001091;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001091:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787715.1;source_transcript_name=ENST00000787715;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787715.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001091;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001091;transcript_name=HG003_chrY_T0001091;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001091:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308612	.	-	.	source_transcript=ENST00000787715.1;source_transcript_name=ENST00000787715;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787715.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001091;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001091;transcript_name=HG003_chrY_T0001091;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001091:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308613	10308743	.	-	.	source_transcript=ENST00000787715.1;source_transcript_name=ENST00000787715;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787715.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787715.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001091;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001091;transcript_name=HG003_chrY_T0001091;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001091:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10295665	10308761	1000	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=HG003_chrY_T0001092;Name=ENSG00000290344
HG003_chrY	CAT	exon	10295665	10296052	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001092:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296053	10296653	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001092:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001092:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001092:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001092:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001092:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001092:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10303847	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001092:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001092:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307546	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001092:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001092:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308612	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001092:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308613	10308761	.	-	.	source_transcript=ENST00000787713.1;source_transcript_name=ENST00000787713;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787713.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001092;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001092;transcript_name=HG003_chrY_T0001092;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001092:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10295846	10308722	1000	-	.	source_transcript=ENST00000787719.1;source_transcript_name=ENST00000787719;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787719.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001093;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001093;gene_name=ENSG00000290344;ID=HG003_chrY_T0001093;Name=ENSG00000290344
HG003_chrY	CAT	exon	10295846	10296052	.	-	.	source_transcript=ENST00000787719.1;source_transcript_name=ENST00000787719;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001093;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001093;transcript_name=HG003_chrY_T0001093;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001093:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296053	10296653	.	-	.	source_transcript=ENST00000787719.1;source_transcript_name=ENST00000787719;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001093;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001093;transcript_name=HG003_chrY_T0001093;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001093:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000787719.1;source_transcript_name=ENST00000787719;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001093;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001093;transcript_name=HG003_chrY_T0001093;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001093:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787719.1;source_transcript_name=ENST00000787719;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001093;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001093;transcript_name=HG003_chrY_T0001093;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001093:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787719.1;source_transcript_name=ENST00000787719;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001093;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001093;transcript_name=HG003_chrY_T0001093;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001093:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787719.1;source_transcript_name=ENST00000787719;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001093;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001093;transcript_name=HG003_chrY_T0001093;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001093:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787719.1;source_transcript_name=ENST00000787719;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001093;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001093;transcript_name=HG003_chrY_T0001093;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001093:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10307546	.	-	.	source_transcript=ENST00000787719.1;source_transcript_name=ENST00000787719;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001093;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001093;transcript_name=HG003_chrY_T0001093;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001093:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787719.1;source_transcript_name=ENST00000787719;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001093;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001093;transcript_name=HG003_chrY_T0001093;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001093:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308581	.	-	.	source_transcript=ENST00000787719.1;source_transcript_name=ENST00000787719;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001093;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001093;transcript_name=HG003_chrY_T0001093;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001093:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308582	10308722	.	-	.	source_transcript=ENST00000787719.1;source_transcript_name=ENST00000787719;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001093;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001093;transcript_name=HG003_chrY_T0001093;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001093:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10296430	10308743	1000	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=HG003_chrY_T0001095;Name=ENSG00000290344
HG003_chrY	CAT	exon	10296430	10296742	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001095:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001095:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001095:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10299968	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001095:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300077	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001095:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300078	10303847	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001095:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001095:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307013	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001095:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307014	10307114	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001095:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307115	10307546	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001095:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001095:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308612	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001095:5;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308613	10308743	.	-	.	source_transcript=ENST00000787720.1;source_transcript_name=ENST00000787720;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001095;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001095;transcript_name=HG003_chrY_T0001095;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001095:6;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10302787	10308736	1000	-	.	source_transcript=ENST00000787721.1;source_transcript_name=ENST00000787721;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787721.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001096;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001096;gene_name=ENSG00000290344;ID=HG003_chrY_T0001096;Name=ENSG00000290344
HG003_chrY	CAT	exon	10302787	10302974	.	-	.	source_transcript=ENST00000787721.1;source_transcript_name=ENST00000787721;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001096;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001096;transcript_name=HG003_chrY_T0001096;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001096:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10302975	10303847	.	-	.	source_transcript=ENST00000787721.1;source_transcript_name=ENST00000787721;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001096;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001096;transcript_name=HG003_chrY_T0001096;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001096:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000787721.1;source_transcript_name=ENST00000787721;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001096;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001096;transcript_name=HG003_chrY_T0001096;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001096:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307013	.	-	.	source_transcript=ENST00000787721.1;source_transcript_name=ENST00000787721;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001096;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001096;transcript_name=HG003_chrY_T0001096;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001096:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307014	10307114	.	-	.	source_transcript=ENST00000787721.1;source_transcript_name=ENST00000787721;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001096;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001096;transcript_name=HG003_chrY_T0001096;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001096:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307115	10307546	.	-	.	source_transcript=ENST00000787721.1;source_transcript_name=ENST00000787721;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001096;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001096;transcript_name=HG003_chrY_T0001096;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001096:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787721.1;source_transcript_name=ENST00000787721;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001096;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001096;transcript_name=HG003_chrY_T0001096;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001096:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308581	.	-	.	source_transcript=ENST00000787721.1;source_transcript_name=ENST00000787721;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001096;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001096;transcript_name=HG003_chrY_T0001096;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001096:3;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308582	10308736	.	-	.	source_transcript=ENST00000787721.1;source_transcript_name=ENST00000787721;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001096;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001096;transcript_name=HG003_chrY_T0001096;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001096:4;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	10303314	10308726	1000	-	.	source_transcript=ENST00000787722.1;source_transcript_name=ENST00000787722;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787722.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001097;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_G0000354;transcript_name=HG003_chrY_T0001097;gene_name=ENSG00000290344;ID=HG003_chrY_T0001097;Name=ENSG00000290344
HG003_chrY	CAT	exon	10303314	10304025	.	-	.	source_transcript=ENST00000787722.1;source_transcript_name=ENST00000787722;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001097;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001097;transcript_name=HG003_chrY_T0001097;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001097:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307546	.	-	.	source_transcript=ENST00000787722.1;source_transcript_name=ENST00000787722;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001097;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001097;transcript_name=HG003_chrY_T0001097;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001097:0;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000787722.1;source_transcript_name=ENST00000787722;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001097;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001097;transcript_name=HG003_chrY_T0001097;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001097:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307647	10308581	.	-	.	source_transcript=ENST00000787722.1;source_transcript_name=ENST00000787722;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001097;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001097;transcript_name=HG003_chrY_T0001097;gene_name=ENSG00000290344;ID=intron:HG003_chrY_T0001097:1;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10308582	10308726	.	-	.	source_transcript=ENST00000787722.1;source_transcript_name=ENST00000787722;source_gene=ENSG00000290344.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290344.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000787722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000787722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290344;transcript_id=HG003_chrY_T0001097;gene_id=HG003_chrY_G0000354;Parent=HG003_chrY_T0001097;transcript_name=HG003_chrY_T0001097;gene_name=ENSG00000290344;ID=exon:HG003_chrY_T0001097:2;Name=ENSG00000290344;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10295948	10307646	.	-	.	source_gene_common_name=RBMY2QP;source_gene=ENSG00000236718.5;gene_id=HG003_chrY_G0000355;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RBMY2QP;gene_sources=liftoff;ID=HG003_chrY_G0000355;Name=RBMY2QP
HG003_chrY	CAT	transcript	10295948	10307646	1000	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_G0000355;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=HG003_chrY_T0001094;Name=RBMY2QP
HG003_chrY	CAT	exon	10295948	10296248	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=exon:HG003_chrY_T0001094:0;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296249	10296653	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=intron:HG003_chrY_T0001094:0;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296654	10296742	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=exon:HG003_chrY_T0001094:1;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296743	10296828	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=intron:HG003_chrY_T0001094:1;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10296829	10296939	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=exon:HG003_chrY_T0001094:2;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10296940	10297815	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=intron:HG003_chrY_T0001094:2;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10297816	10297930	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=exon:HG003_chrY_T0001094:3;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10297931	10299968	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=intron:HG003_chrY_T0001094:3;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10299969	10300120	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=exon:HG003_chrY_T0001094:4;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10300121	10303847	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=intron:HG003_chrY_T0001094:4;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10303848	10304025	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=exon:HG003_chrY_T0001094:5;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10304026	10307013	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=intron:HG003_chrY_T0001094:5;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307014	10307114	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=exon:HG003_chrY_T0001094:6;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10307115	10307546	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=intron:HG003_chrY_T0001094:6;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10307547	10307646	.	-	.	source_transcript=ENST00000429799.1;source_transcript_name=RBMY2QP-201;source_gene=ENSG00000236718.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000236718.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000429799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2QP;transcript_id=HG003_chrY_T0001094;gene_id=HG003_chrY_G0000355;Parent=HG003_chrY_T0001094;transcript_name=HG003_chrY_T0001094;gene_name=RBMY2QP;ID=exon:HG003_chrY_T0001094:7;Name=RBMY2QP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10309654	10311834	.	+	.	source_gene_common_name=TSPY20P;source_gene=ENSG00000243643.1;alternative_source_transcripts=ENST00000450910.1,ENST00000450910.1;gene_id=HG003_chrY_G0000356;gene_biotype=unprocessed_pseudogene;gene_name=TSPY20P;gene_sources=liftoff;ID=HG003_chrY_G0000356;Name=TSPY20P
HG003_chrY	CAT	transcript	10309654	10311834	1000	+	.	source_transcript=ENST00000450910.1;source_transcript_name=TSPY20P-201;source_gene=ENSG00000243643.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000243643.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450910.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450910.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY20P;alternative_source_transcripts=ENST00000450910.1,ENST00000450910.1;transcript_id=HG003_chrY_T0001098;gene_id=HG003_chrY_G0000356;Parent=HG003_chrY_G0000356;transcript_name=HG003_chrY_T0001098;gene_name=TSPY20P;ID=HG003_chrY_T0001098;Name=TSPY20P
HG003_chrY	CAT	exon	10309654	10310011	.	+	.	source_transcript=ENST00000450910.1;source_transcript_name=TSPY20P-201;source_gene=ENSG00000243643.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000243643.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450910.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450910.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY20P;alternative_source_transcripts=ENST00000450910.1,ENST00000450910.1;transcript_id=HG003_chrY_T0001098;gene_id=HG003_chrY_G0000356;Parent=HG003_chrY_T0001098;transcript_name=HG003_chrY_T0001098;gene_name=TSPY20P;ID=exon:HG003_chrY_T0001098:0;Name=TSPY20P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10310012	10311357	.	+	.	source_transcript=ENST00000450910.1;source_transcript_name=TSPY20P-201;source_gene=ENSG00000243643.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000243643.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450910.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450910.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY20P;alternative_source_transcripts=ENST00000450910.1,ENST00000450910.1;transcript_id=HG003_chrY_T0001098;gene_id=HG003_chrY_G0000356;Parent=HG003_chrY_T0001098;transcript_name=HG003_chrY_T0001098;gene_name=TSPY20P;ID=intron:HG003_chrY_T0001098:0;Name=TSPY20P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10311358	10311426	.	+	.	source_transcript=ENST00000450910.1;source_transcript_name=TSPY20P-201;source_gene=ENSG00000243643.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000243643.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450910.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450910.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY20P;alternative_source_transcripts=ENST00000450910.1,ENST00000450910.1;transcript_id=HG003_chrY_T0001098;gene_id=HG003_chrY_G0000356;Parent=HG003_chrY_T0001098;transcript_name=HG003_chrY_T0001098;gene_name=TSPY20P;ID=exon:HG003_chrY_T0001098:1;Name=TSPY20P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10311427	10311521	.	+	.	source_transcript=ENST00000450910.1;source_transcript_name=TSPY20P-201;source_gene=ENSG00000243643.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000243643.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450910.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450910.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY20P;alternative_source_transcripts=ENST00000450910.1,ENST00000450910.1;transcript_id=HG003_chrY_T0001098;gene_id=HG003_chrY_G0000356;Parent=HG003_chrY_T0001098;transcript_name=HG003_chrY_T0001098;gene_name=TSPY20P;ID=intron:HG003_chrY_T0001098:1;Name=TSPY20P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10311522	10311667	.	+	.	source_transcript=ENST00000450910.1;source_transcript_name=TSPY20P-201;source_gene=ENSG00000243643.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000243643.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450910.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450910.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY20P;alternative_source_transcripts=ENST00000450910.1,ENST00000450910.1;transcript_id=HG003_chrY_T0001098;gene_id=HG003_chrY_G0000356;Parent=HG003_chrY_T0001098;transcript_name=HG003_chrY_T0001098;gene_name=TSPY20P;ID=exon:HG003_chrY_T0001098:2;Name=TSPY20P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10311668	10311777	.	+	.	source_transcript=ENST00000450910.1;source_transcript_name=TSPY20P-201;source_gene=ENSG00000243643.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000243643.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450910.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450910.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY20P;alternative_source_transcripts=ENST00000450910.1,ENST00000450910.1;transcript_id=HG003_chrY_T0001098;gene_id=HG003_chrY_G0000356;Parent=HG003_chrY_T0001098;transcript_name=HG003_chrY_T0001098;gene_name=TSPY20P;ID=intron:HG003_chrY_T0001098:2;Name=TSPY20P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10311778	10311834	.	+	.	source_transcript=ENST00000450910.1;source_transcript_name=TSPY20P-201;source_gene=ENSG00000243643.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000243643.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450910.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450910.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY20P;alternative_source_transcripts=ENST00000450910.1,ENST00000450910.1;transcript_id=HG003_chrY_T0001098;gene_id=HG003_chrY_G0000356;Parent=HG003_chrY_T0001098;transcript_name=HG003_chrY_T0001098;gene_name=TSPY20P;ID=exon:HG003_chrY_T0001098:3;Name=TSPY20P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10340016	10340848	.	-	.	source_gene_common_name=ENSG00000290378;source_gene=ENSG00000290378.1;gene_id=HG003_chrY_G0000357;gene_biotype=lncRNA;gene_name=ENSG00000290378;gene_sources=liftoff;ID=HG003_chrY_G0000357;Name=ENSG00000290378
HG003_chrY	CAT	transcript	10340016	10340848	1000	-	.	source_transcript=ENST00000456541.1;source_transcript_name=ENST00000456541;source_gene=ENSG00000290378.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290378.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000456541.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456541.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290378;transcript_id=HG003_chrY_T0001099;gene_id=HG003_chrY_G0000357;Parent=HG003_chrY_G0000357;transcript_name=HG003_chrY_T0001099;gene_name=ENSG00000290378;ID=HG003_chrY_T0001099;Name=ENSG00000290378
HG003_chrY	CAT	exon	10340016	10340071	.	-	.	source_transcript=ENST00000456541.1;source_transcript_name=ENST00000456541;source_gene=ENSG00000290378.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290378.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000456541.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290378;transcript_id=HG003_chrY_T0001099;gene_id=HG003_chrY_G0000357;Parent=HG003_chrY_T0001099;transcript_name=HG003_chrY_T0001099;gene_name=ENSG00000290378;ID=exon:HG003_chrY_T0001099:0;Name=ENSG00000290378;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10340072	10340762	.	-	.	source_transcript=ENST00000456541.1;source_transcript_name=ENST00000456541;source_gene=ENSG00000290378.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290378.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000456541.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290378;transcript_id=HG003_chrY_T0001099;gene_id=HG003_chrY_G0000357;Parent=HG003_chrY_T0001099;transcript_name=HG003_chrY_T0001099;gene_name=ENSG00000290378;ID=intron:HG003_chrY_T0001099:0;Name=ENSG00000290378;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10340763	10340848	.	-	.	source_transcript=ENST00000456541.1;source_transcript_name=ENST00000456541;source_gene=ENSG00000290378.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290378.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000456541.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456541.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290378;transcript_id=HG003_chrY_T0001099;gene_id=HG003_chrY_G0000357;Parent=HG003_chrY_T0001099;transcript_name=HG003_chrY_T0001099;gene_name=ENSG00000290378;ID=exon:HG003_chrY_T0001099:1;Name=ENSG00000290378;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10340049	10342625	.	-	.	source_gene_common_name=TSPY5P;source_gene=ENSG00000225685.2;gene_id=HG003_chrY_G0000358;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TSPY5P;gene_sources=liftoff;ID=HG003_chrY_G0000358;Name=TSPY5P
HG003_chrY	CAT	transcript	10340049	10342625	1000	-	.	source_transcript=ENST00000426936.1;source_transcript_name=TSPY5P-201;source_gene=ENSG00000225685.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225685.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000426936.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426936.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY5P;transcript_id=HG003_chrY_T0001100;gene_id=HG003_chrY_G0000358;Parent=HG003_chrY_G0000358;transcript_name=HG003_chrY_T0001100;gene_name=TSPY5P;ID=HG003_chrY_T0001100;Name=TSPY5P
HG003_chrY	CAT	exon	10340049	10340071	.	-	.	source_transcript=ENST00000426936.1;source_transcript_name=TSPY5P-201;source_gene=ENSG00000225685.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225685.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000426936.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426936.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY5P;transcript_id=HG003_chrY_T0001100;gene_id=HG003_chrY_G0000358;Parent=HG003_chrY_T0001100;transcript_name=HG003_chrY_T0001100;gene_name=TSPY5P;ID=exon:HG003_chrY_T0001100:0;Name=TSPY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10340072	10340762	.	-	.	source_transcript=ENST00000426936.1;source_transcript_name=TSPY5P-201;source_gene=ENSG00000225685.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225685.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000426936.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426936.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY5P;transcript_id=HG003_chrY_T0001100;gene_id=HG003_chrY_G0000358;Parent=HG003_chrY_T0001100;transcript_name=HG003_chrY_T0001100;gene_name=TSPY5P;ID=intron:HG003_chrY_T0001100:0;Name=TSPY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10340763	10340844	.	-	.	source_transcript=ENST00000426936.1;source_transcript_name=TSPY5P-201;source_gene=ENSG00000225685.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225685.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000426936.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426936.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY5P;transcript_id=HG003_chrY_T0001100;gene_id=HG003_chrY_G0000358;Parent=HG003_chrY_T0001100;transcript_name=HG003_chrY_T0001100;gene_name=TSPY5P;ID=exon:HG003_chrY_T0001100:1;Name=TSPY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10340845	10340950	.	-	.	source_transcript=ENST00000426936.1;source_transcript_name=TSPY5P-201;source_gene=ENSG00000225685.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225685.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000426936.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426936.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY5P;transcript_id=HG003_chrY_T0001100;gene_id=HG003_chrY_G0000358;Parent=HG003_chrY_T0001100;transcript_name=HG003_chrY_T0001100;gene_name=TSPY5P;ID=intron:HG003_chrY_T0001100:1;Name=TSPY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10340951	10341096	.	-	.	source_transcript=ENST00000426936.1;source_transcript_name=TSPY5P-201;source_gene=ENSG00000225685.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225685.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000426936.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426936.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY5P;transcript_id=HG003_chrY_T0001100;gene_id=HG003_chrY_G0000358;Parent=HG003_chrY_T0001100;transcript_name=HG003_chrY_T0001100;gene_name=TSPY5P;ID=exon:HG003_chrY_T0001100:2;Name=TSPY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10341097	10341193	.	-	.	source_transcript=ENST00000426936.1;source_transcript_name=TSPY5P-201;source_gene=ENSG00000225685.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225685.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000426936.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426936.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY5P;transcript_id=HG003_chrY_T0001100;gene_id=HG003_chrY_G0000358;Parent=HG003_chrY_T0001100;transcript_name=HG003_chrY_T0001100;gene_name=TSPY5P;ID=intron:HG003_chrY_T0001100:2;Name=TSPY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10341194	10341305	.	-	.	source_transcript=ENST00000426936.1;source_transcript_name=TSPY5P-201;source_gene=ENSG00000225685.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225685.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000426936.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426936.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY5P;transcript_id=HG003_chrY_T0001100;gene_id=HG003_chrY_G0000358;Parent=HG003_chrY_T0001100;transcript_name=HG003_chrY_T0001100;gene_name=TSPY5P;ID=exon:HG003_chrY_T0001100:3;Name=TSPY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10341306	10341433	.	-	.	source_transcript=ENST00000426936.1;source_transcript_name=TSPY5P-201;source_gene=ENSG00000225685.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225685.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000426936.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426936.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY5P;transcript_id=HG003_chrY_T0001100;gene_id=HG003_chrY_G0000358;Parent=HG003_chrY_T0001100;transcript_name=HG003_chrY_T0001100;gene_name=TSPY5P;ID=intron:HG003_chrY_T0001100:3;Name=TSPY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10341434	10341511	.	-	.	source_transcript=ENST00000426936.1;source_transcript_name=TSPY5P-201;source_gene=ENSG00000225685.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225685.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000426936.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426936.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY5P;transcript_id=HG003_chrY_T0001100;gene_id=HG003_chrY_G0000358;Parent=HG003_chrY_T0001100;transcript_name=HG003_chrY_T0001100;gene_name=TSPY5P;ID=exon:HG003_chrY_T0001100:4;Name=TSPY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	10341512	10342118	.	-	.	source_transcript=ENST00000426936.1;source_transcript_name=TSPY5P-201;source_gene=ENSG00000225685.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225685.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000426936.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426936.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY5P;transcript_id=HG003_chrY_T0001100;gene_id=HG003_chrY_G0000358;Parent=HG003_chrY_T0001100;transcript_name=HG003_chrY_T0001100;gene_name=TSPY5P;ID=intron:HG003_chrY_T0001100:4;Name=TSPY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	10342119	10342625	.	-	.	source_transcript=ENST00000426936.1;source_transcript_name=TSPY5P-201;source_gene=ENSG00000225685.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225685.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000426936.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426936.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY5P;transcript_id=HG003_chrY_T0001100;gene_id=HG003_chrY_G0000358;Parent=HG003_chrY_T0001100;transcript_name=HG003_chrY_T0001100;gene_name=TSPY5P;ID=exon:HG003_chrY_T0001100:5;Name=TSPY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10343605	10343883	.	+	.	source_gene_common_name=ENSG00000278478;source_gene=ENSG00000278478.1;alternative_source_transcripts=ENST00000430032.3,ENST00000430032.3;gene_id=HG003_chrY_G0000359;gene_biotype=processed_pseudogene;gene_name=ENSG00000278478;gene_sources=liftoff;ID=HG003_chrY_G0000359;Name=ENSG00000278478
HG003_chrY	CAT	transcript	10343605	10343883	1000	+	.	source_transcript=ENST00000430032.3;source_transcript_name=ENST00000430032;source_gene=ENSG00000278478.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000278478.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000430032.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000430032.3;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278478;alternative_source_transcripts=ENST00000430032.3,ENST00000430032.3;transcript_id=HG003_chrY_T0001101;gene_id=HG003_chrY_G0000359;Parent=HG003_chrY_G0000359;transcript_name=HG003_chrY_T0001101;gene_name=ENSG00000278478;ID=HG003_chrY_T0001101;Name=ENSG00000278478
HG003_chrY	CAT	exon	10343605	10343883	.	+	.	source_transcript=ENST00000430032.3;source_transcript_name=ENST00000430032;source_gene=ENSG00000278478.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000278478.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000430032.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000430032.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278478;alternative_source_transcripts=ENST00000430032.3,ENST00000430032.3;transcript_id=HG003_chrY_T0001101;gene_id=HG003_chrY_G0000359;Parent=HG003_chrY_T0001101;transcript_name=HG003_chrY_T0001101;gene_name=ENSG00000278478;ID=exon:HG003_chrY_T0001101:0;Name=ENSG00000278478;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10363884	10364002	.	-	.	source_gene_common_name=RNA5SP518;source_gene=ENSG00000251766.1;alternative_source_transcripts=ENST00000515957.1,ENST00000515957.1;gene_id=HG003_chrY_G0000360;gene_biotype=rRNA_pseudogene;gene_name=RNA5SP518;gene_sources=liftoff;ID=HG003_chrY_G0000360;Name=RNA5SP518
HG003_chrY	CAT	transcript	10363884	10364002	1000	-	.	source_transcript=ENST00000515957.1;source_transcript_name=RNA5SP518-201;source_gene=ENSG00000251766.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000251766.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000515957.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000515957.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP518;alternative_source_transcripts=ENST00000515957.1,ENST00000515957.1;transcript_id=HG003_chrY_T0001102;gene_id=HG003_chrY_G0000360;Parent=HG003_chrY_G0000360;transcript_name=HG003_chrY_T0001102;gene_name=RNA5SP518;ID=HG003_chrY_T0001102;Name=RNA5SP518
HG003_chrY	CAT	exon	10363884	10364002	.	-	.	source_transcript=ENST00000515957.1;source_transcript_name=RNA5SP518-201;source_gene=ENSG00000251766.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000251766.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000515957.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000515957.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP518;alternative_source_transcripts=ENST00000515957.1,ENST00000515957.1;transcript_id=HG003_chrY_T0001102;gene_id=HG003_chrY_G0000360;Parent=HG003_chrY_T0001102;transcript_name=HG003_chrY_T0001102;gene_name=RNA5SP518;ID=exon:HG003_chrY_T0001102:0;Name=RNA5SP518;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10366349	10366467	.	-	.	source_gene_common_name=RNA5SP519;source_gene=ENSG00000252289.1;alternative_source_transcripts=ENST00000516480.1,ENST00000516480.1;gene_id=HG003_chrY_G0000361;gene_biotype=rRNA_pseudogene;gene_name=RNA5SP519;gene_sources=liftoff;ID=HG003_chrY_G0000361;Name=RNA5SP519
HG003_chrY	CAT	transcript	10366349	10366467	1000	-	.	source_transcript=ENST00000516480.1;source_transcript_name=RNA5SP519-201;source_gene=ENSG00000252289.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000252289.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000516480.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516480.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP519;alternative_source_transcripts=ENST00000516480.1,ENST00000516480.1;transcript_id=HG003_chrY_T0001103;gene_id=HG003_chrY_G0000361;Parent=HG003_chrY_G0000361;transcript_name=HG003_chrY_T0001103;gene_name=RNA5SP519;ID=HG003_chrY_T0001103;Name=RNA5SP519
HG003_chrY	CAT	exon	10366349	10366467	.	-	.	source_transcript=ENST00000516480.1;source_transcript_name=RNA5SP519-201;source_gene=ENSG00000252289.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000252289.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000516480.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516480.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP519;alternative_source_transcripts=ENST00000516480.1,ENST00000516480.1;transcript_id=HG003_chrY_T0001103;gene_id=HG003_chrY_G0000361;Parent=HG003_chrY_T0001103;transcript_name=HG003_chrY_T0001103;gene_name=RNA5SP519;ID=exon:HG003_chrY_T0001103:0;Name=RNA5SP519;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10445061	10446196	.	-	.	source_gene_common_name=DUX4L31;source_gene=ENSG00000231411.1;alternative_source_transcripts=ENST00000446466.1,ENST00000446466.1;gene_id=HG003_chrY_G0000362;gene_biotype=unprocessed_pseudogene;gene_name=DUX4L31;gene_sources=liftoff;ID=HG003_chrY_G0000362;Name=DUX4L31
HG003_chrY	CAT	transcript	10445061	10446196	1000	-	.	source_transcript=ENST00000446466.1;source_transcript_name=DUX4L31-201;source_gene=ENSG00000231411.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231411.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000446466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000446466.1;transcript_score=199.912;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DUX4L31;alternative_source_transcripts=ENST00000446466.1,ENST00000446466.1;transcript_id=HG003_chrY_T0001104;gene_id=HG003_chrY_G0000362;Parent=HG003_chrY_G0000362;transcript_name=HG003_chrY_T0001104;gene_name=DUX4L31;ID=HG003_chrY_T0001104;Name=DUX4L31
HG003_chrY	CAT	exon	10445061	10446196	.	-	.	source_transcript=ENST00000446466.1;source_transcript_name=DUX4L31-201;source_gene=ENSG00000231411.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231411.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000446466.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000446466.1;transcript_score=199.912;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DUX4L31;alternative_source_transcripts=ENST00000446466.1,ENST00000446466.1;transcript_id=HG003_chrY_T0001104;gene_id=HG003_chrY_G0000362;Parent=HG003_chrY_T0001104;transcript_name=HG003_chrY_T0001104;gene_name=DUX4L31;ID=exon:HG003_chrY_T0001104:0;Name=DUX4L31;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10447324	10447678	.	+	.	source_gene_common_name=PCMTD1P1;source_gene=ENSG00000226061.1;alternative_source_transcripts=ENST00000455560.1,ENST00000455560.1;gene_id=HG003_chrY_G0000363;gene_biotype=unprocessed_pseudogene;gene_name=PCMTD1P1;gene_sources=liftoff;ID=HG003_chrY_G0000363;Name=PCMTD1P1
HG003_chrY	CAT	transcript	10447324	10447678	1000	+	.	source_transcript=ENST00000455560.1;source_transcript_name=PCMTD1P1-201;source_gene=ENSG00000226061.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226061.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455560.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455560.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCMTD1P1;alternative_source_transcripts=ENST00000455560.1,ENST00000455560.1;transcript_id=HG003_chrY_T0001105;gene_id=HG003_chrY_G0000363;Parent=HG003_chrY_G0000363;transcript_name=HG003_chrY_T0001105;gene_name=PCMTD1P1;ID=HG003_chrY_T0001105;Name=PCMTD1P1
HG003_chrY	CAT	exon	10447324	10447678	.	+	.	source_transcript=ENST00000455560.1;source_transcript_name=PCMTD1P1-201;source_gene=ENSG00000226061.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226061.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455560.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455560.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PCMTD1P1;alternative_source_transcripts=ENST00000455560.1,ENST00000455560.1;transcript_id=HG003_chrY_T0001105;gene_id=HG003_chrY_G0000363;Parent=HG003_chrY_T0001105;transcript_name=HG003_chrY_T0001105;gene_name=PCMTD1P1;ID=exon:HG003_chrY_T0001105:0;Name=PCMTD1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10463861	10465782	.	-	.	source_gene_common_name=CDC27P2;source_gene=ENSG00000237447.1;alternative_source_transcripts=ENST00000425026.1,ENST00000425026.1;gene_id=HG003_chrY_G0000364;gene_biotype=processed_pseudogene;gene_name=CDC27P2;gene_sources=liftoff;ID=HG003_chrY_G0000364;Name=CDC27P2
HG003_chrY	CAT	transcript	10463861	10465782	1000	-	.	source_transcript=ENST00000425026.1;source_transcript_name=CDC27P2-201;source_gene=ENSG00000237447.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237447.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000425026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425026.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDC27P2;alternative_source_transcripts=ENST00000425026.1,ENST00000425026.1;transcript_id=HG003_chrY_T0001106;gene_id=HG003_chrY_G0000364;Parent=HG003_chrY_G0000364;transcript_name=HG003_chrY_T0001106;gene_name=CDC27P2;ID=HG003_chrY_T0001106;Name=CDC27P2
HG003_chrY	CAT	exon	10463861	10465782	.	-	.	source_transcript=ENST00000425026.1;source_transcript_name=CDC27P2-201;source_gene=ENSG00000237447.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237447.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000425026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425026.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDC27P2;alternative_source_transcripts=ENST00000425026.1,ENST00000425026.1;transcript_id=HG003_chrY_T0001106;gene_id=HG003_chrY_G0000364;Parent=HG003_chrY_T0001106;transcript_name=HG003_chrY_T0001106;gene_name=CDC27P2;ID=exon:HG003_chrY_T0001106:0;Name=CDC27P2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10470740	10472587	.	-	.	source_gene_common_name=ENSG00000225840;source_gene=ENSG00000225840.2;alternative_source_transcripts=ENST00000445125.2;gene_id=HG003_chrY_G0000365;gene_biotype=processed_pseudogene;gene_name=ENSG00000225840;gene_sources=liftoff;ID=HG003_chrY_G0000365;Name=ENSG00000225840
HG003_chrY	CAT	transcript	10470740	10472587	1000	-	.	source_transcript=ENST00000445125.2;source_transcript_name=ENST00000445125;source_gene=ENSG00000225840.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000225840.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000445125.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445125.2;transcript_score=199.946;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000225840;alternative_source_transcripts=ENST00000445125.2;transcript_id=HG003_chrY_T0001107;gene_id=HG003_chrY_G0000365;Parent=HG003_chrY_G0000365;transcript_name=HG003_chrY_T0001107;gene_name=ENSG00000225840;ID=HG003_chrY_T0001107;Name=ENSG00000225840
HG003_chrY	CAT	exon	10470740	10472587	.	-	.	source_transcript=ENST00000445125.2;source_transcript_name=ENST00000445125;source_gene=ENSG00000225840.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000225840.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000445125.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445125.2;transcript_score=199.946;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000225840;alternative_source_transcripts=ENST00000445125.2;transcript_id=HG003_chrY_T0001107;gene_id=HG003_chrY_G0000365;Parent=HG003_chrY_T0001107;transcript_name=HG003_chrY_T0001107;gene_name=ENSG00000225840;ID=exon:HG003_chrY_T0001107:0;Name=ENSG00000225840;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	10473639	10473790	.	+	.	source_gene_common_name=RNA5-8SP6;source_gene=ENSG00000251705.1;alternative_source_transcripts=ENST00000515896.1;gene_id=HG003_chrY_G0000366;gene_biotype=rRNA_pseudogene;gene_name=RNA5-8SP6;gene_sources=liftoff;ID=HG003_chrY_G0000366;Name=RNA5-8SP6
HG003_chrY	CAT	transcript	10473639	10473790	1000	+	.	source_transcript=ENST00000515896.1;source_transcript_name=RNA5-8SP6-201;source_gene=ENSG00000251705.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000251705.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000515896.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000515896.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5-8SP6;alternative_source_transcripts=ENST00000515896.1;transcript_id=HG003_chrY_T0001108;gene_id=HG003_chrY_G0000366;Parent=HG003_chrY_G0000366;transcript_name=HG003_chrY_T0001108;gene_name=RNA5-8SP6;ID=HG003_chrY_T0001108;Name=RNA5-8SP6
HG003_chrY	CAT	exon	10473639	10473790	.	+	.	source_transcript=ENST00000515896.1;source_transcript_name=RNA5-8SP6-201;source_gene=ENSG00000251705.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000251705.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000515896.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000515896.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5-8SP6;alternative_source_transcripts=ENST00000515896.1;transcript_id=HG003_chrY_T0001108;gene_id=HG003_chrY_G0000366;Parent=HG003_chrY_T0001108;transcript_name=HG003_chrY_T0001108;gene_name=RNA5-8SP6;ID=exon:HG003_chrY_T0001108:0;Name=RNA5-8SP6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11218045	11218266	.	-	.	source_gene_common_name=ENSG00000273858;source_gene=ENSG00000273858.1;alternative_source_transcripts=ENST00000622087.1,ENST00000622087.1;gene_id=HG003_chrY_G0000367;gene_biotype=processed_pseudogene;gene_name=ENSG00000273858;gene_sources=liftoff;ID=HG003_chrY_G0000367;Name=ENSG00000273858
HG003_chrY	CAT	transcript	11218045	11218266	1000	-	.	source_transcript=ENST00000622087.1;source_transcript_name=ENST00000622087;source_gene=ENSG00000273858.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000273858.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000622087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000622087.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273858;alternative_source_transcripts=ENST00000622087.1,ENST00000622087.1;transcript_id=HG003_chrY_T0001109;gene_id=HG003_chrY_G0000367;Parent=HG003_chrY_G0000367;transcript_name=HG003_chrY_T0001109;gene_name=ENSG00000273858;ID=HG003_chrY_T0001109;Name=ENSG00000273858
HG003_chrY	CAT	exon	11218045	11218266	.	-	.	source_transcript=ENST00000622087.1;source_transcript_name=ENST00000622087;source_gene=ENSG00000273858.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000273858.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000622087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000622087.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273858;alternative_source_transcripts=ENST00000622087.1,ENST00000622087.1;transcript_id=HG003_chrY_T0001109;gene_id=HG003_chrY_G0000367;Parent=HG003_chrY_T0001109;transcript_name=HG003_chrY_T0001109;gene_name=ENSG00000273858;ID=exon:HG003_chrY_T0001109:0;Name=ENSG00000273858;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11261204	11261789	.	-	.	source_gene_common_name=CDRT15P10;source_gene=ENSG00000273693.1;alternative_source_transcripts=ENST00000618128.1,ENST00000618128.1;gene_id=HG003_chrY_G0000368;gene_biotype=processed_pseudogene;gene_name=CDRT15P10;gene_sources=liftoff;ID=HG003_chrY_G0000368;Name=CDRT15P10
HG003_chrY	CAT	transcript	11261204	11261789	1000	-	.	source_transcript=ENST00000618128.1;source_transcript_name=CDRT15P10-201;source_gene=ENSG00000273693.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000273693.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000618128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618128.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDRT15P10;alternative_source_transcripts=ENST00000618128.1,ENST00000618128.1;transcript_id=HG003_chrY_T0001110;gene_id=HG003_chrY_G0000368;Parent=HG003_chrY_G0000368;transcript_name=HG003_chrY_T0001110;gene_name=CDRT15P10;ID=HG003_chrY_T0001110;Name=CDRT15P10
HG003_chrY	CAT	exon	11261204	11261789	.	-	.	source_transcript=ENST00000618128.1;source_transcript_name=CDRT15P10-201;source_gene=ENSG00000273693.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000273693.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000618128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618128.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDRT15P10;alternative_source_transcripts=ENST00000618128.1,ENST00000618128.1;transcript_id=HG003_chrY_T0001110;gene_id=HG003_chrY_G0000368;Parent=HG003_chrY_T0001110;transcript_name=HG003_chrY_T0001110;gene_name=CDRT15P10;ID=exon:HG003_chrY_T0001110:0;Name=CDRT15P10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11282791	11282989	.	-	.	source_gene_common_name=ENSG00000271365;source_gene=ENSG00000271365.1;alternative_source_transcripts=ENST00000605663.1,ENST00000605663.1;gene_id=HG003_chrY_G0000369;gene_biotype=processed_pseudogene;gene_name=ENSG00000271365;gene_sources=liftoff;ID=HG003_chrY_G0000369;Name=ENSG00000271365
HG003_chrY	CAT	transcript	11282791	11282989	1000	-	.	source_transcript=ENST00000605663.1;source_transcript_name=ENST00000605663;source_gene=ENSG00000271365.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000271365.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000605663.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000605663.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000271365;alternative_source_transcripts=ENST00000605663.1,ENST00000605663.1;transcript_id=HG003_chrY_T0001111;gene_id=HG003_chrY_G0000369;Parent=HG003_chrY_G0000369;transcript_name=HG003_chrY_T0001111;gene_name=ENSG00000271365;ID=HG003_chrY_T0001111;Name=ENSG00000271365
HG003_chrY	CAT	exon	11282791	11282989	.	-	.	source_transcript=ENST00000605663.1;source_transcript_name=ENST00000605663;source_gene=ENSG00000271365.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000271365.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000605663.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000605663.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000271365;alternative_source_transcripts=ENST00000605663.1,ENST00000605663.1;transcript_id=HG003_chrY_T0001111;gene_id=HG003_chrY_G0000369;Parent=HG003_chrY_T0001111;transcript_name=HG003_chrY_T0001111;gene_name=ENSG00000271365;ID=exon:HG003_chrY_T0001111:0;Name=ENSG00000271365;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11283115	11283322	.	-	.	source_gene_common_name=ENSG00000271309;source_gene=ENSG00000271309.1;alternative_source_transcripts=ENST00000604370.1,ENST00000604370.1;gene_id=HG003_chrY_G0000370;gene_biotype=processed_pseudogene;gene_name=ENSG00000271309;gene_sources=liftoff;ID=HG003_chrY_G0000370;Name=ENSG00000271309
HG003_chrY	CAT	transcript	11283115	11283322	1000	-	.	source_transcript=ENST00000604370.1;source_transcript_name=ENST00000604370;source_gene=ENSG00000271309.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000271309.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000604370.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000604370.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000271309;alternative_source_transcripts=ENST00000604370.1,ENST00000604370.1;transcript_id=HG003_chrY_T0001112;gene_id=HG003_chrY_G0000370;Parent=HG003_chrY_G0000370;transcript_name=HG003_chrY_T0001112;gene_name=ENSG00000271309;ID=HG003_chrY_T0001112;Name=ENSG00000271309
HG003_chrY	CAT	exon	11283115	11283322	.	-	.	source_transcript=ENST00000604370.1;source_transcript_name=ENST00000604370;source_gene=ENSG00000271309.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000271309.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000604370.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000604370.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000271309;alternative_source_transcripts=ENST00000604370.1,ENST00000604370.1;transcript_id=HG003_chrY_T0001112;gene_id=HG003_chrY_G0000370;Parent=HG003_chrY_T0001112;transcript_name=HG003_chrY_T0001112;gene_name=ENSG00000271309;ID=exon:HG003_chrY_T0001112:0;Name=ENSG00000271309;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11283445	11283613	.	-	.	source_gene_common_name=ENSG00000270570;source_gene=ENSG00000270570.1;alternative_source_transcripts=ENST00000603467.1,ENST00000603467.1;gene_id=HG003_chrY_G0000371;gene_biotype=processed_pseudogene;gene_name=ENSG00000270570;gene_sources=liftoff;ID=HG003_chrY_G0000371;Name=ENSG00000270570
HG003_chrY	CAT	transcript	11283445	11283613	1000	-	.	source_transcript=ENST00000603467.1;source_transcript_name=ENST00000603467;source_gene=ENSG00000270570.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000270570.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000603467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000603467.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000270570;alternative_source_transcripts=ENST00000603467.1,ENST00000603467.1;transcript_id=HG003_chrY_T0001113;gene_id=HG003_chrY_G0000371;Parent=HG003_chrY_G0000371;transcript_name=HG003_chrY_T0001113;gene_name=ENSG00000270570;ID=HG003_chrY_T0001113;Name=ENSG00000270570
HG003_chrY	CAT	exon	11283445	11283613	.	-	.	source_transcript=ENST00000603467.1;source_transcript_name=ENST00000603467;source_gene=ENSG00000270570.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000270570.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000603467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000603467.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000270570;alternative_source_transcripts=ENST00000603467.1,ENST00000603467.1;transcript_id=HG003_chrY_T0001113;gene_id=HG003_chrY_G0000371;Parent=HG003_chrY_T0001113;transcript_name=HG003_chrY_T0001113;gene_name=ENSG00000270570;ID=exon:HG003_chrY_T0001113:0;Name=ENSG00000270570;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11292011	11390727	.	-	.	source_gene_common_name=ENSG00000291032;source_gene=ENSG00000291032.2;gene_id=HG003_chrY_G0000372;gene_biotype=lncRNA;gene_name=ENSG00000291032;gene_sources=liftoff;ID=HG003_chrY_G0000372;Name=ENSG00000291032
HG003_chrY	CAT	transcript	11292011	11390726	1000	-	.	source_transcript=ENST00000796783.1;source_transcript_name=ENST00000796783;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796783.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001114;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001114;gene_name=ENSG00000291032;ID=HG003_chrY_T0001114;Name=ENSG00000291032
HG003_chrY	CAT	exon	11292011	11292160	.	-	.	source_transcript=ENST00000796783.1;source_transcript_name=ENST00000796783;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001114;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001114;transcript_name=HG003_chrY_T0001114;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001114:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11292161	11319035	.	-	.	source_transcript=ENST00000796783.1;source_transcript_name=ENST00000796783;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001114;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001114;transcript_name=HG003_chrY_T0001114;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001114:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11319036	11319070	.	-	.	source_transcript=ENST00000796783.1;source_transcript_name=ENST00000796783;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001114;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001114;transcript_name=HG003_chrY_T0001114;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001114:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11319071	11388446	.	-	.	source_transcript=ENST00000796783.1;source_transcript_name=ENST00000796783;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001114;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001114;transcript_name=HG003_chrY_T0001114;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001114:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796783.1;source_transcript_name=ENST00000796783;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001114;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001114;transcript_name=HG003_chrY_T0001114;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001114:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796783.1;source_transcript_name=ENST00000796783;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001114;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001114;transcript_name=HG003_chrY_T0001114;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001114:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390726	.	-	.	source_transcript=ENST00000796783.1;source_transcript_name=ENST00000796783;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796783.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796783.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001114;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001114;transcript_name=HG003_chrY_T0001114;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001114:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11299920	11390730	1000	-	.	source_transcript=ENST00000796784.1;source_transcript_name=ENST00000796784;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796784.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001115;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001115;gene_name=ENSG00000291032;ID=HG003_chrY_T0001115;Name=ENSG00000291032
HG003_chrY	CAT	exon	11299920	11300043	.	-	.	source_transcript=ENST00000796784.1;source_transcript_name=ENST00000796784;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001115;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001115;transcript_name=HG003_chrY_T0001115;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001115:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11300044	11388446	.	-	.	source_transcript=ENST00000796784.1;source_transcript_name=ENST00000796784;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001115;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001115;transcript_name=HG003_chrY_T0001115;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001115:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796784.1;source_transcript_name=ENST00000796784;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001115;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001115;transcript_name=HG003_chrY_T0001115;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001115:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796784.1;source_transcript_name=ENST00000796784;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001115;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001115;transcript_name=HG003_chrY_T0001115;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001115:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390730	.	-	.	source_transcript=ENST00000796784.1;source_transcript_name=ENST00000796784;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796784.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001115;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001115;transcript_name=HG003_chrY_T0001115;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001115:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11302842	11390726	1000	-	.	source_transcript=ENST00000796785.1;source_transcript_name=ENST00000796785;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796785.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001116;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001116;gene_name=ENSG00000291032;ID=HG003_chrY_T0001116;Name=ENSG00000291032
HG003_chrY	CAT	exon	11302842	11303100	.	-	.	source_transcript=ENST00000796785.1;source_transcript_name=ENST00000796785;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001116;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001116;transcript_name=HG003_chrY_T0001116;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001116:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11303101	11388446	.	-	.	source_transcript=ENST00000796785.1;source_transcript_name=ENST00000796785;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001116;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001116;transcript_name=HG003_chrY_T0001116;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001116:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796785.1;source_transcript_name=ENST00000796785;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001116;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001116;transcript_name=HG003_chrY_T0001116;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001116:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796785.1;source_transcript_name=ENST00000796785;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001116;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001116;transcript_name=HG003_chrY_T0001116;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001116:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390726	.	-	.	source_transcript=ENST00000796785.1;source_transcript_name=ENST00000796785;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796785.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001116;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001116;transcript_name=HG003_chrY_T0001116;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001116:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11302847	11388505	1000	-	.	source_transcript=ENST00000796786.1;source_transcript_name=ENST00000796786;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796786.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001117;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001117;gene_name=ENSG00000291032;ID=HG003_chrY_T0001117;Name=ENSG00000291032
HG003_chrY	CAT	exon	11302847	11303100	.	-	.	source_transcript=ENST00000796786.1;source_transcript_name=ENST00000796786;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001117;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001117;transcript_name=HG003_chrY_T0001117;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001117:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11303101	11319035	.	-	.	source_transcript=ENST00000796786.1;source_transcript_name=ENST00000796786;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001117;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001117;transcript_name=HG003_chrY_T0001117;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001117:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11319036	11319070	.	-	.	source_transcript=ENST00000796786.1;source_transcript_name=ENST00000796786;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001117;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001117;transcript_name=HG003_chrY_T0001117;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001117:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11319071	11388446	.	-	.	source_transcript=ENST00000796786.1;source_transcript_name=ENST00000796786;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001117;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001117;transcript_name=HG003_chrY_T0001117;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001117:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796786.1;source_transcript_name=ENST00000796786;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796786.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796786.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001117;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001117;transcript_name=HG003_chrY_T0001117;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001117:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11329494	11390726	1000	-	.	source_transcript=ENST00000796787.1;source_transcript_name=ENST00000796787;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796787.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001119;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001119;gene_name=ENSG00000291032;ID=HG003_chrY_T0001119;Name=ENSG00000291032
HG003_chrY	CAT	exon	11329494	11329772	.	-	.	source_transcript=ENST00000796787.1;source_transcript_name=ENST00000796787;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001119;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001119;transcript_name=HG003_chrY_T0001119;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001119:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11329773	11330296	.	-	.	source_transcript=ENST00000796787.1;source_transcript_name=ENST00000796787;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001119;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001119;transcript_name=HG003_chrY_T0001119;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001119:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11330297	11330317	.	-	.	source_transcript=ENST00000796787.1;source_transcript_name=ENST00000796787;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001119;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001119;transcript_name=HG003_chrY_T0001119;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001119:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11330318	11331355	.	-	.	source_transcript=ENST00000796787.1;source_transcript_name=ENST00000796787;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001119;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001119;transcript_name=HG003_chrY_T0001119;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001119:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11331356	11331586	.	-	.	source_transcript=ENST00000796787.1;source_transcript_name=ENST00000796787;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001119;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001119;transcript_name=HG003_chrY_T0001119;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001119:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11331587	11388446	.	-	.	source_transcript=ENST00000796787.1;source_transcript_name=ENST00000796787;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001119;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001119;transcript_name=HG003_chrY_T0001119;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001119:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796787.1;source_transcript_name=ENST00000796787;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001119;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001119;transcript_name=HG003_chrY_T0001119;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001119:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796787.1;source_transcript_name=ENST00000796787;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001119;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001119;transcript_name=HG003_chrY_T0001119;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001119:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390726	.	-	.	source_transcript=ENST00000796787.1;source_transcript_name=ENST00000796787;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796787.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796787.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001119;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001119;transcript_name=HG003_chrY_T0001119;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001119:4;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11329494	11390729	1000	-	.	source_transcript=ENST00000652671.3;source_transcript_name=ENST00000652671;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652671.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000652671.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001120;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001120;gene_name=ENSG00000291032;ID=HG003_chrY_T0001120;Name=ENSG00000291032
HG003_chrY	CAT	exon	11329494	11329802	.	-	.	source_transcript=ENST00000652671.3;source_transcript_name=ENST00000652671;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652671.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000652671.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001120;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001120;transcript_name=HG003_chrY_T0001120;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001120:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11329803	11331355	.	-	.	source_transcript=ENST00000652671.3;source_transcript_name=ENST00000652671;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652671.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000652671.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001120;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001120;transcript_name=HG003_chrY_T0001120;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001120:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11331356	11331586	.	-	.	source_transcript=ENST00000652671.3;source_transcript_name=ENST00000652671;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652671.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000652671.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001120;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001120;transcript_name=HG003_chrY_T0001120;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001120:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11331587	11388446	.	-	.	source_transcript=ENST00000652671.3;source_transcript_name=ENST00000652671;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652671.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000652671.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001120;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001120;transcript_name=HG003_chrY_T0001120;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001120:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000652671.3;source_transcript_name=ENST00000652671;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652671.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000652671.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001120;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001120;transcript_name=HG003_chrY_T0001120;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001120:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000652671.3;source_transcript_name=ENST00000652671;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652671.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000652671.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001120;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001120;transcript_name=HG003_chrY_T0001120;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001120:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390729	.	-	.	source_transcript=ENST00000652671.3;source_transcript_name=ENST00000652671;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652671.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000652671.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001120;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001120;transcript_name=HG003_chrY_T0001120;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001120:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11329499	11390721	1000	-	.	source_transcript=ENST00000796788.1;source_transcript_name=ENST00000796788;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796788.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001121;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001121;gene_name=ENSG00000291032;ID=HG003_chrY_T0001121;Name=ENSG00000291032
HG003_chrY	CAT	exon	11329499	11329772	.	-	.	source_transcript=ENST00000796788.1;source_transcript_name=ENST00000796788;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001121;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001121;transcript_name=HG003_chrY_T0001121;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001121:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11329773	11331355	.	-	.	source_transcript=ENST00000796788.1;source_transcript_name=ENST00000796788;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001121;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001121;transcript_name=HG003_chrY_T0001121;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001121:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11331356	11331586	.	-	.	source_transcript=ENST00000796788.1;source_transcript_name=ENST00000796788;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001121;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001121;transcript_name=HG003_chrY_T0001121;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001121:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11331587	11388446	.	-	.	source_transcript=ENST00000796788.1;source_transcript_name=ENST00000796788;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001121;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001121;transcript_name=HG003_chrY_T0001121;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001121:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796788.1;source_transcript_name=ENST00000796788;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001121;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001121;transcript_name=HG003_chrY_T0001121;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001121:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796788.1;source_transcript_name=ENST00000796788;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001121;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001121;transcript_name=HG003_chrY_T0001121;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001121:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390721	.	-	.	source_transcript=ENST00000796788.1;source_transcript_name=ENST00000796788;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796788.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796788.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001121;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001121;transcript_name=HG003_chrY_T0001121;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001121:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11329499	11390702	1000	-	.	source_transcript=ENST00000796790.1;source_transcript_name=ENST00000796790;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796790.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001122;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001122;gene_name=ENSG00000291032;ID=HG003_chrY_T0001122;Name=ENSG00000291032
HG003_chrY	CAT	exon	11329499	11329802	.	-	.	source_transcript=ENST00000796790.1;source_transcript_name=ENST00000796790;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001122;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001122;transcript_name=HG003_chrY_T0001122;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001122:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11329803	11330296	.	-	.	source_transcript=ENST00000796790.1;source_transcript_name=ENST00000796790;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001122;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001122;transcript_name=HG003_chrY_T0001122;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001122:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11330297	11330484	.	-	.	source_transcript=ENST00000796790.1;source_transcript_name=ENST00000796790;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001122;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001122;transcript_name=HG003_chrY_T0001122;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001122:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11330485	11330587	.	-	.	source_transcript=ENST00000796790.1;source_transcript_name=ENST00000796790;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001122;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001122;transcript_name=HG003_chrY_T0001122;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001122:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11330588	11330865	.	-	.	source_transcript=ENST00000796790.1;source_transcript_name=ENST00000796790;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001122;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001122;transcript_name=HG003_chrY_T0001122;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001122:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11330866	11331355	.	-	.	source_transcript=ENST00000796790.1;source_transcript_name=ENST00000796790;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001122;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001122;transcript_name=HG003_chrY_T0001122;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001122:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11331356	11331586	.	-	.	source_transcript=ENST00000796790.1;source_transcript_name=ENST00000796790;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001122;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001122;transcript_name=HG003_chrY_T0001122;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001122:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11331587	11388446	.	-	.	source_transcript=ENST00000796790.1;source_transcript_name=ENST00000796790;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001122;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001122;transcript_name=HG003_chrY_T0001122;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001122:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796790.1;source_transcript_name=ENST00000796790;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001122;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001122;transcript_name=HG003_chrY_T0001122;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001122:4;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796790.1;source_transcript_name=ENST00000796790;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001122;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001122;transcript_name=HG003_chrY_T0001122;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001122:4;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390702	.	-	.	source_transcript=ENST00000796790.1;source_transcript_name=ENST00000796790;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796790.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796790.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001122;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001122;transcript_name=HG003_chrY_T0001122;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001122:5;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11329499	11390679	1000	-	.	source_transcript=ENST00000796791.1;source_transcript_name=ENST00000796791;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796791.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001123;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001123;gene_name=ENSG00000291032;ID=HG003_chrY_T0001123;Name=ENSG00000291032
HG003_chrY	CAT	exon	11329499	11329802	.	-	.	source_transcript=ENST00000796791.1;source_transcript_name=ENST00000796791;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001123;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001123;transcript_name=HG003_chrY_T0001123;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001123:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11329803	11388446	.	-	.	source_transcript=ENST00000796791.1;source_transcript_name=ENST00000796791;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001123;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001123;transcript_name=HG003_chrY_T0001123;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001123:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796791.1;source_transcript_name=ENST00000796791;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001123;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001123;transcript_name=HG003_chrY_T0001123;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001123:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796791.1;source_transcript_name=ENST00000796791;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001123;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001123;transcript_name=HG003_chrY_T0001123;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001123:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390679	.	-	.	source_transcript=ENST00000796791.1;source_transcript_name=ENST00000796791;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796791.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796791.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001123;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001123;transcript_name=HG003_chrY_T0001123;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001123:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11329502	11390679	1000	-	.	source_transcript=ENST00000796792.1;source_transcript_name=ENST00000796792;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796792.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001124;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001124;gene_name=ENSG00000291032;ID=HG003_chrY_T0001124;Name=ENSG00000291032
HG003_chrY	CAT	exon	11329502	11330484	.	-	.	source_transcript=ENST00000796792.1;source_transcript_name=ENST00000796792;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001124;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001124;transcript_name=HG003_chrY_T0001124;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001124:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11330485	11331355	.	-	.	source_transcript=ENST00000796792.1;source_transcript_name=ENST00000796792;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001124;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001124;transcript_name=HG003_chrY_T0001124;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001124:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11331356	11331586	.	-	.	source_transcript=ENST00000796792.1;source_transcript_name=ENST00000796792;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001124;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001124;transcript_name=HG003_chrY_T0001124;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001124:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11331587	11388446	.	-	.	source_transcript=ENST00000796792.1;source_transcript_name=ENST00000796792;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001124;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001124;transcript_name=HG003_chrY_T0001124;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001124:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796792.1;source_transcript_name=ENST00000796792;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001124;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001124;transcript_name=HG003_chrY_T0001124;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001124:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796792.1;source_transcript_name=ENST00000796792;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001124;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001124;transcript_name=HG003_chrY_T0001124;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001124:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390679	.	-	.	source_transcript=ENST00000796792.1;source_transcript_name=ENST00000796792;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796792.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796792.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001124;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001124;transcript_name=HG003_chrY_T0001124;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001124:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11329503	11390721	1000	-	.	source_transcript=ENST00000796789.1;source_transcript_name=ENST00000796789;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796789.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001125;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001125;gene_name=ENSG00000291032;ID=HG003_chrY_T0001125;Name=ENSG00000291032
HG003_chrY	CAT	exon	11329503	11329802	.	-	.	source_transcript=ENST00000796789.1;source_transcript_name=ENST00000796789;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001125;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001125;transcript_name=HG003_chrY_T0001125;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001125:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11329803	11330587	.	-	.	source_transcript=ENST00000796789.1;source_transcript_name=ENST00000796789;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001125;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001125;transcript_name=HG003_chrY_T0001125;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001125:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11330588	11330742	.	-	.	source_transcript=ENST00000796789.1;source_transcript_name=ENST00000796789;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001125;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001125;transcript_name=HG003_chrY_T0001125;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001125:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11330743	11331355	.	-	.	source_transcript=ENST00000796789.1;source_transcript_name=ENST00000796789;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001125;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001125;transcript_name=HG003_chrY_T0001125;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001125:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11331356	11331586	.	-	.	source_transcript=ENST00000796789.1;source_transcript_name=ENST00000796789;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001125;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001125;transcript_name=HG003_chrY_T0001125;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001125:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11331587	11388446	.	-	.	source_transcript=ENST00000796789.1;source_transcript_name=ENST00000796789;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001125;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001125;transcript_name=HG003_chrY_T0001125;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001125:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796789.1;source_transcript_name=ENST00000796789;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001125;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001125;transcript_name=HG003_chrY_T0001125;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001125:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796789.1;source_transcript_name=ENST00000796789;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001125;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001125;transcript_name=HG003_chrY_T0001125;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001125:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390721	.	-	.	source_transcript=ENST00000796789.1;source_transcript_name=ENST00000796789;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796789.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001125;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001125;transcript_name=HG003_chrY_T0001125;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001125:4;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11331191	11390708	1000	-	.	source_transcript=ENST00000796793.1;source_transcript_name=ENST00000796793;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796793.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001127;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001127;gene_name=ENSG00000291032;ID=HG003_chrY_T0001127;Name=ENSG00000291032
HG003_chrY	CAT	exon	11331191	11331586	.	-	.	source_transcript=ENST00000796793.1;source_transcript_name=ENST00000796793;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001127;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001127;transcript_name=HG003_chrY_T0001127;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001127:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11331587	11388446	.	-	.	source_transcript=ENST00000796793.1;source_transcript_name=ENST00000796793;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001127;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001127;transcript_name=HG003_chrY_T0001127;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001127:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796793.1;source_transcript_name=ENST00000796793;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001127;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001127;transcript_name=HG003_chrY_T0001127;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001127:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796793.1;source_transcript_name=ENST00000796793;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001127;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001127;transcript_name=HG003_chrY_T0001127;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001127:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390708	.	-	.	source_transcript=ENST00000796793.1;source_transcript_name=ENST00000796793;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796793.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796793.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001127;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001127;transcript_name=HG003_chrY_T0001127;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001127:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11337344	11390824	1000	-	.	source_transcript=ENST00000651211.3;source_transcript_name=ENST00000651211;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651211.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000651211.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001128;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001128;gene_name=ENSG00000291032;ID=HG003_chrY_T0001128;Name=ENSG00000291032
HG003_chrY	CAT	exon	11337344	11338839	.	-	.	source_transcript=ENST00000651211.3;source_transcript_name=ENST00000651211;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651211.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000651211.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001128;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001128;transcript_name=HG003_chrY_T0001128;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001128:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11388446	.	-	.	source_transcript=ENST00000651211.3;source_transcript_name=ENST00000651211;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651211.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000651211.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001128;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001128;transcript_name=HG003_chrY_T0001128;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001128:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000651211.3;source_transcript_name=ENST00000651211;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651211.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000651211.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001128;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001128;transcript_name=HG003_chrY_T0001128;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001128:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000651211.3;source_transcript_name=ENST00000651211;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651211.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000651211.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001128;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001128;transcript_name=HG003_chrY_T0001128;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001128:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390824	.	-	.	source_transcript=ENST00000651211.3;source_transcript_name=ENST00000651211;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651211.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000651211.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001128;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001128;transcript_name=HG003_chrY_T0001128;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001128:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11337351	11390910	1000	-	.	source_transcript=ENST00000796794.1;source_transcript_name=ENST00000796794;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796794.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001129;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001129;gene_name=ENSG00000291032;ID=HG003_chrY_T0001129;Name=ENSG00000291032
HG003_chrY	CAT	exon	11337351	11338828	.	-	.	source_transcript=ENST00000796794.1;source_transcript_name=ENST00000796794;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796794.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001129;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001129;transcript_name=HG003_chrY_T0001129;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001129:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338829	11388446	.	-	.	source_transcript=ENST00000796794.1;source_transcript_name=ENST00000796794;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796794.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001129;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001129;transcript_name=HG003_chrY_T0001129;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001129:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796794.1;source_transcript_name=ENST00000796794;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796794.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001129;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001129;transcript_name=HG003_chrY_T0001129;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001129:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796794.1;source_transcript_name=ENST00000796794;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796794.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001129;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001129;transcript_name=HG003_chrY_T0001129;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001129:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390910	.	-	.	source_transcript=ENST00000796794.1;source_transcript_name=ENST00000796794;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796794.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001129;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001129;transcript_name=HG003_chrY_T0001129;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001129:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11337449	11390742	1000	-	.	source_transcript=ENST00000796795.1;source_transcript_name=ENST00000796795;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796795.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001130;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001130;gene_name=ENSG00000291032;ID=HG003_chrY_T0001130;Name=ENSG00000291032
HG003_chrY	CAT	exon	11337449	11338241	.	-	.	source_transcript=ENST00000796795.1;source_transcript_name=ENST00000796795;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796795.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001130;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001130;transcript_name=HG003_chrY_T0001130;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001130:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338242	11338610	.	-	.	source_transcript=ENST00000796795.1;source_transcript_name=ENST00000796795;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796795.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001130;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001130;transcript_name=HG003_chrY_T0001130;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001130:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11338611	11338839	.	-	.	source_transcript=ENST00000796795.1;source_transcript_name=ENST00000796795;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796795.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001130;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001130;transcript_name=HG003_chrY_T0001130;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001130:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11388446	.	-	.	source_transcript=ENST00000796795.1;source_transcript_name=ENST00000796795;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796795.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001130;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001130;transcript_name=HG003_chrY_T0001130;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001130:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796795.1;source_transcript_name=ENST00000796795;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796795.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001130;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001130;transcript_name=HG003_chrY_T0001130;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001130:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796795.1;source_transcript_name=ENST00000796795;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796795.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001130;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001130;transcript_name=HG003_chrY_T0001130;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001130:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390742	.	-	.	source_transcript=ENST00000796795.1;source_transcript_name=ENST00000796795;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796795.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796795.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001130;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001130;transcript_name=HG003_chrY_T0001130;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001130:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11337547	11390727	1000	-	.	source_transcript=ENST00000796796.1;source_transcript_name=ENST00000796796;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796796.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796796.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001131;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001131;gene_name=ENSG00000291032;ID=HG003_chrY_T0001131;Name=ENSG00000291032
HG003_chrY	CAT	exon	11337547	11338839	.	-	.	source_transcript=ENST00000796796.1;source_transcript_name=ENST00000796796;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796796.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796796.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001131;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001131;transcript_name=HG003_chrY_T0001131;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001131:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11388446	.	-	.	source_transcript=ENST00000796796.1;source_transcript_name=ENST00000796796;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796796.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796796.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001131;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001131;transcript_name=HG003_chrY_T0001131;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001131:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796796.1;source_transcript_name=ENST00000796796;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796796.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796796.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001131;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001131;transcript_name=HG003_chrY_T0001131;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001131:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390644	.	-	.	source_transcript=ENST00000796796.1;source_transcript_name=ENST00000796796;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796796.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796796.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001131;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001131;transcript_name=HG003_chrY_T0001131;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001131:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390645	11390727	.	-	.	source_transcript=ENST00000796796.1;source_transcript_name=ENST00000796796;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796796.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796796.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001131;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001131;transcript_name=HG003_chrY_T0001131;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001131:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11337547	11390690	1000	-	.	source_transcript=ENST00000796799.1;source_transcript_name=ENST00000796799;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796799.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001132;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001132;gene_name=ENSG00000291032;ID=HG003_chrY_T0001132;Name=ENSG00000291032
HG003_chrY	CAT	exon	11337547	11338828	.	-	.	source_transcript=ENST00000796799.1;source_transcript_name=ENST00000796799;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001132;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001132;transcript_name=HG003_chrY_T0001132;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001132:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338829	11388446	.	-	.	source_transcript=ENST00000796799.1;source_transcript_name=ENST00000796799;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001132;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001132;transcript_name=HG003_chrY_T0001132;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001132:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796799.1;source_transcript_name=ENST00000796799;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001132;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001132;transcript_name=HG003_chrY_T0001132;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001132:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390048	.	-	.	source_transcript=ENST00000796799.1;source_transcript_name=ENST00000796799;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001132;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001132;transcript_name=HG003_chrY_T0001132;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001132:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390049	11390158	.	-	.	source_transcript=ENST00000796799.1;source_transcript_name=ENST00000796799;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001132;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001132;transcript_name=HG003_chrY_T0001132;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001132:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11390159	11390640	.	-	.	source_transcript=ENST00000796799.1;source_transcript_name=ENST00000796799;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001132;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001132;transcript_name=HG003_chrY_T0001132;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001132:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390690	.	-	.	source_transcript=ENST00000796799.1;source_transcript_name=ENST00000796799;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796799.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796799.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001132;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001132;transcript_name=HG003_chrY_T0001132;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001132:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11337547	11390721	1000	-	.	source_transcript=ENST00000796797.1;source_transcript_name=ENST00000796797;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796797.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001133;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001133;gene_name=ENSG00000291032;ID=HG003_chrY_T0001133;Name=ENSG00000291032
HG003_chrY	CAT	exon	11337547	11338839	.	-	.	source_transcript=ENST00000796797.1;source_transcript_name=ENST00000796797;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796797.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001133;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001133;transcript_name=HG003_chrY_T0001133;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001133:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11388446	.	-	.	source_transcript=ENST00000796797.1;source_transcript_name=ENST00000796797;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796797.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001133;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001133;transcript_name=HG003_chrY_T0001133;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001133:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796797.1;source_transcript_name=ENST00000796797;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796797.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001133;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001133;transcript_name=HG003_chrY_T0001133;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001133:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390048	.	-	.	source_transcript=ENST00000796797.1;source_transcript_name=ENST00000796797;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796797.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001133;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001133;transcript_name=HG003_chrY_T0001133;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001133:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390049	11390158	.	-	.	source_transcript=ENST00000796797.1;source_transcript_name=ENST00000796797;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796797.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001133;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001133;transcript_name=HG003_chrY_T0001133;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001133:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11390159	11390640	.	-	.	source_transcript=ENST00000796797.1;source_transcript_name=ENST00000796797;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796797.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001133;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001133;transcript_name=HG003_chrY_T0001133;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001133:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390721	.	-	.	source_transcript=ENST00000796797.1;source_transcript_name=ENST00000796797;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796797.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001133;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001133;transcript_name=HG003_chrY_T0001133;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001133:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11337547	11390654	1000	-	.	source_transcript=ENST00000687423.1;source_transcript_name=ENST00000687423;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000687423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000687423.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001134;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001134;gene_name=ENSG00000291032;ID=HG003_chrY_T0001134;Name=ENSG00000291032
HG003_chrY	CAT	exon	11337547	11338839	.	-	.	source_transcript=ENST00000687423.1;source_transcript_name=ENST00000687423;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000687423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000687423.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001134;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001134;transcript_name=HG003_chrY_T0001134;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001134:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11388446	.	-	.	source_transcript=ENST00000687423.1;source_transcript_name=ENST00000687423;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000687423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000687423.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001134;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001134;transcript_name=HG003_chrY_T0001134;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001134:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000687423.1;source_transcript_name=ENST00000687423;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000687423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000687423.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001134;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001134;transcript_name=HG003_chrY_T0001134;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001134:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390433	.	-	.	source_transcript=ENST00000687423.1;source_transcript_name=ENST00000687423;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000687423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000687423.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001134;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001134;transcript_name=HG003_chrY_T0001134;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001134:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390434	11390654	.	-	.	source_transcript=ENST00000687423.1;source_transcript_name=ENST00000687423;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000687423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000687423.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001134;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001134;transcript_name=HG003_chrY_T0001134;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001134:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11337547	11390721	1000	-	.	source_transcript=ENST00000796798.1;source_transcript_name=ENST00000796798;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796798.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001135;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001135;gene_name=ENSG00000291032;ID=HG003_chrY_T0001135;Name=ENSG00000291032
HG003_chrY	CAT	exon	11337547	11338839	.	-	.	source_transcript=ENST00000796798.1;source_transcript_name=ENST00000796798;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796798.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001135;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001135;transcript_name=HG003_chrY_T0001135;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001135:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11388446	.	-	.	source_transcript=ENST00000796798.1;source_transcript_name=ENST00000796798;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796798.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001135;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001135;transcript_name=HG003_chrY_T0001135;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001135:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796798.1;source_transcript_name=ENST00000796798;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796798.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001135;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001135;transcript_name=HG003_chrY_T0001135;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001135:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11389779	.	-	.	source_transcript=ENST00000796798.1;source_transcript_name=ENST00000796798;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796798.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001135;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001135;transcript_name=HG003_chrY_T0001135;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001135:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11389780	11389867	.	-	.	source_transcript=ENST00000796798.1;source_transcript_name=ENST00000796798;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796798.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001135;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001135;transcript_name=HG003_chrY_T0001135;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001135:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11389868	11390640	.	-	.	source_transcript=ENST00000796798.1;source_transcript_name=ENST00000796798;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796798.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001135;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001135;transcript_name=HG003_chrY_T0001135;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001135:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390721	.	-	.	source_transcript=ENST00000796798.1;source_transcript_name=ENST00000796798;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796798.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796798.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001135;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001135;transcript_name=HG003_chrY_T0001135;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001135:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11337547	11390508	1000	-	.	source_transcript=ENST00000796800.1;source_transcript_name=ENST00000796800;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796800.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001136;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001136;gene_name=ENSG00000291032;ID=HG003_chrY_T0001136;Name=ENSG00000291032
HG003_chrY	CAT	exon	11337547	11338839	.	-	.	source_transcript=ENST00000796800.1;source_transcript_name=ENST00000796800;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796800.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001136;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001136;transcript_name=HG003_chrY_T0001136;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001136:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11388446	.	-	.	source_transcript=ENST00000796800.1;source_transcript_name=ENST00000796800;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796800.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001136;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001136;transcript_name=HG003_chrY_T0001136;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001136:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796800.1;source_transcript_name=ENST00000796800;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796800.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001136;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001136;transcript_name=HG003_chrY_T0001136;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001136:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11389917	.	-	.	source_transcript=ENST00000796800.1;source_transcript_name=ENST00000796800;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796800.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001136;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001136;transcript_name=HG003_chrY_T0001136;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001136:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11389918	11390508	.	-	.	source_transcript=ENST00000796800.1;source_transcript_name=ENST00000796800;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796800.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796800.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001136;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001136;transcript_name=HG003_chrY_T0001136;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001136:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11338085	11390727	1000	-	.	source_transcript=ENST00000796801.1;source_transcript_name=ENST00000796801;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796801.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001137;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001137;gene_name=ENSG00000291032;ID=HG003_chrY_T0001137;Name=ENSG00000291032
HG003_chrY	CAT	exon	11338085	11338241	.	-	.	source_transcript=ENST00000796801.1;source_transcript_name=ENST00000796801;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796801.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001137;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001137;transcript_name=HG003_chrY_T0001137;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001137:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338242	11338610	.	-	.	source_transcript=ENST00000796801.1;source_transcript_name=ENST00000796801;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796801.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001137;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001137;transcript_name=HG003_chrY_T0001137;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001137:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11338611	11338664	.	-	.	source_transcript=ENST00000796801.1;source_transcript_name=ENST00000796801;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796801.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001137;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001137;transcript_name=HG003_chrY_T0001137;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001137:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338665	11338777	.	-	.	source_transcript=ENST00000796801.1;source_transcript_name=ENST00000796801;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796801.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001137;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001137;transcript_name=HG003_chrY_T0001137;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001137:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11338778	11338839	.	-	.	source_transcript=ENST00000796801.1;source_transcript_name=ENST00000796801;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796801.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001137;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001137;transcript_name=HG003_chrY_T0001137;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001137:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11388446	.	-	.	source_transcript=ENST00000796801.1;source_transcript_name=ENST00000796801;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796801.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001137;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001137;transcript_name=HG003_chrY_T0001137;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001137:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796801.1;source_transcript_name=ENST00000796801;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796801.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001137;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001137;transcript_name=HG003_chrY_T0001137;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001137:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796801.1;source_transcript_name=ENST00000796801;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796801.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001137;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001137;transcript_name=HG003_chrY_T0001137;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001137:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390727	.	-	.	source_transcript=ENST00000796801.1;source_transcript_name=ENST00000796801;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796801.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796801.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001137;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001137;transcript_name=HG003_chrY_T0001137;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001137:4;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11338085	11390683	1000	-	.	source_transcript=ENST00000796802.1;source_transcript_name=ENST00000796802;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796802.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001138;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001138;gene_name=ENSG00000291032;ID=HG003_chrY_T0001138;Name=ENSG00000291032
HG003_chrY	CAT	exon	11338085	11338241	.	-	.	source_transcript=ENST00000796802.1;source_transcript_name=ENST00000796802;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001138;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001138;transcript_name=HG003_chrY_T0001138;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001138:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338242	11338610	.	-	.	source_transcript=ENST00000796802.1;source_transcript_name=ENST00000796802;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001138;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001138;transcript_name=HG003_chrY_T0001138;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001138:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11338611	11338839	.	-	.	source_transcript=ENST00000796802.1;source_transcript_name=ENST00000796802;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001138;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001138;transcript_name=HG003_chrY_T0001138;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001138:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11385388	.	-	.	source_transcript=ENST00000796802.1;source_transcript_name=ENST00000796802;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001138;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001138;transcript_name=HG003_chrY_T0001138;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001138:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11385389	11385448	.	-	.	source_transcript=ENST00000796802.1;source_transcript_name=ENST00000796802;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001138;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001138;transcript_name=HG003_chrY_T0001138;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001138:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11385449	11388446	.	-	.	source_transcript=ENST00000796802.1;source_transcript_name=ENST00000796802;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001138;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001138;transcript_name=HG003_chrY_T0001138;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001138:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796802.1;source_transcript_name=ENST00000796802;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001138;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001138;transcript_name=HG003_chrY_T0001138;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001138:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796802.1;source_transcript_name=ENST00000796802;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001138;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001138;transcript_name=HG003_chrY_T0001138;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001138:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390683	.	-	.	source_transcript=ENST00000796802.1;source_transcript_name=ENST00000796802;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001138;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001138;transcript_name=HG003_chrY_T0001138;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001138:4;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11338519	11390721	1000	-	.	source_transcript=ENST00000796803.1;source_transcript_name=ENST00000796803;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796803.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001139;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001139;gene_name=ENSG00000291032;ID=HG003_chrY_T0001139;Name=ENSG00000291032
HG003_chrY	CAT	exon	11338519	11338664	.	-	.	source_transcript=ENST00000796803.1;source_transcript_name=ENST00000796803;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796803.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001139;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001139;transcript_name=HG003_chrY_T0001139;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001139:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338665	11338777	.	-	.	source_transcript=ENST00000796803.1;source_transcript_name=ENST00000796803;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796803.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001139;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001139;transcript_name=HG003_chrY_T0001139;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001139:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11338778	11338839	.	-	.	source_transcript=ENST00000796803.1;source_transcript_name=ENST00000796803;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796803.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001139;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001139;transcript_name=HG003_chrY_T0001139;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001139:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11388446	.	-	.	source_transcript=ENST00000796803.1;source_transcript_name=ENST00000796803;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796803.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001139;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001139;transcript_name=HG003_chrY_T0001139;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001139:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796803.1;source_transcript_name=ENST00000796803;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796803.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001139;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001139;transcript_name=HG003_chrY_T0001139;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001139:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796803.1;source_transcript_name=ENST00000796803;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796803.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001139;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001139;transcript_name=HG003_chrY_T0001139;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001139:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390721	.	-	.	source_transcript=ENST00000796803.1;source_transcript_name=ENST00000796803;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796803.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001139;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001139;transcript_name=HG003_chrY_T0001139;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001139:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11338519	11390700	1000	-	.	source_transcript=ENST00000796804.1;source_transcript_name=ENST00000796804;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796804.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001140;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001140;gene_name=ENSG00000291032;ID=HG003_chrY_T0001140;Name=ENSG00000291032
HG003_chrY	CAT	exon	11338519	11338839	.	-	.	source_transcript=ENST00000796804.1;source_transcript_name=ENST00000796804;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796804.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001140;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001140;transcript_name=HG003_chrY_T0001140;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001140:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11385388	.	-	.	source_transcript=ENST00000796804.1;source_transcript_name=ENST00000796804;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796804.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001140;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001140;transcript_name=HG003_chrY_T0001140;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001140:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11385389	11385448	.	-	.	source_transcript=ENST00000796804.1;source_transcript_name=ENST00000796804;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796804.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001140;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001140;transcript_name=HG003_chrY_T0001140;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001140:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11385449	11388446	.	-	.	source_transcript=ENST00000796804.1;source_transcript_name=ENST00000796804;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796804.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001140;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001140;transcript_name=HG003_chrY_T0001140;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001140:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796804.1;source_transcript_name=ENST00000796804;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796804.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001140;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001140;transcript_name=HG003_chrY_T0001140;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001140:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796804.1;source_transcript_name=ENST00000796804;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796804.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001140;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001140;transcript_name=HG003_chrY_T0001140;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001140:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390700	.	-	.	source_transcript=ENST00000796804.1;source_transcript_name=ENST00000796804;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796804.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796804.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001140;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001140;transcript_name=HG003_chrY_T0001140;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001140:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11338519	11390195	1000	-	.	source_transcript=ENST00000796808.1;source_transcript_name=ENST00000796808;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796808.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001141;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001141;gene_name=ENSG00000291032;ID=HG003_chrY_T0001141;Name=ENSG00000291032
HG003_chrY	CAT	exon	11338519	11338839	.	-	.	source_transcript=ENST00000796808.1;source_transcript_name=ENST00000796808;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796808.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001141;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001141;transcript_name=HG003_chrY_T0001141;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001141:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11388446	.	-	.	source_transcript=ENST00000796808.1;source_transcript_name=ENST00000796808;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796808.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001141;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001141;transcript_name=HG003_chrY_T0001141;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001141:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796808.1;source_transcript_name=ENST00000796808;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796808.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001141;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001141;transcript_name=HG003_chrY_T0001141;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001141:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390048	.	-	.	source_transcript=ENST00000796808.1;source_transcript_name=ENST00000796808;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796808.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001141;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001141;transcript_name=HG003_chrY_T0001141;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001141:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390049	11390195	.	-	.	source_transcript=ENST00000796808.1;source_transcript_name=ENST00000796808;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796808.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796808.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001141;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001141;transcript_name=HG003_chrY_T0001141;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001141:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11338556	11390686	1000	-	.	source_transcript=ENST00000796807.1;source_transcript_name=ENST00000796807;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796807.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001142;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001142;gene_name=ENSG00000291032;ID=HG003_chrY_T0001142;Name=ENSG00000291032
HG003_chrY	CAT	exon	11338556	11338839	.	-	.	source_transcript=ENST00000796807.1;source_transcript_name=ENST00000796807;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001142;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001142;transcript_name=HG003_chrY_T0001142;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001142:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11388446	.	-	.	source_transcript=ENST00000796807.1;source_transcript_name=ENST00000796807;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001142;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001142;transcript_name=HG003_chrY_T0001142;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001142:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796807.1;source_transcript_name=ENST00000796807;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001142;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001142;transcript_name=HG003_chrY_T0001142;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001142:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11389917	.	-	.	source_transcript=ENST00000796807.1;source_transcript_name=ENST00000796807;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001142;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001142;transcript_name=HG003_chrY_T0001142;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001142:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11389918	11390158	.	-	.	source_transcript=ENST00000796807.1;source_transcript_name=ENST00000796807;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001142;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001142;transcript_name=HG003_chrY_T0001142;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001142:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11390159	11390640	.	-	.	source_transcript=ENST00000796807.1;source_transcript_name=ENST00000796807;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001142;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001142;transcript_name=HG003_chrY_T0001142;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001142:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390686	.	-	.	source_transcript=ENST00000796807.1;source_transcript_name=ENST00000796807;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796807.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796807.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001142;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001142;transcript_name=HG003_chrY_T0001142;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001142:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11338556	11390708	1000	-	.	source_transcript=ENST00000796806.1;source_transcript_name=ENST00000796806;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796806.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001143;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001143;gene_name=ENSG00000291032;ID=HG003_chrY_T0001143;Name=ENSG00000291032
HG003_chrY	CAT	exon	11338556	11338839	.	-	.	source_transcript=ENST00000796806.1;source_transcript_name=ENST00000796806;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796806.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001143;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001143;transcript_name=HG003_chrY_T0001143;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001143:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11388446	.	-	.	source_transcript=ENST00000796806.1;source_transcript_name=ENST00000796806;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796806.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001143;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001143;transcript_name=HG003_chrY_T0001143;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001143:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796806.1;source_transcript_name=ENST00000796806;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796806.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001143;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001143;transcript_name=HG003_chrY_T0001143;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001143:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11389917	.	-	.	source_transcript=ENST00000796806.1;source_transcript_name=ENST00000796806;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796806.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001143;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001143;transcript_name=HG003_chrY_T0001143;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001143:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11389918	11389937	.	-	.	source_transcript=ENST00000796806.1;source_transcript_name=ENST00000796806;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796806.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001143;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001143;transcript_name=HG003_chrY_T0001143;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001143:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11389938	11390640	.	-	.	source_transcript=ENST00000796806.1;source_transcript_name=ENST00000796806;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796806.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001143;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001143;transcript_name=HG003_chrY_T0001143;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001143:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390708	.	-	.	source_transcript=ENST00000796806.1;source_transcript_name=ENST00000796806;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796806.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796806.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001143;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001143;transcript_name=HG003_chrY_T0001143;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001143:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11338556	11390721	1000	-	.	source_transcript=ENST00000796805.1;source_transcript_name=ENST00000796805;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796805.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001144;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001144;gene_name=ENSG00000291032;ID=HG003_chrY_T0001144;Name=ENSG00000291032
HG003_chrY	CAT	exon	11338556	11338839	.	-	.	source_transcript=ENST00000796805.1;source_transcript_name=ENST00000796805;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796805.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001144;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001144;transcript_name=HG003_chrY_T0001144;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001144:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11338840	11354530	.	-	.	source_transcript=ENST00000796805.1;source_transcript_name=ENST00000796805;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796805.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001144;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001144;transcript_name=HG003_chrY_T0001144;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001144:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11354531	11354733	.	-	.	source_transcript=ENST00000796805.1;source_transcript_name=ENST00000796805;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796805.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001144;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001144;transcript_name=HG003_chrY_T0001144;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001144:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11354734	11388446	.	-	.	source_transcript=ENST00000796805.1;source_transcript_name=ENST00000796805;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796805.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001144;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001144;transcript_name=HG003_chrY_T0001144;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001144:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796805.1;source_transcript_name=ENST00000796805;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796805.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001144;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001144;transcript_name=HG003_chrY_T0001144;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001144:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796805.1;source_transcript_name=ENST00000796805;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796805.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001144;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001144;transcript_name=HG003_chrY_T0001144;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001144:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390721	.	-	.	source_transcript=ENST00000796805.1;source_transcript_name=ENST00000796805;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796805.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796805.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001144;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001144;transcript_name=HG003_chrY_T0001144;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001144:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11341653	11390730	1000	-	.	source_transcript=ENST00000796809.1;source_transcript_name=ENST00000796809;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796809.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001145;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001145;gene_name=ENSG00000291032;ID=HG003_chrY_T0001145;Name=ENSG00000291032
HG003_chrY	CAT	exon	11341653	11342919	.	-	.	source_transcript=ENST00000796809.1;source_transcript_name=ENST00000796809;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796809.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001145;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001145;transcript_name=HG003_chrY_T0001145;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001145:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11342920	11388446	.	-	.	source_transcript=ENST00000796809.1;source_transcript_name=ENST00000796809;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796809.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001145;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001145;transcript_name=HG003_chrY_T0001145;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001145:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796809.1;source_transcript_name=ENST00000796809;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796809.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001145;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001145;transcript_name=HG003_chrY_T0001145;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001145:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796809.1;source_transcript_name=ENST00000796809;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796809.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001145;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001145;transcript_name=HG003_chrY_T0001145;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001145:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390730	.	-	.	source_transcript=ENST00000796809.1;source_transcript_name=ENST00000796809;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796809.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001145;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001145;transcript_name=HG003_chrY_T0001145;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001145:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11342676	11390158	1000	-	.	source_transcript=ENST00000796811.1;source_transcript_name=ENST00000796811;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796811.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001146;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001146;gene_name=ENSG00000291032;ID=HG003_chrY_T0001146;Name=ENSG00000291032
HG003_chrY	CAT	exon	11342676	11342919	.	-	.	source_transcript=ENST00000796811.1;source_transcript_name=ENST00000796811;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796811.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001146;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001146;transcript_name=HG003_chrY_T0001146;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001146:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11342920	11388446	.	-	.	source_transcript=ENST00000796811.1;source_transcript_name=ENST00000796811;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796811.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001146;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001146;transcript_name=HG003_chrY_T0001146;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001146:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796811.1;source_transcript_name=ENST00000796811;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796811.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001146;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001146;transcript_name=HG003_chrY_T0001146;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001146:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390048	.	-	.	source_transcript=ENST00000796811.1;source_transcript_name=ENST00000796811;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796811.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001146;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001146;transcript_name=HG003_chrY_T0001146;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001146:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390049	11390158	.	-	.	source_transcript=ENST00000796811.1;source_transcript_name=ENST00000796811;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796811.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796811.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001146;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001146;transcript_name=HG003_chrY_T0001146;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001146:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11342678	11390158	1000	-	.	source_transcript=ENST00000796812.1;source_transcript_name=ENST00000796812;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796812.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001147;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001147;gene_name=ENSG00000291032;ID=HG003_chrY_T0001147;Name=ENSG00000291032
HG003_chrY	CAT	exon	11342678	11342919	.	-	.	source_transcript=ENST00000796812.1;source_transcript_name=ENST00000796812;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796812.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001147;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001147;transcript_name=HG003_chrY_T0001147;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001147:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11342920	11385388	.	-	.	source_transcript=ENST00000796812.1;source_transcript_name=ENST00000796812;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796812.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001147;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001147;transcript_name=HG003_chrY_T0001147;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001147:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11385389	11385448	.	-	.	source_transcript=ENST00000796812.1;source_transcript_name=ENST00000796812;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796812.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001147;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001147;transcript_name=HG003_chrY_T0001147;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001147:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11385449	11388446	.	-	.	source_transcript=ENST00000796812.1;source_transcript_name=ENST00000796812;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796812.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001147;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001147;transcript_name=HG003_chrY_T0001147;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001147:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796812.1;source_transcript_name=ENST00000796812;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796812.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001147;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001147;transcript_name=HG003_chrY_T0001147;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001147:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390048	.	-	.	source_transcript=ENST00000796812.1;source_transcript_name=ENST00000796812;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796812.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001147;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001147;transcript_name=HG003_chrY_T0001147;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001147:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390049	11390158	.	-	.	source_transcript=ENST00000796812.1;source_transcript_name=ENST00000796812;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796812.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001147;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001147;transcript_name=HG003_chrY_T0001147;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001147:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11343007	11390681	1000	-	.	source_transcript=ENST00000796810.1;source_transcript_name=ENST00000796810;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796810.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001148;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001148;gene_name=ENSG00000291032;ID=HG003_chrY_T0001148;Name=ENSG00000291032
HG003_chrY	CAT	exon	11343007	11343346	.	-	.	source_transcript=ENST00000796810.1;source_transcript_name=ENST00000796810;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796810.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001148;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001148;transcript_name=HG003_chrY_T0001148;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001148:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11343347	11388446	.	-	.	source_transcript=ENST00000796810.1;source_transcript_name=ENST00000796810;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796810.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001148;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001148;transcript_name=HG003_chrY_T0001148;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001148:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796810.1;source_transcript_name=ENST00000796810;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796810.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001148;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001148;transcript_name=HG003_chrY_T0001148;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001148:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796810.1;source_transcript_name=ENST00000796810;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796810.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001148;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001148;transcript_name=HG003_chrY_T0001148;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001148:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390681	.	-	.	source_transcript=ENST00000796810.1;source_transcript_name=ENST00000796810;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796810.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001148;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001148;transcript_name=HG003_chrY_T0001148;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001148:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11345279	11390726	1000	-	.	source_transcript=ENST00000796813.1;source_transcript_name=ENST00000796813;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796813.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001149;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001149;gene_name=ENSG00000291032;ID=HG003_chrY_T0001149;Name=ENSG00000291032
HG003_chrY	CAT	exon	11345279	11346083	.	-	.	source_transcript=ENST00000796813.1;source_transcript_name=ENST00000796813;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796813.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001149;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001149;transcript_name=HG003_chrY_T0001149;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001149:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11346084	11388446	.	-	.	source_transcript=ENST00000796813.1;source_transcript_name=ENST00000796813;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796813.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001149;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001149;transcript_name=HG003_chrY_T0001149;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001149:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796813.1;source_transcript_name=ENST00000796813;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796813.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001149;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001149;transcript_name=HG003_chrY_T0001149;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001149:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796813.1;source_transcript_name=ENST00000796813;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796813.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001149;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001149;transcript_name=HG003_chrY_T0001149;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001149:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390726	.	-	.	source_transcript=ENST00000796813.1;source_transcript_name=ENST00000796813;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796813.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001149;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001149;transcript_name=HG003_chrY_T0001149;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001149:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11348851	11390727	1000	-	.	source_transcript=ENST00000796814.1;source_transcript_name=ENST00000796814;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796814.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796814.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001150;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001150;gene_name=ENSG00000291032;ID=HG003_chrY_T0001150;Name=ENSG00000291032
HG003_chrY	CAT	exon	11348851	11349077	.	-	.	source_transcript=ENST00000796814.1;source_transcript_name=ENST00000796814;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796814.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796814.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001150;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001150;transcript_name=HG003_chrY_T0001150;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001150:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11349078	11388446	.	-	.	source_transcript=ENST00000796814.1;source_transcript_name=ENST00000796814;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796814.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796814.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001150;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001150;transcript_name=HG003_chrY_T0001150;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001150:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796814.1;source_transcript_name=ENST00000796814;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796814.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796814.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001150;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001150;transcript_name=HG003_chrY_T0001150;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001150:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796814.1;source_transcript_name=ENST00000796814;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796814.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796814.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001150;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001150;transcript_name=HG003_chrY_T0001150;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001150:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390727	.	-	.	source_transcript=ENST00000796814.1;source_transcript_name=ENST00000796814;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796814.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796814.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001150;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001150;transcript_name=HG003_chrY_T0001150;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001150:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11354255	11390708	1000	-	.	source_transcript=ENST00000796815.1;source_transcript_name=ENST00000796815;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796815.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796815.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001153;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001153;gene_name=ENSG00000291032;ID=HG003_chrY_T0001153;Name=ENSG00000291032
HG003_chrY	CAT	exon	11354255	11354733	.	-	.	source_transcript=ENST00000796815.1;source_transcript_name=ENST00000796815;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796815.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796815.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001153;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001153;transcript_name=HG003_chrY_T0001153;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001153:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11354734	11388446	.	-	.	source_transcript=ENST00000796815.1;source_transcript_name=ENST00000796815;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796815.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796815.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001153;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001153;transcript_name=HG003_chrY_T0001153;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001153:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796815.1;source_transcript_name=ENST00000796815;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796815.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796815.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001153;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001153;transcript_name=HG003_chrY_T0001153;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001153:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796815.1;source_transcript_name=ENST00000796815;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796815.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796815.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001153;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001153;transcript_name=HG003_chrY_T0001153;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001153:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390708	.	-	.	source_transcript=ENST00000796815.1;source_transcript_name=ENST00000796815;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796815.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796815.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001153;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001153;transcript_name=HG003_chrY_T0001153;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001153:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11379029	11390726	1000	-	.	source_transcript=ENST00000796816.1;source_transcript_name=ENST00000796816;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796816.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001154;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001154;gene_name=ENSG00000291032;ID=HG003_chrY_T0001154;Name=ENSG00000291032
HG003_chrY	CAT	exon	11379029	11379229	.	-	.	source_transcript=ENST00000796816.1;source_transcript_name=ENST00000796816;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001154;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001154;transcript_name=HG003_chrY_T0001154;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001154:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11379230	11385388	.	-	.	source_transcript=ENST00000796816.1;source_transcript_name=ENST00000796816;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001154;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001154;transcript_name=HG003_chrY_T0001154;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001154:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11385389	11385448	.	-	.	source_transcript=ENST00000796816.1;source_transcript_name=ENST00000796816;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001154;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001154;transcript_name=HG003_chrY_T0001154;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001154:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11385449	11388446	.	-	.	source_transcript=ENST00000796816.1;source_transcript_name=ENST00000796816;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001154;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001154;transcript_name=HG003_chrY_T0001154;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001154:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796816.1;source_transcript_name=ENST00000796816;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001154;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001154;transcript_name=HG003_chrY_T0001154;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001154:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796816.1;source_transcript_name=ENST00000796816;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001154;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001154;transcript_name=HG003_chrY_T0001154;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001154:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390726	.	-	.	source_transcript=ENST00000796816.1;source_transcript_name=ENST00000796816;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001154;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001154;transcript_name=HG003_chrY_T0001154;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001154:3;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11382105	11390726	1000	-	.	source_transcript=ENST00000796817.1;source_transcript_name=ENST00000796817;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796817.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001155;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001155;gene_name=ENSG00000291032;ID=HG003_chrY_T0001155;Name=ENSG00000291032
HG003_chrY	CAT	exon	11382105	11382384	.	-	.	source_transcript=ENST00000796817.1;source_transcript_name=ENST00000796817;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796817.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001155;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001155;transcript_name=HG003_chrY_T0001155;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001155:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11382385	11388446	.	-	.	source_transcript=ENST00000796817.1;source_transcript_name=ENST00000796817;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796817.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001155;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001155;transcript_name=HG003_chrY_T0001155;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001155:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796817.1;source_transcript_name=ENST00000796817;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796817.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001155;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001155;transcript_name=HG003_chrY_T0001155;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001155:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796817.1;source_transcript_name=ENST00000796817;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796817.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001155;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001155;transcript_name=HG003_chrY_T0001155;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001155:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390726	.	-	.	source_transcript=ENST00000796817.1;source_transcript_name=ENST00000796817;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796817.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796817.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001155;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001155;transcript_name=HG003_chrY_T0001155;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001155:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11385240	11390721	1000	-	.	source_transcript=ENST00000796818.1;source_transcript_name=ENST00000796818;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796818.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001156;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001156;gene_name=ENSG00000291032;ID=HG003_chrY_T0001156;Name=ENSG00000291032
HG003_chrY	CAT	exon	11385240	11385448	.	-	.	source_transcript=ENST00000796818.1;source_transcript_name=ENST00000796818;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796818.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001156;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001156;transcript_name=HG003_chrY_T0001156;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001156:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11385449	11388446	.	-	.	source_transcript=ENST00000796818.1;source_transcript_name=ENST00000796818;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796818.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001156;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001156;transcript_name=HG003_chrY_T0001156;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001156:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11388447	11388505	.	-	.	source_transcript=ENST00000796818.1;source_transcript_name=ENST00000796818;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796818.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001156;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001156;transcript_name=HG003_chrY_T0001156;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001156:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796818.1;source_transcript_name=ENST00000796818;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796818.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001156;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001156;transcript_name=HG003_chrY_T0001156;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001156:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390721	.	-	.	source_transcript=ENST00000796818.1;source_transcript_name=ENST00000796818;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796818.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796818.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001156;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001156;transcript_name=HG003_chrY_T0001156;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001156:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11387335	11390726	1000	-	.	source_transcript=ENST00000796819.1;source_transcript_name=ENST00000796819;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796819.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001157;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001157;gene_name=ENSG00000291032;ID=HG003_chrY_T0001157;Name=ENSG00000291032
HG003_chrY	CAT	exon	11387335	11388505	.	-	.	source_transcript=ENST00000796819.1;source_transcript_name=ENST00000796819;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001157;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001157;transcript_name=HG003_chrY_T0001157;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001157:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390640	.	-	.	source_transcript=ENST00000796819.1;source_transcript_name=ENST00000796819;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001157;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001157;transcript_name=HG003_chrY_T0001157;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001157:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390726	.	-	.	source_transcript=ENST00000796819.1;source_transcript_name=ENST00000796819;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001157;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001157;transcript_name=HG003_chrY_T0001157;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001157:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11387335	11390681	1000	-	.	source_transcript=ENST00000796820.1;source_transcript_name=ENST00000796820;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796820.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001158;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001158;gene_name=ENSG00000291032;ID=HG003_chrY_T0001158;Name=ENSG00000291032
HG003_chrY	CAT	exon	11387335	11388505	.	-	.	source_transcript=ENST00000796820.1;source_transcript_name=ENST00000796820;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796820.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001158;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001158;transcript_name=HG003_chrY_T0001158;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001158:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11390048	.	-	.	source_transcript=ENST00000796820.1;source_transcript_name=ENST00000796820;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796820.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001158;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001158;transcript_name=HG003_chrY_T0001158;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001158:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390049	11390158	.	-	.	source_transcript=ENST00000796820.1;source_transcript_name=ENST00000796820;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796820.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001158;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001158;transcript_name=HG003_chrY_T0001158;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001158:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11390159	11390640	.	-	.	source_transcript=ENST00000796820.1;source_transcript_name=ENST00000796820;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796820.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001158;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001158;transcript_name=HG003_chrY_T0001158;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001158:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11390641	11390681	.	-	.	source_transcript=ENST00000796820.1;source_transcript_name=ENST00000796820;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796820.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796820.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001158;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001158;transcript_name=HG003_chrY_T0001158;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001158:2;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	11388470	11390654	1000	-	.	source_transcript=ENST00000796821.1;source_transcript_name=ENST00000796821;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796821.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001159;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_G0000372;transcript_name=HG003_chrY_T0001159;gene_name=ENSG00000291032;ID=HG003_chrY_T0001159;Name=ENSG00000291032
HG003_chrY	CAT	exon	11388470	11388505	.	-	.	source_transcript=ENST00000796821.1;source_transcript_name=ENST00000796821;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796821.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001159;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001159;transcript_name=HG003_chrY_T0001159;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001159:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11388506	11389779	.	-	.	source_transcript=ENST00000796821.1;source_transcript_name=ENST00000796821;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796821.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001159;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001159;transcript_name=HG003_chrY_T0001159;gene_name=ENSG00000291032;ID=intron:HG003_chrY_T0001159:0;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11389780	11390654	.	-	.	source_transcript=ENST00000796821.1;source_transcript_name=ENST00000796821;source_gene=ENSG00000291032.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291032.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000796821.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000796821.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291032;transcript_id=HG003_chrY_T0001159;gene_id=HG003_chrY_G0000372;Parent=HG003_chrY_T0001159;transcript_name=HG003_chrY_T0001159;gene_name=ENSG00000291032;ID=exon:HG003_chrY_T0001159:1;Name=ENSG00000291032;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11319951	11320193	.	+	.	source_gene_common_name=ENSG00000274231;source_gene=ENSG00000274231.1;alternative_source_transcripts=ENST00000619901.1,ENST00000619901.1;gene_id=HG003_chrY_G0000373;gene_biotype=processed_pseudogene;gene_name=ENSG00000274231;gene_sources=liftoff;ID=HG003_chrY_G0000373;Name=ENSG00000274231
HG003_chrY	CAT	transcript	11319951	11320193	1000	+	.	source_transcript=ENST00000619901.1;source_transcript_name=ENST00000619901;source_gene=ENSG00000274231.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274231.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000619901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000619901.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274231;alternative_source_transcripts=ENST00000619901.1,ENST00000619901.1;transcript_id=HG003_chrY_T0001118;gene_id=HG003_chrY_G0000373;Parent=HG003_chrY_G0000373;transcript_name=HG003_chrY_T0001118;gene_name=ENSG00000274231;ID=HG003_chrY_T0001118;Name=ENSG00000274231
HG003_chrY	CAT	exon	11319951	11320193	.	+	.	source_transcript=ENST00000619901.1;source_transcript_name=ENST00000619901;source_gene=ENSG00000274231.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274231.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000619901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000619901.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274231;alternative_source_transcripts=ENST00000619901.1,ENST00000619901.1;transcript_id=HG003_chrY_T0001118;gene_id=HG003_chrY_G0000373;Parent=HG003_chrY_T0001118;transcript_name=HG003_chrY_T0001118;gene_name=ENSG00000274231;ID=exon:HG003_chrY_T0001118:0;Name=ENSG00000274231;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11329560	11334715	.	-	.	source_gene_common_name=ENSG00000278212;source_gene=ENSG00000278212.5;gene_id=HG003_chrY_G0000374;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000278212;gene_sources=liftoff;ID=HG003_chrY_G0000374;Name=ENSG00000278212
HG003_chrY	CAT	transcript	11329560	11334715	1000	-	.	source_transcript=ENST00000620700.2;source_transcript_name=ENST00000620700;source_gene=ENSG00000278212.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000278212.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000620700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000620700.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278212;transcript_id=HG003_chrY_T0001126;gene_id=HG003_chrY_G0000374;Parent=HG003_chrY_G0000374;transcript_name=HG003_chrY_T0001126;gene_name=ENSG00000278212;ID=HG003_chrY_T0001126;Name=ENSG00000278212
HG003_chrY	CAT	exon	11329560	11329772	.	-	.	source_transcript=ENST00000620700.2;source_transcript_name=ENST00000620700;source_gene=ENSG00000278212.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000278212.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000620700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000620700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278212;transcript_id=HG003_chrY_T0001126;gene_id=HG003_chrY_G0000374;Parent=HG003_chrY_T0001126;transcript_name=HG003_chrY_T0001126;gene_name=ENSG00000278212;ID=exon:HG003_chrY_T0001126:0;Name=ENSG00000278212;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11329773	11330587	.	-	.	source_transcript=ENST00000620700.2;source_transcript_name=ENST00000620700;source_gene=ENSG00000278212.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000278212.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000620700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000620700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278212;transcript_id=HG003_chrY_T0001126;gene_id=HG003_chrY_G0000374;Parent=HG003_chrY_T0001126;transcript_name=HG003_chrY_T0001126;gene_name=ENSG00000278212;ID=intron:HG003_chrY_T0001126:0;Name=ENSG00000278212;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11330588	11330742	.	-	.	source_transcript=ENST00000620700.2;source_transcript_name=ENST00000620700;source_gene=ENSG00000278212.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000278212.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000620700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000620700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278212;transcript_id=HG003_chrY_T0001126;gene_id=HG003_chrY_G0000374;Parent=HG003_chrY_T0001126;transcript_name=HG003_chrY_T0001126;gene_name=ENSG00000278212;ID=exon:HG003_chrY_T0001126:1;Name=ENSG00000278212;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11330743	11331355	.	-	.	source_transcript=ENST00000620700.2;source_transcript_name=ENST00000620700;source_gene=ENSG00000278212.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000278212.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000620700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000620700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278212;transcript_id=HG003_chrY_T0001126;gene_id=HG003_chrY_G0000374;Parent=HG003_chrY_T0001126;transcript_name=HG003_chrY_T0001126;gene_name=ENSG00000278212;ID=intron:HG003_chrY_T0001126:1;Name=ENSG00000278212;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11331356	11331586	.	-	.	source_transcript=ENST00000620700.2;source_transcript_name=ENST00000620700;source_gene=ENSG00000278212.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000278212.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000620700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000620700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278212;transcript_id=HG003_chrY_T0001126;gene_id=HG003_chrY_G0000374;Parent=HG003_chrY_T0001126;transcript_name=HG003_chrY_T0001126;gene_name=ENSG00000278212;ID=exon:HG003_chrY_T0001126:2;Name=ENSG00000278212;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11331587	11332269	.	-	.	source_transcript=ENST00000620700.2;source_transcript_name=ENST00000620700;source_gene=ENSG00000278212.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000278212.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000620700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000620700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278212;transcript_id=HG003_chrY_T0001126;gene_id=HG003_chrY_G0000374;Parent=HG003_chrY_T0001126;transcript_name=HG003_chrY_T0001126;gene_name=ENSG00000278212;ID=intron:HG003_chrY_T0001126:2;Name=ENSG00000278212;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11332270	11332390	.	-	.	source_transcript=ENST00000620700.2;source_transcript_name=ENST00000620700;source_gene=ENSG00000278212.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000278212.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000620700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000620700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278212;transcript_id=HG003_chrY_T0001126;gene_id=HG003_chrY_G0000374;Parent=HG003_chrY_T0001126;transcript_name=HG003_chrY_T0001126;gene_name=ENSG00000278212;ID=exon:HG003_chrY_T0001126:3;Name=ENSG00000278212;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11332391	11332754	.	-	.	source_transcript=ENST00000620700.2;source_transcript_name=ENST00000620700;source_gene=ENSG00000278212.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000278212.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000620700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000620700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278212;transcript_id=HG003_chrY_T0001126;gene_id=HG003_chrY_G0000374;Parent=HG003_chrY_T0001126;transcript_name=HG003_chrY_T0001126;gene_name=ENSG00000278212;ID=intron:HG003_chrY_T0001126:3;Name=ENSG00000278212;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11332755	11332825	.	-	.	source_transcript=ENST00000620700.2;source_transcript_name=ENST00000620700;source_gene=ENSG00000278212.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000278212.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000620700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000620700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278212;transcript_id=HG003_chrY_T0001126;gene_id=HG003_chrY_G0000374;Parent=HG003_chrY_T0001126;transcript_name=HG003_chrY_T0001126;gene_name=ENSG00000278212;ID=exon:HG003_chrY_T0001126:4;Name=ENSG00000278212;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11332826	11334238	.	-	.	source_transcript=ENST00000620700.2;source_transcript_name=ENST00000620700;source_gene=ENSG00000278212.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000278212.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000620700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000620700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278212;transcript_id=HG003_chrY_T0001126;gene_id=HG003_chrY_G0000374;Parent=HG003_chrY_T0001126;transcript_name=HG003_chrY_T0001126;gene_name=ENSG00000278212;ID=intron:HG003_chrY_T0001126:4;Name=ENSG00000278212;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11334239	11334715	.	-	.	source_transcript=ENST00000620700.2;source_transcript_name=ENST00000620700;source_gene=ENSG00000278212.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000278212.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000620700.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000620700.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278212;transcript_id=HG003_chrY_T0001126;gene_id=HG003_chrY_G0000374;Parent=HG003_chrY_T0001126;transcript_name=HG003_chrY_T0001126;gene_name=ENSG00000278212;ID=exon:HG003_chrY_T0001126:5;Name=ENSG00000278212;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11349318	11349521	.	+	.	source_gene_common_name=ANKRD20A6P;source_gene=ENSG00000274502.1;alternative_source_transcripts=ENST00000618763.1,ENST00000618763.1;gene_id=HG003_chrY_G0000375;gene_biotype=processed_pseudogene;gene_name=ANKRD20A6P;gene_sources=liftoff;ID=HG003_chrY_G0000375;Name=ANKRD20A6P
HG003_chrY	CAT	transcript	11349318	11349521	1000	+	.	source_transcript=ENST00000618763.1;source_transcript_name=ANKRD20A6P-201;source_gene=ENSG00000274502.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274502.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000618763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618763.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANKRD20A6P;alternative_source_transcripts=ENST00000618763.1,ENST00000618763.1;transcript_id=HG003_chrY_T0001151;gene_id=HG003_chrY_G0000375;Parent=HG003_chrY_G0000375;transcript_name=HG003_chrY_T0001151;gene_name=ANKRD20A6P;ID=HG003_chrY_T0001151;Name=ANKRD20A6P
HG003_chrY	CAT	exon	11349318	11349521	.	+	.	source_transcript=ENST00000618763.1;source_transcript_name=ANKRD20A6P-201;source_gene=ENSG00000274502.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274502.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000618763.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618763.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANKRD20A6P;alternative_source_transcripts=ENST00000618763.1,ENST00000618763.1;transcript_id=HG003_chrY_T0001151;gene_id=HG003_chrY_G0000375;Parent=HG003_chrY_T0001151;transcript_name=HG003_chrY_T0001151;gene_name=ANKRD20A6P;ID=exon:HG003_chrY_T0001151:0;Name=ANKRD20A6P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11354009	11354519	.	+	.	source_gene_common_name=SNX18P1Y;source_gene=ENSG00000274162.1;alternative_source_transcripts=ENST00000616231.1,ENST00000616231.1;gene_id=HG003_chrY_G0000376;gene_biotype=processed_pseudogene;gene_name=SNX18P1Y;gene_sources=liftoff;ID=HG003_chrY_G0000376;Name=SNX18P1Y
HG003_chrY	CAT	transcript	11354009	11354519	1000	+	.	source_transcript=ENST00000616231.1;source_transcript_name=SNX18P1Y-201;source_gene=ENSG00000274162.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274162.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000616231.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000616231.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SNX18P1Y;alternative_source_transcripts=ENST00000616231.1,ENST00000616231.1;transcript_id=HG003_chrY_T0001152;gene_id=HG003_chrY_G0000376;Parent=HG003_chrY_G0000376;transcript_name=HG003_chrY_T0001152;gene_name=SNX18P1Y;ID=HG003_chrY_T0001152;Name=SNX18P1Y
HG003_chrY	CAT	exon	11354009	11354519	.	+	.	source_transcript=ENST00000616231.1;source_transcript_name=SNX18P1Y-201;source_gene=ENSG00000274162.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274162.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000616231.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000616231.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SNX18P1Y;alternative_source_transcripts=ENST00000616231.1,ENST00000616231.1;transcript_id=HG003_chrY_T0001152;gene_id=HG003_chrY_G0000376;Parent=HG003_chrY_T0001152;transcript_name=HG003_chrY_T0001152;gene_name=SNX18P1Y;ID=exon:HG003_chrY_T0001152:0;Name=SNX18P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11482609	11483872	.	+	.	source_gene_common_name=DUX4L16;source_gene=ENSG00000258567.1;alternative_source_transcripts=ENST00000555130.1,ENST00000555130.1;gene_id=HG003_chrY_G0000377;gene_biotype=unprocessed_pseudogene;gene_name=DUX4L16;gene_sources=liftoff;ID=HG003_chrY_G0000377;Name=DUX4L16
HG003_chrY	CAT	transcript	11482609	11483872	1000	+	.	source_transcript=ENST00000555130.1;source_transcript_name=DUX4L16-201;source_gene=ENSG00000258567.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000258567.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000555130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000555130.1;transcript_score=199.921;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DUX4L16;alternative_source_transcripts=ENST00000555130.1,ENST00000555130.1;transcript_id=HG003_chrY_T0001160;gene_id=HG003_chrY_G0000377;Parent=HG003_chrY_G0000377;transcript_name=HG003_chrY_T0001160;gene_name=DUX4L16;ID=HG003_chrY_T0001160;Name=DUX4L16
HG003_chrY	CAT	exon	11482609	11483872	.	+	.	source_transcript=ENST00000555130.1;source_transcript_name=DUX4L16-201;source_gene=ENSG00000258567.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000258567.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000555130.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000555130.1;transcript_score=199.921;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DUX4L16;alternative_source_transcripts=ENST00000555130.1,ENST00000555130.1;transcript_id=HG003_chrY_T0001160;gene_id=HG003_chrY_G0000377;Parent=HG003_chrY_T0001160;transcript_name=HG003_chrY_T0001160;gene_name=DUX4L16;ID=exon:HG003_chrY_T0001160:0;Name=DUX4L16;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11490612	11491878	.	+	.	source_gene_common_name=DUX4L17;source_gene=ENSG00000259154.1;alternative_source_transcripts=ENST00000557360.1,ENST00000557360.1;gene_id=HG003_chrY_G0000378;gene_biotype=unprocessed_pseudogene;gene_name=DUX4L17;gene_sources=liftoff;ID=HG003_chrY_G0000378;Name=DUX4L17
HG003_chrY	CAT	transcript	11490612	11491878	1000	+	.	source_transcript=ENST00000557360.1;source_transcript_name=DUX4L17-201;source_gene=ENSG00000259154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000259154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000557360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000557360.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DUX4L17;alternative_source_transcripts=ENST00000557360.1,ENST00000557360.1;transcript_id=HG003_chrY_T0001161;gene_id=HG003_chrY_G0000378;Parent=HG003_chrY_G0000378;transcript_name=HG003_chrY_T0001161;gene_name=DUX4L17;ID=HG003_chrY_T0001161;Name=DUX4L17
HG003_chrY	CAT	exon	11490612	11491878	.	+	.	source_transcript=ENST00000557360.1;source_transcript_name=DUX4L17-201;source_gene=ENSG00000259154.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000259154.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000557360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000557360.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DUX4L17;alternative_source_transcripts=ENST00000557360.1,ENST00000557360.1;transcript_id=HG003_chrY_T0001161;gene_id=HG003_chrY_G0000378;Parent=HG003_chrY_T0001161;transcript_name=HG003_chrY_T0001161;gene_name=DUX4L17;ID=exon:HG003_chrY_T0001161:0;Name=DUX4L17;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11497248	11498514	.	+	.	source_gene_common_name=DUX4L18;source_gene=ENSG00000259029.1;alternative_source_transcripts=ENST00000553347.1,ENST00000553347.1;gene_id=HG003_chrY_G0000379;gene_biotype=unprocessed_pseudogene;gene_name=DUX4L18;gene_sources=liftoff;ID=HG003_chrY_G0000379;Name=DUX4L18
HG003_chrY	CAT	transcript	11497248	11498514	1000	+	.	source_transcript=ENST00000553347.1;source_transcript_name=DUX4L18-201;source_gene=ENSG00000259029.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000259029.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000553347.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000553347.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DUX4L18;alternative_source_transcripts=ENST00000553347.1,ENST00000553347.1;transcript_id=HG003_chrY_T0001162;gene_id=HG003_chrY_G0000379;Parent=HG003_chrY_G0000379;transcript_name=HG003_chrY_T0001162;gene_name=DUX4L18;ID=HG003_chrY_T0001162;Name=DUX4L18
HG003_chrY	CAT	exon	11497248	11498514	.	+	.	source_transcript=ENST00000553347.1;source_transcript_name=DUX4L18-201;source_gene=ENSG00000259029.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000259029.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000553347.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000553347.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DUX4L18;alternative_source_transcripts=ENST00000553347.1,ENST00000553347.1;transcript_id=HG003_chrY_T0001162;gene_id=HG003_chrY_G0000379;Parent=HG003_chrY_T0001162;transcript_name=HG003_chrY_T0001162;gene_name=DUX4L18;ID=exon:HG003_chrY_T0001162:0;Name=DUX4L18;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11508021	11509287	.	+	.	source_gene_common_name=DUX4L19;source_gene=ENSG00000258991.1;alternative_source_transcripts=ENST00000557448.1,ENST00000557448.1;gene_id=HG003_chrY_G0000380;gene_biotype=unprocessed_pseudogene;gene_name=DUX4L19;gene_sources=liftoff;ID=HG003_chrY_G0000380;Name=DUX4L19
HG003_chrY	CAT	transcript	11508021	11509287	1000	+	.	source_transcript=ENST00000557448.1;source_transcript_name=DUX4L19-201;source_gene=ENSG00000258991.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000258991.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000557448.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000557448.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DUX4L19;alternative_source_transcripts=ENST00000557448.1,ENST00000557448.1;transcript_id=HG003_chrY_T0001163;gene_id=HG003_chrY_G0000380;Parent=HG003_chrY_G0000380;transcript_name=HG003_chrY_T0001163;gene_name=DUX4L19;ID=HG003_chrY_T0001163;Name=DUX4L19
HG003_chrY	CAT	exon	11508021	11509287	.	+	.	source_transcript=ENST00000557448.1;source_transcript_name=DUX4L19-201;source_gene=ENSG00000258991.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000258991.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000557448.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000557448.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DUX4L19;alternative_source_transcripts=ENST00000557448.1,ENST00000557448.1;transcript_id=HG003_chrY_T0001163;gene_id=HG003_chrY_G0000380;Parent=HG003_chrY_T0001163;transcript_name=HG003_chrY_T0001163;gene_name=DUX4L19;ID=exon:HG003_chrY_T0001163:0;Name=DUX4L19;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11511319	11513385	.	+	.	source_gene_common_name=PABPC1P5;source_gene=ENSG00000270455.1;alternative_source_transcripts=ENST00000603738.1,ENST00000603738.1;gene_id=HG003_chrY_G0000381;gene_biotype=processed_pseudogene;gene_name=PABPC1P5;gene_sources=liftoff;ID=HG003_chrY_G0000381;Name=PABPC1P5
HG003_chrY	CAT	transcript	11511319	11513385	1000	+	.	source_transcript=ENST00000603738.1;source_transcript_name=PABPC1P5-201;source_gene=ENSG00000270455.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000270455.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000603738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000603738.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PABPC1P5;alternative_source_transcripts=ENST00000603738.1,ENST00000603738.1;transcript_id=HG003_chrY_T0001164;gene_id=HG003_chrY_G0000381;Parent=HG003_chrY_G0000381;transcript_name=HG003_chrY_T0001164;gene_name=PABPC1P5;ID=HG003_chrY_T0001164;Name=PABPC1P5
HG003_chrY	CAT	exon	11511319	11511487	.	+	.	source_transcript=ENST00000603738.1;source_transcript_name=PABPC1P5-201;source_gene=ENSG00000270455.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000270455.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000603738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000603738.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PABPC1P5;alternative_source_transcripts=ENST00000603738.1,ENST00000603738.1;transcript_id=HG003_chrY_T0001164;gene_id=HG003_chrY_G0000381;Parent=HG003_chrY_T0001164;transcript_name=HG003_chrY_T0001164;gene_name=PABPC1P5;ID=exon:HG003_chrY_T0001164:0;Name=PABPC1P5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11511488	11511878	.	+	.	source_transcript=ENST00000603738.1;source_transcript_name=PABPC1P5-201;source_gene=ENSG00000270455.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000270455.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000603738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000603738.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PABPC1P5;alternative_source_transcripts=ENST00000603738.1,ENST00000603738.1;transcript_id=HG003_chrY_T0001164;gene_id=HG003_chrY_G0000381;Parent=HG003_chrY_T0001164;transcript_name=HG003_chrY_T0001164;gene_name=PABPC1P5;ID=intron:HG003_chrY_T0001164:0;Name=PABPC1P5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11511879	11513385	.	+	.	source_transcript=ENST00000603738.1;source_transcript_name=PABPC1P5-201;source_gene=ENSG00000270455.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000270455.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000603738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000603738.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PABPC1P5;alternative_source_transcripts=ENST00000603738.1,ENST00000603738.1;transcript_id=HG003_chrY_T0001164;gene_id=HG003_chrY_G0000381;Parent=HG003_chrY_T0001164;transcript_name=HG003_chrY_T0001164;gene_name=PABPC1P5;ID=exon:HG003_chrY_T0001164:1;Name=PABPC1P5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11516271	11561365	.	-	.	source_gene_common_name=SLC9B1P1;source_gene=ENSG00000183704.7;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;gene_id=HG003_chrY_G0000382;gene_biotype=unprocessed_pseudogene;gene_name=SLC9B1P1;gene_sources=liftoff;ID=HG003_chrY_G0000382;Name=SLC9B1P1
HG003_chrY	CAT	transcript	11516271	11561365	1000	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_G0000382;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=HG003_chrY_T0001165;Name=SLC9B1P1
HG003_chrY	CAT	exon	11516271	11516486	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=exon:HG003_chrY_T0001165:0;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11516487	11520659	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=intron:HG003_chrY_T0001165:0;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11520660	11520796	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=exon:HG003_chrY_T0001165:1;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11520797	11521683	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=intron:HG003_chrY_T0001165:1;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11521684	11521792	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=exon:HG003_chrY_T0001165:2;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11521793	11525576	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=intron:HG003_chrY_T0001165:2;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11525577	11525726	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=exon:HG003_chrY_T0001165:3;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11525727	11526568	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=intron:HG003_chrY_T0001165:3;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11526569	11526675	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=exon:HG003_chrY_T0001165:4;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11526676	11544558	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=intron:HG003_chrY_T0001165:4;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11544559	11544734	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=exon:HG003_chrY_T0001165:5;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11544735	11557305	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=intron:HG003_chrY_T0001165:5;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11557306	11557433	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=exon:HG003_chrY_T0001165:6;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11557434	11558547	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=intron:HG003_chrY_T0001165:6;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11558548	11558690	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=exon:HG003_chrY_T0001165:7;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11558691	11561194	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=intron:HG003_chrY_T0001165:7;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11561195	11561365	.	-	.	source_transcript=ENST00000331172.7;source_transcript_name=SLC9B1P1-201;source_gene=ENSG00000183704.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000183704.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000331172.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000331172.7;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC9B1P1;alternative_source_transcripts=ENST00000331172.7,ENST00000331172.7;transcript_id=HG003_chrY_T0001165;gene_id=HG003_chrY_G0000382;Parent=HG003_chrY_T0001165;transcript_name=HG003_chrY_T0001165;gene_name=SLC9B1P1;ID=exon:HG003_chrY_T0001165:8;Name=SLC9B1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11571381	11572758	.	+	.	source_gene_common_name=ACTR3BP1;source_gene=ENSG00000270242.1;alternative_source_transcripts=ENST00000605584.1,ENST00000605584.1;gene_id=HG003_chrY_G0000383;gene_biotype=processed_pseudogene;gene_name=ACTR3BP1;gene_sources=liftoff;ID=HG003_chrY_G0000383;Name=ACTR3BP1
HG003_chrY	CAT	transcript	11571381	11572758	1000	+	.	source_transcript=ENST00000605584.1;source_transcript_name=ACTR3BP1-201;source_gene=ENSG00000270242.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000270242.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000605584.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000605584.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ACTR3BP1;alternative_source_transcripts=ENST00000605584.1,ENST00000605584.1;transcript_id=HG003_chrY_T0001166;gene_id=HG003_chrY_G0000383;Parent=HG003_chrY_G0000383;transcript_name=HG003_chrY_T0001166;gene_name=ACTR3BP1;ID=HG003_chrY_T0001166;Name=ACTR3BP1
HG003_chrY	CAT	exon	11571381	11571421	.	+	.	source_transcript=ENST00000605584.1;source_transcript_name=ACTR3BP1-201;source_gene=ENSG00000270242.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000270242.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000605584.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000605584.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ACTR3BP1;alternative_source_transcripts=ENST00000605584.1,ENST00000605584.1;transcript_id=HG003_chrY_T0001166;gene_id=HG003_chrY_G0000383;Parent=HG003_chrY_T0001166;transcript_name=HG003_chrY_T0001166;gene_name=ACTR3BP1;ID=exon:HG003_chrY_T0001166:0;Name=ACTR3BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11571422	11571552	.	+	.	source_transcript=ENST00000605584.1;source_transcript_name=ACTR3BP1-201;source_gene=ENSG00000270242.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000270242.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000605584.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000605584.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ACTR3BP1;alternative_source_transcripts=ENST00000605584.1,ENST00000605584.1;transcript_id=HG003_chrY_T0001166;gene_id=HG003_chrY_G0000383;Parent=HG003_chrY_T0001166;transcript_name=HG003_chrY_T0001166;gene_name=ACTR3BP1;ID=intron:HG003_chrY_T0001166:0;Name=ACTR3BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11571553	11572758	.	+	.	source_transcript=ENST00000605584.1;source_transcript_name=ACTR3BP1-201;source_gene=ENSG00000270242.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000270242.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000605584.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000605584.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ACTR3BP1;alternative_source_transcripts=ENST00000605584.1,ENST00000605584.1;transcript_id=HG003_chrY_T0001166;gene_id=HG003_chrY_G0000383;Parent=HG003_chrY_T0001166;transcript_name=HG003_chrY_T0001166;gene_name=ACTR3BP1;ID=exon:HG003_chrY_T0001166:1;Name=ACTR3BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11588237	11594405	.	+	.	source_gene_common_name=CHEK2P1;source_gene=ENSG00000275828.1;alternative_source_transcripts=ENST00000614446.1,ENST00000614446.1;gene_id=HG003_chrY_G0000384;gene_biotype=unprocessed_pseudogene;gene_name=CHEK2P1;gene_sources=liftoff;ID=HG003_chrY_G0000384;Name=CHEK2P1
HG003_chrY	CAT	transcript	11588237	11594405	1000	+	.	source_transcript=ENST00000614446.1;source_transcript_name=CHEK2P1-201;source_gene=ENSG00000275828.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275828.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000614446.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614446.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CHEK2P1;alternative_source_transcripts=ENST00000614446.1,ENST00000614446.1;transcript_id=HG003_chrY_T0001167;gene_id=HG003_chrY_G0000384;Parent=HG003_chrY_G0000384;transcript_name=HG003_chrY_T0001167;gene_name=CHEK2P1;ID=HG003_chrY_T0001167;Name=CHEK2P1
HG003_chrY	CAT	exon	11588237	11588322	.	+	.	source_transcript=ENST00000614446.1;source_transcript_name=CHEK2P1-201;source_gene=ENSG00000275828.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275828.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000614446.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614446.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CHEK2P1;alternative_source_transcripts=ENST00000614446.1,ENST00000614446.1;transcript_id=HG003_chrY_T0001167;gene_id=HG003_chrY_G0000384;Parent=HG003_chrY_T0001167;transcript_name=HG003_chrY_T0001167;gene_name=CHEK2P1;ID=exon:HG003_chrY_T0001167:0;Name=CHEK2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11588323	11593085	.	+	.	source_transcript=ENST00000614446.1;source_transcript_name=CHEK2P1-201;source_gene=ENSG00000275828.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275828.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000614446.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614446.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CHEK2P1;alternative_source_transcripts=ENST00000614446.1,ENST00000614446.1;transcript_id=HG003_chrY_T0001167;gene_id=HG003_chrY_G0000384;Parent=HG003_chrY_T0001167;transcript_name=HG003_chrY_T0001167;gene_name=CHEK2P1;ID=intron:HG003_chrY_T0001167:0;Name=CHEK2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11593086	11593166	.	+	.	source_transcript=ENST00000614446.1;source_transcript_name=CHEK2P1-201;source_gene=ENSG00000275828.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275828.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000614446.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614446.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CHEK2P1;alternative_source_transcripts=ENST00000614446.1,ENST00000614446.1;transcript_id=HG003_chrY_T0001167;gene_id=HG003_chrY_G0000384;Parent=HG003_chrY_T0001167;transcript_name=HG003_chrY_T0001167;gene_name=CHEK2P1;ID=exon:HG003_chrY_T0001167:1;Name=CHEK2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11593167	11594318	.	+	.	source_transcript=ENST00000614446.1;source_transcript_name=CHEK2P1-201;source_gene=ENSG00000275828.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275828.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000614446.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614446.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CHEK2P1;alternative_source_transcripts=ENST00000614446.1,ENST00000614446.1;transcript_id=HG003_chrY_T0001167;gene_id=HG003_chrY_G0000384;Parent=HG003_chrY_T0001167;transcript_name=HG003_chrY_T0001167;gene_name=CHEK2P1;ID=intron:HG003_chrY_T0001167:1;Name=CHEK2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11594319	11594405	.	+	.	source_transcript=ENST00000614446.1;source_transcript_name=CHEK2P1-201;source_gene=ENSG00000275828.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000275828.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000614446.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614446.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CHEK2P1;alternative_source_transcripts=ENST00000614446.1,ENST00000614446.1;transcript_id=HG003_chrY_T0001167;gene_id=HG003_chrY_G0000384;Parent=HG003_chrY_T0001167;transcript_name=HG003_chrY_T0001167;gene_name=CHEK2P1;ID=exon:HG003_chrY_T0001167:2;Name=CHEK2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11621107	11621253	.	-	.	source_gene_common_name=MTND1P12;source_gene=ENSG00000225433.3;alternative_source_transcripts=ENST00000455231.3,ENST00000455231.3;gene_id=HG003_chrY_G0000385;gene_biotype=unprocessed_pseudogene;gene_name=MTND1P12;gene_sources=liftoff;ID=HG003_chrY_G0000385;Name=MTND1P12
HG003_chrY	CAT	transcript	11621107	11621253	1000	-	.	source_transcript=ENST00000455231.3;source_transcript_name=MTND1P12-201;source_gene=ENSG00000225433.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225433.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455231.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000455231.3;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MTND1P12;alternative_source_transcripts=ENST00000455231.3,ENST00000455231.3;transcript_id=HG003_chrY_T0001168;gene_id=HG003_chrY_G0000385;Parent=HG003_chrY_G0000385;transcript_name=HG003_chrY_T0001168;gene_name=MTND1P12;ID=HG003_chrY_T0001168;Name=MTND1P12
HG003_chrY	CAT	exon	11621107	11621253	.	-	.	source_transcript=ENST00000455231.3;source_transcript_name=MTND1P12-201;source_gene=ENSG00000225433.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225433.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455231.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000455231.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MTND1P12;alternative_source_transcripts=ENST00000455231.3,ENST00000455231.3;transcript_id=HG003_chrY_T0001168;gene_id=HG003_chrY_G0000385;Parent=HG003_chrY_T0001168;transcript_name=HG003_chrY_T0001168;gene_name=MTND1P12;ID=exon:HG003_chrY_T0001168:0;Name=MTND1P12;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11621397	11621790	.	-	.	source_gene_common_name=ENSG00000224567;source_gene=ENSG00000224567.2;alternative_source_transcripts=ENST00000426062.2,ENST00000426062.2;gene_id=HG003_chrY_G0000386;gene_biotype=processed_pseudogene;gene_name=ENSG00000224567;gene_sources=liftoff;ID=HG003_chrY_G0000386;Name=ENSG00000224567
HG003_chrY	CAT	transcript	11621397	11621790	1000	-	.	source_transcript=ENST00000426062.2;source_transcript_name=ENST00000426062;source_gene=ENSG00000224567.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224567.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000426062.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000426062.2;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224567;alternative_source_transcripts=ENST00000426062.2,ENST00000426062.2;transcript_id=HG003_chrY_T0001169;gene_id=HG003_chrY_G0000386;Parent=HG003_chrY_G0000386;transcript_name=HG003_chrY_T0001169;gene_name=ENSG00000224567;ID=HG003_chrY_T0001169;Name=ENSG00000224567
HG003_chrY	CAT	exon	11621397	11621790	.	-	.	source_transcript=ENST00000426062.2;source_transcript_name=ENST00000426062;source_gene=ENSG00000224567.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224567.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000426062.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000426062.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224567;alternative_source_transcripts=ENST00000426062.2,ENST00000426062.2;transcript_id=HG003_chrY_T0001169;gene_id=HG003_chrY_G0000386;Parent=HG003_chrY_T0001169;transcript_name=HG003_chrY_T0001169;gene_name=ENSG00000224567;ID=exon:HG003_chrY_T0001169:0;Name=ENSG00000224567;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	11649418	11649928	.	-	.	source_gene_common_name=ENSG00000271375;source_gene=ENSG00000271375.1;alternative_source_transcripts=ENST00000604178.1,ENST00000604178.1;gene_id=HG003_chrY_G0000387;gene_biotype=processed_pseudogene;gene_name=ENSG00000271375;gene_sources=liftoff;ID=HG003_chrY_G0000387;Name=ENSG00000271375
HG003_chrY	CAT	transcript	11649418	11649928	1000	-	.	source_transcript=ENST00000604178.1;source_transcript_name=ENST00000604178;source_gene=ENSG00000271375.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000271375.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000604178.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000604178.1;transcript_score=299.743;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000271375;alternative_source_transcripts=ENST00000604178.1,ENST00000604178.1;transcript_id=HG003_chrY_T0001170;gene_id=HG003_chrY_G0000387;Parent=HG003_chrY_G0000387;transcript_name=HG003_chrY_T0001170;gene_name=ENSG00000271375;ID=HG003_chrY_T0001170;Name=ENSG00000271375
HG003_chrY	CAT	exon	11649418	11649748	.	-	.	source_transcript=ENST00000604178.1;source_transcript_name=ENST00000604178;source_gene=ENSG00000271375.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000271375.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000604178.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000604178.1;transcript_score=299.743;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000271375;alternative_source_transcripts=ENST00000604178.1,ENST00000604178.1;transcript_id=HG003_chrY_T0001170;gene_id=HG003_chrY_G0000387;Parent=HG003_chrY_T0001170;transcript_name=HG003_chrY_T0001170;gene_name=ENSG00000271375;ID=exon:HG003_chrY_T0001170:0;Name=ENSG00000271375;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	11649749	11649870	.	-	.	source_transcript=ENST00000604178.1;source_transcript_name=ENST00000604178;source_gene=ENSG00000271375.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000271375.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000604178.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000604178.1;transcript_score=299.743;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000271375;alternative_source_transcripts=ENST00000604178.1,ENST00000604178.1;transcript_id=HG003_chrY_T0001170;gene_id=HG003_chrY_G0000387;Parent=HG003_chrY_T0001170;transcript_name=HG003_chrY_T0001170;gene_name=ENSG00000271375;ID=intron:HG003_chrY_T0001170:0;Name=ENSG00000271375;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	11649871	11649928	.	-	.	source_transcript=ENST00000604178.1;source_transcript_name=ENST00000604178;source_gene=ENSG00000271375.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000271375.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000604178.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000604178.1;transcript_score=299.743;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000271375;alternative_source_transcripts=ENST00000604178.1,ENST00000604178.1;transcript_id=HG003_chrY_T0001170;gene_id=HG003_chrY_G0000387;Parent=HG003_chrY_T0001170;transcript_name=HG003_chrY_T0001170;gene_name=ENSG00000271375;ID=exon:HG003_chrY_T0001170:1;Name=ENSG00000271375;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	12642336	12643810	.	-	.	source_gene_common_name=RCC2P1;source_gene=ENSG00000234385.1;alternative_source_transcripts=ENST00000452257.1,ENST00000452257.1;gene_id=HG003_chrY_G0000388;gene_biotype=processed_pseudogene;gene_name=RCC2P1;gene_sources=liftoff;ID=HG003_chrY_G0000388;Name=RCC2P1
HG003_chrY	CAT	transcript	12642336	12643810	1000	-	.	source_transcript=ENST00000452257.1;source_transcript_name=RCC2P1-201;source_gene=ENSG00000234385.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234385.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000452257.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452257.1;transcript_score=199.864;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RCC2P1;alternative_source_transcripts=ENST00000452257.1,ENST00000452257.1;transcript_id=HG003_chrY_T0001171;gene_id=HG003_chrY_G0000388;Parent=HG003_chrY_G0000388;transcript_name=HG003_chrY_T0001171;gene_name=RCC2P1;ID=HG003_chrY_T0001171;Name=RCC2P1
HG003_chrY	CAT	exon	12642336	12643810	.	-	.	source_transcript=ENST00000452257.1;source_transcript_name=RCC2P1-201;source_gene=ENSG00000234385.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234385.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000452257.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452257.1;transcript_score=199.864;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RCC2P1;alternative_source_transcripts=ENST00000452257.1,ENST00000452257.1;transcript_id=HG003_chrY_T0001171;gene_id=HG003_chrY_G0000388;Parent=HG003_chrY_T0001171;transcript_name=HG003_chrY_T0001171;gene_name=RCC2P1;ID=exon:HG003_chrY_T0001171:0;Name=RCC2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	12783772	12785005	.	-	.	source_gene_common_name=ASS1P6;source_gene=ENSG00000215583.3;alternative_source_transcripts=ENST00000421118.1,ENST00000421118.1;gene_id=HG003_chrY_G0000389;gene_biotype=processed_pseudogene;gene_name=ASS1P6;gene_sources=liftoff;ID=HG003_chrY_G0000389;Name=ASS1P6
HG003_chrY	CAT	transcript	12783772	12785005	1000	-	.	source_transcript=ENST00000421118.1;source_transcript_name=ASS1P6-201;source_gene=ENSG00000215583.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000215583.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000421118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421118.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASS1P6;alternative_source_transcripts=ENST00000421118.1,ENST00000421118.1;transcript_id=HG003_chrY_T0001172;gene_id=HG003_chrY_G0000389;Parent=HG003_chrY_G0000389;transcript_name=HG003_chrY_T0001172;gene_name=ASS1P6;ID=HG003_chrY_T0001172;Name=ASS1P6
HG003_chrY	CAT	exon	12783772	12785005	.	-	.	source_transcript=ENST00000421118.1;source_transcript_name=ASS1P6-201;source_gene=ENSG00000215583.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000215583.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000421118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421118.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ASS1P6;alternative_source_transcripts=ENST00000421118.1,ENST00000421118.1;transcript_id=HG003_chrY_T0001172;gene_id=HG003_chrY_G0000389;Parent=HG003_chrY_T0001172;transcript_name=HG003_chrY_T0001172;gene_name=ASS1P6;ID=exon:HG003_chrY_T0001172:0;Name=ASS1P6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	12818443	12848662	.	+	.	source_gene_common_name=MXRA5Y;source_gene=ENSG00000235649.2;alternative_source_transcripts=ENST00000420610.1,ENST00000420610.1;gene_id=HG003_chrY_G0000390;gene_biotype=unprocessed_pseudogene;gene_name=MXRA5Y;gene_sources=liftoff;ID=HG003_chrY_G0000390;Name=MXRA5Y
HG003_chrY	CAT	transcript	12818443	12848662	1000	+	.	source_transcript=ENST00000420610.1;source_transcript_name=MXRA5Y-201;source_gene=ENSG00000235649.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235649.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420610.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420610.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MXRA5Y;alternative_source_transcripts=ENST00000420610.1,ENST00000420610.1;transcript_id=HG003_chrY_T0001173;gene_id=HG003_chrY_G0000390;Parent=HG003_chrY_G0000390;transcript_name=HG003_chrY_T0001173;gene_name=MXRA5Y;ID=HG003_chrY_T0001173;Name=MXRA5Y
HG003_chrY	CAT	exon	12818443	12818634	.	+	.	source_transcript=ENST00000420610.1;source_transcript_name=MXRA5Y-201;source_gene=ENSG00000235649.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235649.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420610.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420610.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MXRA5Y;alternative_source_transcripts=ENST00000420610.1,ENST00000420610.1;transcript_id=HG003_chrY_T0001173;gene_id=HG003_chrY_G0000390;Parent=HG003_chrY_T0001173;transcript_name=HG003_chrY_T0001173;gene_name=MXRA5Y;ID=exon:HG003_chrY_T0001173:0;Name=MXRA5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	12818635	12829318	.	+	.	source_transcript=ENST00000420610.1;source_transcript_name=MXRA5Y-201;source_gene=ENSG00000235649.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235649.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420610.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420610.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MXRA5Y;alternative_source_transcripts=ENST00000420610.1,ENST00000420610.1;transcript_id=HG003_chrY_T0001173;gene_id=HG003_chrY_G0000390;Parent=HG003_chrY_T0001173;transcript_name=HG003_chrY_T0001173;gene_name=MXRA5Y;ID=intron:HG003_chrY_T0001173:0;Name=MXRA5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	12829319	12834276	.	+	.	source_transcript=ENST00000420610.1;source_transcript_name=MXRA5Y-201;source_gene=ENSG00000235649.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235649.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420610.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420610.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MXRA5Y;alternative_source_transcripts=ENST00000420610.1,ENST00000420610.1;transcript_id=HG003_chrY_T0001173;gene_id=HG003_chrY_G0000390;Parent=HG003_chrY_T0001173;transcript_name=HG003_chrY_T0001173;gene_name=MXRA5Y;ID=exon:HG003_chrY_T0001173:1;Name=MXRA5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	12834277	12840150	.	+	.	source_transcript=ENST00000420610.1;source_transcript_name=MXRA5Y-201;source_gene=ENSG00000235649.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235649.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420610.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420610.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MXRA5Y;alternative_source_transcripts=ENST00000420610.1,ENST00000420610.1;transcript_id=HG003_chrY_T0001173;gene_id=HG003_chrY_G0000390;Parent=HG003_chrY_T0001173;transcript_name=HG003_chrY_T0001173;gene_name=MXRA5Y;ID=intron:HG003_chrY_T0001173:1;Name=MXRA5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	12840151	12841136	.	+	.	source_transcript=ENST00000420610.1;source_transcript_name=MXRA5Y-201;source_gene=ENSG00000235649.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235649.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420610.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420610.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MXRA5Y;alternative_source_transcripts=ENST00000420610.1,ENST00000420610.1;transcript_id=HG003_chrY_T0001173;gene_id=HG003_chrY_G0000390;Parent=HG003_chrY_T0001173;transcript_name=HG003_chrY_T0001173;gene_name=MXRA5Y;ID=exon:HG003_chrY_T0001173:2;Name=MXRA5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	12841137	12846756	.	+	.	source_transcript=ENST00000420610.1;source_transcript_name=MXRA5Y-201;source_gene=ENSG00000235649.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235649.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420610.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420610.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MXRA5Y;alternative_source_transcripts=ENST00000420610.1,ENST00000420610.1;transcript_id=HG003_chrY_T0001173;gene_id=HG003_chrY_G0000390;Parent=HG003_chrY_T0001173;transcript_name=HG003_chrY_T0001173;gene_name=MXRA5Y;ID=intron:HG003_chrY_T0001173:2;Name=MXRA5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	12846757	12848662	.	+	.	source_transcript=ENST00000420610.1;source_transcript_name=MXRA5Y-201;source_gene=ENSG00000235649.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235649.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420610.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420610.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MXRA5Y;alternative_source_transcripts=ENST00000420610.1,ENST00000420610.1;transcript_id=HG003_chrY_T0001173;gene_id=HG003_chrY_G0000390;Parent=HG003_chrY_T0001173;transcript_name=HG003_chrY_T0001173;gene_name=MXRA5Y;ID=exon:HG003_chrY_T0001173:3;Name=MXRA5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	12949789	13293709	.	-	.	source_gene_common_name=ENSG00000291034;source_gene=ENSG00000291034.2;gene_id=HG003_chrY_G0000391;gene_biotype=lncRNA;gene_name=ENSG00000291034;gene_sources=liftoff;ID=HG003_chrY_G0000391;Name=ENSG00000291034
HG003_chrY	CAT	transcript	12949789	13283342	1000	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=HG003_chrY_T0001174;Name=ENSG00000291034
HG003_chrY	CAT	exon	12949789	12951064	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001174:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	12951065	12972624	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001174:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	12972625	12972725	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001174:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	12972726	12976978	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001174:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	12976979	12977092	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001174:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	12977093	13064769	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001174:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13064770	13064894	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001174:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13064895	13071938	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001174:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13071939	13072037	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001174:4;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13072038	13103145	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001174:4;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13103146	13103183	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001174:5;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13103184	13268347	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001174:5;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268348	13268464	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001174:6;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268465	13268759	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001174:6;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001174:7;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001174:7;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001174:8;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283290	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001174:8;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283291	13283342	.	-	.	source_transcript=ENST00000651802.1;source_transcript_name=ENST00000651802;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651802.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651802.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001174;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001174;transcript_name=HG003_chrY_T0001174;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001174:9;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13067490	13283551	1000	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=HG003_chrY_T0001175;Name=ENSG00000291034
HG003_chrY	CAT	exon	13067490	13068357	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001175:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13068358	13103145	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001175:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13103146	13103183	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001175:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13103184	13115760	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001175:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13115761	13115882	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001175:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13115883	13119656	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001175:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13119657	13119806	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001175:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13119807	13268759	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001175:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001175:4;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001175:4;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001175:5;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283513	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001175:5;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283514	13283551	.	-	.	source_transcript=ENST00000651835.1;source_transcript_name=ENST00000651835;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651835.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651835.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001175;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001175;transcript_name=HG003_chrY_T0001175;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001175:6;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13188160	13283562	1000	-	.	source_transcript=ENST00000700898.2;source_transcript_name=ENST00000700898;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700898.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700898.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001180;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001180;gene_name=ENSG00000291034;ID=HG003_chrY_T0001180;Name=ENSG00000291034
HG003_chrY	CAT	exon	13188160	13188443	.	-	.	source_transcript=ENST00000700898.2;source_transcript_name=ENST00000700898;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700898.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700898.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001180;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001180;transcript_name=HG003_chrY_T0001180;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001180:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13188444	13268759	.	-	.	source_transcript=ENST00000700898.2;source_transcript_name=ENST00000700898;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700898.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700898.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001180;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001180;transcript_name=HG003_chrY_T0001180;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001180:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000700898.2;source_transcript_name=ENST00000700898;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700898.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700898.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001180;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001180;transcript_name=HG003_chrY_T0001180;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001180:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000700898.2;source_transcript_name=ENST00000700898;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700898.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700898.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001180;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001180;transcript_name=HG003_chrY_T0001180;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001180:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000700898.2;source_transcript_name=ENST00000700898;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700898.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700898.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001180;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001180;transcript_name=HG003_chrY_T0001180;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001180:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283513	.	-	.	source_transcript=ENST00000700898.2;source_transcript_name=ENST00000700898;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700898.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700898.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001180;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001180;transcript_name=HG003_chrY_T0001180;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001180:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283514	13283562	.	-	.	source_transcript=ENST00000700898.2;source_transcript_name=ENST00000700898;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700898.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700898.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001180;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001180;transcript_name=HG003_chrY_T0001180;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001180:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13188160	13283528	1000	-	.	source_transcript=ENST00000737326.1;source_transcript_name=ENST00000737326;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737326.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001181;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001181;gene_name=ENSG00000291034;ID=HG003_chrY_T0001181;Name=ENSG00000291034
HG003_chrY	CAT	exon	13188160	13188443	.	-	.	source_transcript=ENST00000737326.1;source_transcript_name=ENST00000737326;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737326.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001181;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001181;transcript_name=HG003_chrY_T0001181;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001181:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13188444	13268759	.	-	.	source_transcript=ENST00000737326.1;source_transcript_name=ENST00000737326;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737326.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001181;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001181;transcript_name=HG003_chrY_T0001181;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001181:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737326.1;source_transcript_name=ENST00000737326;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737326.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001181;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001181;transcript_name=HG003_chrY_T0001181;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001181:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737326.1;source_transcript_name=ENST00000737326;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737326.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001181;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001181;transcript_name=HG003_chrY_T0001181;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001181:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737326.1;source_transcript_name=ENST00000737326;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737326.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001181;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001181;transcript_name=HG003_chrY_T0001181;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001181:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283403	.	-	.	source_transcript=ENST00000737326.1;source_transcript_name=ENST00000737326;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737326.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001181;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001181;transcript_name=HG003_chrY_T0001181;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001181:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283404	13283528	.	-	.	source_transcript=ENST00000737326.1;source_transcript_name=ENST00000737326;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737326.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001181;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001181;transcript_name=HG003_chrY_T0001181;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001181:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13188162	13283514	1000	-	.	source_transcript=ENST00000737327.1;source_transcript_name=ENST00000737327;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737327.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001182;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001182;gene_name=ENSG00000291034;ID=HG003_chrY_T0001182;Name=ENSG00000291034
HG003_chrY	CAT	exon	13188162	13188443	.	-	.	source_transcript=ENST00000737327.1;source_transcript_name=ENST00000737327;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001182;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001182;transcript_name=HG003_chrY_T0001182;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001182:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13188444	13268347	.	-	.	source_transcript=ENST00000737327.1;source_transcript_name=ENST00000737327;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001182;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001182;transcript_name=HG003_chrY_T0001182;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001182:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268348	13268464	.	-	.	source_transcript=ENST00000737327.1;source_transcript_name=ENST00000737327;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001182;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001182;transcript_name=HG003_chrY_T0001182;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001182:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268465	13268759	.	-	.	source_transcript=ENST00000737327.1;source_transcript_name=ENST00000737327;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001182;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001182;transcript_name=HG003_chrY_T0001182;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001182:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737327.1;source_transcript_name=ENST00000737327;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001182;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001182;transcript_name=HG003_chrY_T0001182;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001182:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737327.1;source_transcript_name=ENST00000737327;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001182;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001182;transcript_name=HG003_chrY_T0001182;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001182:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737327.1;source_transcript_name=ENST00000737327;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001182;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001182;transcript_name=HG003_chrY_T0001182;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001182:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283403	.	-	.	source_transcript=ENST00000737327.1;source_transcript_name=ENST00000737327;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001182;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001182;transcript_name=HG003_chrY_T0001182;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001182:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283404	13283514	.	-	.	source_transcript=ENST00000737327.1;source_transcript_name=ENST00000737327;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001182;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001182;transcript_name=HG003_chrY_T0001182;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001182:4;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13201514	13283548	1000	-	.	source_transcript=ENST00000737328.1;source_transcript_name=ENST00000737328;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737328.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001186;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001186;gene_name=ENSG00000291034;ID=HG003_chrY_T0001186;Name=ENSG00000291034
HG003_chrY	CAT	exon	13201514	13201721	.	-	.	source_transcript=ENST00000737328.1;source_transcript_name=ENST00000737328;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001186;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001186;transcript_name=HG003_chrY_T0001186;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001186:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13201722	13268759	.	-	.	source_transcript=ENST00000737328.1;source_transcript_name=ENST00000737328;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001186;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001186;transcript_name=HG003_chrY_T0001186;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001186:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737328.1;source_transcript_name=ENST00000737328;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001186;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001186;transcript_name=HG003_chrY_T0001186;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001186:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737328.1;source_transcript_name=ENST00000737328;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001186;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001186;transcript_name=HG003_chrY_T0001186;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001186:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737328.1;source_transcript_name=ENST00000737328;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001186;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001186;transcript_name=HG003_chrY_T0001186;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001186:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283513	.	-	.	source_transcript=ENST00000737328.1;source_transcript_name=ENST00000737328;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001186;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001186;transcript_name=HG003_chrY_T0001186;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001186:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283514	13283548	.	-	.	source_transcript=ENST00000737328.1;source_transcript_name=ENST00000737328;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001186;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001186;transcript_name=HG003_chrY_T0001186;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001186:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13216183	13283548	1000	-	.	source_transcript=ENST00000700901.1;source_transcript_name=ENST00000700901;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700901.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001190;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001190;gene_name=ENSG00000291034;ID=HG003_chrY_T0001190;Name=ENSG00000291034
HG003_chrY	CAT	exon	13216183	13216542	.	-	.	source_transcript=ENST00000700901.1;source_transcript_name=ENST00000700901;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700901.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001190;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001190;transcript_name=HG003_chrY_T0001190;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001190:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13216543	13268759	.	-	.	source_transcript=ENST00000700901.1;source_transcript_name=ENST00000700901;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700901.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001190;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001190;transcript_name=HG003_chrY_T0001190;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001190:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000700901.1;source_transcript_name=ENST00000700901;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700901.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001190;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001190;transcript_name=HG003_chrY_T0001190;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001190:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000700901.1;source_transcript_name=ENST00000700901;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700901.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001190;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001190;transcript_name=HG003_chrY_T0001190;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001190:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000700901.1;source_transcript_name=ENST00000700901;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700901.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001190;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001190;transcript_name=HG003_chrY_T0001190;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001190:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283513	.	-	.	source_transcript=ENST00000700901.1;source_transcript_name=ENST00000700901;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700901.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001190;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001190;transcript_name=HG003_chrY_T0001190;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001190:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283514	13283548	.	-	.	source_transcript=ENST00000700901.1;source_transcript_name=ENST00000700901;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700901.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001190;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001190;transcript_name=HG003_chrY_T0001190;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001190:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13216187	13282420	1000	-	.	source_transcript=ENST00000382966.5;source_transcript_name=ENST00000382966;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382966.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382966.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001191;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001191;gene_name=ENSG00000291034;ID=HG003_chrY_T0001191;Name=ENSG00000291034
HG003_chrY	CAT	exon	13216187	13216542	.	-	.	source_transcript=ENST00000382966.5;source_transcript_name=ENST00000382966;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382966.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382966.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001191;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001191;transcript_name=HG003_chrY_T0001191;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001191:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13216543	13268759	.	-	.	source_transcript=ENST00000382966.5;source_transcript_name=ENST00000382966;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382966.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382966.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001191;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001191;transcript_name=HG003_chrY_T0001191;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001191:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000382966.5;source_transcript_name=ENST00000382966;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382966.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382966.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001191;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001191;transcript_name=HG003_chrY_T0001191;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001191:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000382966.5;source_transcript_name=ENST00000382966;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382966.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382966.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001191;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001191;transcript_name=HG003_chrY_T0001191;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001191:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282420	.	-	.	source_transcript=ENST00000382966.5;source_transcript_name=ENST00000382966;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382966.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382966.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001191;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001191;transcript_name=HG003_chrY_T0001191;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001191:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13240491	13283586	1000	-	.	source_transcript=ENST00000700889.2;source_transcript_name=ENST00000700889;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700889.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700889.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001192;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001192;gene_name=ENSG00000291034;ID=HG003_chrY_T0001192;Name=ENSG00000291034
HG003_chrY	CAT	exon	13240491	13240719	.	-	.	source_transcript=ENST00000700889.2;source_transcript_name=ENST00000700889;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700889.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700889.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001192;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001192;transcript_name=HG003_chrY_T0001192;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001192:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13240720	13268759	.	-	.	source_transcript=ENST00000700889.2;source_transcript_name=ENST00000700889;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700889.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700889.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001192;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001192;transcript_name=HG003_chrY_T0001192;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001192:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000700889.2;source_transcript_name=ENST00000700889;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700889.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700889.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001192;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001192;transcript_name=HG003_chrY_T0001192;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001192:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000700889.2;source_transcript_name=ENST00000700889;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700889.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700889.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001192;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001192;transcript_name=HG003_chrY_T0001192;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001192:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000700889.2;source_transcript_name=ENST00000700889;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700889.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700889.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001192;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001192;transcript_name=HG003_chrY_T0001192;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001192:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283513	.	-	.	source_transcript=ENST00000700889.2;source_transcript_name=ENST00000700889;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700889.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700889.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001192;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001192;transcript_name=HG003_chrY_T0001192;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001192:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283514	13283586	.	-	.	source_transcript=ENST00000700889.2;source_transcript_name=ENST00000700889;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700889.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000700889.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001192;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001192;transcript_name=HG003_chrY_T0001192;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001192:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13240491	13283526	1000	-	.	source_transcript=ENST00000737332.1;source_transcript_name=ENST00000737332;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737332.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001193;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001193;gene_name=ENSG00000291034;ID=HG003_chrY_T0001193;Name=ENSG00000291034
HG003_chrY	CAT	exon	13240491	13240719	.	-	.	source_transcript=ENST00000737332.1;source_transcript_name=ENST00000737332;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001193;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001193;transcript_name=HG003_chrY_T0001193;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001193:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13240720	13244148	.	-	.	source_transcript=ENST00000737332.1;source_transcript_name=ENST00000737332;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001193;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001193;transcript_name=HG003_chrY_T0001193;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001193:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13244149	13244297	.	-	.	source_transcript=ENST00000737332.1;source_transcript_name=ENST00000737332;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001193;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001193;transcript_name=HG003_chrY_T0001193;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001193:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13244298	13268759	.	-	.	source_transcript=ENST00000737332.1;source_transcript_name=ENST00000737332;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001193;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001193;transcript_name=HG003_chrY_T0001193;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001193:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737332.1;source_transcript_name=ENST00000737332;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001193;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001193;transcript_name=HG003_chrY_T0001193;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001193:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737332.1;source_transcript_name=ENST00000737332;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001193;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001193;transcript_name=HG003_chrY_T0001193;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001193:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737332.1;source_transcript_name=ENST00000737332;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001193;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001193;transcript_name=HG003_chrY_T0001193;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001193:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283403	.	-	.	source_transcript=ENST00000737332.1;source_transcript_name=ENST00000737332;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001193;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001193;transcript_name=HG003_chrY_T0001193;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001193:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283404	13283526	.	-	.	source_transcript=ENST00000737332.1;source_transcript_name=ENST00000737332;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001193;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001193;transcript_name=HG003_chrY_T0001193;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001193:4;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13240491	13283293	1000	-	.	source_transcript=ENST00000737333.1;source_transcript_name=ENST00000737333;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737333.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001194;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001194;gene_name=ENSG00000291034;ID=HG003_chrY_T0001194;Name=ENSG00000291034
HG003_chrY	CAT	exon	13240491	13240719	.	-	.	source_transcript=ENST00000737333.1;source_transcript_name=ENST00000737333;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001194;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001194;transcript_name=HG003_chrY_T0001194;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001194:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13240720	13268759	.	-	.	source_transcript=ENST00000737333.1;source_transcript_name=ENST00000737333;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001194;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001194;transcript_name=HG003_chrY_T0001194;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001194:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737333.1;source_transcript_name=ENST00000737333;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001194;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001194;transcript_name=HG003_chrY_T0001194;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001194:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737333.1;source_transcript_name=ENST00000737333;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001194;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001194;transcript_name=HG003_chrY_T0001194;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001194:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737333.1;source_transcript_name=ENST00000737333;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001194;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001194;transcript_name=HG003_chrY_T0001194;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001194:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283174	.	-	.	source_transcript=ENST00000737333.1;source_transcript_name=ENST00000737333;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001194;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001194;transcript_name=HG003_chrY_T0001194;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001194:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283175	13283293	.	-	.	source_transcript=ENST00000737333.1;source_transcript_name=ENST00000737333;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001194;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001194;transcript_name=HG003_chrY_T0001194;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001194:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13240491	13283523	1000	-	.	source_transcript=ENST00000689264.2;source_transcript_name=ENST00000689264;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000689264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000689264.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001195;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001195;gene_name=ENSG00000291034;ID=HG003_chrY_T0001195;Name=ENSG00000291034
HG003_chrY	CAT	exon	13240491	13240719	.	-	.	source_transcript=ENST00000689264.2;source_transcript_name=ENST00000689264;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000689264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000689264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001195;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001195;transcript_name=HG003_chrY_T0001195;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001195:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13240720	13268759	.	-	.	source_transcript=ENST00000689264.2;source_transcript_name=ENST00000689264;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000689264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000689264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001195;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001195;transcript_name=HG003_chrY_T0001195;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001195:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000689264.2;source_transcript_name=ENST00000689264;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000689264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000689264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001195;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001195;transcript_name=HG003_chrY_T0001195;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001195:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000689264.2;source_transcript_name=ENST00000689264;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000689264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000689264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001195;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001195;transcript_name=HG003_chrY_T0001195;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001195:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000689264.2;source_transcript_name=ENST00000689264;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000689264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000689264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001195;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001195;transcript_name=HG003_chrY_T0001195;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001195:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283403	.	-	.	source_transcript=ENST00000689264.2;source_transcript_name=ENST00000689264;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000689264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000689264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001195;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001195;transcript_name=HG003_chrY_T0001195;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001195:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283404	13283523	.	-	.	source_transcript=ENST00000689264.2;source_transcript_name=ENST00000689264;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000689264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000689264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001195;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001195;transcript_name=HG003_chrY_T0001195;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001195:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13240502	13283595	1000	-	.	source_transcript=ENST00000737330.1;source_transcript_name=ENST00000737330;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737330.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001196;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001196;gene_name=ENSG00000291034;ID=HG003_chrY_T0001196;Name=ENSG00000291034
HG003_chrY	CAT	exon	13240502	13240719	.	-	.	source_transcript=ENST00000737330.1;source_transcript_name=ENST00000737330;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001196;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001196;transcript_name=HG003_chrY_T0001196;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001196:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13240720	13244148	.	-	.	source_transcript=ENST00000737330.1;source_transcript_name=ENST00000737330;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001196;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001196;transcript_name=HG003_chrY_T0001196;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001196:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13244149	13244297	.	-	.	source_transcript=ENST00000737330.1;source_transcript_name=ENST00000737330;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001196;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001196;transcript_name=HG003_chrY_T0001196;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001196:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13244298	13268759	.	-	.	source_transcript=ENST00000737330.1;source_transcript_name=ENST00000737330;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001196;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001196;transcript_name=HG003_chrY_T0001196;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001196:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737330.1;source_transcript_name=ENST00000737330;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001196;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001196;transcript_name=HG003_chrY_T0001196;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001196:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737330.1;source_transcript_name=ENST00000737330;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001196;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001196;transcript_name=HG003_chrY_T0001196;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001196:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737330.1;source_transcript_name=ENST00000737330;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001196;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001196;transcript_name=HG003_chrY_T0001196;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001196:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283513	.	-	.	source_transcript=ENST00000737330.1;source_transcript_name=ENST00000737330;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001196;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001196;transcript_name=HG003_chrY_T0001196;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001196:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283514	13283595	.	-	.	source_transcript=ENST00000737330.1;source_transcript_name=ENST00000737330;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001196;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001196;transcript_name=HG003_chrY_T0001196;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001196:4;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13240504	13283541	1000	-	.	source_transcript=ENST00000737331.1;source_transcript_name=ENST00000737331;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737331.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001197;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001197;gene_name=ENSG00000291034;ID=HG003_chrY_T0001197;Name=ENSG00000291034
HG003_chrY	CAT	exon	13240504	13240719	.	-	.	source_transcript=ENST00000737331.1;source_transcript_name=ENST00000737331;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001197;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001197;transcript_name=HG003_chrY_T0001197;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001197:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13240720	13260651	.	-	.	source_transcript=ENST00000737331.1;source_transcript_name=ENST00000737331;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001197;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001197;transcript_name=HG003_chrY_T0001197;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001197:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13260652	13260789	.	-	.	source_transcript=ENST00000737331.1;source_transcript_name=ENST00000737331;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001197;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001197;transcript_name=HG003_chrY_T0001197;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001197:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13260790	13268759	.	-	.	source_transcript=ENST00000737331.1;source_transcript_name=ENST00000737331;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001197;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001197;transcript_name=HG003_chrY_T0001197;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001197:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737331.1;source_transcript_name=ENST00000737331;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001197;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001197;transcript_name=HG003_chrY_T0001197;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001197:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737331.1;source_transcript_name=ENST00000737331;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001197;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001197;transcript_name=HG003_chrY_T0001197;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001197:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737331.1;source_transcript_name=ENST00000737331;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001197;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001197;transcript_name=HG003_chrY_T0001197;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001197:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283513	.	-	.	source_transcript=ENST00000737331.1;source_transcript_name=ENST00000737331;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001197;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001197;transcript_name=HG003_chrY_T0001197;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001197:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283514	13283541	.	-	.	source_transcript=ENST00000737331.1;source_transcript_name=ENST00000737331;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001197;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001197;transcript_name=HG003_chrY_T0001197;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001197:4;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13240506	13282889	1000	-	.	source_transcript=ENST00000737335.1;source_transcript_name=ENST00000737335;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737335.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001198;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001198;gene_name=ENSG00000291034;ID=HG003_chrY_T0001198;Name=ENSG00000291034
HG003_chrY	CAT	exon	13240506	13240719	.	-	.	source_transcript=ENST00000737335.1;source_transcript_name=ENST00000737335;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001198;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001198;transcript_name=HG003_chrY_T0001198;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001198:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13240720	13268759	.	-	.	source_transcript=ENST00000737335.1;source_transcript_name=ENST00000737335;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001198;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001198;transcript_name=HG003_chrY_T0001198;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001198:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737335.1;source_transcript_name=ENST00000737335;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001198;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001198;transcript_name=HG003_chrY_T0001198;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001198:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737335.1;source_transcript_name=ENST00000737335;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001198;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001198;transcript_name=HG003_chrY_T0001198;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001198:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737335.1;source_transcript_name=ENST00000737335;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001198;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001198;transcript_name=HG003_chrY_T0001198;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001198:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13282856	.	-	.	source_transcript=ENST00000737335.1;source_transcript_name=ENST00000737335;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001198;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001198;transcript_name=HG003_chrY_T0001198;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001198:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282857	13282889	.	-	.	source_transcript=ENST00000737335.1;source_transcript_name=ENST00000737335;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001198;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001198;transcript_name=HG003_chrY_T0001198;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001198:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13240507	13282418	1000	-	.	source_transcript=ENST00000737336.1;source_transcript_name=ENST00000737336;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737336.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001199;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001199;gene_name=ENSG00000291034;ID=HG003_chrY_T0001199;Name=ENSG00000291034
HG003_chrY	CAT	exon	13240507	13240719	.	-	.	source_transcript=ENST00000737336.1;source_transcript_name=ENST00000737336;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001199;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001199;transcript_name=HG003_chrY_T0001199;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001199:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13240720	13244148	.	-	.	source_transcript=ENST00000737336.1;source_transcript_name=ENST00000737336;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001199;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001199;transcript_name=HG003_chrY_T0001199;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001199:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13244149	13244297	.	-	.	source_transcript=ENST00000737336.1;source_transcript_name=ENST00000737336;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001199;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001199;transcript_name=HG003_chrY_T0001199;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001199:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13244298	13268347	.	-	.	source_transcript=ENST00000737336.1;source_transcript_name=ENST00000737336;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001199;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001199;transcript_name=HG003_chrY_T0001199;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001199:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268348	13268464	.	-	.	source_transcript=ENST00000737336.1;source_transcript_name=ENST00000737336;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001199;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001199;transcript_name=HG003_chrY_T0001199;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001199:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268465	13268759	.	-	.	source_transcript=ENST00000737336.1;source_transcript_name=ENST00000737336;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001199;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001199;transcript_name=HG003_chrY_T0001199;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001199:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737336.1;source_transcript_name=ENST00000737336;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001199;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001199;transcript_name=HG003_chrY_T0001199;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001199:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737336.1;source_transcript_name=ENST00000737336;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001199;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001199;transcript_name=HG003_chrY_T0001199;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001199:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737336.1;source_transcript_name=ENST00000737336;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737336.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737336.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001199;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001199;transcript_name=HG003_chrY_T0001199;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001199:4;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13240507	13283087	1000	-	.	source_transcript=ENST00000737334.1;source_transcript_name=ENST00000737334;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737334.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001200;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001200;gene_name=ENSG00000291034;ID=HG003_chrY_T0001200;Name=ENSG00000291034
HG003_chrY	CAT	exon	13240507	13240719	.	-	.	source_transcript=ENST00000737334.1;source_transcript_name=ENST00000737334;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001200;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001200;transcript_name=HG003_chrY_T0001200;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001200:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13240720	13268759	.	-	.	source_transcript=ENST00000737334.1;source_transcript_name=ENST00000737334;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001200;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001200;transcript_name=HG003_chrY_T0001200;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001200:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737334.1;source_transcript_name=ENST00000737334;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001200;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001200;transcript_name=HG003_chrY_T0001200;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001200:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737334.1;source_transcript_name=ENST00000737334;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001200;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001200;transcript_name=HG003_chrY_T0001200;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001200:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737334.1;source_transcript_name=ENST00000737334;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001200;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001200;transcript_name=HG003_chrY_T0001200;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001200:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283031	.	-	.	source_transcript=ENST00000737334.1;source_transcript_name=ENST00000737334;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001200;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001200;transcript_name=HG003_chrY_T0001200;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001200:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283032	13283087	.	-	.	source_transcript=ENST00000737334.1;source_transcript_name=ENST00000737334;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001200;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001200;transcript_name=HG003_chrY_T0001200;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001200:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13241161	13293632	1000	-	.	source_transcript=ENST00000737329.1;source_transcript_name=ENST00000737329;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737329.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001201;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001201;gene_name=ENSG00000291034;ID=HG003_chrY_T0001201;Name=ENSG00000291034
HG003_chrY	CAT	exon	13241161	13241814	.	-	.	source_transcript=ENST00000737329.1;source_transcript_name=ENST00000737329;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001201;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001201;transcript_name=HG003_chrY_T0001201;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001201:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13241815	13268759	.	-	.	source_transcript=ENST00000737329.1;source_transcript_name=ENST00000737329;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001201;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001201;transcript_name=HG003_chrY_T0001201;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001201:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737329.1;source_transcript_name=ENST00000737329;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001201;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001201;transcript_name=HG003_chrY_T0001201;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001201:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13269156	.	-	.	source_transcript=ENST00000737329.1;source_transcript_name=ENST00000737329;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001201;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001201;transcript_name=HG003_chrY_T0001201;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001201:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13269157	13269273	.	-	.	source_transcript=ENST00000737329.1;source_transcript_name=ENST00000737329;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001201;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001201;transcript_name=HG003_chrY_T0001201;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001201:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13269274	13293604	.	-	.	source_transcript=ENST00000737329.1;source_transcript_name=ENST00000737329;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001201;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001201;transcript_name=HG003_chrY_T0001201;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001201:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13293605	13293632	.	-	.	source_transcript=ENST00000737329.1;source_transcript_name=ENST00000737329;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001201;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001201;transcript_name=HG003_chrY_T0001201;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001201:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13245159	13280258	1000	-	.	source_transcript=ENST00000493160.5;source_transcript_name=ENST00000493160;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000493160.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000493160.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001202;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001202;gene_name=ENSG00000291034;ID=HG003_chrY_T0001202;Name=ENSG00000291034
HG003_chrY	CAT	exon	13245159	13245300	.	-	.	source_transcript=ENST00000493160.5;source_transcript_name=ENST00000493160;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000493160.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000493160.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001202;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001202;transcript_name=HG003_chrY_T0001202;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001202:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13245301	13260651	.	-	.	source_transcript=ENST00000493160.5;source_transcript_name=ENST00000493160;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000493160.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000493160.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001202;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001202;transcript_name=HG003_chrY_T0001202;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001202:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13260652	13260789	.	-	.	source_transcript=ENST00000493160.5;source_transcript_name=ENST00000493160;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000493160.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000493160.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001202;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001202;transcript_name=HG003_chrY_T0001202;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001202:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13260790	13268759	.	-	.	source_transcript=ENST00000493160.5;source_transcript_name=ENST00000493160;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000493160.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000493160.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001202;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001202;transcript_name=HG003_chrY_T0001202;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001202:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000493160.5;source_transcript_name=ENST00000493160;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000493160.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000493160.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001202;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001202;transcript_name=HG003_chrY_T0001202;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001202:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13269156	.	-	.	source_transcript=ENST00000493160.5;source_transcript_name=ENST00000493160;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000493160.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000493160.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001202;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001202;transcript_name=HG003_chrY_T0001202;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001202:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13269157	13269273	.	-	.	source_transcript=ENST00000493160.5;source_transcript_name=ENST00000493160;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000493160.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000493160.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001202;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001202;transcript_name=HG003_chrY_T0001202;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001202:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13269274	13279853	.	-	.	source_transcript=ENST00000493160.5;source_transcript_name=ENST00000493160;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000493160.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000493160.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001202;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001202;transcript_name=HG003_chrY_T0001202;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001202:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13279854	13280258	.	-	.	source_transcript=ENST00000493160.5;source_transcript_name=ENST00000493160;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000493160.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000493160.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001202;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001202;transcript_name=HG003_chrY_T0001202;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001202:4;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13263960	13283548	1000	-	.	source_transcript=ENST00000737337.1;source_transcript_name=ENST00000737337;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737337.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001203;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001203;gene_name=ENSG00000291034;ID=HG003_chrY_T0001203;Name=ENSG00000291034
HG003_chrY	CAT	exon	13263960	13264562	.	-	.	source_transcript=ENST00000737337.1;source_transcript_name=ENST00000737337;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001203;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001203;transcript_name=HG003_chrY_T0001203;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001203:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13264563	13268759	.	-	.	source_transcript=ENST00000737337.1;source_transcript_name=ENST00000737337;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001203;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001203;transcript_name=HG003_chrY_T0001203;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001203:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737337.1;source_transcript_name=ENST00000737337;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001203;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001203;transcript_name=HG003_chrY_T0001203;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001203:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737337.1;source_transcript_name=ENST00000737337;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001203;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001203;transcript_name=HG003_chrY_T0001203;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001203:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737337.1;source_transcript_name=ENST00000737337;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001203;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001203;transcript_name=HG003_chrY_T0001203;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001203:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283513	.	-	.	source_transcript=ENST00000737337.1;source_transcript_name=ENST00000737337;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001203;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001203;transcript_name=HG003_chrY_T0001203;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001203:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283514	13283548	.	-	.	source_transcript=ENST00000737337.1;source_transcript_name=ENST00000737337;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737337.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737337.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001203;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001203;transcript_name=HG003_chrY_T0001203;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001203:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13263963	13283218	1000	-	.	source_transcript=ENST00000737338.1;source_transcript_name=ENST00000737338;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737338.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737338.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001204;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001204;gene_name=ENSG00000291034;ID=HG003_chrY_T0001204;Name=ENSG00000291034
HG003_chrY	CAT	exon	13263963	13264562	.	-	.	source_transcript=ENST00000737338.1;source_transcript_name=ENST00000737338;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737338.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737338.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001204;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001204;transcript_name=HG003_chrY_T0001204;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001204:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13264563	13268759	.	-	.	source_transcript=ENST00000737338.1;source_transcript_name=ENST00000737338;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737338.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737338.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001204;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001204;transcript_name=HG003_chrY_T0001204;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001204:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737338.1;source_transcript_name=ENST00000737338;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737338.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737338.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001204;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001204;transcript_name=HG003_chrY_T0001204;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001204:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737338.1;source_transcript_name=ENST00000737338;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737338.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737338.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001204;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001204;transcript_name=HG003_chrY_T0001204;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001204:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737338.1;source_transcript_name=ENST00000737338;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737338.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737338.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001204;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001204;transcript_name=HG003_chrY_T0001204;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001204:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283174	.	-	.	source_transcript=ENST00000737338.1;source_transcript_name=ENST00000737338;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737338.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737338.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001204;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001204;transcript_name=HG003_chrY_T0001204;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001204:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283175	13283218	.	-	.	source_transcript=ENST00000737338.1;source_transcript_name=ENST00000737338;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737338.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737338.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001204;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001204;transcript_name=HG003_chrY_T0001204;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001204:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13264223	13282420	1000	-	.	source_transcript=ENST00000357871.6;source_transcript_name=ENST00000357871;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000357871.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000357871.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001205;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001205;gene_name=ENSG00000291034;ID=HG003_chrY_T0001205;Name=ENSG00000291034
HG003_chrY	CAT	exon	13264223	13264562	.	-	.	source_transcript=ENST00000357871.6;source_transcript_name=ENST00000357871;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000357871.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000357871.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001205;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001205;transcript_name=HG003_chrY_T0001205;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001205:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13264563	13268759	.	-	.	source_transcript=ENST00000357871.6;source_transcript_name=ENST00000357871;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000357871.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000357871.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001205;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001205;transcript_name=HG003_chrY_T0001205;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001205:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000357871.6;source_transcript_name=ENST00000357871;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000357871.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000357871.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001205;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001205;transcript_name=HG003_chrY_T0001205;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001205:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000357871.6;source_transcript_name=ENST00000357871;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000357871.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000357871.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001205;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001205;transcript_name=HG003_chrY_T0001205;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001205:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282420	.	-	.	source_transcript=ENST00000357871.6;source_transcript_name=ENST00000357871;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000357871.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000357871.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001205;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001205;transcript_name=HG003_chrY_T0001205;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001205:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13268082	13283338	1000	-	.	source_transcript=ENST00000737339.1;source_transcript_name=ENST00000737339;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737339.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737339.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001206;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001206;gene_name=ENSG00000291034;ID=HG003_chrY_T0001206;Name=ENSG00000291034
HG003_chrY	CAT	exon	13268082	13268464	.	-	.	source_transcript=ENST00000737339.1;source_transcript_name=ENST00000737339;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737339.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737339.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001206;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001206;transcript_name=HG003_chrY_T0001206;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001206:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268465	13268759	.	-	.	source_transcript=ENST00000737339.1;source_transcript_name=ENST00000737339;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737339.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737339.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001206;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001206;transcript_name=HG003_chrY_T0001206;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001206:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000737339.1;source_transcript_name=ENST00000737339;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737339.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737339.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001206;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001206;transcript_name=HG003_chrY_T0001206;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001206:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000737339.1;source_transcript_name=ENST00000737339;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737339.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737339.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001206;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001206;transcript_name=HG003_chrY_T0001206;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001206:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282418	.	-	.	source_transcript=ENST00000737339.1;source_transcript_name=ENST00000737339;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737339.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737339.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001206;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001206;transcript_name=HG003_chrY_T0001206;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001206:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13282419	13283290	.	-	.	source_transcript=ENST00000737339.1;source_transcript_name=ENST00000737339;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737339.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737339.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001206;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001206;transcript_name=HG003_chrY_T0001206;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001206:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13283291	13283338	.	-	.	source_transcript=ENST00000737339.1;source_transcript_name=ENST00000737339;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737339.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737339.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001206;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001206;transcript_name=HG003_chrY_T0001206;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001206:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13268087	13282336	1000	-	.	source_transcript=ENST00000382963.5;source_transcript_name=ENST00000382963;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382963.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382963.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001207;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001207;gene_name=ENSG00000291034;ID=HG003_chrY_T0001207;Name=ENSG00000291034
HG003_chrY	CAT	exon	13268087	13268464	.	-	.	source_transcript=ENST00000382963.5;source_transcript_name=ENST00000382963;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382963.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382963.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001207;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001207;transcript_name=HG003_chrY_T0001207;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001207:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268465	13268759	.	-	.	source_transcript=ENST00000382963.5;source_transcript_name=ENST00000382963;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382963.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382963.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001207;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001207;transcript_name=HG003_chrY_T0001207;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001207:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000382963.5;source_transcript_name=ENST00000382963;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382963.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382963.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001207;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001207;transcript_name=HG003_chrY_T0001207;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001207:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13269156	.	-	.	source_transcript=ENST00000382963.5;source_transcript_name=ENST00000382963;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382963.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382963.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001207;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001207;transcript_name=HG003_chrY_T0001207;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001207:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13269157	13269273	.	-	.	source_transcript=ENST00000382963.5;source_transcript_name=ENST00000382963;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382963.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382963.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001207;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001207;transcript_name=HG003_chrY_T0001207;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001207:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13269274	13282279	.	-	.	source_transcript=ENST00000382963.5;source_transcript_name=ENST00000382963;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382963.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382963.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001207;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001207;transcript_name=HG003_chrY_T0001207;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001207:2;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282336	.	-	.	source_transcript=ENST00000382963.5;source_transcript_name=ENST00000382963;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382963.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382963.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001207;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001207;transcript_name=HG003_chrY_T0001207;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001207:3;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13287378	13293709	1000	-	.	source_transcript=ENST00000737340.1;source_transcript_name=ENST00000737340;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737340.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737340.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001209;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_G0000391;transcript_name=HG003_chrY_T0001209;gene_name=ENSG00000291034;ID=HG003_chrY_T0001209;Name=ENSG00000291034
HG003_chrY	CAT	exon	13287378	13287784	.	-	.	source_transcript=ENST00000737340.1;source_transcript_name=ENST00000737340;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737340.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737340.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001209;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001209;transcript_name=HG003_chrY_T0001209;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001209:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13287785	13293604	.	-	.	source_transcript=ENST00000737340.1;source_transcript_name=ENST00000737340;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737340.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737340.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001209;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001209;transcript_name=HG003_chrY_T0001209;gene_name=ENSG00000291034;ID=intron:HG003_chrY_T0001209:0;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13293605	13293709	.	-	.	source_transcript=ENST00000737340.1;source_transcript_name=ENST00000737340;source_gene=ENSG00000291034.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291034.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737340.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737340.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000291034;transcript_id=HG003_chrY_T0001209;gene_id=HG003_chrY_G0000391;Parent=HG003_chrY_T0001209;transcript_name=HG003_chrY_T0001209;gene_name=ENSG00000291034;ID=exon:HG003_chrY_T0001209:1;Name=ENSG00000291034;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13106527	13107232	.	+	.	source_gene_common_name=RPS24P1;source_gene=ENSG00000236477.1;alternative_source_transcripts=ENST00000438550.1,ENST00000438550.1;gene_id=HG003_chrY_G0000392;gene_biotype=processed_pseudogene;gene_name=RPS24P1;gene_sources=liftoff;ID=HG003_chrY_G0000392;Name=RPS24P1
HG003_chrY	CAT	transcript	13106527	13107232	1000	+	.	source_transcript=ENST00000438550.1;source_transcript_name=RPS24P1-201;source_gene=ENSG00000236477.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000236477.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000438550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438550.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS24P1;alternative_source_transcripts=ENST00000438550.1,ENST00000438550.1;transcript_id=HG003_chrY_T0001176;gene_id=HG003_chrY_G0000392;Parent=HG003_chrY_G0000392;transcript_name=HG003_chrY_T0001176;gene_name=RPS24P1;ID=HG003_chrY_T0001176;Name=RPS24P1
HG003_chrY	CAT	exon	13106527	13106652	.	+	.	source_transcript=ENST00000438550.1;source_transcript_name=RPS24P1-201;source_gene=ENSG00000236477.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000236477.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000438550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438550.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS24P1;alternative_source_transcripts=ENST00000438550.1,ENST00000438550.1;transcript_id=HG003_chrY_T0001176;gene_id=HG003_chrY_G0000392;Parent=HG003_chrY_T0001176;transcript_name=HG003_chrY_T0001176;gene_name=RPS24P1;ID=exon:HG003_chrY_T0001176:0;Name=RPS24P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13106653	13106987	.	+	.	source_transcript=ENST00000438550.1;source_transcript_name=RPS24P1-201;source_gene=ENSG00000236477.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000236477.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000438550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438550.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS24P1;alternative_source_transcripts=ENST00000438550.1,ENST00000438550.1;transcript_id=HG003_chrY_T0001176;gene_id=HG003_chrY_G0000392;Parent=HG003_chrY_T0001176;transcript_name=HG003_chrY_T0001176;gene_name=RPS24P1;ID=intron:HG003_chrY_T0001176:0;Name=RPS24P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13106988	13107232	.	+	.	source_transcript=ENST00000438550.1;source_transcript_name=RPS24P1-201;source_gene=ENSG00000236477.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000236477.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000438550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438550.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS24P1;alternative_source_transcripts=ENST00000438550.1,ENST00000438550.1;transcript_id=HG003_chrY_T0001176;gene_id=HG003_chrY_G0000392;Parent=HG003_chrY_T0001176;transcript_name=HG003_chrY_T0001176;gene_name=RPS24P1;ID=exon:HG003_chrY_T0001176:1;Name=RPS24P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13114096	13119808	.	-	.	source_gene_common_name=ARSFP1;source_gene=ENSG00000232226.2;gene_id=HG003_chrY_G0000393;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ARSFP1;gene_sources=liftoff;ID=HG003_chrY_G0000393;Name=ARSFP1
HG003_chrY	CAT	transcript	13114096	13119808	1000	-	.	source_transcript=ENST00000398758.2;source_transcript_name=ARSFP1-201;source_gene=ENSG00000232226.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232226.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000398758.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000398758.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSFP1;transcript_id=HG003_chrY_T0001177;gene_id=HG003_chrY_G0000393;Parent=HG003_chrY_G0000393;transcript_name=HG003_chrY_T0001177;gene_name=ARSFP1;ID=HG003_chrY_T0001177;Name=ARSFP1
HG003_chrY	CAT	exon	13114096	13114293	.	-	.	source_transcript=ENST00000398758.2;source_transcript_name=ARSFP1-201;source_gene=ENSG00000232226.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232226.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000398758.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000398758.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSFP1;transcript_id=HG003_chrY_T0001177;gene_id=HG003_chrY_G0000393;Parent=HG003_chrY_T0001177;transcript_name=HG003_chrY_T0001177;gene_name=ARSFP1;ID=exon:HG003_chrY_T0001177:0;Name=ARSFP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13114294	13115755	.	-	.	source_transcript=ENST00000398758.2;source_transcript_name=ARSFP1-201;source_gene=ENSG00000232226.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232226.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000398758.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000398758.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSFP1;transcript_id=HG003_chrY_T0001177;gene_id=HG003_chrY_G0000393;Parent=HG003_chrY_T0001177;transcript_name=HG003_chrY_T0001177;gene_name=ARSFP1;ID=intron:HG003_chrY_T0001177:0;Name=ARSFP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13115756	13115882	.	-	.	source_transcript=ENST00000398758.2;source_transcript_name=ARSFP1-201;source_gene=ENSG00000232226.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232226.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000398758.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000398758.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSFP1;transcript_id=HG003_chrY_T0001177;gene_id=HG003_chrY_G0000393;Parent=HG003_chrY_T0001177;transcript_name=HG003_chrY_T0001177;gene_name=ARSFP1;ID=exon:HG003_chrY_T0001177:1;Name=ARSFP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13115883	13119656	.	-	.	source_transcript=ENST00000398758.2;source_transcript_name=ARSFP1-201;source_gene=ENSG00000232226.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232226.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000398758.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000398758.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSFP1;transcript_id=HG003_chrY_T0001177;gene_id=HG003_chrY_G0000393;Parent=HG003_chrY_T0001177;transcript_name=HG003_chrY_T0001177;gene_name=ARSFP1;ID=intron:HG003_chrY_T0001177:1;Name=ARSFP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13119657	13119808	.	-	.	source_transcript=ENST00000398758.2;source_transcript_name=ARSFP1-201;source_gene=ENSG00000232226.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232226.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000398758.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000398758.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSFP1;transcript_id=HG003_chrY_T0001177;gene_id=HG003_chrY_G0000393;Parent=HG003_chrY_T0001177;transcript_name=HG003_chrY_T0001177;gene_name=ARSFP1;ID=exon:HG003_chrY_T0001177:2;Name=ARSFP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13135240	13135531	.	+	.	source_gene_common_name=RN7SL702P;source_gene=ENSG00000243980.3;alternative_source_transcripts=ENST00000488394.3,ENST00000488394.3;gene_id=HG003_chrY_G0000394;gene_biotype=misc_RNA;gene_name=RN7SL702P;gene_sources=liftoff;ID=HG003_chrY_G0000394;Name=RN7SL702P
HG003_chrY	CAT	transcript	13135240	13135531	1000	+	.	source_transcript=ENST00000488394.3;source_transcript_name=RN7SL702P-201;source_gene=ENSG00000243980.3;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000243980.3;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000488394.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000488394.3;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RN7SL702P;alternative_source_transcripts=ENST00000488394.3,ENST00000488394.3;transcript_id=HG003_chrY_T0001178;gene_id=HG003_chrY_G0000394;Parent=HG003_chrY_G0000394;transcript_name=HG003_chrY_T0001178;gene_name=RN7SL702P;ID=HG003_chrY_T0001178;Name=RN7SL702P
HG003_chrY	CAT	exon	13135240	13135531	.	+	.	source_transcript=ENST00000488394.3;source_transcript_name=RN7SL702P-201;source_gene=ENSG00000243980.3;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000243980.3;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000488394.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000488394.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RN7SL702P;alternative_source_transcripts=ENST00000488394.3,ENST00000488394.3;transcript_id=HG003_chrY_T0001178;gene_id=HG003_chrY_G0000394;Parent=HG003_chrY_T0001178;transcript_name=HG003_chrY_T0001178;gene_name=RN7SL702P;ID=exon:HG003_chrY_T0001178:0;Name=RN7SL702P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13183400	13184612	.	+	.	source_gene_common_name=FAM8A4P;source_gene=ENSG00000232730.1;alternative_source_transcripts=ENST00000435433.1,ENST00000435433.1;gene_id=HG003_chrY_G0000395;gene_biotype=processed_pseudogene;gene_name=FAM8A4P;gene_sources=liftoff;ID=HG003_chrY_G0000395;Name=FAM8A4P
HG003_chrY	CAT	transcript	13183400	13184612	1000	+	.	source_transcript=ENST00000435433.1;source_transcript_name=FAM8A4P-201;source_gene=ENSG00000232730.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232730.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000435433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435433.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM8A4P;alternative_source_transcripts=ENST00000435433.1,ENST00000435433.1;transcript_id=HG003_chrY_T0001179;gene_id=HG003_chrY_G0000395;Parent=HG003_chrY_G0000395;transcript_name=HG003_chrY_T0001179;gene_name=FAM8A4P;ID=HG003_chrY_T0001179;Name=FAM8A4P
HG003_chrY	CAT	exon	13183400	13184612	.	+	.	source_transcript=ENST00000435433.1;source_transcript_name=FAM8A4P-201;source_gene=ENSG00000232730.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232730.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000435433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435433.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM8A4P;alternative_source_transcripts=ENST00000435433.1,ENST00000435433.1;transcript_id=HG003_chrY_T0001179;gene_id=HG003_chrY_G0000395;Parent=HG003_chrY_T0001179;transcript_name=HG003_chrY_T0001179;gene_name=FAM8A4P;ID=exon:HG003_chrY_T0001179:0;Name=FAM8A4P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13189419	13209453	.	+	.	source_gene_common_name=ENSG00000290435;source_gene=ENSG00000290435.2;gene_id=HG003_chrY_G0000396;gene_biotype=lncRNA;gene_name=ENSG00000290435;gene_sources=liftoff;ID=HG003_chrY_G0000396;Name=ENSG00000290435
HG003_chrY	CAT	transcript	13189419	13209286	1000	+	.	source_transcript=ENST00000737467.1;source_transcript_name=ENST00000737467;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737467.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001183;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_G0000396;transcript_name=HG003_chrY_T0001183;gene_name=ENSG00000290435;ID=HG003_chrY_T0001183;Name=ENSG00000290435
HG003_chrY	CAT	exon	13189419	13189820	.	+	.	source_transcript=ENST00000737467.1;source_transcript_name=ENST00000737467;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737467.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001183;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_T0001183;transcript_name=HG003_chrY_T0001183;gene_name=ENSG00000290435;ID=exon:HG003_chrY_T0001183:0;Name=ENSG00000290435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13189821	13208906	.	+	.	source_transcript=ENST00000737467.1;source_transcript_name=ENST00000737467;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737467.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001183;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_T0001183;transcript_name=HG003_chrY_T0001183;gene_name=ENSG00000290435;ID=intron:HG003_chrY_T0001183:0;Name=ENSG00000290435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13208907	13209286	.	+	.	source_transcript=ENST00000737467.1;source_transcript_name=ENST00000737467;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737467.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737467.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001183;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_T0001183;transcript_name=HG003_chrY_T0001183;gene_name=ENSG00000290435;ID=exon:HG003_chrY_T0001183:1;Name=ENSG00000290435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13189706	13201690	1000	+	.	source_transcript=ENST00000737469.1;source_transcript_name=ENST00000737469;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737469.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001184;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_G0000396;transcript_name=HG003_chrY_T0001184;gene_name=ENSG00000290435;ID=HG003_chrY_T0001184;Name=ENSG00000290435
HG003_chrY	CAT	exon	13189706	13189820	.	+	.	source_transcript=ENST00000737469.1;source_transcript_name=ENST00000737469;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737469.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001184;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_T0001184;transcript_name=HG003_chrY_T0001184;gene_name=ENSG00000290435;ID=exon:HG003_chrY_T0001184:0;Name=ENSG00000290435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13189821	13201587	.	+	.	source_transcript=ENST00000737469.1;source_transcript_name=ENST00000737469;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737469.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001184;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_T0001184;transcript_name=HG003_chrY_T0001184;gene_name=ENSG00000290435;ID=intron:HG003_chrY_T0001184:0;Name=ENSG00000290435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13201588	13201690	.	+	.	source_transcript=ENST00000737469.1;source_transcript_name=ENST00000737469;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737469.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737469.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001184;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_T0001184;transcript_name=HG003_chrY_T0001184;gene_name=ENSG00000290435;ID=exon:HG003_chrY_T0001184:1;Name=ENSG00000290435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13193850	13209453	1000	+	.	source_transcript=ENST00000737468.1;source_transcript_name=ENST00000737468;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737468.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001185;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_G0000396;transcript_name=HG003_chrY_T0001185;gene_name=ENSG00000290435;ID=HG003_chrY_T0001185;Name=ENSG00000290435
HG003_chrY	CAT	exon	13193850	13194069	.	+	.	source_transcript=ENST00000737468.1;source_transcript_name=ENST00000737468;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737468.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001185;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_T0001185;transcript_name=HG003_chrY_T0001185;gene_name=ENSG00000290435;ID=exon:HG003_chrY_T0001185:0;Name=ENSG00000290435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13194070	13208906	.	+	.	source_transcript=ENST00000737468.1;source_transcript_name=ENST00000737468;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737468.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001185;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_T0001185;transcript_name=HG003_chrY_T0001185;gene_name=ENSG00000290435;ID=intron:HG003_chrY_T0001185:0;Name=ENSG00000290435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13208907	13209453	.	+	.	source_transcript=ENST00000737468.1;source_transcript_name=ENST00000737468;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737468.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001185;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_T0001185;transcript_name=HG003_chrY_T0001185;gene_name=ENSG00000290435;ID=exon:HG003_chrY_T0001185:1;Name=ENSG00000290435;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13206852	13209266	1000	+	.	source_transcript=ENST00000430152.1;source_transcript_name=ENST00000430152;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000430152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430152.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001188;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_G0000396;transcript_name=HG003_chrY_T0001188;gene_name=ENSG00000290435;ID=HG003_chrY_T0001188;Name=ENSG00000290435
HG003_chrY	CAT	exon	13206852	13206990	.	+	.	source_transcript=ENST00000430152.1;source_transcript_name=ENST00000430152;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000430152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430152.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001188;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_T0001188;transcript_name=HG003_chrY_T0001188;gene_name=ENSG00000290435;ID=exon:HG003_chrY_T0001188:0;Name=ENSG00000290435;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13206991	13208906	.	+	.	source_transcript=ENST00000430152.1;source_transcript_name=ENST00000430152;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000430152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430152.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001188;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_T0001188;transcript_name=HG003_chrY_T0001188;gene_name=ENSG00000290435;ID=intron:HG003_chrY_T0001188:0;Name=ENSG00000290435;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13208907	13209266	.	+	.	source_transcript=ENST00000430152.1;source_transcript_name=ENST00000430152;source_gene=ENSG00000290435.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290435.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000430152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430152.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290435;transcript_id=HG003_chrY_T0001188;gene_id=HG003_chrY_G0000396;Parent=HG003_chrY_T0001188;transcript_name=HG003_chrY_T0001188;gene_name=ENSG00000290435;ID=exon:HG003_chrY_T0001188:1;Name=ENSG00000290435;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13201588	13209258	.	+	.	source_gene_common_name=ARSLP1;source_gene=ENSG00000224060.4;gene_id=HG003_chrY_G0000397;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ARSLP1;gene_sources=liftoff;ID=HG003_chrY_G0000397;Name=ARSLP1
HG003_chrY	CAT	transcript	13201588	13209258	1000	+	.	source_transcript=ENST00000420443.1;source_transcript_name=ARSLP1-201;source_gene=ENSG00000224060.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224060.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420443.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420443.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSLP1;transcript_id=HG003_chrY_T0001187;gene_id=HG003_chrY_G0000397;Parent=HG003_chrY_G0000397;transcript_name=HG003_chrY_T0001187;gene_name=ARSLP1;ID=HG003_chrY_T0001187;Name=ARSLP1
HG003_chrY	CAT	exon	13201588	13201750	.	+	.	source_transcript=ENST00000420443.1;source_transcript_name=ARSLP1-201;source_gene=ENSG00000224060.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224060.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420443.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420443.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSLP1;transcript_id=HG003_chrY_T0001187;gene_id=HG003_chrY_G0000397;Parent=HG003_chrY_T0001187;transcript_name=HG003_chrY_T0001187;gene_name=ARSLP1;ID=exon:HG003_chrY_T0001187:0;Name=ARSLP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13201751	13202950	.	+	.	source_transcript=ENST00000420443.1;source_transcript_name=ARSLP1-201;source_gene=ENSG00000224060.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224060.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420443.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420443.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSLP1;transcript_id=HG003_chrY_T0001187;gene_id=HG003_chrY_G0000397;Parent=HG003_chrY_T0001187;transcript_name=HG003_chrY_T0001187;gene_name=ARSLP1;ID=intron:HG003_chrY_T0001187:0;Name=ARSLP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13202951	13203070	.	+	.	source_transcript=ENST00000420443.1;source_transcript_name=ARSLP1-201;source_gene=ENSG00000224060.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224060.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420443.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420443.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSLP1;transcript_id=HG003_chrY_T0001187;gene_id=HG003_chrY_G0000397;Parent=HG003_chrY_T0001187;transcript_name=HG003_chrY_T0001187;gene_name=ARSLP1;ID=exon:HG003_chrY_T0001187:1;Name=ARSLP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13203071	13208906	.	+	.	source_transcript=ENST00000420443.1;source_transcript_name=ARSLP1-201;source_gene=ENSG00000224060.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224060.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420443.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420443.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSLP1;transcript_id=HG003_chrY_T0001187;gene_id=HG003_chrY_G0000397;Parent=HG003_chrY_T0001187;transcript_name=HG003_chrY_T0001187;gene_name=ARSLP1;ID=intron:HG003_chrY_T0001187:1;Name=ARSLP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13208907	13209258	.	+	.	source_transcript=ENST00000420443.1;source_transcript_name=ARSLP1-201;source_gene=ENSG00000224060.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224060.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420443.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420443.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSLP1;transcript_id=HG003_chrY_T0001187;gene_id=HG003_chrY_G0000397;Parent=HG003_chrY_T0001187;transcript_name=HG003_chrY_T0001187;gene_name=ARSLP1;ID=exon:HG003_chrY_T0001187:2;Name=ARSLP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13215867	13249300	.	+	.	source_gene_common_name=ARSDP1;source_gene=ENSG00000225117.2;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;gene_id=HG003_chrY_G0000398;gene_biotype=unprocessed_pseudogene;gene_name=ARSDP1;gene_sources=liftoff;ID=HG003_chrY_G0000398;Name=ARSDP1
HG003_chrY	CAT	transcript	13215867	13249300	1000	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_G0000398;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=HG003_chrY_T0001189;Name=ARSDP1
HG003_chrY	CAT	exon	13215867	13215909	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=exon:HG003_chrY_T0001189:0;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13215910	13223995	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=intron:HG003_chrY_T0001189:0;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13223996	13224145	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=exon:HG003_chrY_T0001189:1;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13224146	13227712	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=intron:HG003_chrY_T0001189:1;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13227713	13227834	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=exon:HG003_chrY_T0001189:2;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13227835	13228969	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=intron:HG003_chrY_T0001189:2;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13228970	13229091	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=exon:HG003_chrY_T0001189:3;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13229092	13235635	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=intron:HG003_chrY_T0001189:3;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13235636	13236050	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=exon:HG003_chrY_T0001189:4;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13236051	13239655	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=intron:HG003_chrY_T0001189:4;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13239656	13239792	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=exon:HG003_chrY_T0001189:5;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13239793	13244305	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=intron:HG003_chrY_T0001189:5;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13244306	13244439	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=exon:HG003_chrY_T0001189:6;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13244440	13245110	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=intron:HG003_chrY_T0001189:6;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13245111	13245273	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=exon:HG003_chrY_T0001189:7;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13245274	13246280	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=intron:HG003_chrY_T0001189:7;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13246281	13246402	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=exon:HG003_chrY_T0001189:8;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13246403	13248941	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=intron:HG003_chrY_T0001189:8;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13248942	13249300	.	+	.	source_transcript=ENST00000443820.2;source_transcript_name=ARSDP1-201;source_gene=ENSG00000225117.2;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225117.2;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443820.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000443820.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ARSDP1;alternative_source_transcripts=ENST00000443820.2,ENST00000443820.2;transcript_id=HG003_chrY_T0001189;gene_id=HG003_chrY_G0000398;Parent=HG003_chrY_T0001189;transcript_name=HG003_chrY_T0001189;gene_name=ARSDP1;ID=exon:HG003_chrY_T0001189:9;Name=ARSDP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13268760	13282286	.	-	.	source_gene_common_name=GYG2P1;source_gene=ENSG00000206159.14;gene_id=HG003_chrY_G0000399;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=GYG2P1;gene_sources=liftoff;ID=HG003_chrY_G0000399;Name=GYG2P1
HG003_chrY	CAT	transcript	13268760	13282286	1000	-	.	source_transcript=ENST00000382965.4;source_transcript_name=GYG2P1-201;source_gene=ENSG00000206159.14;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000206159.14;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382965.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382965.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;transcript_id=HG003_chrY_T0001208;gene_id=HG003_chrY_G0000399;Parent=HG003_chrY_G0000399;transcript_name=HG003_chrY_T0001208;gene_name=GYG2P1;ID=HG003_chrY_T0001208;Name=GYG2P1
HG003_chrY	CAT	exon	13268760	13268901	.	-	.	source_transcript=ENST00000382965.4;source_transcript_name=GYG2P1-201;source_gene=ENSG00000206159.14;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000206159.14;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382965.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382965.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;transcript_id=HG003_chrY_T0001208;gene_id=HG003_chrY_G0000399;Parent=HG003_chrY_T0001208;transcript_name=HG003_chrY_T0001208;gene_name=GYG2P1;ID=exon:HG003_chrY_T0001208:0;Name=GYG2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13268902	13282279	.	-	.	source_transcript=ENST00000382965.4;source_transcript_name=GYG2P1-201;source_gene=ENSG00000206159.14;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000206159.14;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382965.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382965.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;transcript_id=HG003_chrY_T0001208;gene_id=HG003_chrY_G0000399;Parent=HG003_chrY_T0001208;transcript_name=HG003_chrY_T0001208;gene_name=GYG2P1;ID=intron:HG003_chrY_T0001208:0;Name=GYG2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13282280	13282286	.	-	.	source_transcript=ENST00000382965.4;source_transcript_name=GYG2P1-201;source_gene=ENSG00000206159.14;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000206159.14;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000382965.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382965.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GYG2P1;transcript_id=HG003_chrY_T0001208;gene_id=HG003_chrY_G0000399;Parent=HG003_chrY_T0001208;transcript_name=HG003_chrY_T0001208;gene_name=GYG2P1;ID=exon:HG003_chrY_T0001208:1;Name=GYG2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13302010	13369319	.	-	.	source_gene_common_name=XGY1;source_gene=ENSG00000227447.1;gene_id=HG003_chrY_G0000400;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=XGY1;gene_sources=liftoff;ID=HG003_chrY_G0000400;Name=XGY1
HG003_chrY	CAT	transcript	13302010	13369319	1000	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_G0000400;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=HG003_chrY_T0001210;Name=XGY1
HG003_chrY	CAT	exon	13302010	13302126	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=exon:HG003_chrY_T0001210:0;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13302127	13305228	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=intron:HG003_chrY_T0001210:0;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13305229	13305264	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=exon:HG003_chrY_T0001210:1;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13305265	13318098	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=intron:HG003_chrY_T0001210:1;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13318099	13318149	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=exon:HG003_chrY_T0001210:2;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13318150	13321655	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=intron:HG003_chrY_T0001210:2;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13321656	13321713	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=exon:HG003_chrY_T0001210:3;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13321714	13330396	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=intron:HG003_chrY_T0001210:3;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13330397	13330459	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=exon:HG003_chrY_T0001210:4;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13330460	13346681	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=intron:HG003_chrY_T0001210:4;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13346682	13346705	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=exon:HG003_chrY_T0001210:5;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13346706	13350384	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=intron:HG003_chrY_T0001210:5;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13350385	13350420	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=exon:HG003_chrY_T0001210:6;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13350421	13369258	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=intron:HG003_chrY_T0001210:6;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13369259	13369319	.	-	.	source_transcript=ENST00000381172.3;source_transcript_name=XGY1-201;source_gene=ENSG00000227447.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227447.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000381172.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000381172.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XGY1;transcript_id=HG003_chrY_T0001210;gene_id=HG003_chrY_G0000400;Parent=HG003_chrY_T0001210;transcript_name=HG003_chrY_T0001210;gene_name=XGY1;ID=exon:HG003_chrY_T0001210:7;Name=XGY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13340744	13369666	.	-	.	source_gene_common_name=ENSG00000296286;source_gene=ENSG00000296286.1;gene_id=HG003_chrY_G0000401;gene_biotype=lncRNA;gene_name=ENSG00000296286;gene_sources=liftoff;ID=HG003_chrY_G0000401;Name=ENSG00000296286
HG003_chrY	CAT	transcript	13340744	13369666	1000	-	.	source_transcript=ENST00000737822.1;source_transcript_name=ENST00000737822;source_gene=ENSG00000296286.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296286.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737822.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296286;transcript_id=HG003_chrY_T0001211;gene_id=HG003_chrY_G0000401;Parent=HG003_chrY_G0000401;transcript_name=HG003_chrY_T0001211;gene_name=ENSG00000296286;ID=HG003_chrY_T0001211;Name=ENSG00000296286
HG003_chrY	CAT	exon	13340744	13341239	.	-	.	source_transcript=ENST00000737822.1;source_transcript_name=ENST00000737822;source_gene=ENSG00000296286.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296286.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737822.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296286;transcript_id=HG003_chrY_T0001211;gene_id=HG003_chrY_G0000401;Parent=HG003_chrY_T0001211;transcript_name=HG003_chrY_T0001211;gene_name=ENSG00000296286;ID=exon:HG003_chrY_T0001211:0;Name=ENSG00000296286;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13341240	13346681	.	-	.	source_transcript=ENST00000737822.1;source_transcript_name=ENST00000737822;source_gene=ENSG00000296286.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296286.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737822.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296286;transcript_id=HG003_chrY_T0001211;gene_id=HG003_chrY_G0000401;Parent=HG003_chrY_T0001211;transcript_name=HG003_chrY_T0001211;gene_name=ENSG00000296286;ID=intron:HG003_chrY_T0001211:0;Name=ENSG00000296286;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13346682	13346705	.	-	.	source_transcript=ENST00000737822.1;source_transcript_name=ENST00000737822;source_gene=ENSG00000296286.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296286.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737822.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296286;transcript_id=HG003_chrY_T0001211;gene_id=HG003_chrY_G0000401;Parent=HG003_chrY_T0001211;transcript_name=HG003_chrY_T0001211;gene_name=ENSG00000296286;ID=exon:HG003_chrY_T0001211:1;Name=ENSG00000296286;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13346706	13369258	.	-	.	source_transcript=ENST00000737822.1;source_transcript_name=ENST00000737822;source_gene=ENSG00000296286.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296286.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737822.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296286;transcript_id=HG003_chrY_T0001211;gene_id=HG003_chrY_G0000401;Parent=HG003_chrY_T0001211;transcript_name=HG003_chrY_T0001211;gene_name=ENSG00000296286;ID=intron:HG003_chrY_T0001211:1;Name=ENSG00000296286;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13369259	13369666	.	-	.	source_transcript=ENST00000737822.1;source_transcript_name=ENST00000737822;source_gene=ENSG00000296286.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296286.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000737822.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000737822.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296286;transcript_id=HG003_chrY_T0001211;gene_id=HG003_chrY_G0000401;Parent=HG003_chrY_T0001211;transcript_name=HG003_chrY_T0001211;gene_name=ENSG00000296286;ID=exon:HG003_chrY_T0001211:2;Name=ENSG00000296286;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13399800	13723448	.	+	.	source_gene_common_name=USP9Y;source_gene=ENSG00000114374.13;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;gene_id=HG003_chrY_G0000402;gene_biotype=protein_coding;gene_name=USP9Y;gene_sources=liftoff;ID=HG003_chrY_G0000402;Name=USP9Y
HG003_chrY	CAT	transcript	13399800	13571483	1000	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_G0000402;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=HG003_chrY_T0001212;Name=USP9Y
HG003_chrY	CAT	exon	13399800	13400157	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=exon:HG003_chrY_T0001212:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13400158	13406933	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=intron:HG003_chrY_T0001212:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13406934	13407088	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=exon:HG003_chrY_T0001212:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13407089	13408260	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=intron:HG003_chrY_T0001212:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13408261	13408400	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=exon:HG003_chrY_T0001212:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13408401	13524967	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=intron:HG003_chrY_T0001212:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13524968	13525318	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=exon:HG003_chrY_T0001212:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525319	13527251	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=intron:HG003_chrY_T0001212:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13527252	13527298	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=exon:HG003_chrY_T0001212:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13527299	13549122	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=intron:HG003_chrY_T0001212:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13549123	13549216	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=exon:HG003_chrY_T0001212:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13549217	13552935	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=intron:HG003_chrY_T0001212:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13552936	13553051	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=exon:HG003_chrY_T0001212:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13553052	13564619	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=intron:HG003_chrY_T0001212:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13564620	13564665	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=exon:HG003_chrY_T0001212:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13564666	13570373	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=intron:HG003_chrY_T0001212:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13570374	13571483	.	+	.	source_transcript=ENST00000457658.6;source_transcript_name=USP9Y-206;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000457658.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000457658.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000457658.6,ENST00000457658.6;transcript_id=HG003_chrY_T0001212;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001212;transcript_name=HG003_chrY_T0001212;gene_name=USP9Y;ID=exon:HG003_chrY_T0001212:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13524946	13554843	1000	+	.	source_transcript=ENST00000440408.5;source_transcript_name=USP9Y-204;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000440408.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440408.5;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000440408.5,ENST00000440408.5;transcript_id=HG003_chrY_T0001220;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_G0000402;transcript_name=HG003_chrY_T0001220;gene_name=USP9Y;ID=HG003_chrY_T0001220;Name=USP9Y
HG003_chrY	CAT	exon	13524946	13525318	.	+	.	source_transcript=ENST00000440408.5;source_transcript_name=USP9Y-204;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000440408.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440408.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000440408.5,ENST00000440408.5;transcript_id=HG003_chrY_T0001220;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001220;transcript_name=HG003_chrY_T0001220;gene_name=USP9Y;ID=exon:HG003_chrY_T0001220:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525319	13527251	.	+	.	source_transcript=ENST00000440408.5;source_transcript_name=USP9Y-204;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000440408.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440408.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000440408.5,ENST00000440408.5;transcript_id=HG003_chrY_T0001220;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001220;transcript_name=HG003_chrY_T0001220;gene_name=USP9Y;ID=intron:HG003_chrY_T0001220:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13527252	13527298	.	+	.	source_transcript=ENST00000440408.5;source_transcript_name=USP9Y-204;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000440408.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440408.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000440408.5,ENST00000440408.5;transcript_id=HG003_chrY_T0001220;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001220;transcript_name=HG003_chrY_T0001220;gene_name=USP9Y;ID=exon:HG003_chrY_T0001220:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13527299	13549122	.	+	.	source_transcript=ENST00000440408.5;source_transcript_name=USP9Y-204;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000440408.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440408.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000440408.5,ENST00000440408.5;transcript_id=HG003_chrY_T0001220;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001220;transcript_name=HG003_chrY_T0001220;gene_name=USP9Y;ID=intron:HG003_chrY_T0001220:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13549123	13549216	.	+	.	source_transcript=ENST00000440408.5;source_transcript_name=USP9Y-204;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000440408.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440408.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000440408.5,ENST00000440408.5;transcript_id=HG003_chrY_T0001220;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001220;transcript_name=HG003_chrY_T0001220;gene_name=USP9Y;ID=exon:HG003_chrY_T0001220:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13549217	13550073	.	+	.	source_transcript=ENST00000440408.5;source_transcript_name=USP9Y-204;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000440408.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440408.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000440408.5,ENST00000440408.5;transcript_id=HG003_chrY_T0001220;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001220;transcript_name=HG003_chrY_T0001220;gene_name=USP9Y;ID=intron:HG003_chrY_T0001220:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13550074	13554843	.	+	.	source_transcript=ENST00000440408.5;source_transcript_name=USP9Y-204;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000440408.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440408.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000440408.5,ENST00000440408.5;transcript_id=HG003_chrY_T0001220;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001220;transcript_name=HG003_chrY_T0001220;gene_name=USP9Y;ID=exon:HG003_chrY_T0001220:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13524980	13723411	100	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_G0000402;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=HG003_chrY_T0001221;Name=USP9Y
HG003_chrY	CAT	exon	13524980	13525318	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525319	13527251	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13527252	13527298	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13527299	13549122	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13549123	13549216	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13549217	13564619	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13564620	13564665	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13564666	13572001	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13572002	13572157	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13572062	13572157	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	13572062	13572064	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=start_codon:HG003_chrY_T0001221;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13572158	13583203	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13583204	13583352	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13583204	13583352	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13583353	13584721	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13584722	13584801	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13584722	13584801	.	+	1	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13584802	13587726	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13587727	13587839	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13587727	13587839	.	+	2	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13587840	13589188	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13589189	13589407	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13589189	13589407	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13589408	13598225	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13598226	13598341	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13598226	13598341	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13598342	13598611	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13598612	13598863	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13598612	13598863	.	+	1	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13598864	13599024	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13599025	13599163	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13599025	13599163	.	+	1	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13599164	13600770	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13600771	13600923	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13600771	13600923	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13600924	13602138	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13602139	13602243	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13602139	13602243	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13602244	13619805	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13619806	13620012	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13619806	13620012	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13620013	13621119	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13621120	13621256	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13621120	13621256	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13621257	13623097	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13623098	13623231	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13623098	13623231	.	+	1	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13623232	13633682	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13633683	13633770	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13633683	13633770	.	+	2	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13633771	13636197	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13636198	13636540	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13636198	13636540	.	+	1	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13636541	13638085	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13638086	13638181	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13638086	13638181	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13638182	13639263	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13639264	13639475	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13639264	13639475	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13639476	13640633	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13640634	13640874	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13640634	13640874	.	+	1	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13640875	13641220	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13641221	13641370	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13641221	13641370	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13641371	13642140	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13642141	13642261	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13642141	13642261	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13642262	13648817	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13648818	13648948	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13648818	13648948	.	+	2	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13648949	13649135	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13649136	13649414	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13649136	13649414	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13649415	13653020	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13653021	13653146	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13653021	13653146	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13653147	13654112	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13654113	13654238	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13654113	13654238	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13654239	13655645	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13655646	13655815	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13655646	13655815	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13655816	13672792	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13672793	13672901	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13672793	13672901	.	+	1	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13672902	13673285	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13673286	13673432	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13673286	13673432	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13673433	13674248	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13674249	13674395	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13674249	13674395	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13674396	13675443	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13675444	13675666	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13675444	13675666	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13675667	13678737	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13678738	13678958	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13678738	13678958	.	+	2	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13678959	13681033	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13681034	13681224	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13681034	13681224	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13681225	13696298	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13696299	13696472	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13696299	13696472	.	+	1	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13696473	13700521	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13700522	13700663	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13700522	13700663	.	+	1	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13700664	13702474	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13702475	13703225	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13702475	13703225	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13703226	13703620	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13703621	13703744	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13703621	13703744	.	+	2	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13703745	13704848	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13704849	13705074	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13704849	13705074	.	+	1	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13705075	13705672	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13705673	13705802	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13705673	13705802	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13705803	13708941	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13708942	13709127	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13708942	13709127	.	+	2	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709128	13709541	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13709542	13709762	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13709542	13709762	.	+	2	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709763	13709847	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13709848	13709936	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13709848	13709936	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709937	13718948	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13718949	13719105	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:44;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13718949	13719105	.	+	1	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719106	13719241	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:44;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13719242	13719454	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:45;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13719242	13719454	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719455	13720174	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:45;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13720175	13720270	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:46;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13720175	13720270	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13720271	13721887	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=intron:HG003_chrY_T0001221:46;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13721888	13723411	.	+	.	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=exon:HG003_chrY_T0001221:47;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13721888	13722025	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001221:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	13722023	13722025	.	+	0	source_transcript=ENST00000651177.1;source_transcript_name=USP9Y-209;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000651177.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651177.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000651177.1,ENST00000651177.1;transcript_id=HG003_chrY_T0001221;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001221;transcript_name=HG003_chrY_T0001221;gene_name=USP9Y;ID=stop_codon:HG003_chrY_T0001221;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13525149	13550865	1000	+	.	source_transcript=ENST00000417071.1;source_transcript_name=USP9Y-202;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000417071.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417071.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000417071.1,ENST00000417071.1;transcript_id=HG003_chrY_T0001222;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_G0000402;transcript_name=HG003_chrY_T0001222;gene_name=USP9Y;ID=HG003_chrY_T0001222;Name=USP9Y
HG003_chrY	CAT	exon	13525149	13525318	.	+	.	source_transcript=ENST00000417071.1;source_transcript_name=USP9Y-202;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000417071.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417071.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000417071.1,ENST00000417071.1;transcript_id=HG003_chrY_T0001222;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001222;transcript_name=HG003_chrY_T0001222;gene_name=USP9Y;ID=exon:HG003_chrY_T0001222:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525319	13527251	.	+	.	source_transcript=ENST00000417071.1;source_transcript_name=USP9Y-202;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000417071.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417071.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000417071.1,ENST00000417071.1;transcript_id=HG003_chrY_T0001222;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001222;transcript_name=HG003_chrY_T0001222;gene_name=USP9Y;ID=intron:HG003_chrY_T0001222:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13527252	13527298	.	+	.	source_transcript=ENST00000417071.1;source_transcript_name=USP9Y-202;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000417071.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417071.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000417071.1,ENST00000417071.1;transcript_id=HG003_chrY_T0001222;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001222;transcript_name=HG003_chrY_T0001222;gene_name=USP9Y;ID=exon:HG003_chrY_T0001222:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13527299	13549122	.	+	.	source_transcript=ENST00000417071.1;source_transcript_name=USP9Y-202;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000417071.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417071.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000417071.1,ENST00000417071.1;transcript_id=HG003_chrY_T0001222;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001222;transcript_name=HG003_chrY_T0001222;gene_name=USP9Y;ID=intron:HG003_chrY_T0001222:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13549123	13549216	.	+	.	source_transcript=ENST00000417071.1;source_transcript_name=USP9Y-202;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000417071.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417071.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000417071.1,ENST00000417071.1;transcript_id=HG003_chrY_T0001222;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001222;transcript_name=HG003_chrY_T0001222;gene_name=USP9Y;ID=exon:HG003_chrY_T0001222:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13549217	13550294	.	+	.	source_transcript=ENST00000417071.1;source_transcript_name=USP9Y-202;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000417071.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417071.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000417071.1,ENST00000417071.1;transcript_id=HG003_chrY_T0001222;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001222;transcript_name=HG003_chrY_T0001222;gene_name=USP9Y;ID=intron:HG003_chrY_T0001222:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13550295	13550865	.	+	.	source_transcript=ENST00000417071.1;source_transcript_name=USP9Y-202;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000417071.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417071.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000417071.1,ENST00000417071.1;transcript_id=HG003_chrY_T0001222;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001222;transcript_name=HG003_chrY_T0001222;gene_name=USP9Y;ID=exon:HG003_chrY_T0001222:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13563841	13723448	100	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_G0000402;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=HG003_chrY_T0001223;Name=USP9Y
HG003_chrY	CAT	exon	13563841	13564665	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13564666	13571247	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13571248	13571307	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13571308	13572001	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13572002	13572157	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13572062	13572157	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	13572062	13572064	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=start_codon:HG003_chrY_T0001223;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13572158	13583203	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13583204	13583352	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13583204	13583352	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13583353	13584721	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13584722	13584801	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13584722	13584801	.	+	1	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13584802	13587726	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13587727	13587839	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13587727	13587839	.	+	2	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13587840	13589188	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13589189	13589407	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13589189	13589407	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13589408	13598225	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13598226	13598341	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13598226	13598341	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13598342	13598611	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13598612	13598863	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13598612	13598863	.	+	1	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13598864	13599024	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13599025	13599163	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13599025	13599163	.	+	1	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13599164	13600770	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13600771	13600923	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13600771	13600923	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13600924	13602138	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13602139	13602243	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13602139	13602243	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13602244	13619805	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13619806	13620012	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13619806	13620012	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13620013	13621119	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13621120	13621256	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13621120	13621256	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13621257	13623097	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13623098	13623231	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13623098	13623231	.	+	1	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13623232	13633682	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13633683	13633770	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13633683	13633770	.	+	2	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13633771	13636197	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13636198	13636540	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13636198	13636540	.	+	1	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13636541	13638085	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13638086	13638181	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13638086	13638181	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13638182	13639263	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13639264	13639475	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13639264	13639475	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13639476	13640633	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13640634	13640874	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13640634	13640874	.	+	1	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13640875	13641220	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13641221	13641370	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13641221	13641370	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13641371	13642140	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13642141	13642261	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13642141	13642261	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13642262	13648817	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13648818	13648948	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13648818	13648948	.	+	2	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13648949	13649135	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13649136	13649414	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13649136	13649414	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13649415	13653020	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13653021	13653146	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13653021	13653146	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13653147	13654112	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13654113	13654238	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13654113	13654238	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13654239	13655645	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13655646	13655815	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13655646	13655815	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13655816	13672792	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13672793	13672901	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13672793	13672901	.	+	1	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13672902	13673285	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13673286	13673432	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13673286	13673432	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13673433	13674248	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13674249	13674395	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13674249	13674395	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13674396	13675443	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13675444	13675666	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13675444	13675666	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13675667	13678737	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13678738	13678958	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13678738	13678958	.	+	2	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13678959	13681033	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13681034	13681224	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13681034	13681224	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13681225	13696298	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13696299	13696472	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13696299	13696472	.	+	1	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13696473	13700521	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13700522	13700663	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13700522	13700663	.	+	1	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13700664	13702474	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13702475	13703225	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13702475	13703225	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13703226	13703620	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13703621	13703744	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13703621	13703744	.	+	2	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13703745	13704848	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13704849	13705074	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13704849	13705074	.	+	1	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13705075	13705672	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13705673	13705802	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13705673	13705802	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13705803	13708941	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13708942	13709127	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13708942	13709127	.	+	2	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709128	13709541	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13709542	13709762	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13709542	13709762	.	+	2	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709763	13709847	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13709848	13709936	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13709848	13709936	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709937	13718948	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13718949	13719105	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13718949	13719105	.	+	1	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719106	13719241	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13719242	13719454	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13719242	13719454	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719455	13720174	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13720175	13720270	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:44;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13720175	13720270	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13720271	13721887	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=intron:HG003_chrY_T0001223:44;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13721888	13723448	.	+	.	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=exon:HG003_chrY_T0001223:45;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13721888	13722025	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001223:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	13722023	13722025	.	+	0	source_transcript=ENST00000338981.7;source_transcript_name=USP9Y-201;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000338981.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000338981.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000338981.7,ENST00000338981.7;transcript_id=HG003_chrY_T0001223;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001223;transcript_name=HG003_chrY_T0001223;gene_name=USP9Y;ID=stop_codon:HG003_chrY_T0001223;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13564650	13583818	1000	+	.	source_transcript=ENST00000493168.1;source_transcript_name=USP9Y-208;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000493168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000493168.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000493168.1,ENST00000493168.1;transcript_id=HG003_chrY_T0001224;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_G0000402;transcript_name=HG003_chrY_T0001224;gene_name=USP9Y;ID=HG003_chrY_T0001224;Name=USP9Y
HG003_chrY	CAT	exon	13564650	13564665	.	+	.	source_transcript=ENST00000493168.1;source_transcript_name=USP9Y-208;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000493168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000493168.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000493168.1,ENST00000493168.1;transcript_id=HG003_chrY_T0001224;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001224;transcript_name=HG003_chrY_T0001224;gene_name=USP9Y;ID=exon:HG003_chrY_T0001224:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13564666	13572001	.	+	.	source_transcript=ENST00000493168.1;source_transcript_name=USP9Y-208;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000493168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000493168.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000493168.1,ENST00000493168.1;transcript_id=HG003_chrY_T0001224;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001224;transcript_name=HG003_chrY_T0001224;gene_name=USP9Y;ID=intron:HG003_chrY_T0001224:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13572002	13572157	.	+	.	source_transcript=ENST00000493168.1;source_transcript_name=USP9Y-208;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000493168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000493168.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000493168.1,ENST00000493168.1;transcript_id=HG003_chrY_T0001224;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001224;transcript_name=HG003_chrY_T0001224;gene_name=USP9Y;ID=exon:HG003_chrY_T0001224:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13572158	13583203	.	+	.	source_transcript=ENST00000493168.1;source_transcript_name=USP9Y-208;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000493168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000493168.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000493168.1,ENST00000493168.1;transcript_id=HG003_chrY_T0001224;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001224;transcript_name=HG003_chrY_T0001224;gene_name=USP9Y;ID=intron:HG003_chrY_T0001224:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13583204	13583818	.	+	.	source_transcript=ENST00000493168.1;source_transcript_name=USP9Y-208;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000493168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000493168.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000493168.1,ENST00000493168.1;transcript_id=HG003_chrY_T0001224;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001224;transcript_name=HG003_chrY_T0001224;gene_name=USP9Y;ID=exon:HG003_chrY_T0001224:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13572050	13723448	1000	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_G0000402;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=HG003_chrY_T0001225;Name=USP9Y
HG003_chrY	CAT	exon	13572050	13572157	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13572158	13583203	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13583204	13583352	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13583353	13584721	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13584722	13584801	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13584802	13587726	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13587727	13587839	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13587840	13589188	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13589189	13589407	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13589408	13598225	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13598226	13598341	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13598342	13598611	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:5;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13598612	13598863	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13598864	13599024	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:6;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13599025	13599163	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13599164	13600770	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:7;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13600771	13600923	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13600924	13602138	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:8;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13602139	13602243	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13602244	13619805	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:9;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13619806	13620012	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13620013	13621119	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:10;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13621120	13621256	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13621257	13623097	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:11;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13623098	13623231	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13623232	13633682	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:12;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13633683	13633770	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13633771	13636197	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:13;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13636198	13636540	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13636541	13638085	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:14;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13638086	13638181	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13638182	13639263	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:15;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13639264	13639475	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13639476	13640633	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:16;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13640634	13640874	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13640875	13641220	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:17;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13641221	13641370	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13641371	13642140	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:18;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13642141	13642261	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13642262	13648817	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:19;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13648818	13648948	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13648949	13649135	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:20;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13649136	13649414	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13649415	13653020	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:21;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13653021	13653146	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13653147	13654112	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:22;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13654113	13654238	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13654239	13655645	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:23;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13655646	13655815	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13655816	13672792	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:24;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13672793	13672901	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13672902	13673285	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:25;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13673286	13673432	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13673433	13674248	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:26;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13674249	13674395	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13674396	13675443	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:27;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13675444	13675666	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13675667	13678737	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:28;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13678738	13678958	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13678959	13681033	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:29;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13681034	13681224	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13681225	13696298	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:30;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13696299	13696472	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13696473	13700521	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:31;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13700522	13700663	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13700664	13702474	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:32;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13702475	13703225	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13703226	13703620	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:33;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13703621	13703744	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13703745	13704833	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:34;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13704834	13705074	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13705075	13705672	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:35;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13705673	13705802	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13705803	13708941	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:36;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13708942	13709127	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709128	13709541	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:37;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13709542	13709762	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709763	13709847	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:38;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13709848	13709936	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709937	13718948	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:39;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13718949	13719105	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719106	13719241	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:40;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13719242	13719454	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719455	13720174	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:41;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13720175	13720270	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13720271	13721887	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=intron:HG003_chrY_T0001225:42;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13721888	13723448	.	+	.	source_transcript=ENST00000426564.6;source_transcript_name=USP9Y-203;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000426564.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426564.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000426564.6,ENST00000426564.6;transcript_id=HG003_chrY_T0001225;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001225;transcript_name=HG003_chrY_T0001225;gene_name=USP9Y;ID=exon:HG003_chrY_T0001225:43;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13709654	13722221	100	+	.	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_G0000402;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=HG003_chrY_T0001227;Name=USP9Y
HG003_chrY	CAT	exon	13709654	13709762	.	+	.	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=exon:HG003_chrY_T0001227:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13709654	13709762	.	+	2	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001227:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13709763	13718948	.	+	.	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=intron:HG003_chrY_T0001227:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13718949	13719105	.	+	.	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=exon:HG003_chrY_T0001227:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13718949	13719105	.	+	1	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001227:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719106	13719241	.	+	.	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=intron:HG003_chrY_T0001227:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13719242	13719454	.	+	.	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=exon:HG003_chrY_T0001227:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13719242	13719454	.	+	0	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001227:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13719455	13720174	.	+	.	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=intron:HG003_chrY_T0001227:2;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13720175	13720270	.	+	.	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=exon:HG003_chrY_T0001227:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13720175	13720270	.	+	0	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001227:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13720271	13721887	.	+	.	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=intron:HG003_chrY_T0001227:3;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13721888	13722221	.	+	.	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=exon:HG003_chrY_T0001227:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13721888	13722025	.	+	0	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=CDS:HG003_chrY_T0001227:4;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	13722023	13722025	.	+	0	source_transcript=ENST00000453031.1;source_transcript_name=USP9Y-205;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000453031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453031.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000453031.1,ENST00000453031.1;transcript_id=HG003_chrY_T0001227;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001227;transcript_name=HG003_chrY_T0001227;gene_name=USP9Y;ID=stop_codon:HG003_chrY_T0001227;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13719422	13723448	1000	+	.	source_transcript=ENST00000471409.1;source_transcript_name=USP9Y-207;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000471409.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000471409.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000471409.1,ENST00000471409.1;transcript_id=HG003_chrY_T0001228;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_G0000402;transcript_name=HG003_chrY_T0001228;gene_name=USP9Y;ID=HG003_chrY_T0001228;Name=USP9Y
HG003_chrY	CAT	exon	13719422	13720270	.	+	.	source_transcript=ENST00000471409.1;source_transcript_name=USP9Y-207;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000471409.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000471409.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000471409.1,ENST00000471409.1;transcript_id=HG003_chrY_T0001228;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001228;transcript_name=HG003_chrY_T0001228;gene_name=USP9Y;ID=exon:HG003_chrY_T0001228:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13720271	13721887	.	+	.	source_transcript=ENST00000471409.1;source_transcript_name=USP9Y-207;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000471409.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000471409.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000471409.1,ENST00000471409.1;transcript_id=HG003_chrY_T0001228;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001228;transcript_name=HG003_chrY_T0001228;gene_name=USP9Y;ID=intron:HG003_chrY_T0001228:0;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13721888	13723448	.	+	.	source_transcript=ENST00000471409.1;source_transcript_name=USP9Y-207;source_gene=ENSG00000114374.13;source_gene_biotype=protein_coding;original_gene_id=ENSG00000114374.13;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000471409.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000471409.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9Y;alternative_source_transcripts=ENST00000471409.1,ENST00000471409.1;transcript_id=HG003_chrY_T0001228;gene_id=HG003_chrY_G0000402;Parent=HG003_chrY_T0001228;transcript_name=HG003_chrY_T0001228;gene_name=USP9Y;ID=exon:HG003_chrY_T0001228:1;Name=USP9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13399923	13407033	.	+	.	source_gene_common_name=SHROOM2P1;source_gene=ENSG00000226863.1;alternative_source_transcripts=ENST00000434773.1,ENST00000434773.1;gene_id=HG003_chrY_G0000403;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=SHROOM2P1;gene_sources=liftoff;ID=HG003_chrY_G0000403;Name=SHROOM2P1
HG003_chrY	CAT	transcript	13399923	13407033	1000	+	.	source_transcript=ENST00000434773.1;source_transcript_name=SHROOM2P1-201;source_gene=ENSG00000226863.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226863.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434773.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHROOM2P1;alternative_source_transcripts=ENST00000434773.1,ENST00000434773.1;transcript_id=HG003_chrY_T0001213;gene_id=HG003_chrY_G0000403;Parent=HG003_chrY_G0000403;transcript_name=HG003_chrY_T0001213;gene_name=SHROOM2P1;ID=HG003_chrY_T0001213;Name=SHROOM2P1
HG003_chrY	CAT	exon	13399923	13400051	.	+	.	source_transcript=ENST00000434773.1;source_transcript_name=SHROOM2P1-201;source_gene=ENSG00000226863.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226863.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434773.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHROOM2P1;alternative_source_transcripts=ENST00000434773.1,ENST00000434773.1;transcript_id=HG003_chrY_T0001213;gene_id=HG003_chrY_G0000403;Parent=HG003_chrY_T0001213;transcript_name=HG003_chrY_T0001213;gene_name=SHROOM2P1;ID=exon:HG003_chrY_T0001213:0;Name=SHROOM2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13400052	13403209	.	+	.	source_transcript=ENST00000434773.1;source_transcript_name=SHROOM2P1-201;source_gene=ENSG00000226863.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226863.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434773.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHROOM2P1;alternative_source_transcripts=ENST00000434773.1,ENST00000434773.1;transcript_id=HG003_chrY_T0001213;gene_id=HG003_chrY_G0000403;Parent=HG003_chrY_T0001213;transcript_name=HG003_chrY_T0001213;gene_name=SHROOM2P1;ID=intron:HG003_chrY_T0001213:0;Name=SHROOM2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13403210	13405364	.	+	.	source_transcript=ENST00000434773.1;source_transcript_name=SHROOM2P1-201;source_gene=ENSG00000226863.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226863.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434773.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHROOM2P1;alternative_source_transcripts=ENST00000434773.1,ENST00000434773.1;transcript_id=HG003_chrY_T0001213;gene_id=HG003_chrY_G0000403;Parent=HG003_chrY_T0001213;transcript_name=HG003_chrY_T0001213;gene_name=SHROOM2P1;ID=exon:HG003_chrY_T0001213:1;Name=SHROOM2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13405365	13406933	.	+	.	source_transcript=ENST00000434773.1;source_transcript_name=SHROOM2P1-201;source_gene=ENSG00000226863.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226863.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434773.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHROOM2P1;alternative_source_transcripts=ENST00000434773.1,ENST00000434773.1;transcript_id=HG003_chrY_T0001213;gene_id=HG003_chrY_G0000403;Parent=HG003_chrY_T0001213;transcript_name=HG003_chrY_T0001213;gene_name=SHROOM2P1;ID=intron:HG003_chrY_T0001213:1;Name=SHROOM2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13406934	13407033	.	+	.	source_transcript=ENST00000434773.1;source_transcript_name=SHROOM2P1-201;source_gene=ENSG00000226863.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226863.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434773.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434773.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SHROOM2P1;alternative_source_transcripts=ENST00000434773.1,ENST00000434773.1;transcript_id=HG003_chrY_T0001213;gene_id=HG003_chrY_G0000403;Parent=HG003_chrY_T0001213;transcript_name=HG003_chrY_T0001213;gene_name=SHROOM2P1;ID=exon:HG003_chrY_T0001213:2;Name=SHROOM2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13481134	13496552	.	-	.	source_gene_common_name=MED14P1;source_gene=ENSG00000233774.1;alternative_source_transcripts=ENST00000430517.1,ENST00000430517.1;gene_id=HG003_chrY_G0000404;gene_biotype=unprocessed_pseudogene;gene_name=MED14P1;gene_sources=liftoff;ID=HG003_chrY_G0000404;Name=MED14P1
HG003_chrY	CAT	transcript	13481134	13496552	1000	-	.	source_transcript=ENST00000430517.1;source_transcript_name=MED14P1-201;source_gene=ENSG00000233774.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233774.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430517.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430517.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MED14P1;alternative_source_transcripts=ENST00000430517.1,ENST00000430517.1;transcript_id=HG003_chrY_T0001214;gene_id=HG003_chrY_G0000404;Parent=HG003_chrY_G0000404;transcript_name=HG003_chrY_T0001214;gene_name=MED14P1;ID=HG003_chrY_T0001214;Name=MED14P1
HG003_chrY	CAT	exon	13481134	13481274	.	-	.	source_transcript=ENST00000430517.1;source_transcript_name=MED14P1-201;source_gene=ENSG00000233774.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233774.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430517.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430517.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MED14P1;alternative_source_transcripts=ENST00000430517.1,ENST00000430517.1;transcript_id=HG003_chrY_T0001214;gene_id=HG003_chrY_G0000404;Parent=HG003_chrY_T0001214;transcript_name=HG003_chrY_T0001214;gene_name=MED14P1;ID=exon:HG003_chrY_T0001214:0;Name=MED14P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13481275	13481776	.	-	.	source_transcript=ENST00000430517.1;source_transcript_name=MED14P1-201;source_gene=ENSG00000233774.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233774.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430517.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430517.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MED14P1;alternative_source_transcripts=ENST00000430517.1,ENST00000430517.1;transcript_id=HG003_chrY_T0001214;gene_id=HG003_chrY_G0000404;Parent=HG003_chrY_T0001214;transcript_name=HG003_chrY_T0001214;gene_name=MED14P1;ID=intron:HG003_chrY_T0001214:0;Name=MED14P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13481777	13481884	.	-	.	source_transcript=ENST00000430517.1;source_transcript_name=MED14P1-201;source_gene=ENSG00000233774.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233774.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430517.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430517.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MED14P1;alternative_source_transcripts=ENST00000430517.1,ENST00000430517.1;transcript_id=HG003_chrY_T0001214;gene_id=HG003_chrY_G0000404;Parent=HG003_chrY_T0001214;transcript_name=HG003_chrY_T0001214;gene_name=MED14P1;ID=exon:HG003_chrY_T0001214:1;Name=MED14P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13481885	13482180	.	-	.	source_transcript=ENST00000430517.1;source_transcript_name=MED14P1-201;source_gene=ENSG00000233774.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233774.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430517.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430517.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MED14P1;alternative_source_transcripts=ENST00000430517.1,ENST00000430517.1;transcript_id=HG003_chrY_T0001214;gene_id=HG003_chrY_G0000404;Parent=HG003_chrY_T0001214;transcript_name=HG003_chrY_T0001214;gene_name=MED14P1;ID=intron:HG003_chrY_T0001214:1;Name=MED14P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13482181	13482316	.	-	.	source_transcript=ENST00000430517.1;source_transcript_name=MED14P1-201;source_gene=ENSG00000233774.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233774.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430517.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430517.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MED14P1;alternative_source_transcripts=ENST00000430517.1,ENST00000430517.1;transcript_id=HG003_chrY_T0001214;gene_id=HG003_chrY_G0000404;Parent=HG003_chrY_T0001214;transcript_name=HG003_chrY_T0001214;gene_name=MED14P1;ID=exon:HG003_chrY_T0001214:2;Name=MED14P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13482317	13494879	.	-	.	source_transcript=ENST00000430517.1;source_transcript_name=MED14P1-201;source_gene=ENSG00000233774.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233774.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430517.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430517.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MED14P1;alternative_source_transcripts=ENST00000430517.1,ENST00000430517.1;transcript_id=HG003_chrY_T0001214;gene_id=HG003_chrY_G0000404;Parent=HG003_chrY_T0001214;transcript_name=HG003_chrY_T0001214;gene_name=MED14P1;ID=intron:HG003_chrY_T0001214:2;Name=MED14P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13494880	13495024	.	-	.	source_transcript=ENST00000430517.1;source_transcript_name=MED14P1-201;source_gene=ENSG00000233774.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233774.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430517.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430517.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MED14P1;alternative_source_transcripts=ENST00000430517.1,ENST00000430517.1;transcript_id=HG003_chrY_T0001214;gene_id=HG003_chrY_G0000404;Parent=HG003_chrY_T0001214;transcript_name=HG003_chrY_T0001214;gene_name=MED14P1;ID=exon:HG003_chrY_T0001214:3;Name=MED14P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13495025	13496434	.	-	.	source_transcript=ENST00000430517.1;source_transcript_name=MED14P1-201;source_gene=ENSG00000233774.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233774.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430517.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430517.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MED14P1;alternative_source_transcripts=ENST00000430517.1,ENST00000430517.1;transcript_id=HG003_chrY_T0001214;gene_id=HG003_chrY_G0000404;Parent=HG003_chrY_T0001214;transcript_name=HG003_chrY_T0001214;gene_name=MED14P1;ID=intron:HG003_chrY_T0001214:3;Name=MED14P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13496435	13496552	.	-	.	source_transcript=ENST00000430517.1;source_transcript_name=MED14P1-201;source_gene=ENSG00000233774.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233774.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430517.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430517.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MED14P1;alternative_source_transcripts=ENST00000430517.1,ENST00000430517.1;transcript_id=HG003_chrY_T0001214;gene_id=HG003_chrY_G0000404;Parent=HG003_chrY_T0001214;transcript_name=HG003_chrY_T0001214;gene_name=MED14P1;ID=exon:HG003_chrY_T0001214:4;Name=MED14P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13523922	13526152	.	-	.	source_gene_common_name=ENSG00000286009;source_gene=ENSG00000286009.3;alternative_source_transcripts=ENST00000652216.2,ENST00000652216.2;gene_id=HG003_chrY_G0000405;gene_biotype=lncRNA;gene_name=ENSG00000286009;gene_sources=liftoff;ID=HG003_chrY_G0000405;Name=ENSG00000286009
HG003_chrY	CAT	transcript	13523922	13526147	1000	-	.	source_transcript=ENST00000652216.2;source_transcript_name=ENST00000652216;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652216.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000652216.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000652216.2,ENST00000652216.2;transcript_id=HG003_chrY_T0001215;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_G0000405;transcript_name=HG003_chrY_T0001215;gene_name=ENSG00000286009;ID=HG003_chrY_T0001215;Name=ENSG00000286009
HG003_chrY	CAT	exon	13523922	13524734	.	-	.	source_transcript=ENST00000652216.2;source_transcript_name=ENST00000652216;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652216.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000652216.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000652216.2,ENST00000652216.2;transcript_id=HG003_chrY_T0001215;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001215;transcript_name=HG003_chrY_T0001215;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001215:0;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13524735	13525137	.	-	.	source_transcript=ENST00000652216.2;source_transcript_name=ENST00000652216;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652216.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000652216.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000652216.2,ENST00000652216.2;transcript_id=HG003_chrY_T0001215;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001215;transcript_name=HG003_chrY_T0001215;gene_name=ENSG00000286009;ID=intron:HG003_chrY_T0001215:0;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13525138	13525363	.	-	.	source_transcript=ENST00000652216.2;source_transcript_name=ENST00000652216;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652216.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000652216.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000652216.2,ENST00000652216.2;transcript_id=HG003_chrY_T0001215;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001215;transcript_name=HG003_chrY_T0001215;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001215:1;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525364	13525972	.	-	.	source_transcript=ENST00000652216.2;source_transcript_name=ENST00000652216;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652216.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000652216.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000652216.2,ENST00000652216.2;transcript_id=HG003_chrY_T0001215;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001215;transcript_name=HG003_chrY_T0001215;gene_name=ENSG00000286009;ID=intron:HG003_chrY_T0001215:1;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13525973	13526147	.	-	.	source_transcript=ENST00000652216.2;source_transcript_name=ENST00000652216;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652216.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000652216.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000652216.2,ENST00000652216.2;transcript_id=HG003_chrY_T0001215;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001215;transcript_name=HG003_chrY_T0001215;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001215:2;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13523925	13526118	1000	-	.	source_transcript=ENST00000662422.2;source_transcript_name=ENST00000662422;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662422.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000662422.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000662422.2,ENST00000662422.2;transcript_id=HG003_chrY_T0001216;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_G0000405;transcript_name=HG003_chrY_T0001216;gene_name=ENSG00000286009;ID=HG003_chrY_T0001216;Name=ENSG00000286009
HG003_chrY	CAT	exon	13523925	13524737	.	-	.	source_transcript=ENST00000662422.2;source_transcript_name=ENST00000662422;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662422.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000662422.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000662422.2,ENST00000662422.2;transcript_id=HG003_chrY_T0001216;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001216;transcript_name=HG003_chrY_T0001216;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001216:0;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13524738	13525137	.	-	.	source_transcript=ENST00000662422.2;source_transcript_name=ENST00000662422;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662422.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000662422.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000662422.2,ENST00000662422.2;transcript_id=HG003_chrY_T0001216;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001216;transcript_name=HG003_chrY_T0001216;gene_name=ENSG00000286009;ID=intron:HG003_chrY_T0001216:0;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13525138	13525363	.	-	.	source_transcript=ENST00000662422.2;source_transcript_name=ENST00000662422;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662422.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000662422.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000662422.2,ENST00000662422.2;transcript_id=HG003_chrY_T0001216;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001216;transcript_name=HG003_chrY_T0001216;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001216:1;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525364	13525915	.	-	.	source_transcript=ENST00000662422.2;source_transcript_name=ENST00000662422;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662422.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000662422.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000662422.2,ENST00000662422.2;transcript_id=HG003_chrY_T0001216;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001216;transcript_name=HG003_chrY_T0001216;gene_name=ENSG00000286009;ID=intron:HG003_chrY_T0001216:1;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13525916	13526118	.	-	.	source_transcript=ENST00000662422.2;source_transcript_name=ENST00000662422;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662422.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000662422.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000662422.2,ENST00000662422.2;transcript_id=HG003_chrY_T0001216;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001216;transcript_name=HG003_chrY_T0001216;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001216:2;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13523928	13526086	1000	-	.	source_transcript=ENST00000651143.2;source_transcript_name=ENST00000651143;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651143.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651143.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000651143.2,ENST00000651143.2;transcript_id=HG003_chrY_T0001217;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_G0000405;transcript_name=HG003_chrY_T0001217;gene_name=ENSG00000286009;ID=HG003_chrY_T0001217;Name=ENSG00000286009
HG003_chrY	CAT	exon	13523928	13524737	.	-	.	source_transcript=ENST00000651143.2;source_transcript_name=ENST00000651143;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651143.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651143.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000651143.2,ENST00000651143.2;transcript_id=HG003_chrY_T0001217;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001217;transcript_name=HG003_chrY_T0001217;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001217:0;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13524738	13525268	.	-	.	source_transcript=ENST00000651143.2;source_transcript_name=ENST00000651143;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651143.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651143.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000651143.2,ENST00000651143.2;transcript_id=HG003_chrY_T0001217;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001217;transcript_name=HG003_chrY_T0001217;gene_name=ENSG00000286009;ID=intron:HG003_chrY_T0001217:0;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13525269	13525363	.	-	.	source_transcript=ENST00000651143.2;source_transcript_name=ENST00000651143;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651143.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651143.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000651143.2,ENST00000651143.2;transcript_id=HG003_chrY_T0001217;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001217;transcript_name=HG003_chrY_T0001217;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001217:1;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525364	13525915	.	-	.	source_transcript=ENST00000651143.2;source_transcript_name=ENST00000651143;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651143.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651143.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000651143.2,ENST00000651143.2;transcript_id=HG003_chrY_T0001217;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001217;transcript_name=HG003_chrY_T0001217;gene_name=ENSG00000286009;ID=intron:HG003_chrY_T0001217:1;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13525916	13526086	.	-	.	source_transcript=ENST00000651143.2;source_transcript_name=ENST00000651143;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651143.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651143.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000651143.2,ENST00000651143.2;transcript_id=HG003_chrY_T0001217;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001217;transcript_name=HG003_chrY_T0001217;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001217:2;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13523928	13526090	1000	-	.	source_transcript=ENST00000656670.1;source_transcript_name=ENST00000656670;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000656670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000656670.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000656670.1,ENST00000656670.1;transcript_id=HG003_chrY_T0001218;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_G0000405;transcript_name=HG003_chrY_T0001218;gene_name=ENSG00000286009;ID=HG003_chrY_T0001218;Name=ENSG00000286009
HG003_chrY	CAT	exon	13523928	13524737	.	-	.	source_transcript=ENST00000656670.1;source_transcript_name=ENST00000656670;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000656670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000656670.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000656670.1,ENST00000656670.1;transcript_id=HG003_chrY_T0001218;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001218;transcript_name=HG003_chrY_T0001218;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001218:0;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13524738	13525268	.	-	.	source_transcript=ENST00000656670.1;source_transcript_name=ENST00000656670;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000656670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000656670.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000656670.1,ENST00000656670.1;transcript_id=HG003_chrY_T0001218;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001218;transcript_name=HG003_chrY_T0001218;gene_name=ENSG00000286009;ID=intron:HG003_chrY_T0001218:0;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13525269	13525363	.	-	.	source_transcript=ENST00000656670.1;source_transcript_name=ENST00000656670;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000656670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000656670.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000656670.1,ENST00000656670.1;transcript_id=HG003_chrY_T0001218;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001218;transcript_name=HG003_chrY_T0001218;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001218:1;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525364	13525972	.	-	.	source_transcript=ENST00000656670.1;source_transcript_name=ENST00000656670;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000656670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000656670.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000656670.1,ENST00000656670.1;transcript_id=HG003_chrY_T0001218;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001218;transcript_name=HG003_chrY_T0001218;gene_name=ENSG00000286009;ID=intron:HG003_chrY_T0001218:1;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13525973	13526090	.	-	.	source_transcript=ENST00000656670.1;source_transcript_name=ENST00000656670;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000656670.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000656670.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000656670.1,ENST00000656670.1;transcript_id=HG003_chrY_T0001218;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001218;transcript_name=HG003_chrY_T0001218;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001218:2;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13523928	13526152	1000	-	.	source_transcript=ENST00000826919.1;source_transcript_name=ENST00000826919;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000826919.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000826919.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000826919.1,ENST00000826919.1;transcript_id=HG003_chrY_T0001219;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_G0000405;transcript_name=HG003_chrY_T0001219;gene_name=ENSG00000286009;ID=HG003_chrY_T0001219;Name=ENSG00000286009
HG003_chrY	CAT	exon	13523928	13524737	.	-	.	source_transcript=ENST00000826919.1;source_transcript_name=ENST00000826919;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000826919.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000826919.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000826919.1,ENST00000826919.1;transcript_id=HG003_chrY_T0001219;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001219;transcript_name=HG003_chrY_T0001219;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001219:0;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13524738	13525137	.	-	.	source_transcript=ENST00000826919.1;source_transcript_name=ENST00000826919;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000826919.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000826919.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000826919.1,ENST00000826919.1;transcript_id=HG003_chrY_T0001219;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001219;transcript_name=HG003_chrY_T0001219;gene_name=ENSG00000286009;ID=intron:HG003_chrY_T0001219:0;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13525138	13525363	.	-	.	source_transcript=ENST00000826919.1;source_transcript_name=ENST00000826919;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000826919.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000826919.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000826919.1,ENST00000826919.1;transcript_id=HG003_chrY_T0001219;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001219;transcript_name=HG003_chrY_T0001219;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001219:1;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13525364	13525972	.	-	.	source_transcript=ENST00000826919.1;source_transcript_name=ENST00000826919;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000826919.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000826919.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000826919.1,ENST00000826919.1;transcript_id=HG003_chrY_T0001219;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001219;transcript_name=HG003_chrY_T0001219;gene_name=ENSG00000286009;ID=intron:HG003_chrY_T0001219:1;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13525973	13526152	.	-	.	source_transcript=ENST00000826919.1;source_transcript_name=ENST00000826919;source_gene=ENSG00000286009.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286009.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000826919.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000826919.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286009;alternative_source_transcripts=ENST00000826919.1,ENST00000826919.1;transcript_id=HG003_chrY_T0001219;gene_id=HG003_chrY_G0000405;Parent=HG003_chrY_T0001219;transcript_name=HG003_chrY_T0001219;gene_name=ENSG00000286009;ID=exon:HG003_chrY_T0001219:2;Name=ENSG00000286009;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13664587	13666444	.	-	.	source_gene_common_name=CDY4P;source_gene=ENSG00000228411.1;alternative_source_transcripts=ENST00000418290.1,ENST00000418290.1;gene_id=HG003_chrY_G0000406;gene_biotype=processed_pseudogene;gene_name=CDY4P;gene_sources=liftoff;ID=HG003_chrY_G0000406;Name=CDY4P
HG003_chrY	CAT	transcript	13664587	13666444	1000	-	.	source_transcript=ENST00000418290.1;source_transcript_name=CDY4P-201;source_gene=ENSG00000228411.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228411.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000418290.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418290.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY4P;alternative_source_transcripts=ENST00000418290.1,ENST00000418290.1;transcript_id=HG003_chrY_T0001226;gene_id=HG003_chrY_G0000406;Parent=HG003_chrY_G0000406;transcript_name=HG003_chrY_T0001226;gene_name=CDY4P;ID=HG003_chrY_T0001226;Name=CDY4P
HG003_chrY	CAT	exon	13664587	13665330	.	-	.	source_transcript=ENST00000418290.1;source_transcript_name=CDY4P-201;source_gene=ENSG00000228411.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228411.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000418290.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418290.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY4P;alternative_source_transcripts=ENST00000418290.1,ENST00000418290.1;transcript_id=HG003_chrY_T0001226;gene_id=HG003_chrY_G0000406;Parent=HG003_chrY_T0001226;transcript_name=HG003_chrY_T0001226;gene_name=CDY4P;ID=exon:HG003_chrY_T0001226:0;Name=CDY4P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13665331	13665675	.	-	.	source_transcript=ENST00000418290.1;source_transcript_name=CDY4P-201;source_gene=ENSG00000228411.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228411.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000418290.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418290.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY4P;alternative_source_transcripts=ENST00000418290.1,ENST00000418290.1;transcript_id=HG003_chrY_T0001226;gene_id=HG003_chrY_G0000406;Parent=HG003_chrY_T0001226;transcript_name=HG003_chrY_T0001226;gene_name=CDY4P;ID=intron:HG003_chrY_T0001226:0;Name=CDY4P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13665676	13666444	.	-	.	source_transcript=ENST00000418290.1;source_transcript_name=CDY4P-201;source_gene=ENSG00000228411.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228411.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000418290.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418290.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY4P;alternative_source_transcripts=ENST00000418290.1,ENST00000418290.1;transcript_id=HG003_chrY_T0001226;gene_id=HG003_chrY_G0000406;Parent=HG003_chrY_T0001226;transcript_name=HG003_chrY_T0001226;gene_name=CDY4P;ID=exon:HG003_chrY_T0001226:1;Name=CDY4P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13766714	13783084	.	+	.	source_gene_common_name=DDX3Y;source_gene=ENSG00000067048.17;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;gene_id=HG003_chrY_G0000407;gene_biotype=protein_coding;gene_name=DDX3Y;gene_sources=liftoff;ID=HG003_chrY_G0000407;Name=DDX3Y
HG003_chrY	CAT	transcript	13766714	13781145	100	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_G0000407;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=HG003_chrY_T0001229;Name=DDX3Y
HG003_chrY	CAT	exon	13766714	13767020	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13767021	13767540	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13767541	13767587	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13767543	13767587	.	+	0	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	13767543	13767545	.	+	0	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=start_codon:HG003_chrY_T0001229;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13767588	13770142	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13770143	13770200	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13770143	13770200	.	+	0	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772013	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13771966	13772013	.	+	2	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13772014	13774444	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13774445	13774574	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13774445	13774574	.	+	2	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13774575	13775332	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775333	13775488	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13775333	13775488	.	+	1	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775489	13775568	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775569	13775668	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13775569	13775668	.	+	1	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13776324	13776459	.	+	0	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777255	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13777170	13777255	.	+	2	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777256	13777489	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777490	13777588	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13777490	13777588	.	+	0	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777589	13777672	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777673	13777833	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13777673	13777833	.	+	0	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777834	13778235	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778236	13778380	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13778236	13778380	.	+	1	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778381	13778488	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778489	13778633	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13778489	13778633	.	+	0	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778634	13778866	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778867	13779048	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13778867	13779048	.	+	2	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779049	13779122	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779123	13779240	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:14;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13779123	13779240	.	+	0	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779241	13779512	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:14;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779513	13779666	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:15;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13779513	13779666	.	+	2	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:14;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779667	13780008	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:15;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780009	13780148	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:16;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13780009	13780148	.	+	1	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:15;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13780149	13780648	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001229:16;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780649	13781145	.	+	.	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001229:17;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13780649	13780728	.	+	2	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001229:16;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	13780726	13780728	.	+	0	source_transcript=ENST00000360160.8;source_transcript_name=DDX3Y-202;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000360160.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000360160.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000360160.8,ENST00000360160.8;transcript_id=HG003_chrY_T0001229;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001229;transcript_name=HG003_chrY_T0001229;gene_name=DDX3Y;ID=stop_codon:HG003_chrY_T0001229;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13766724	13776459	100	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_G0000407;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=HG003_chrY_T0001230;Name=DDX3Y
HG003_chrY	CAT	exon	13766724	13767020	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001230:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13767021	13767463	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001230:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13767464	13767587	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001230:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13767543	13767587	.	+	0	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001230:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	13767543	13767545	.	+	0	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=start_codon:HG003_chrY_T0001230;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13767588	13770142	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001230:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13770143	13770200	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001230:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13770143	13770200	.	+	0	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001230:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001230:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772013	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001230:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13771966	13772013	.	+	2	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001230:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13772014	13774444	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001230:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13774445	13774574	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001230:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13774445	13774574	.	+	2	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001230:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13774575	13775332	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001230:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775333	13775488	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001230:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13775333	13775488	.	+	1	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001230:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775489	13775568	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001230:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775569	13775668	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001230:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13775569	13775668	.	+	1	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001230:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001230:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001230:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13776324	13776459	.	+	0	source_transcript=ENST00000454054.5;source_transcript_name=DDX3Y-204;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454054.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000454054.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000454054.5,ENST00000454054.5;transcript_id=HG003_chrY_T0001230;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001230;transcript_name=HG003_chrY_T0001230;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001230:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13767455	13772302	1000	+	.	source_transcript=ENST00000493363.1;source_transcript_name=DDX3Y-208;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000493363.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000493363.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000493363.1,ENST00000493363.1;transcript_id=HG003_chrY_T0001231;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_G0000407;transcript_name=HG003_chrY_T0001231;gene_name=DDX3Y;ID=HG003_chrY_T0001231;Name=DDX3Y
HG003_chrY	CAT	exon	13767455	13767587	.	+	.	source_transcript=ENST00000493363.1;source_transcript_name=DDX3Y-208;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000493363.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000493363.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000493363.1,ENST00000493363.1;transcript_id=HG003_chrY_T0001231;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001231;transcript_name=HG003_chrY_T0001231;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001231:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13767588	13770142	.	+	.	source_transcript=ENST00000493363.1;source_transcript_name=DDX3Y-208;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000493363.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000493363.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000493363.1,ENST00000493363.1;transcript_id=HG003_chrY_T0001231;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001231;transcript_name=HG003_chrY_T0001231;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001231:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13770143	13770200	.	+	.	source_transcript=ENST00000493363.1;source_transcript_name=DDX3Y-208;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000493363.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000493363.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000493363.1,ENST00000493363.1;transcript_id=HG003_chrY_T0001231;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001231;transcript_name=HG003_chrY_T0001231;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001231:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=ENST00000493363.1;source_transcript_name=DDX3Y-208;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000493363.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000493363.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000493363.1,ENST00000493363.1;transcript_id=HG003_chrY_T0001231;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001231;transcript_name=HG003_chrY_T0001231;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001231:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772302	.	+	.	source_transcript=ENST00000493363.1;source_transcript_name=DDX3Y-208;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000493363.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000493363.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000493363.1,ENST00000493363.1;transcript_id=HG003_chrY_T0001231;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001231;transcript_name=HG003_chrY_T0001231;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001231:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13767474	13783084	100	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_G0000407;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=HG003_chrY_T0001232;Name=DDX3Y
HG003_chrY	CAT	exon	13767474	13767587	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13767543	13767587	.	+	0	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	13767543	13767545	.	+	0	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=start_codon:HG003_chrY_T0001232;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13767588	13770142	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13770143	13770200	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13770143	13770200	.	+	0	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772013	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13771966	13772013	.	+	2	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13772014	13774444	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13774445	13774574	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13774445	13774574	.	+	2	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13774575	13775332	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775333	13775488	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13775333	13775488	.	+	1	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775489	13775568	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775569	13775668	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13775569	13775668	.	+	1	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13776324	13776459	.	+	0	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777255	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13777170	13777255	.	+	2	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777256	13777489	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777490	13777588	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13777490	13777588	.	+	0	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777589	13777672	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:8;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777673	13777833	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13777673	13777833	.	+	0	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777834	13778235	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:9;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778236	13778380	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13778236	13778380	.	+	1	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778381	13778488	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:10;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778489	13778633	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13778489	13778633	.	+	0	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778634	13778866	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:11;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778867	13779048	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13778867	13779048	.	+	2	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779049	13779122	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:12;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779123	13779240	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13779123	13779240	.	+	0	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779241	13779512	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:13;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13779513	13779666	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:14;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13779513	13779666	.	+	2	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:14;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13779667	13780008	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:14;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780009	13780148	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:15;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13780009	13780148	.	+	1	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:15;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13780149	13780648	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001232:15;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13780649	13783084	.	+	.	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001232:16;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13780649	13780728	.	+	2	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001232:16;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	13780726	13780728	.	+	0	source_transcript=ENST00000336079.8;source_transcript_name=DDX3Y-201;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000336079.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000336079.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000336079.8,ENST00000336079.8;transcript_id=HG003_chrY_T0001232;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001232;transcript_name=HG003_chrY_T0001232;gene_name=DDX3Y;ID=stop_codon:HG003_chrY_T0001232;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13768344	13777255	100	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_G0000407;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=HG003_chrY_T0001233;Name=DDX3Y
HG003_chrY	CAT	exon	13768344	13768421	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001233:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13768386	13768421	.	+	0	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001233:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	13768386	13768388	.	+	0	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=start_codon:HG003_chrY_T0001233;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13768422	13770142	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001233:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13770143	13770200	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001233:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13770143	13770200	.	+	0	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001233:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13770201	13771965	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001233:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13771966	13772013	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001233:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13771966	13772013	.	+	2	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001233:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13772014	13774444	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001233:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13774445	13774574	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001233:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13774445	13774574	.	+	2	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001233:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13774575	13775332	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001233:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775333	13775488	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001233:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13775333	13775488	.	+	1	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001233:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775489	13775568	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001233:4;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13775569	13775668	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001233:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13775569	13775668	.	+	1	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001233:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001233:5;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001233:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13776324	13776459	.	+	0	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001233:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001233:6;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777255	.	+	.	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001233:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	13777170	13777255	.	+	2	source_transcript=ENST00000440554.1;source_transcript_name=DDX3Y-203;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440554.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000440554.1,ENST00000440554.1;transcript_id=HG003_chrY_T0001233;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001233;transcript_name=HG003_chrY_T0001233;gene_name=DDX3Y;ID=CDS:HG003_chrY_T0001233:7;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13775246	13776407	1000	+	.	source_transcript=ENST00000469101.1;source_transcript_name=DDX3Y-206;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469101.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469101.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000469101.1,ENST00000469101.1;transcript_id=HG003_chrY_T0001234;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_G0000407;transcript_name=HG003_chrY_T0001234;gene_name=DDX3Y;ID=HG003_chrY_T0001234;Name=DDX3Y
HG003_chrY	CAT	exon	13775246	13775668	.	+	.	source_transcript=ENST00000469101.1;source_transcript_name=DDX3Y-206;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469101.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469101.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000469101.1,ENST00000469101.1;transcript_id=HG003_chrY_T0001234;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001234;transcript_name=HG003_chrY_T0001234;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001234:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=ENST00000469101.1;source_transcript_name=DDX3Y-206;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469101.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469101.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000469101.1,ENST00000469101.1;transcript_id=HG003_chrY_T0001234;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001234;transcript_name=HG003_chrY_T0001234;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001234:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776407	.	+	.	source_transcript=ENST00000469101.1;source_transcript_name=DDX3Y-206;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000469101.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000469101.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000469101.1,ENST00000469101.1;transcript_id=HG003_chrY_T0001234;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001234;transcript_name=HG003_chrY_T0001234;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001234:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13775569	13777505	1000	+	.	source_transcript=ENST00000472510.5;source_transcript_name=DDX3Y-207;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000472510.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472510.5;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000472510.5,ENST00000472510.5;transcript_id=HG003_chrY_T0001235;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_G0000407;transcript_name=HG003_chrY_T0001235;gene_name=DDX3Y;ID=HG003_chrY_T0001235;Name=DDX3Y
HG003_chrY	CAT	exon	13775569	13775668	.	+	.	source_transcript=ENST00000472510.5;source_transcript_name=DDX3Y-207;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000472510.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472510.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000472510.5,ENST00000472510.5;transcript_id=HG003_chrY_T0001235;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001235;transcript_name=HG003_chrY_T0001235;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001235:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=ENST00000472510.5;source_transcript_name=DDX3Y-207;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000472510.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472510.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000472510.5,ENST00000472510.5;transcript_id=HG003_chrY_T0001235;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001235;transcript_name=HG003_chrY_T0001235;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001235:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=ENST00000472510.5;source_transcript_name=DDX3Y-207;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000472510.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472510.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000472510.5,ENST00000472510.5;transcript_id=HG003_chrY_T0001235;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001235;transcript_name=HG003_chrY_T0001235;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001235:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=ENST00000472510.5;source_transcript_name=DDX3Y-207;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000472510.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472510.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000472510.5,ENST00000472510.5;transcript_id=HG003_chrY_T0001235;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001235;transcript_name=HG003_chrY_T0001235;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001235:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777505	.	+	.	source_transcript=ENST00000472510.5;source_transcript_name=DDX3Y-207;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000472510.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472510.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000472510.5,ENST00000472510.5;transcript_id=HG003_chrY_T0001235;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001235;transcript_name=HG003_chrY_T0001235;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001235:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13775614	13777833	1000	+	.	source_transcript=ENST00000463199.1;source_transcript_name=DDX3Y-205;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000463199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000463199.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000463199.1,ENST00000463199.1;transcript_id=HG003_chrY_T0001236;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_G0000407;transcript_name=HG003_chrY_T0001236;gene_name=DDX3Y;ID=HG003_chrY_T0001236;Name=DDX3Y
HG003_chrY	CAT	exon	13775614	13775668	.	+	.	source_transcript=ENST00000463199.1;source_transcript_name=DDX3Y-205;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000463199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000463199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000463199.1,ENST00000463199.1;transcript_id=HG003_chrY_T0001236;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001236;transcript_name=HG003_chrY_T0001236;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001236:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13775669	13776323	.	+	.	source_transcript=ENST00000463199.1;source_transcript_name=DDX3Y-205;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000463199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000463199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000463199.1,ENST00000463199.1;transcript_id=HG003_chrY_T0001236;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001236;transcript_name=HG003_chrY_T0001236;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001236:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13776324	13776459	.	+	.	source_transcript=ENST00000463199.1;source_transcript_name=DDX3Y-205;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000463199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000463199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000463199.1,ENST00000463199.1;transcript_id=HG003_chrY_T0001236;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001236;transcript_name=HG003_chrY_T0001236;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001236:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13776460	13777169	.	+	.	source_transcript=ENST00000463199.1;source_transcript_name=DDX3Y-205;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000463199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000463199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000463199.1,ENST00000463199.1;transcript_id=HG003_chrY_T0001236;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001236;transcript_name=HG003_chrY_T0001236;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001236:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777170	13777255	.	+	.	source_transcript=ENST00000463199.1;source_transcript_name=DDX3Y-205;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000463199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000463199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000463199.1,ENST00000463199.1;transcript_id=HG003_chrY_T0001236;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001236;transcript_name=HG003_chrY_T0001236;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001236:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13777256	13777489	.	+	.	source_transcript=ENST00000463199.1;source_transcript_name=DDX3Y-205;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000463199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000463199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000463199.1,ENST00000463199.1;transcript_id=HG003_chrY_T0001236;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001236;transcript_name=HG003_chrY_T0001236;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001236:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13777490	13777833	.	+	.	source_transcript=ENST00000463199.1;source_transcript_name=DDX3Y-205;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000463199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000463199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000463199.1,ENST00000463199.1;transcript_id=HG003_chrY_T0001236;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001236;transcript_name=HG003_chrY_T0001236;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001236:3;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	13778102	13778959	1000	+	.	source_transcript=ENST00000495478.1;source_transcript_name=DDX3Y-209;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495478.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000495478.1,ENST00000495478.1;transcript_id=HG003_chrY_T0001237;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_G0000407;transcript_name=HG003_chrY_T0001237;gene_name=DDX3Y;ID=HG003_chrY_T0001237;Name=DDX3Y
HG003_chrY	CAT	exon	13778102	13778380	.	+	.	source_transcript=ENST00000495478.1;source_transcript_name=DDX3Y-209;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495478.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000495478.1,ENST00000495478.1;transcript_id=HG003_chrY_T0001237;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001237;transcript_name=HG003_chrY_T0001237;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001237:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778381	13778488	.	+	.	source_transcript=ENST00000495478.1;source_transcript_name=DDX3Y-209;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495478.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000495478.1,ENST00000495478.1;transcript_id=HG003_chrY_T0001237;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001237;transcript_name=HG003_chrY_T0001237;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001237:0;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778489	13778633	.	+	.	source_transcript=ENST00000495478.1;source_transcript_name=DDX3Y-209;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495478.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000495478.1,ENST00000495478.1;transcript_id=HG003_chrY_T0001237;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001237;transcript_name=HG003_chrY_T0001237;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001237:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13778634	13778866	.	+	.	source_transcript=ENST00000495478.1;source_transcript_name=DDX3Y-209;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495478.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000495478.1,ENST00000495478.1;transcript_id=HG003_chrY_T0001237;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001237;transcript_name=HG003_chrY_T0001237;gene_name=DDX3Y;ID=intron:HG003_chrY_T0001237:1;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13778867	13778959	.	+	.	source_transcript=ENST00000495478.1;source_transcript_name=DDX3Y-209;source_gene=ENSG00000067048.17;source_gene_biotype=protein_coding;original_gene_id=ENSG00000067048.17;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000495478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000495478.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX3Y;alternative_source_transcripts=ENST00000495478.1,ENST00000495478.1;transcript_id=HG003_chrY_T0001237;gene_id=HG003_chrY_G0000407;Parent=HG003_chrY_T0001237;transcript_name=HG003_chrY_T0001237;gene_name=DDX3Y;ID=exon:HG003_chrY_T0001237:2;Name=DDX3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13792771	13810787	.	-	.	source_gene_common_name=CASKP1;source_gene=ENSG00000234059.1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;gene_id=HG003_chrY_G0000408;gene_biotype=unprocessed_pseudogene;gene_name=CASKP1;gene_sources=liftoff;ID=HG003_chrY_G0000408;Name=CASKP1
HG003_chrY	CAT	transcript	13792771	13810787	1000	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_G0000408;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=HG003_chrY_T0001238;Name=CASKP1
HG003_chrY	CAT	exon	13792771	13792933	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=exon:HG003_chrY_T0001238:0;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13792934	13797807	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=intron:HG003_chrY_T0001238:0;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13797808	13797892	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=exon:HG003_chrY_T0001238:1;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13797893	13808224	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=intron:HG003_chrY_T0001238:1;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13808225	13808268	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=exon:HG003_chrY_T0001238:2;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13808269	13808493	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=intron:HG003_chrY_T0001238:2;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13808494	13808528	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=exon:HG003_chrY_T0001238:3;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13808529	13808629	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=intron:HG003_chrY_T0001238:3;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13808630	13808677	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=exon:HG003_chrY_T0001238:4;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13808678	13808892	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=intron:HG003_chrY_T0001238:4;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13808893	13808912	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=exon:HG003_chrY_T0001238:5;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13808913	13810279	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=intron:HG003_chrY_T0001238:5;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13810280	13810383	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=exon:HG003_chrY_T0001238:6;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13810384	13810704	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=intron:HG003_chrY_T0001238:6;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13810705	13810787	.	-	.	source_transcript=ENST00000412870.1;source_transcript_name=CASKP1-201;source_gene=ENSG00000234059.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234059.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412870.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412870.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CASKP1;alternative_source_transcripts=ENST00000412870.1,ENST00000412870.1;transcript_id=HG003_chrY_T0001238;gene_id=HG003_chrY_G0000408;Parent=HG003_chrY_T0001238;transcript_name=HG003_chrY_T0001238;gene_name=CASKP1;ID=exon:HG003_chrY_T0001238:7;Name=CASKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	13946396	13958411	.	+	.	source_gene_common_name=SFPQP1;source_gene=ENSG00000224035.1;alternative_source_transcripts=ENST00000446621.1,ENST00000446621.1;gene_id=HG003_chrY_G0000409;gene_biotype=processed_pseudogene;gene_name=SFPQP1;gene_sources=liftoff;ID=HG003_chrY_G0000409;Name=SFPQP1
HG003_chrY	CAT	transcript	13946396	13958411	1000	+	.	source_transcript=ENST00000446621.1;source_transcript_name=SFPQP1-201;source_gene=ENSG00000224035.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224035.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000446621.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000446621.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SFPQP1;alternative_source_transcripts=ENST00000446621.1,ENST00000446621.1;transcript_id=HG003_chrY_T0001239;gene_id=HG003_chrY_G0000409;Parent=HG003_chrY_G0000409;transcript_name=HG003_chrY_T0001239;gene_name=SFPQP1;ID=HG003_chrY_T0001239;Name=SFPQP1
HG003_chrY	CAT	exon	13946396	13946950	.	+	.	source_transcript=ENST00000446621.1;source_transcript_name=SFPQP1-201;source_gene=ENSG00000224035.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224035.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000446621.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000446621.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SFPQP1;alternative_source_transcripts=ENST00000446621.1,ENST00000446621.1;transcript_id=HG003_chrY_T0001239;gene_id=HG003_chrY_G0000409;Parent=HG003_chrY_T0001239;transcript_name=HG003_chrY_T0001239;gene_name=SFPQP1;ID=exon:HG003_chrY_T0001239:0;Name=SFPQP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	13946951	13957180	.	+	.	source_transcript=ENST00000446621.1;source_transcript_name=SFPQP1-201;source_gene=ENSG00000224035.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224035.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000446621.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000446621.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SFPQP1;alternative_source_transcripts=ENST00000446621.1,ENST00000446621.1;transcript_id=HG003_chrY_T0001239;gene_id=HG003_chrY_G0000409;Parent=HG003_chrY_T0001239;transcript_name=HG003_chrY_T0001239;gene_name=SFPQP1;ID=intron:HG003_chrY_T0001239:0;Name=SFPQP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	13957181	13958411	.	+	.	source_transcript=ENST00000446621.1;source_transcript_name=SFPQP1-201;source_gene=ENSG00000224035.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224035.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000446621.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000446621.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SFPQP1;alternative_source_transcripts=ENST00000446621.1,ENST00000446621.1;transcript_id=HG003_chrY_T0001239;gene_id=HG003_chrY_G0000409;Parent=HG003_chrY_T0001239;transcript_name=HG003_chrY_T0001239;gene_name=SFPQP1;ID=exon:HG003_chrY_T0001239:1;Name=SFPQP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14014968	14023251	.	-	.	source_gene_common_name=TAB3P1;source_gene=ENSG00000235462.2;gene_id=HG003_chrY_G0000410;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TAB3P1;gene_sources=liftoff;ID=HG003_chrY_G0000410;Name=TAB3P1
HG003_chrY	CAT	transcript	14014968	14023251	1000	-	.	source_transcript=ENST00000452645.1;source_transcript_name=TAB3P1-201;source_gene=ENSG00000235462.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235462.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000452645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452645.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAB3P1;transcript_id=HG003_chrY_T0001240;gene_id=HG003_chrY_G0000410;Parent=HG003_chrY_G0000410;transcript_name=HG003_chrY_T0001240;gene_name=TAB3P1;ID=HG003_chrY_T0001240;Name=TAB3P1
HG003_chrY	CAT	exon	14014968	14015061	.	-	.	source_transcript=ENST00000452645.1;source_transcript_name=TAB3P1-201;source_gene=ENSG00000235462.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235462.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000452645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAB3P1;transcript_id=HG003_chrY_T0001240;gene_id=HG003_chrY_G0000410;Parent=HG003_chrY_T0001240;transcript_name=HG003_chrY_T0001240;gene_name=TAB3P1;ID=exon:HG003_chrY_T0001240:0;Name=TAB3P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14015062	14020992	.	-	.	source_transcript=ENST00000452645.1;source_transcript_name=TAB3P1-201;source_gene=ENSG00000235462.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235462.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000452645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAB3P1;transcript_id=HG003_chrY_T0001240;gene_id=HG003_chrY_G0000410;Parent=HG003_chrY_T0001240;transcript_name=HG003_chrY_T0001240;gene_name=TAB3P1;ID=intron:HG003_chrY_T0001240:0;Name=TAB3P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14020993	14021153	.	-	.	source_transcript=ENST00000452645.1;source_transcript_name=TAB3P1-201;source_gene=ENSG00000235462.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235462.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000452645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAB3P1;transcript_id=HG003_chrY_T0001240;gene_id=HG003_chrY_G0000410;Parent=HG003_chrY_T0001240;transcript_name=HG003_chrY_T0001240;gene_name=TAB3P1;ID=exon:HG003_chrY_T0001240:1;Name=TAB3P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14021154	14021872	.	-	.	source_transcript=ENST00000452645.1;source_transcript_name=TAB3P1-201;source_gene=ENSG00000235462.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235462.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000452645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAB3P1;transcript_id=HG003_chrY_T0001240;gene_id=HG003_chrY_G0000410;Parent=HG003_chrY_T0001240;transcript_name=HG003_chrY_T0001240;gene_name=TAB3P1;ID=intron:HG003_chrY_T0001240:1;Name=TAB3P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14021873	14023251	.	-	.	source_transcript=ENST00000452645.1;source_transcript_name=TAB3P1-201;source_gene=ENSG00000235462.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235462.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000452645.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452645.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAB3P1;transcript_id=HG003_chrY_T0001240;gene_id=HG003_chrY_G0000410;Parent=HG003_chrY_T0001240;transcript_name=HG003_chrY_T0001240;gene_name=TAB3P1;ID=exon:HG003_chrY_T0001240:2;Name=TAB3P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14020310	14022586	.	-	.	source_gene_common_name=ENSG00000290852;source_gene=ENSG00000290852.1;gene_id=HG003_chrY_G0000411;gene_biotype=lncRNA;gene_name=ENSG00000290852;gene_sources=liftoff;ID=HG003_chrY_G0000411;Name=ENSG00000290852
HG003_chrY	CAT	transcript	14020310	14022586	1000	-	.	source_transcript=ENST00000439217.1;source_transcript_name=ENST00000439217;source_gene=ENSG00000290852.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290852.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439217.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290852;transcript_id=HG003_chrY_T0001241;gene_id=HG003_chrY_G0000411;Parent=HG003_chrY_G0000411;transcript_name=HG003_chrY_T0001241;gene_name=ENSG00000290852;ID=HG003_chrY_T0001241;Name=ENSG00000290852
HG003_chrY	CAT	exon	14020310	14020506	.	-	.	source_transcript=ENST00000439217.1;source_transcript_name=ENST00000439217;source_gene=ENSG00000290852.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290852.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290852;transcript_id=HG003_chrY_T0001241;gene_id=HG003_chrY_G0000411;Parent=HG003_chrY_T0001241;transcript_name=HG003_chrY_T0001241;gene_name=ENSG00000290852;ID=exon:HG003_chrY_T0001241:0;Name=ENSG00000290852;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14020507	14021930	.	-	.	source_transcript=ENST00000439217.1;source_transcript_name=ENST00000439217;source_gene=ENSG00000290852.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290852.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290852;transcript_id=HG003_chrY_T0001241;gene_id=HG003_chrY_G0000411;Parent=HG003_chrY_T0001241;transcript_name=HG003_chrY_T0001241;gene_name=ENSG00000290852;ID=intron:HG003_chrY_T0001241:0;Name=ENSG00000290852;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14021931	14022586	.	-	.	source_transcript=ENST00000439217.1;source_transcript_name=ENST00000439217;source_gene=ENSG00000290852.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290852.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290852;transcript_id=HG003_chrY_T0001241;gene_id=HG003_chrY_G0000411;Parent=HG003_chrY_T0001241;transcript_name=HG003_chrY_T0001241;gene_name=ENSG00000290852;ID=exon:HG003_chrY_T0001241:1;Name=ENSG00000290852;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14091921	14092476	.	+	.	source_gene_common_name=DPPA2P1;source_gene=ENSG00000223915.1;alternative_source_transcripts=ENST00000428060.1,ENST00000428060.1;gene_id=HG003_chrY_G0000412;gene_biotype=processed_pseudogene;gene_name=DPPA2P1;gene_sources=liftoff;ID=HG003_chrY_G0000412;Name=DPPA2P1
HG003_chrY	CAT	transcript	14091921	14092476	1000	+	.	source_transcript=ENST00000428060.1;source_transcript_name=DPPA2P1-201;source_gene=ENSG00000223915.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000223915.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000428060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428060.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DPPA2P1;alternative_source_transcripts=ENST00000428060.1,ENST00000428060.1;transcript_id=HG003_chrY_T0001242;gene_id=HG003_chrY_G0000412;Parent=HG003_chrY_G0000412;transcript_name=HG003_chrY_T0001242;gene_name=DPPA2P1;ID=HG003_chrY_T0001242;Name=DPPA2P1
HG003_chrY	CAT	exon	14091921	14092476	.	+	.	source_transcript=ENST00000428060.1;source_transcript_name=DPPA2P1-201;source_gene=ENSG00000223915.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000223915.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000428060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428060.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DPPA2P1;alternative_source_transcripts=ENST00000428060.1,ENST00000428060.1;transcript_id=HG003_chrY_T0001242;gene_id=HG003_chrY_G0000412;Parent=HG003_chrY_T0001242;transcript_name=HG003_chrY_T0001242;gene_name=DPPA2P1;ID=exon:HG003_chrY_T0001242:0;Name=DPPA2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14095614	14341692	.	-	.	source_gene_common_name=UTY;source_gene=ENSG00000183878.16;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;gene_id=HG003_chrY_G0000413;gene_biotype=protein_coding;gene_name=UTY;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000413;Name=UTY
HG003_chrY	CAT	transcript	14095614	14340988	1000	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=HG003_chrY_T0001243;Name=UTY
HG003_chrY	CAT	exon	14095614	14095863	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14095614	14095863	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14095864	14112052	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14112053	14112223	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=intron:HG003_chrY_T0001243:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14340988	.	-	.	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=exon:HG003_chrY_T0001243:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=CDS:HG003_chrY_T0001243:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000682216.1;source_transcript_name=UTY-218;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682216.1,ENST00000682216.1;transcript_id=HG003_chrY_T0001243;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001243;transcript_name=HG003_chrY_T0001243;gene_name=UTY;ID=start_codon:HG003_chrY_T0001243;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14095617	14220821	1000	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=HG003_chrY_T0001244;Name=UTY
HG003_chrY	CAT	exon	14095617	14095863	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14095617	14095863	.	-	0	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14095864	14112052	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14112053	14112223	.	-	0	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14219498	14219653	.	-	0	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220121	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220122	14220256	.	-	0	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=intron:HG003_chrY_T0001244:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14220821	.	-	.	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=exon:HG003_chrY_T0001244:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14220821	.	-	0	source_transcript=ENST00000684226.1;source_transcript_name=UTY-221;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000684226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684226.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684226.1,ENST00000684226.1;transcript_id=HG003_chrY_T0001244;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001244;transcript_name=HG003_chrY_T0001244;gene_name=UTY;ID=CDS:HG003_chrY_T0001244:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14095618	14106402	1000	-	.	source_transcript=ENST00000684326.1;source_transcript_name=UTY-222;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000684326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684326.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684326.1,ENST00000684326.1;transcript_id=HG003_chrY_T0001245;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001245;gene_name=UTY;ID=HG003_chrY_T0001245;Name=UTY
HG003_chrY	CAT	exon	14095618	14095863	.	-	.	source_transcript=ENST00000684326.1;source_transcript_name=UTY-222;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000684326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684326.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684326.1,ENST00000684326.1;transcript_id=HG003_chrY_T0001245;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001245;transcript_name=HG003_chrY_T0001245;gene_name=UTY;ID=exon:HG003_chrY_T0001245:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14095864	14106250	.	-	.	source_transcript=ENST00000684326.1;source_transcript_name=UTY-222;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000684326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684326.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684326.1,ENST00000684326.1;transcript_id=HG003_chrY_T0001245;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001245;transcript_name=HG003_chrY_T0001245;gene_name=UTY;ID=intron:HG003_chrY_T0001245:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14106251	14106402	.	-	.	source_transcript=ENST00000684326.1;source_transcript_name=UTY-222;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000684326.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684326.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000684326.1,ENST00000684326.1;transcript_id=HG003_chrY_T0001245;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001245;transcript_name=HG003_chrY_T0001245;gene_name=UTY;ID=exon:HG003_chrY_T0001245:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14095636	14341021	1000	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=HG003_chrY_T0001246;Name=UTY
HG003_chrY	CAT	exon	14095636	14095863	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14095864	14112052	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167285	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14195251	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14195252	14195374	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14195254	14195374	.	-	1	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14195254	14195256	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001246;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14195375	14196596	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=intron:HG003_chrY_T0001246:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341021	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=exon:HG003_chrY_T0001246:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=CDS:HG003_chrY_T0001246:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=transMap;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682112.1;transcript_id=HG003_chrY_T0001246;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001246;transcript_name=HG003_chrY_T0001246;gene_name=UTY;ID=start_codon:HG003_chrY_T0001246;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14095636	14197163	1000	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=HG003_chrY_T0001247;Name=UTY
HG003_chrY	CAT	exon	14095636	14095863	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=exon:HG003_chrY_T0001247:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14095636	14095863	.	-	0	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=CDS:HG003_chrY_T0001247:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14095864	14121313	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=intron:HG003_chrY_T0001247:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=exon:HG003_chrY_T0001247:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=CDS:HG003_chrY_T0001247:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=intron:HG003_chrY_T0001247:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=exon:HG003_chrY_T0001247:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=CDS:HG003_chrY_T0001247:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=intron:HG003_chrY_T0001247:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=exon:HG003_chrY_T0001247:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=CDS:HG003_chrY_T0001247:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=intron:HG003_chrY_T0001247:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=exon:HG003_chrY_T0001247:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=CDS:HG003_chrY_T0001247:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=intron:HG003_chrY_T0001247:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=exon:HG003_chrY_T0001247:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=CDS:HG003_chrY_T0001247:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=intron:HG003_chrY_T0001247:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=exon:HG003_chrY_T0001247:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=CDS:HG003_chrY_T0001247:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=intron:HG003_chrY_T0001247:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=exon:HG003_chrY_T0001247:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=CDS:HG003_chrY_T0001247:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=intron:HG003_chrY_T0001247:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=exon:HG003_chrY_T0001247:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=CDS:HG003_chrY_T0001247:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=intron:HG003_chrY_T0001247:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=exon:HG003_chrY_T0001247:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=CDS:HG003_chrY_T0001247:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=intron:HG003_chrY_T0001247:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=exon:HG003_chrY_T0001247:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=CDS:HG003_chrY_T0001247:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=intron:HG003_chrY_T0001247:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197163	.	-	.	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=exon:HG003_chrY_T0001247:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197163	.	-	1	source_transcript=ENST00000682761.1;source_transcript_name=UTY-219;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=non_stop_decay;alignment_id=ENST00000682761.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682761.1;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682761.1,ENST00000682761.1;transcript_id=HG003_chrY_T0001247;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001247;transcript_name=HG003_chrY_T0001247;gene_name=UTY;ID=CDS:HG003_chrY_T0001247:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14095636	14341021	1000	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=HG003_chrY_T0001248;Name=UTY
HG003_chrY	CAT	exon	14095636	14095863	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14095864	14112052	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14195251	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14195252	14195374	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14195254	14195374	.	-	1	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14195254	14195256	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001248;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14195375	14196596	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=intron:HG003_chrY_T0001248:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341021	.	-	.	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=exon:HG003_chrY_T0001248:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=CDS:HG003_chrY_T0001248:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000682112.1;source_transcript_name=UTY-217;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000682112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682112.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;transcript_id=HG003_chrY_T0001248;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001248;transcript_name=HG003_chrY_T0001248;gene_name=UTY;ID=start_codon:HG003_chrY_T0001248;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109415	14341692	100	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=HG003_chrY_T0001249;Name=UTY
HG003_chrY	CAT	exon	14109415	14110918	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14110892	14110918	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14110892	14110894	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001249;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14112053	14112223	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=intron:HG003_chrY_T0001249:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341692	.	-	.	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=exon:HG003_chrY_T0001249:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=CDS:HG003_chrY_T0001249:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000331397.8;source_transcript_name=UTY-202;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331397.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331397.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000331397.8,ENST00000331397.8;transcript_id=HG003_chrY_T0001249;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001249;transcript_name=HG003_chrY_T0001249;gene_name=UTY;ID=start_codon:HG003_chrY_T0001249;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14109421	14341052	100	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=HG003_chrY_T0001250;Name=UTY
HG003_chrY	CAT	exon	14109421	14110918	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14110892	14110918	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14110892	14110894	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001250;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14112053	14112223	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14219498	14219653	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220121	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220122	14220256	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=intron:HG003_chrY_T0001250:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341052	.	-	.	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=exon:HG003_chrY_T0001250:29;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=CDS:HG003_chrY_T0001250:29;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000545955.6;source_transcript_name=UTY-212;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000545955.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000545955.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000545955.6,ENST00000545955.6;transcript_id=HG003_chrY_T0001250;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001250;transcript_name=HG003_chrY_T0001250;gene_name=UTY;ID=start_codon:HG003_chrY_T0001250;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14110178	14341010	100	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=HG003_chrY_T0001251;Name=UTY
HG003_chrY	CAT	exon	14110178	14110848	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14110822	14110848	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14110822	14110824	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001251;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110849	14112052	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14112053	14112223	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219587	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14219498	14219587	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219588	14220121	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220122	14220256	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=intron:HG003_chrY_T0001251:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341010	.	-	.	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=exon:HG003_chrY_T0001251:29;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=CDS:HG003_chrY_T0001251:29;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000382896.9;source_transcript_name=UTY-205;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382896.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000382896.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382896.9,ENST00000382896.9;transcript_id=HG003_chrY_T0001251;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001251;transcript_name=HG003_chrY_T0001251;gene_name=UTY;ID=start_codon:HG003_chrY_T0001251;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14110892	14340684	100	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=HG003_chrY_T0001252;Name=UTY
HG003_chrY	CAT	exon	14110892	14110918	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14110892	14110918	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14110892	14110894	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001252;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14121313	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220122	14220256	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=intron:HG003_chrY_T0001252:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14340684	.	-	.	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=exon:HG003_chrY_T0001252:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=CDS:HG003_chrY_T0001252:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000537580.6;source_transcript_name=UTY-209;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000537580.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000537580.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000537580.6,ENST00000537580.6;transcript_id=HG003_chrY_T0001252;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001252;transcript_name=HG003_chrY_T0001252;gene_name=UTY;ID=start_codon:HG003_chrY_T0001252;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14110892	14340684	100	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=HG003_chrY_T0001253;Name=UTY
HG003_chrY	CAT	exon	14110892	14110918	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14110892	14110918	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14110892	14110894	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001253;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14112053	14112223	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14215819	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14215820	14215867	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14215820	14215867	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14215868	14216036	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=intron:HG003_chrY_T0001253:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14340684	.	-	.	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=exon:HG003_chrY_T0001253:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=CDS:HG003_chrY_T0001253:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000538878.6;source_transcript_name=UTY-210;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000538878.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000538878.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000538878.6,ENST00000538878.6;transcript_id=HG003_chrY_T0001253;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001253;transcript_name=HG003_chrY_T0001253;gene_name=UTY;ID=start_codon:HG003_chrY_T0001253;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14110892	14340684	100	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=HG003_chrY_T0001254;Name=UTY
HG003_chrY	CAT	exon	14110892	14110918	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14110892	14110918	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14110892	14110894	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001254;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14112053	14112223	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219587	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14219498	14219587	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219588	14220121	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220122	14220256	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14227300	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=intron:HG003_chrY_T0001254:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14340684	.	-	.	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=exon:HG003_chrY_T0001254:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=CDS:HG003_chrY_T0001254:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000540140.6;source_transcript_name=UTY-211;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540140.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000540140.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000540140.6,ENST00000540140.6;transcript_id=HG003_chrY_T0001254;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001254;transcript_name=HG003_chrY_T0001254;gene_name=UTY;ID=start_codon:HG003_chrY_T0001254;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14110892	14340684	100	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=HG003_chrY_T0001255;Name=UTY
HG003_chrY	CAT	exon	14110892	14110918	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14110892	14110918	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14110892	14110894	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001255;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14112053	14112223	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167220	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220122	14220256	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=intron:HG003_chrY_T0001255:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14340684	.	-	.	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=exon:HG003_chrY_T0001255:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=CDS:HG003_chrY_T0001255:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000612274.5;source_transcript_name=UTY-213;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000612274.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000612274.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000612274.5,ENST00000612274.5;transcript_id=HG003_chrY_T0001255;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001255;transcript_name=HG003_chrY_T0001255;gene_name=UTY;ID=start_codon:HG003_chrY_T0001255;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14110892	14340684	100	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=HG003_chrY_T0001256;Name=UTY
HG003_chrY	CAT	exon	14110892	14110918	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14110892	14110918	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14110892	14110894	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001256;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14112053	14112223	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14219497	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14219498	14219653	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14219498	14219653	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219654	14220800	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=intron:HG003_chrY_T0001256:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14340684	.	-	.	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=exon:HG003_chrY_T0001256:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=CDS:HG003_chrY_T0001256:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000617789.5;source_transcript_name=UTY-214;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000617789.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000617789.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000617789.5,ENST00000617789.5;transcript_id=HG003_chrY_T0001256;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001256;transcript_name=HG003_chrY_T0001256;gene_name=UTY;ID=start_codon:HG003_chrY_T0001256;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14110892	14340684	100	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=HG003_chrY_T0001257;Name=UTY
HG003_chrY	CAT	exon	14110892	14110918	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14110892	14110918	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14110892	14110894	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001257;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14112053	14112223	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14272027	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14340272	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=intron:HG003_chrY_T0001257:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14340684	.	-	.	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=exon:HG003_chrY_T0001257:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=CDS:HG003_chrY_T0001257:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000618474.5;source_transcript_name=UTY-215;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618474.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000618474.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000618474.5,ENST00000618474.5;transcript_id=HG003_chrY_T0001257;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001257;transcript_name=HG003_chrY_T0001257;gene_name=UTY;ID=start_codon:HG003_chrY_T0001257;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14110892	14340684	100	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=HG003_chrY_T0001258;Name=UTY
HG003_chrY	CAT	exon	14110892	14110918	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14110892	14110918	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14110892	14110894	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001258;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14121313	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216408	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216409	14216432	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216409	14216432	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220122	14220256	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=intron:HG003_chrY_T0001258:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14340684	.	-	.	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=exon:HG003_chrY_T0001258:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=CDS:HG003_chrY_T0001258:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000624098.3;source_transcript_name=UTY-216;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000624098.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000624098.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000624098.3,ENST00000624098.3;transcript_id=HG003_chrY_T0001258;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001258;transcript_name=HG003_chrY_T0001258;gene_name=UTY;ID=start_codon:HG003_chrY_T0001258;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14110892	14340684	100	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=HG003_chrY_T0001259;Name=UTY
HG003_chrY	CAT	exon	14110892	14110918	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14110892	14110918	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14110892	14110894	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001259;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14110919	14112052	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14112053	14112223	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14112053	14112223	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14112224	14121313	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14121314	14121440	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14121314	14121440	.	-	1	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14121441	14158742	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14158743	14158884	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158743	14158884	.	-	2	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220121	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220122	14220256	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220122	14220256	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14220257	14220800	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:25;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:26;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=intron:HG003_chrY_T0001259:27;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14340684	.	-	.	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=exon:HG003_chrY_T0001259:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=CDS:HG003_chrY_T0001259:28;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000682913.1;source_transcript_name=UTY-220;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682913.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000682913.1,ENST00000682913.1;transcript_id=HG003_chrY_T0001259;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001259;transcript_name=HG003_chrY_T0001259;gene_name=UTY;ID=start_codon:HG003_chrY_T0001259;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14158477	14341689	100	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=HG003_chrY_T0001261;Name=UTY
HG003_chrY	CAT	exon	14158477	14158884	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14158739	14158884	.	-	2	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14158739	14158741	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001261;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14158885	14159992	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14159993	14160180	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14159993	14160180	.	-	1	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14160181	14163911	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14163912	14164026	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14163912	14164026	.	-	2	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14164027	14166433	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14166434	14166582	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14166434	14166582	.	-	1	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14166583	14167072	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167073	14167147	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167073	14167147	.	-	1	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167148	14167220	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14167221	14167285	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14167221	14167285	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14167286	14184588	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:20;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:21;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:22;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=intron:HG003_chrY_T0001261:23;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=exon:HG003_chrY_T0001261:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=CDS:HG003_chrY_T0001261:24;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000362096.8;source_transcript_name=UTY-203;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000362096.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000362096.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000362096.8,ENST00000362096.8;transcript_id=HG003_chrY_T0001261;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001261;transcript_name=HG003_chrY_T0001261;gene_name=UTY;ID=start_codon:HG003_chrY_T0001261;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14184068	14341689	100	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=HG003_chrY_T0001262;Name=UTY
HG003_chrY	CAT	exon	14184068	14184402	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184148	14184402	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14184148	14184150	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001262;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184403	14184588	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14184589	14184794	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14184589	14184794	.	-	2	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14184795	14185634	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14185635	14185740	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14185635	14185740	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14185741	14187254	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14187255	14187384	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14187255	14187384	.	-	1	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14187385	14196596	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14196597	14197369	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14196597	14197369	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14197370	14216036	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216037	14216432	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216037	14216432	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14216433	14216956	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14216957	14217052	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14216957	14217052	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14217053	14218910	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14218911	14219003	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14218911	14219003	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14219004	14220800	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14220801	14221020	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14220801	14221020	.	-	1	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221021	14221463	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14221464	14221562	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14221464	14221562	.	-	1	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14227301	14227427	.	-	2	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:10;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230290	14230383	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14254894	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:11;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14254895	14254929	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14254895	14254929	.	-	2	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:12;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:13;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:14;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:15;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:16;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:17;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=intron:HG003_chrY_T0001262:18;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14341689	.	-	.	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=exon:HG003_chrY_T0001262:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=CDS:HG003_chrY_T0001262:19;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000329134.9;source_transcript_name=UTY-201;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000329134.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000329134.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000329134.9,ENST00000329134.9;transcript_id=HG003_chrY_T0001262;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001262;transcript_name=HG003_chrY_T0001262;gene_name=UTY;ID=start_codon:HG003_chrY_T0001262;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14221522	14340559	1000	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=HG003_chrY_T0001263;Name=UTY
HG003_chrY	CAT	exon	14221522	14221562	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=exon:HG003_chrY_T0001263:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14221563	14227300	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=intron:HG003_chrY_T0001263:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14227301	14227427	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=exon:HG003_chrY_T0001263:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14227428	14230289	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=intron:HG003_chrY_T0001263:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14230290	14230383	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=exon:HG003_chrY_T0001263:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14230352	14230383	.	-	2	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=CDS:HG003_chrY_T0001263:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14230352	14230354	.	-	0	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001263;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14230384	14257953	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=intron:HG003_chrY_T0001263:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=exon:HG003_chrY_T0001263:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257954	14258008	.	-	0	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=CDS:HG003_chrY_T0001263:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=intron:HG003_chrY_T0001263:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=exon:HG003_chrY_T0001263:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=CDS:HG003_chrY_T0001263:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=intron:HG003_chrY_T0001263:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=exon:HG003_chrY_T0001263:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=CDS:HG003_chrY_T0001263:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=intron:HG003_chrY_T0001263:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=exon:HG003_chrY_T0001263:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=CDS:HG003_chrY_T0001263:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=intron:HG003_chrY_T0001263:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=exon:HG003_chrY_T0001263:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=CDS:HG003_chrY_T0001263:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=intron:HG003_chrY_T0001263:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=exon:HG003_chrY_T0001263:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=CDS:HG003_chrY_T0001263:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=intron:HG003_chrY_T0001263:8;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14340559	.	-	.	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=exon:HG003_chrY_T0001263:9;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340559	.	-	1	source_transcript=ENST00000478900.5;source_transcript_name=UTY-207;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000478900.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000478900.5;transcript_score=300.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000478900.5,ENST00000478900.5;transcript_id=HG003_chrY_T0001263;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001263;transcript_name=HG003_chrY_T0001263;gene_name=UTY;ID=CDS:HG003_chrY_T0001263:7;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14254188	14340523	1000	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=HG003_chrY_T0001264;Name=UTY
HG003_chrY	CAT	exon	14254188	14254929	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=exon:HG003_chrY_T0001264:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14254930	14257953	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=intron:HG003_chrY_T0001264:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14257954	14258008	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=exon:HG003_chrY_T0001264:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=intron:HG003_chrY_T0001264:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=exon:HG003_chrY_T0001264:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=intron:HG003_chrY_T0001264:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=exon:HG003_chrY_T0001264:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=intron:HG003_chrY_T0001264:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=exon:HG003_chrY_T0001264:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=intron:HG003_chrY_T0001264:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=exon:HG003_chrY_T0001264:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=intron:HG003_chrY_T0001264:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340523	.	-	.	source_transcript=ENST00000474365.1;source_transcript_name=UTY-206;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000474365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000474365.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000474365.1,ENST00000474365.1;transcript_id=HG003_chrY_T0001264;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001264;transcript_name=HG003_chrY_T0001264;gene_name=UTY;ID=exon:HG003_chrY_T0001264:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14257338	14340997	100	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=HG003_chrY_T0001265;Name=UTY
HG003_chrY	CAT	exon	14257338	14258008	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=exon:HG003_chrY_T0001265:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14257940	14258008	.	-	0	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=CDS:HG003_chrY_T0001265:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14257940	14257942	.	-	0	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=stop_codon:HG003_chrY_T0001265;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14258009	14272027	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=intron:HG003_chrY_T0001265:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14272028	14272148	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=exon:HG003_chrY_T0001265:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14272028	14272148	.	-	1	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=CDS:HG003_chrY_T0001265:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14272149	14275769	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=intron:HG003_chrY_T0001265:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14275770	14275828	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=exon:HG003_chrY_T0001265:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14275770	14275828	.	-	0	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=CDS:HG003_chrY_T0001265:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14275829	14310035	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=intron:HG003_chrY_T0001265:2;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14310036	14310085	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=exon:HG003_chrY_T0001265:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14310036	14310085	.	-	2	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=CDS:HG003_chrY_T0001265:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14310086	14331139	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=intron:HG003_chrY_T0001265:3;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14331140	14331248	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=exon:HG003_chrY_T0001265:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14331140	14331248	.	-	0	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=CDS:HG003_chrY_T0001265:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14331249	14340272	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=intron:HG003_chrY_T0001265:4;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340273	14340336	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=exon:HG003_chrY_T0001265:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340273	14340336	.	-	1	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=CDS:HG003_chrY_T0001265:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=intron:HG003_chrY_T0001265:5;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14340997	.	-	.	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=exon:HG003_chrY_T0001265:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14340533	14340684	.	-	0	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=CDS:HG003_chrY_T0001265:6;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14340682	14340684	.	-	0	source_transcript=ENST00000382893.2;source_transcript_name=UTY-204;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382893.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382893.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000382893.2,ENST00000382893.2;transcript_id=HG003_chrY_T0001265;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001265;transcript_name=HG003_chrY_T0001265;gene_name=UTY;ID=start_codon:HG003_chrY_T0001265;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14340061	14340942	1000	-	.	source_transcript=ENST00000479713.1;source_transcript_name=UTY-208;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000479713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000479713.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000479713.1,ENST00000479713.1;transcript_id=HG003_chrY_T0001266;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_G0000413;transcript_name=HG003_chrY_T0001266;gene_name=UTY;ID=HG003_chrY_T0001266;Name=UTY
HG003_chrY	CAT	exon	14340061	14340336	.	-	.	source_transcript=ENST00000479713.1;source_transcript_name=UTY-208;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000479713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000479713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000479713.1,ENST00000479713.1;transcript_id=HG003_chrY_T0001266;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001266;transcript_name=HG003_chrY_T0001266;gene_name=UTY;ID=exon:HG003_chrY_T0001266:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14340337	14340532	.	-	.	source_transcript=ENST00000479713.1;source_transcript_name=UTY-208;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000479713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000479713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000479713.1,ENST00000479713.1;transcript_id=HG003_chrY_T0001266;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001266;transcript_name=HG003_chrY_T0001266;gene_name=UTY;ID=intron:HG003_chrY_T0001266:0;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14340533	14340942	.	-	.	source_transcript=ENST00000479713.1;source_transcript_name=UTY-208;source_gene=ENSG00000183878.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183878.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000479713.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000479713.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UTY;alternative_source_transcripts=ENST00000479713.1,ENST00000479713.1;transcript_id=HG003_chrY_T0001266;gene_id=HG003_chrY_G0000413;Parent=HG003_chrY_T0001266;transcript_name=HG003_chrY_T0001266;gene_name=UTY;ID=exon:HG003_chrY_T0001266:1;Name=UTY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14147674	14148414	.	+	.	source_gene_common_name=PSMA6P1;source_gene=ENSG00000215414.4;alternative_source_transcripts=ENST00000400275.2,ENST00000400275.2;gene_id=HG003_chrY_G0000414;gene_biotype=processed_pseudogene;gene_name=PSMA6P1;gene_sources=liftoff;ID=HG003_chrY_G0000414;Name=PSMA6P1
HG003_chrY	CAT	transcript	14147674	14148414	1000	+	.	source_transcript=ENST00000400275.2;source_transcript_name=PSMA6P1-201;source_gene=ENSG00000215414.4;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000215414.4;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000400275.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000400275.2;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PSMA6P1;alternative_source_transcripts=ENST00000400275.2,ENST00000400275.2;transcript_id=HG003_chrY_T0001260;gene_id=HG003_chrY_G0000414;Parent=HG003_chrY_G0000414;transcript_name=HG003_chrY_T0001260;gene_name=PSMA6P1;ID=HG003_chrY_T0001260;Name=PSMA6P1
HG003_chrY	CAT	exon	14147674	14148414	.	+	.	source_transcript=ENST00000400275.2;source_transcript_name=PSMA6P1-201;source_gene=ENSG00000215414.4;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000215414.4;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000400275.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000400275.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PSMA6P1;alternative_source_transcripts=ENST00000400275.2,ENST00000400275.2;transcript_id=HG003_chrY_T0001260;gene_id=HG003_chrY_G0000414;Parent=HG003_chrY_T0001260;transcript_name=HG003_chrY_T0001260;gene_name=PSMA6P1;ID=exon:HG003_chrY_T0001260:0;Name=PSMA6P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14426928	14487266	.	+	.	source_gene_common_name=ENSG00000297994;source_gene=ENSG00000297994.1;alternative_source_transcripts=ENST00000752374.1,ENST00000752374.1;gene_id=HG003_chrY_G0000415;gene_biotype=lncRNA;gene_name=ENSG00000297994;gene_sources=liftoff;ID=HG003_chrY_G0000415;Name=ENSG00000297994
HG003_chrY	CAT	transcript	14426928	14487266	1000	+	.	source_transcript=ENST00000752374.1;source_transcript_name=ENST00000752374;source_gene=ENSG00000297994.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297994.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752374.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297994;alternative_source_transcripts=ENST00000752374.1,ENST00000752374.1;transcript_id=HG003_chrY_T0001267;gene_id=HG003_chrY_G0000415;Parent=HG003_chrY_G0000415;transcript_name=HG003_chrY_T0001267;gene_name=ENSG00000297994;ID=HG003_chrY_T0001267;Name=ENSG00000297994
HG003_chrY	CAT	exon	14426928	14426971	.	+	.	source_transcript=ENST00000752374.1;source_transcript_name=ENST00000752374;source_gene=ENSG00000297994.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297994.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297994;alternative_source_transcripts=ENST00000752374.1,ENST00000752374.1;transcript_id=HG003_chrY_T0001267;gene_id=HG003_chrY_G0000415;Parent=HG003_chrY_T0001267;transcript_name=HG003_chrY_T0001267;gene_name=ENSG00000297994;ID=exon:HG003_chrY_T0001267:0;Name=ENSG00000297994;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14426972	14427740	.	+	.	source_transcript=ENST00000752374.1;source_transcript_name=ENST00000752374;source_gene=ENSG00000297994.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297994.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297994;alternative_source_transcripts=ENST00000752374.1,ENST00000752374.1;transcript_id=HG003_chrY_T0001267;gene_id=HG003_chrY_G0000415;Parent=HG003_chrY_T0001267;transcript_name=HG003_chrY_T0001267;gene_name=ENSG00000297994;ID=intron:HG003_chrY_T0001267:0;Name=ENSG00000297994;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14427741	14427812	.	+	.	source_transcript=ENST00000752374.1;source_transcript_name=ENST00000752374;source_gene=ENSG00000297994.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297994.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297994;alternative_source_transcripts=ENST00000752374.1,ENST00000752374.1;transcript_id=HG003_chrY_T0001267;gene_id=HG003_chrY_G0000415;Parent=HG003_chrY_T0001267;transcript_name=HG003_chrY_T0001267;gene_name=ENSG00000297994;ID=exon:HG003_chrY_T0001267:1;Name=ENSG00000297994;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14427813	14486945	.	+	.	source_transcript=ENST00000752374.1;source_transcript_name=ENST00000752374;source_gene=ENSG00000297994.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297994.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297994;alternative_source_transcripts=ENST00000752374.1,ENST00000752374.1;transcript_id=HG003_chrY_T0001267;gene_id=HG003_chrY_G0000415;Parent=HG003_chrY_T0001267;transcript_name=HG003_chrY_T0001267;gene_name=ENSG00000297994;ID=intron:HG003_chrY_T0001267:1;Name=ENSG00000297994;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14486946	14487266	.	+	.	source_transcript=ENST00000752374.1;source_transcript_name=ENST00000752374;source_gene=ENSG00000297994.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297994.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297994;alternative_source_transcripts=ENST00000752374.1,ENST00000752374.1;transcript_id=HG003_chrY_T0001267;gene_id=HG003_chrY_G0000415;Parent=HG003_chrY_T0001267;transcript_name=HG003_chrY_T0001267;gene_name=ENSG00000297994;ID=exon:HG003_chrY_T0001267:2;Name=ENSG00000297994;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14564860	14566985	.	+	.	source_gene_common_name=TMSB4Y;source_gene=ENSG00000154620.6;alternative_source_transcripts=ENST00000284856.4,ENST00000284856.4;gene_id=HG003_chrY_G0000416;gene_biotype=protein_coding;gene_name=TMSB4Y;gene_sources=liftoff;ID=HG003_chrY_G0000416;Name=TMSB4Y
HG003_chrY	CAT	transcript	14564860	14566985	100	+	.	source_transcript=ENST00000284856.4;source_transcript_name=TMSB4Y-201;source_gene=ENSG00000154620.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000154620.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000284856.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000284856.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=ENST00000284856.4,ENST00000284856.4;transcript_id=HG003_chrY_T0001268;gene_id=HG003_chrY_G0000416;Parent=HG003_chrY_G0000416;transcript_name=HG003_chrY_T0001268;gene_name=TMSB4Y;ID=HG003_chrY_T0001268;Name=TMSB4Y
HG003_chrY	CAT	exon	14564860	14565396	.	+	.	source_transcript=ENST00000284856.4;source_transcript_name=TMSB4Y-201;source_gene=ENSG00000154620.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000154620.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000284856.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000284856.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=ENST00000284856.4,ENST00000284856.4;transcript_id=HG003_chrY_T0001268;gene_id=HG003_chrY_G0000416;Parent=HG003_chrY_T0001268;transcript_name=HG003_chrY_T0001268;gene_name=TMSB4Y;ID=exon:HG003_chrY_T0001268:0;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14565297	14565396	.	+	0	source_transcript=ENST00000284856.4;source_transcript_name=TMSB4Y-201;source_gene=ENSG00000154620.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000154620.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000284856.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000284856.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=ENST00000284856.4,ENST00000284856.4;transcript_id=HG003_chrY_T0001268;gene_id=HG003_chrY_G0000416;Parent=HG003_chrY_T0001268;transcript_name=HG003_chrY_T0001268;gene_name=TMSB4Y;ID=CDS:HG003_chrY_T0001268:0;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14565297	14565299	.	+	0	source_transcript=ENST00000284856.4;source_transcript_name=TMSB4Y-201;source_gene=ENSG00000154620.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000154620.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000284856.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000284856.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=ENST00000284856.4,ENST00000284856.4;transcript_id=HG003_chrY_T0001268;gene_id=HG003_chrY_G0000416;Parent=HG003_chrY_T0001268;transcript_name=HG003_chrY_T0001268;gene_name=TMSB4Y;ID=start_codon:HG003_chrY_T0001268;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14565397	14566185	.	+	.	source_transcript=ENST00000284856.4;source_transcript_name=TMSB4Y-201;source_gene=ENSG00000154620.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000154620.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000284856.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000284856.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=ENST00000284856.4,ENST00000284856.4;transcript_id=HG003_chrY_T0001268;gene_id=HG003_chrY_G0000416;Parent=HG003_chrY_T0001268;transcript_name=HG003_chrY_T0001268;gene_name=TMSB4Y;ID=intron:HG003_chrY_T0001268:0;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14566186	14566985	.	+	.	source_transcript=ENST00000284856.4;source_transcript_name=TMSB4Y-201;source_gene=ENSG00000154620.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000154620.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000284856.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000284856.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=ENST00000284856.4,ENST00000284856.4;transcript_id=HG003_chrY_T0001268;gene_id=HG003_chrY_G0000416;Parent=HG003_chrY_T0001268;transcript_name=HG003_chrY_T0001268;gene_name=TMSB4Y;ID=exon:HG003_chrY_T0001268:1;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14566186	14566220	.	+	2	source_transcript=ENST00000284856.4;source_transcript_name=TMSB4Y-201;source_gene=ENSG00000154620.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000154620.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000284856.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000284856.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=ENST00000284856.4,ENST00000284856.4;transcript_id=HG003_chrY_T0001268;gene_id=HG003_chrY_G0000416;Parent=HG003_chrY_T0001268;transcript_name=HG003_chrY_T0001268;gene_name=TMSB4Y;ID=CDS:HG003_chrY_T0001268:1;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14566218	14566220	.	+	0	source_transcript=ENST00000284856.4;source_transcript_name=TMSB4Y-201;source_gene=ENSG00000154620.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000154620.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000284856.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000284856.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMSB4Y;alternative_source_transcripts=ENST00000284856.4,ENST00000284856.4;transcript_id=HG003_chrY_T0001268;gene_id=HG003_chrY_G0000416;Parent=HG003_chrY_T0001268;transcript_name=HG003_chrY_T0001268;gene_name=TMSB4Y;ID=stop_codon:HG003_chrY_T0001268;Name=TMSB4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14564863	14777228	.	+	.	source_gene_common_name=ENSG00000290853;source_gene=ENSG00000290853.2;gene_id=HG003_chrY_G0000417;gene_biotype=lncRNA;gene_name=ENSG00000290853;gene_sources=liftoff;ID=HG003_chrY_G0000417;Name=ENSG00000290853
HG003_chrY	CAT	transcript	14564863	14749963	1000	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_G0000417;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=HG003_chrY_T0001269;Name=ENSG00000290853
HG003_chrY	CAT	exon	14564863	14565396	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001269:0;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14565397	14615596	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001269:0;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14615597	14615746	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001269:1;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14615747	14719499	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001269:1;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14719500	14719629	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001269:2;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14719630	14720650	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001269:2;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14720651	14720804	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001269:3;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14720805	14730049	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001269:3;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14730050	14730111	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001269:4;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14730112	14732615	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001269:4;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14732616	14732781	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001269:5;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14732782	14748240	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001269:5;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14748241	14749963	.	+	.	source_transcript=ENST00000652544.1;source_transcript_name=ENST00000652544;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001269;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001269;transcript_name=HG003_chrY_T0001269;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001269:6;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14614059	14732689	1000	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_G0000417;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=HG003_chrY_T0001271;Name=ENSG00000290853
HG003_chrY	CAT	exon	14614059	14614120	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001271:0;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14614121	14615596	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001271:0;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14615597	14615746	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001271:1;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14615747	14651875	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001271:1;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14651876	14651923	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001271:2;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14651924	14719499	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001271:2;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14719500	14719629	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001271:3;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14719630	14720650	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001271:3;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14720651	14720804	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001271:4;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14720805	14730049	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001271:4;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14730050	14730111	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001271:5;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14730112	14732615	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001271:5;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14732616	14732689	.	+	.	source_transcript=ENST00000460561.1;source_transcript_name=ENST00000460561;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000460561.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000460561.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001271;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001271;transcript_name=HG003_chrY_T0001271;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001271:6;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	14732665	14777228	1000	+	.	source_transcript=ENST00000766958.1;source_transcript_name=ENST00000766958;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766958.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001272;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_G0000417;transcript_name=HG003_chrY_T0001272;gene_name=ENSG00000290853;ID=HG003_chrY_T0001272;Name=ENSG00000290853
HG003_chrY	CAT	exon	14732665	14732781	.	+	.	source_transcript=ENST00000766958.1;source_transcript_name=ENST00000766958;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766958.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001272;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001272;transcript_name=HG003_chrY_T0001272;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001272:0;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14732782	14748240	.	+	.	source_transcript=ENST00000766958.1;source_transcript_name=ENST00000766958;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766958.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001272;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001272;transcript_name=HG003_chrY_T0001272;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001272:0;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14748241	14748446	.	+	.	source_transcript=ENST00000766958.1;source_transcript_name=ENST00000766958;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766958.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001272;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001272;transcript_name=HG003_chrY_T0001272;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001272:1;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14748447	14776749	.	+	.	source_transcript=ENST00000766958.1;source_transcript_name=ENST00000766958;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766958.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001272;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001272;transcript_name=HG003_chrY_T0001272;gene_name=ENSG00000290853;ID=intron:HG003_chrY_T0001272:1;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14776750	14777228	.	+	.	source_transcript=ENST00000766958.1;source_transcript_name=ENST00000766958;source_gene=ENSG00000290853.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290853.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766958.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290853;AdditionalSources=liftoff;transcript_id=HG003_chrY_T0001272;gene_id=HG003_chrY_G0000417;Parent=HG003_chrY_T0001272;transcript_name=HG003_chrY_T0001272;gene_name=ENSG00000290853;ID=exon:HG003_chrY_T0001272:2;Name=ENSG00000290853;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14612617	14776808	.	+	.	source_gene_common_name=ANOS2P;source_gene=ENSG00000241859.8;gene_id=HG003_chrY_G0000418;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ANOS2P;gene_sources=liftoff;ID=HG003_chrY_G0000418;Name=ANOS2P
HG003_chrY	CAT	transcript	14612617	14776808	1000	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_G0000418;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=HG003_chrY_T0001270;Name=ANOS2P
HG003_chrY	CAT	exon	14612617	14612966	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=exon:HG003_chrY_T0001270:0;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14612967	14651875	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=intron:HG003_chrY_T0001270:0;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14651876	14651923	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=exon:HG003_chrY_T0001270:1;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14651924	14719484	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=intron:HG003_chrY_T0001270:1;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14719485	14719707	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=exon:HG003_chrY_T0001270:2;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14719708	14730049	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=intron:HG003_chrY_T0001270:2;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14730050	14730233	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=exon:HG003_chrY_T0001270:3;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14730234	14732664	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=intron:HG003_chrY_T0001270:3;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14732665	14732781	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=exon:HG003_chrY_T0001270:4;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14732782	14748240	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=intron:HG003_chrY_T0001270:4;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14748241	14748446	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=exon:HG003_chrY_T0001270:5;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14748447	14763856	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=intron:HG003_chrY_T0001270:5;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14763857	14763951	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=exon:HG003_chrY_T0001270:6;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14763952	14766663	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=intron:HG003_chrY_T0001270:6;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14766664	14766834	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=exon:HG003_chrY_T0001270:7;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14766835	14767808	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=intron:HG003_chrY_T0001270:7;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14767809	14768029	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=exon:HG003_chrY_T0001270:8;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14768030	14769154	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=intron:HG003_chrY_T0001270:8;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14769155	14769296	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=exon:HG003_chrY_T0001270:9;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14769297	14776749	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=intron:HG003_chrY_T0001270:9;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14776750	14776808	.	+	.	source_transcript=ENST00000472227.5;source_transcript_name=ANOS2P-201;source_gene=ENSG00000241859.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000241859.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000472227.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000472227.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANOS2P;transcript_id=HG003_chrY_T0001270;gene_id=HG003_chrY_G0000418;Parent=HG003_chrY_T0001270;transcript_name=HG003_chrY_T0001270;gene_name=ANOS2P;ID=exon:HG003_chrY_T0001270:10;Name=ANOS2P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14846722	14847423	.	-	.	source_gene_common_name=VCY;source_gene=ENSG00000129864.7;alternative_source_transcripts=ENST00000250825.5,ENST00000250825.5;gene_id=HG003_chrY_G0000419;gene_biotype=protein_coding;gene_name=VCY;gene_sources=liftoff;ID=HG003_chrY_G0000419;Name=VCY
HG003_chrY	CAT	transcript	14846722	14847423	100	-	.	source_transcript=ENST00000250825.5;source_transcript_name=VCY-201;source_gene=ENSG00000129864.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129864.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250825.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250825.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=ENST00000250825.5,ENST00000250825.5;transcript_id=HG003_chrY_T0001273;gene_id=HG003_chrY_G0000419;Parent=HG003_chrY_G0000419;transcript_name=HG003_chrY_T0001273;gene_name=VCY;ID=HG003_chrY_T0001273;Name=VCY
HG003_chrY	CAT	exon	14846722	14847096	.	-	.	source_transcript=ENST00000250825.5;source_transcript_name=VCY-201;source_gene=ENSG00000129864.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129864.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250825.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250825.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=ENST00000250825.5,ENST00000250825.5;transcript_id=HG003_chrY_T0001273;gene_id=HG003_chrY_G0000419;Parent=HG003_chrY_T0001273;transcript_name=HG003_chrY_T0001273;gene_name=VCY;ID=exon:HG003_chrY_T0001273:0;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14846821	14847096	.	-	0	source_transcript=ENST00000250825.5;source_transcript_name=VCY-201;source_gene=ENSG00000129864.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129864.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250825.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250825.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=ENST00000250825.5,ENST00000250825.5;transcript_id=HG003_chrY_T0001273;gene_id=HG003_chrY_G0000419;Parent=HG003_chrY_T0001273;transcript_name=HG003_chrY_T0001273;gene_name=VCY;ID=CDS:HG003_chrY_T0001273:0;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14846821	14846823	.	-	0	source_transcript=ENST00000250825.5;source_transcript_name=VCY-201;source_gene=ENSG00000129864.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129864.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250825.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250825.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=ENST00000250825.5,ENST00000250825.5;transcript_id=HG003_chrY_T0001273;gene_id=HG003_chrY_G0000419;Parent=HG003_chrY_T0001273;transcript_name=HG003_chrY_T0001273;gene_name=VCY;ID=stop_codon:HG003_chrY_T0001273;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14847097	14847288	.	-	.	source_transcript=ENST00000250825.5;source_transcript_name=VCY-201;source_gene=ENSG00000129864.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129864.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250825.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250825.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=ENST00000250825.5,ENST00000250825.5;transcript_id=HG003_chrY_T0001273;gene_id=HG003_chrY_G0000419;Parent=HG003_chrY_T0001273;transcript_name=HG003_chrY_T0001273;gene_name=VCY;ID=intron:HG003_chrY_T0001273:0;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14847289	14847423	.	-	.	source_transcript=ENST00000250825.5;source_transcript_name=VCY-201;source_gene=ENSG00000129864.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129864.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250825.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250825.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=ENST00000250825.5,ENST00000250825.5;transcript_id=HG003_chrY_T0001273;gene_id=HG003_chrY_G0000419;Parent=HG003_chrY_T0001273;transcript_name=HG003_chrY_T0001273;gene_name=VCY;ID=exon:HG003_chrY_T0001273:1;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14847289	14847390	.	-	0	source_transcript=ENST00000250825.5;source_transcript_name=VCY-201;source_gene=ENSG00000129864.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129864.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250825.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250825.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=ENST00000250825.5,ENST00000250825.5;transcript_id=HG003_chrY_T0001273;gene_id=HG003_chrY_G0000419;Parent=HG003_chrY_T0001273;transcript_name=HG003_chrY_T0001273;gene_name=VCY;ID=CDS:HG003_chrY_T0001273:1;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14847388	14847390	.	-	0	source_transcript=ENST00000250825.5;source_transcript_name=VCY-201;source_gene=ENSG00000129864.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129864.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250825.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250825.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY;alternative_source_transcripts=ENST00000250825.5,ENST00000250825.5;transcript_id=HG003_chrY_T0001273;gene_id=HG003_chrY_G0000419;Parent=HG003_chrY_T0001273;transcript_name=HG003_chrY_T0001273;gene_name=VCY;ID=start_codon:HG003_chrY_T0001273;Name=VCY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14917217	14917948	.	+	.	source_gene_common_name=VCY1B;source_gene=ENSG00000129862.7;alternative_source_transcripts=ENST00000250823.5,ENST00000250823.5;gene_id=HG003_chrY_G0000420;gene_biotype=protein_coding;gene_name=VCY1B;gene_sources=liftoff;ID=HG003_chrY_G0000420;Name=VCY1B
HG003_chrY	CAT	transcript	14917217	14917948	100	+	.	source_transcript=ENST00000250823.5;source_transcript_name=VCY1B-201;source_gene=ENSG00000129862.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129862.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250823.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250823.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=ENST00000250823.5,ENST00000250823.5;transcript_id=HG003_chrY_T0001274;gene_id=HG003_chrY_G0000420;Parent=HG003_chrY_G0000420;transcript_name=HG003_chrY_T0001274;gene_name=VCY1B;ID=HG003_chrY_T0001274;Name=VCY1B
HG003_chrY	CAT	exon	14917217	14917381	.	+	.	source_transcript=ENST00000250823.5;source_transcript_name=VCY1B-201;source_gene=ENSG00000129862.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129862.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250823.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250823.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=ENST00000250823.5,ENST00000250823.5;transcript_id=HG003_chrY_T0001274;gene_id=HG003_chrY_G0000420;Parent=HG003_chrY_T0001274;transcript_name=HG003_chrY_T0001274;gene_name=VCY1B;ID=exon:HG003_chrY_T0001274:0;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14917280	14917381	.	+	0	source_transcript=ENST00000250823.5;source_transcript_name=VCY1B-201;source_gene=ENSG00000129862.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129862.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250823.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250823.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=ENST00000250823.5,ENST00000250823.5;transcript_id=HG003_chrY_T0001274;gene_id=HG003_chrY_G0000420;Parent=HG003_chrY_T0001274;transcript_name=HG003_chrY_T0001274;gene_name=VCY1B;ID=CDS:HG003_chrY_T0001274:0;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	14917280	14917282	.	+	0	source_transcript=ENST00000250823.5;source_transcript_name=VCY1B-201;source_gene=ENSG00000129862.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129862.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250823.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250823.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=ENST00000250823.5,ENST00000250823.5;transcript_id=HG003_chrY_T0001274;gene_id=HG003_chrY_G0000420;Parent=HG003_chrY_T0001274;transcript_name=HG003_chrY_T0001274;gene_name=VCY1B;ID=start_codon:HG003_chrY_T0001274;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14917382	14917573	.	+	.	source_transcript=ENST00000250823.5;source_transcript_name=VCY1B-201;source_gene=ENSG00000129862.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129862.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250823.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250823.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=ENST00000250823.5,ENST00000250823.5;transcript_id=HG003_chrY_T0001274;gene_id=HG003_chrY_G0000420;Parent=HG003_chrY_T0001274;transcript_name=HG003_chrY_T0001274;gene_name=VCY1B;ID=intron:HG003_chrY_T0001274:0;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14917574	14917948	.	+	.	source_transcript=ENST00000250823.5;source_transcript_name=VCY1B-201;source_gene=ENSG00000129862.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129862.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250823.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250823.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=ENST00000250823.5,ENST00000250823.5;transcript_id=HG003_chrY_T0001274;gene_id=HG003_chrY_G0000420;Parent=HG003_chrY_T0001274;transcript_name=HG003_chrY_T0001274;gene_name=VCY1B;ID=exon:HG003_chrY_T0001274:1;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	14917574	14917849	.	+	0	source_transcript=ENST00000250823.5;source_transcript_name=VCY1B-201;source_gene=ENSG00000129862.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129862.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250823.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250823.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=ENST00000250823.5,ENST00000250823.5;transcript_id=HG003_chrY_T0001274;gene_id=HG003_chrY_G0000420;Parent=HG003_chrY_T0001274;transcript_name=HG003_chrY_T0001274;gene_name=VCY1B;ID=CDS:HG003_chrY_T0001274:1;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	14917847	14917849	.	+	0	source_transcript=ENST00000250823.5;source_transcript_name=VCY1B-201;source_gene=ENSG00000129862.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129862.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250823.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000250823.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VCY1B;alternative_source_transcripts=ENST00000250823.5,ENST00000250823.5;transcript_id=HG003_chrY_T0001274;gene_id=HG003_chrY_G0000420;Parent=HG003_chrY_T0001274;transcript_name=HG003_chrY_T0001274;gene_name=VCY1B;ID=stop_codon:HG003_chrY_T0001274;Name=VCY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14942065	14947590	.	+	.	source_gene_common_name=PNPLA4P1;source_gene=ENSG00000235451.1;alternative_source_transcripts=ENST00000458328.1,ENST00000458328.1;gene_id=HG003_chrY_G0000421;gene_biotype=unprocessed_pseudogene;gene_name=PNPLA4P1;gene_sources=liftoff;ID=HG003_chrY_G0000421;Name=PNPLA4P1
HG003_chrY	CAT	transcript	14942065	14947590	1000	+	.	source_transcript=ENST00000458328.1;source_transcript_name=PNPLA4P1-201;source_gene=ENSG00000235451.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235451.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000458328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458328.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PNPLA4P1;alternative_source_transcripts=ENST00000458328.1,ENST00000458328.1;transcript_id=HG003_chrY_T0001275;gene_id=HG003_chrY_G0000421;Parent=HG003_chrY_G0000421;transcript_name=HG003_chrY_T0001275;gene_name=PNPLA4P1;ID=HG003_chrY_T0001275;Name=PNPLA4P1
HG003_chrY	CAT	exon	14942065	14942159	.	+	.	source_transcript=ENST00000458328.1;source_transcript_name=PNPLA4P1-201;source_gene=ENSG00000235451.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235451.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000458328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458328.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PNPLA4P1;alternative_source_transcripts=ENST00000458328.1,ENST00000458328.1;transcript_id=HG003_chrY_T0001275;gene_id=HG003_chrY_G0000421;Parent=HG003_chrY_T0001275;transcript_name=HG003_chrY_T0001275;gene_name=PNPLA4P1;ID=exon:HG003_chrY_T0001275:0;Name=PNPLA4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14942160	14942295	.	+	.	source_transcript=ENST00000458328.1;source_transcript_name=PNPLA4P1-201;source_gene=ENSG00000235451.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235451.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000458328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458328.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PNPLA4P1;alternative_source_transcripts=ENST00000458328.1,ENST00000458328.1;transcript_id=HG003_chrY_T0001275;gene_id=HG003_chrY_G0000421;Parent=HG003_chrY_T0001275;transcript_name=HG003_chrY_T0001275;gene_name=PNPLA4P1;ID=intron:HG003_chrY_T0001275:0;Name=PNPLA4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14942296	14942439	.	+	.	source_transcript=ENST00000458328.1;source_transcript_name=PNPLA4P1-201;source_gene=ENSG00000235451.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235451.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000458328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458328.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PNPLA4P1;alternative_source_transcripts=ENST00000458328.1,ENST00000458328.1;transcript_id=HG003_chrY_T0001275;gene_id=HG003_chrY_G0000421;Parent=HG003_chrY_T0001275;transcript_name=HG003_chrY_T0001275;gene_name=PNPLA4P1;ID=exon:HG003_chrY_T0001275:1;Name=PNPLA4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	14942440	14947524	.	+	.	source_transcript=ENST00000458328.1;source_transcript_name=PNPLA4P1-201;source_gene=ENSG00000235451.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235451.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000458328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458328.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PNPLA4P1;alternative_source_transcripts=ENST00000458328.1,ENST00000458328.1;transcript_id=HG003_chrY_T0001275;gene_id=HG003_chrY_G0000421;Parent=HG003_chrY_T0001275;transcript_name=HG003_chrY_T0001275;gene_name=PNPLA4P1;ID=intron:HG003_chrY_T0001275:1;Name=PNPLA4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	14947525	14947590	.	+	.	source_transcript=ENST00000458328.1;source_transcript_name=PNPLA4P1-201;source_gene=ENSG00000235451.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235451.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000458328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458328.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PNPLA4P1;alternative_source_transcripts=ENST00000458328.1,ENST00000458328.1;transcript_id=HG003_chrY_T0001275;gene_id=HG003_chrY_G0000421;Parent=HG003_chrY_T0001275;transcript_name=HG003_chrY_T0001275;gene_name=PNPLA4P1;ID=exon:HG003_chrY_T0001275:2;Name=PNPLA4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	14962578	14962713	.	-	.	source_gene_common_name=ENSG00000289706;source_gene=ENSG00000289706.1;alternative_source_transcripts=ENST00000696463.1,ENST00000696463.1;gene_id=HG003_chrY_G0000422;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000289706;gene_sources=liftoff;ID=HG003_chrY_G0000422;Name=ENSG00000289706
HG003_chrY	CAT	transcript	14962578	14962713	1000	-	.	source_transcript=ENST00000696463.1;source_transcript_name=ENST00000696463;source_gene=ENSG00000289706.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000289706.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000696463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696463.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289706;alternative_source_transcripts=ENST00000696463.1,ENST00000696463.1;transcript_id=HG003_chrY_T0001276;gene_id=HG003_chrY_G0000422;Parent=HG003_chrY_G0000422;transcript_name=HG003_chrY_T0001276;gene_name=ENSG00000289706;ID=HG003_chrY_T0001276;Name=ENSG00000289706
HG003_chrY	CAT	exon	14962578	14962713	.	-	.	source_transcript=ENST00000696463.1;source_transcript_name=ENST00000696463;source_gene=ENSG00000289706.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000289706.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000696463.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696463.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289706;alternative_source_transcripts=ENST00000696463.1,ENST00000696463.1;transcript_id=HG003_chrY_T0001276;gene_id=HG003_chrY_G0000422;Parent=HG003_chrY_T0001276;transcript_name=HG003_chrY_T0001276;gene_name=ENSG00000289706;ID=exon:HG003_chrY_T0001276:0;Name=ENSG00000289706;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	15137168	15138445	.	-	.	source_gene_common_name=ENSG00000223517;source_gene=ENSG00000223517.1;alternative_source_transcripts=ENST00000435111.1,ENST00000435111.1;gene_id=HG003_chrY_G0000423;gene_biotype=lncRNA;gene_name=ENSG00000223517;gene_sources=liftoff;ID=HG003_chrY_G0000423;Name=ENSG00000223517
HG003_chrY	CAT	transcript	15137168	15138445	1000	-	.	source_transcript=ENST00000435111.1;source_transcript_name=ENST00000435111;source_gene=ENSG00000223517.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223517.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000435111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435111.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223517;alternative_source_transcripts=ENST00000435111.1,ENST00000435111.1;transcript_id=HG003_chrY_T0001277;gene_id=HG003_chrY_G0000423;Parent=HG003_chrY_G0000423;transcript_name=HG003_chrY_T0001277;gene_name=ENSG00000223517;ID=HG003_chrY_T0001277;Name=ENSG00000223517
HG003_chrY	CAT	exon	15137168	15137567	.	-	.	source_transcript=ENST00000435111.1;source_transcript_name=ENST00000435111;source_gene=ENSG00000223517.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223517.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000435111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223517;alternative_source_transcripts=ENST00000435111.1,ENST00000435111.1;transcript_id=HG003_chrY_T0001277;gene_id=HG003_chrY_G0000423;Parent=HG003_chrY_T0001277;transcript_name=HG003_chrY_T0001277;gene_name=ENSG00000223517;ID=exon:HG003_chrY_T0001277:0;Name=ENSG00000223517;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15137568	15138305	.	-	.	source_transcript=ENST00000435111.1;source_transcript_name=ENST00000435111;source_gene=ENSG00000223517.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223517.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000435111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223517;alternative_source_transcripts=ENST00000435111.1,ENST00000435111.1;transcript_id=HG003_chrY_T0001277;gene_id=HG003_chrY_G0000423;Parent=HG003_chrY_T0001277;transcript_name=HG003_chrY_T0001277;gene_name=ENSG00000223517;ID=intron:HG003_chrY_T0001277:0;Name=ENSG00000223517;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15138306	15138445	.	-	.	source_transcript=ENST00000435111.1;source_transcript_name=ENST00000435111;source_gene=ENSG00000223517.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223517.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000435111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000223517;alternative_source_transcripts=ENST00000435111.1,ENST00000435111.1;transcript_id=HG003_chrY_T0001277;gene_id=HG003_chrY_G0000423;Parent=HG003_chrY_T0001277;transcript_name=HG003_chrY_T0001277;gene_name=ENSG00000223517;ID=exon:HG003_chrY_T0001277:1;Name=ENSG00000223517;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	15383526	15706540	.	+	.	source_gene_common_name=NLGN4Y;source_gene=ENSG00000165246.15;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;gene_id=HG003_chrY_G0000424;gene_biotype=protein_coding;gene_name=NLGN4Y;gene_sources=liftoff;ID=HG003_chrY_G0000424;Name=NLGN4Y
HG003_chrY	CAT	transcript	15383526	15706525	100	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_G0000424;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=HG003_chrY_T0001278;Name=NLGN4Y
HG003_chrY	CAT	exon	15383526	15383894	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001278:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15383895	15482976	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001278:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001278:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001278:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0001278;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001278:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001278:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001278:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001278:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001278:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001278:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001278:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001278:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001278:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001278:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001278:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001278:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001278:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706525	.	+	.	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001278:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001278:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=ENST00000643089.1;source_transcript_name=NLGN4Y-209;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000643089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000643089.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000643089.1,ENST00000643089.1;transcript_id=HG003_chrY_T0001278;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001278;transcript_name=HG003_chrY_T0001278;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0001278;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15383591	15483465	1000	+	.	source_transcript=ENST00000471252.1;source_transcript_name=NLGN4Y-206;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000471252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000471252.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000471252.1,ENST00000471252.1;transcript_id=HG003_chrY_T0001279;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_G0000424;transcript_name=HG003_chrY_T0001279;gene_name=NLGN4Y;ID=HG003_chrY_T0001279;Name=NLGN4Y
HG003_chrY	CAT	exon	15383591	15383894	.	+	.	source_transcript=ENST00000471252.1;source_transcript_name=NLGN4Y-206;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000471252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000471252.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000471252.1,ENST00000471252.1;transcript_id=HG003_chrY_T0001279;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001279;transcript_name=HG003_chrY_T0001279;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001279:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15383895	15482976	.	+	.	source_transcript=ENST00000471252.1;source_transcript_name=NLGN4Y-206;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000471252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000471252.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000471252.1,ENST00000471252.1;transcript_id=HG003_chrY_T0001279;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001279;transcript_name=HG003_chrY_T0001279;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001279:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483465	.	+	.	source_transcript=ENST00000471252.1;source_transcript_name=NLGN4Y-206;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000471252.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000471252.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000471252.1,ENST00000471252.1;transcript_id=HG003_chrY_T0001279;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001279;transcript_name=HG003_chrY_T0001279;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001279:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15383705	15706536	100	+	.	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_G0000424;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=HG003_chrY_T0001280;Name=NLGN4Y
HG003_chrY	CAT	exon	15383705	15383894	.	+	.	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001280:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15383895	15580437	.	+	.	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001280:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001280:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001280:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001280:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584107	15584227	.	+	0	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001280:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15584107	15584109	.	+	0	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0001280;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001280:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001280:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001280:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001280:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001280:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001280:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001280:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706536	.	+	.	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001280:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001280:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=ENST00000382872.5;source_transcript_name=NLGN4Y-204;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382872.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382872.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382872.5,ENST00000382872.5;transcript_id=HG003_chrY_T0001280;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001280;transcript_name=HG003_chrY_T0001280;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0001280;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15384699	15704612	100	+	.	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_G0000424;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=HG003_chrY_T0001281;Name=NLGN4Y
HG003_chrY	CAT	exon	15384699	15384851	.	+	.	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001281:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15384852	15482988	.	+	.	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001281:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482989	15483559	.	+	.	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001281:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001281:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0001281;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15584074	.	+	.	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001281:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001281:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001281:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001281:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001281:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001281:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001281:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001281:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001281:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001281:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15704612	.	+	.	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001281:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001281:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=ENST00000355905.6;source_transcript_name=NLGN4Y-202;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000355905.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000355905.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000355905.6,ENST00000355905.6;transcript_id=HG003_chrY_T0001281;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001281;transcript_name=HG003_chrY_T0001281;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0001281;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15384699	15704612	100	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_G0000424;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=HG003_chrY_T0001282;Name=NLGN4Y
HG003_chrY	CAT	exon	15384699	15384851	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001282:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15384852	15482988	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001282:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482989	15483559	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001282:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001282:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0001282;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001282:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001282:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001282:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001282:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001282:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001282:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15609578	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001282:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15609579	15609689	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001282:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15609579	15609689	.	+	2	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001282:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15609690	15685099	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001282:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001282:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001282:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001282:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001282:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001282:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001282:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15704612	.	+	.	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001282:7;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001282:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=ENST00000382868.5;source_transcript_name=NLGN4Y-203;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382868.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382868.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000382868.5,ENST00000382868.5;transcript_id=HG003_chrY_T0001282;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001282;transcript_name=HG003_chrY_T0001282;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0001282;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15384699	15704612	1000	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_G0000424;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=HG003_chrY_T0001283;Name=NLGN4Y
HG003_chrY	CAT	exon	15384699	15384851	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001283:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15384852	15482988	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001283:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482989	15483559	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001283:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001283:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001283:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001283:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001283:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15609578	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001283:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15609579	15609689	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001283:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15609690	15612636	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001283:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15612637	15612758	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001283:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15612759	15685099	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001283:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001283:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001283:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001283:7;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001283:7;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15704612	.	+	.	source_transcript=ENST00000476359.1;source_transcript_name=NLGN4Y-207;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000476359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000476359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000476359.1,ENST00000476359.1;transcript_id=HG003_chrY_T0001283;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001283;transcript_name=HG003_chrY_T0001283;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001283:8;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15384920	15483188	100	+	.	source_transcript=ENST00000645399.1;source_transcript_name=NLGN4Y-210;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000645399.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000645399.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000645399.1,ENST00000645399.1;transcript_id=HG003_chrY_T0001284;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_G0000424;transcript_name=HG003_chrY_T0001284;gene_name=NLGN4Y;ID=HG003_chrY_T0001284;Name=NLGN4Y
HG003_chrY	CAT	exon	15384920	15385237	.	+	.	source_transcript=ENST00000645399.1;source_transcript_name=NLGN4Y-210;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000645399.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000645399.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000645399.1,ENST00000645399.1;transcript_id=HG003_chrY_T0001284;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001284;transcript_name=HG003_chrY_T0001284;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001284:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385238	15482976	.	+	.	source_transcript=ENST00000645399.1;source_transcript_name=NLGN4Y-210;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000645399.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000645399.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000645399.1,ENST00000645399.1;transcript_id=HG003_chrY_T0001284;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001284;transcript_name=HG003_chrY_T0001284;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001284:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483188	.	+	.	source_transcript=ENST00000645399.1;source_transcript_name=NLGN4Y-210;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000645399.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000645399.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000645399.1,ENST00000645399.1;transcript_id=HG003_chrY_T0001284;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001284;transcript_name=HG003_chrY_T0001284;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001284:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483188	.	+	0	source_transcript=ENST00000645399.1;source_transcript_name=NLGN4Y-210;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000645399.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000645399.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000645399.1,ENST00000645399.1;transcript_id=HG003_chrY_T0001284;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001284;transcript_name=HG003_chrY_T0001284;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001284:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=ENST00000645399.1;source_transcript_name=NLGN4Y-210;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000645399.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000645399.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000645399.1,ENST00000645399.1;transcript_id=HG003_chrY_T0001284;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001284;transcript_name=HG003_chrY_T0001284;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0001284;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15706540	100	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_G0000424;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=HG003_chrY_T0001285;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385661	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001285:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385662	15482976	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001285:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001285:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001285:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0001285;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001285:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001285:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001285:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001285:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001285:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001285:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001285:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001285:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001285:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001285:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001285:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001285:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001285:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15706540	.	+	.	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001285:6;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001285:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=ENST00000684976.1;source_transcript_name=NLGN4Y-211;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000684976.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000684976.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000684976.1,ENST00000684976.1;transcript_id=HG003_chrY_T0001285;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001285;transcript_name=HG003_chrY_T0001285;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0001285;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385482	15483336	1000	+	.	source_transcript=ENST00000481089.1;source_transcript_name=NLGN4Y-208;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481089.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000481089.1,ENST00000481089.1;transcript_id=HG003_chrY_T0001286;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_G0000424;transcript_name=HG003_chrY_T0001286;gene_name=NLGN4Y;ID=HG003_chrY_T0001286;Name=NLGN4Y
HG003_chrY	CAT	exon	15385482	15385661	.	+	.	source_transcript=ENST00000481089.1;source_transcript_name=NLGN4Y-208;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481089.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000481089.1,ENST00000481089.1;transcript_id=HG003_chrY_T0001286;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001286;transcript_name=HG003_chrY_T0001286;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001286:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385662	15482976	.	+	.	source_transcript=ENST00000481089.1;source_transcript_name=NLGN4Y-208;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481089.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000481089.1,ENST00000481089.1;transcript_id=HG003_chrY_T0001286;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001286;transcript_name=HG003_chrY_T0001286;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001286:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483336	.	+	.	source_transcript=ENST00000481089.1;source_transcript_name=NLGN4Y-208;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481089.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481089.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000481089.1,ENST00000481089.1;transcript_id=HG003_chrY_T0001286;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001286;transcript_name=HG003_chrY_T0001286;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001286:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15385527	15704533	100	+	.	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_G0000424;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=HG003_chrY_T0001287;Name=NLGN4Y
HG003_chrY	CAT	exon	15385527	15385889	.	+	.	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001287:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15385890	15482976	.	+	.	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001287:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15482977	15483559	.	+	.	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001287:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483088	15483559	.	+	0	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001287:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	15483088	15483090	.	+	0	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=start_codon:HG003_chrY_T0001287;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15584074	.	+	.	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001287:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001287:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001287:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15685099	.	+	.	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001287:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15685100	15685285	.	+	.	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001287:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15685100	15685285	.	+	2	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001287:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15685286	15690615	.	+	.	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001287:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15690616	15691405	.	+	.	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001287:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15690616	15691405	.	+	2	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001287:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15691406	15701298	.	+	.	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001287:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15701299	15704533	.	+	.	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001287:5;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15701299	15702148	.	+	1	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001287:4;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15702146	15702148	.	+	0	source_transcript=ENST00000339174.9;source_transcript_name=NLGN4Y-201;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000339174.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000339174.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000339174.9,ENST00000339174.9;transcript_id=HG003_chrY_T0001287;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001287;transcript_name=HG003_chrY_T0001287;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0001287;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	15483149	15594509	100	+	.	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_G0000424;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=HG003_chrY_T0001288;Name=NLGN4Y
HG003_chrY	CAT	exon	15483149	15483559	.	+	.	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001288;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001288:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15483149	15483559	.	+	2	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001288;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001288:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15483560	15580437	.	+	.	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001288;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001288:0;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15580438	15580497	.	+	.	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001288;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001288:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15580438	15580497	.	+	2	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001288;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001288:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15580498	15584074	.	+	.	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001288;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001288:1;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15584075	15584227	.	+	.	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001288;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001288:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15584075	15584227	.	+	2	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001288;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001288:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15584228	15594411	.	+	.	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001288;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=intron:HG003_chrY_T0001288:2;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15594412	15594509	.	+	.	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001288;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=exon:HG003_chrY_T0001288:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	15594412	15594497	.	+	2	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001288;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=CDS:HG003_chrY_T0001288:3;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	15594495	15594497	.	+	0	source_transcript=ENST00000413217.1;source_transcript_name=NLGN4Y-205;source_gene=ENSG00000165246.15;source_gene_biotype=protein_coding;original_gene_id=ENSG00000165246.15;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000413217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413217.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y;alternative_source_transcripts=ENST00000413217.1,ENST00000413217.1;transcript_id=HG003_chrY_T0001288;gene_id=HG003_chrY_G0000424;Parent=HG003_chrY_T0001288;transcript_name=HG003_chrY_T0001288;gene_name=NLGN4Y;ID=stop_codon:HG003_chrY_T0001288;Name=NLGN4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	15500063	15501325	.	+	.	source_gene_common_name=AGKP1;source_gene=ENSG00000226555.1;alternative_source_transcripts=ENST00000455254.1,ENST00000455254.1;gene_id=HG003_chrY_G0000425;gene_biotype=processed_pseudogene;gene_name=AGKP1;gene_sources=liftoff;ID=HG003_chrY_G0000425;Name=AGKP1
HG003_chrY	CAT	transcript	15500063	15501325	1000	+	.	source_transcript=ENST00000455254.1;source_transcript_name=AGKP1-201;source_gene=ENSG00000226555.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000226555.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000455254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455254.1;transcript_score=199.921;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AGKP1;alternative_source_transcripts=ENST00000455254.1,ENST00000455254.1;transcript_id=HG003_chrY_T0001289;gene_id=HG003_chrY_G0000425;Parent=HG003_chrY_G0000425;transcript_name=HG003_chrY_T0001289;gene_name=AGKP1;ID=HG003_chrY_T0001289;Name=AGKP1
HG003_chrY	CAT	exon	15500063	15501325	.	+	.	source_transcript=ENST00000455254.1;source_transcript_name=AGKP1-201;source_gene=ENSG00000226555.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000226555.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000455254.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455254.1;transcript_score=199.921;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AGKP1;alternative_source_transcripts=ENST00000455254.1,ENST00000455254.1;transcript_id=HG003_chrY_T0001289;gene_id=HG003_chrY_G0000425;Parent=HG003_chrY_T0001289;transcript_name=HG003_chrY_T0001289;gene_name=AGKP1;ID=exon:HG003_chrY_T0001289:0;Name=AGKP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	15654595	15664945	.	-	.	source_gene_common_name=NLGN4Y-AS1;source_gene=ENSG00000228787.1;alternative_source_transcripts=ENST00000434164.1,ENST00000434164.1;gene_id=HG003_chrY_G0000426;gene_biotype=lncRNA;gene_name=NLGN4Y-AS1;gene_sources=liftoff;ID=HG003_chrY_G0000426;Name=NLGN4Y-AS1
HG003_chrY	CAT	transcript	15654595	15664945	1000	-	.	source_transcript=ENST00000434164.1;source_transcript_name=NLGN4Y-AS1-201;source_gene=ENSG00000228787.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228787.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000434164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434164.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=ENST00000434164.1,ENST00000434164.1;transcript_id=HG003_chrY_T0001290;gene_id=HG003_chrY_G0000426;Parent=HG003_chrY_G0000426;transcript_name=HG003_chrY_T0001290;gene_name=NLGN4Y-AS1;ID=HG003_chrY_T0001290;Name=NLGN4Y-AS1
HG003_chrY	CAT	exon	15654595	15654940	.	-	.	source_transcript=ENST00000434164.1;source_transcript_name=NLGN4Y-AS1-201;source_gene=ENSG00000228787.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228787.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000434164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=ENST00000434164.1,ENST00000434164.1;transcript_id=HG003_chrY_T0001290;gene_id=HG003_chrY_G0000426;Parent=HG003_chrY_T0001290;transcript_name=HG003_chrY_T0001290;gene_name=NLGN4Y-AS1;ID=exon:HG003_chrY_T0001290:0;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15654941	15659576	.	-	.	source_transcript=ENST00000434164.1;source_transcript_name=NLGN4Y-AS1-201;source_gene=ENSG00000228787.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228787.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000434164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=ENST00000434164.1,ENST00000434164.1;transcript_id=HG003_chrY_T0001290;gene_id=HG003_chrY_G0000426;Parent=HG003_chrY_T0001290;transcript_name=HG003_chrY_T0001290;gene_name=NLGN4Y-AS1;ID=intron:HG003_chrY_T0001290:0;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15659577	15659664	.	-	.	source_transcript=ENST00000434164.1;source_transcript_name=NLGN4Y-AS1-201;source_gene=ENSG00000228787.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228787.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000434164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=ENST00000434164.1,ENST00000434164.1;transcript_id=HG003_chrY_T0001290;gene_id=HG003_chrY_G0000426;Parent=HG003_chrY_T0001290;transcript_name=HG003_chrY_T0001290;gene_name=NLGN4Y-AS1;ID=exon:HG003_chrY_T0001290:1;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15659665	15662230	.	-	.	source_transcript=ENST00000434164.1;source_transcript_name=NLGN4Y-AS1-201;source_gene=ENSG00000228787.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228787.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000434164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=ENST00000434164.1,ENST00000434164.1;transcript_id=HG003_chrY_T0001290;gene_id=HG003_chrY_G0000426;Parent=HG003_chrY_T0001290;transcript_name=HG003_chrY_T0001290;gene_name=NLGN4Y-AS1;ID=intron:HG003_chrY_T0001290:1;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15662231	15662299	.	-	.	source_transcript=ENST00000434164.1;source_transcript_name=NLGN4Y-AS1-201;source_gene=ENSG00000228787.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228787.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000434164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=ENST00000434164.1,ENST00000434164.1;transcript_id=HG003_chrY_T0001290;gene_id=HG003_chrY_G0000426;Parent=HG003_chrY_T0001290;transcript_name=HG003_chrY_T0001290;gene_name=NLGN4Y-AS1;ID=exon:HG003_chrY_T0001290:2;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15662300	15664916	.	-	.	source_transcript=ENST00000434164.1;source_transcript_name=NLGN4Y-AS1-201;source_gene=ENSG00000228787.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228787.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000434164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=ENST00000434164.1,ENST00000434164.1;transcript_id=HG003_chrY_T0001290;gene_id=HG003_chrY_G0000426;Parent=HG003_chrY_T0001290;transcript_name=HG003_chrY_T0001290;gene_name=NLGN4Y-AS1;ID=intron:HG003_chrY_T0001290:2;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15664917	15664945	.	-	.	source_transcript=ENST00000434164.1;source_transcript_name=NLGN4Y-AS1-201;source_gene=ENSG00000228787.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228787.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000434164.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NLGN4Y-AS1;alternative_source_transcripts=ENST00000434164.1,ENST00000434164.1;transcript_id=HG003_chrY_T0001290;gene_id=HG003_chrY_G0000426;Parent=HG003_chrY_T0001290;transcript_name=HG003_chrY_T0001290;gene_name=NLGN4Y-AS1;ID=exon:HG003_chrY_T0001290:3;Name=NLGN4Y-AS1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	15768782	15768952	.	+	.	source_gene_common_name=MED13P1;source_gene=ENSG00000236131.1;alternative_source_transcripts=ENST00000428342.1,ENST00000428342.1;gene_id=HG003_chrY_G0000427;gene_biotype=processed_pseudogene;gene_name=MED13P1;gene_sources=liftoff;ID=HG003_chrY_G0000427;Name=MED13P1
HG003_chrY	CAT	transcript	15768782	15768952	1000	+	.	source_transcript=ENST00000428342.1;source_transcript_name=MED13P1-201;source_gene=ENSG00000236131.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000236131.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000428342.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428342.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MED13P1;alternative_source_transcripts=ENST00000428342.1,ENST00000428342.1;transcript_id=HG003_chrY_T0001291;gene_id=HG003_chrY_G0000427;Parent=HG003_chrY_G0000427;transcript_name=HG003_chrY_T0001291;gene_name=MED13P1;ID=HG003_chrY_T0001291;Name=MED13P1
HG003_chrY	CAT	exon	15768782	15768952	.	+	.	source_transcript=ENST00000428342.1;source_transcript_name=MED13P1-201;source_gene=ENSG00000236131.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000236131.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000428342.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428342.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MED13P1;alternative_source_transcripts=ENST00000428342.1,ENST00000428342.1;transcript_id=HG003_chrY_T0001291;gene_id=HG003_chrY_G0000427;Parent=HG003_chrY_T0001291;transcript_name=HG003_chrY_T0001291;gene_name=MED13P1;ID=exon:HG003_chrY_T0001291:0;Name=MED13P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	15786581	15787733	.	-	.	source_gene_common_name=ENSG00000304558;source_gene=ENSG00000304558.1;alternative_source_transcripts=ENST00000804523.1,ENST00000804523.1;gene_id=HG003_chrY_G0000428;gene_biotype=lncRNA;gene_name=ENSG00000304558;gene_sources=liftoff;ID=HG003_chrY_G0000428;Name=ENSG00000304558
HG003_chrY	CAT	transcript	15786581	15787733	1000	-	.	source_transcript=ENST00000804523.1;source_transcript_name=ENST00000804523;source_gene=ENSG00000304558.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304558.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000804523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000804523.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304558;alternative_source_transcripts=ENST00000804523.1,ENST00000804523.1;transcript_id=HG003_chrY_T0001292;gene_id=HG003_chrY_G0000428;Parent=HG003_chrY_G0000428;transcript_name=HG003_chrY_T0001292;gene_name=ENSG00000304558;ID=HG003_chrY_T0001292;Name=ENSG00000304558
HG003_chrY	CAT	exon	15786581	15787459	.	-	.	source_transcript=ENST00000804523.1;source_transcript_name=ENST00000804523;source_gene=ENSG00000304558.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304558.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000804523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000804523.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304558;alternative_source_transcripts=ENST00000804523.1,ENST00000804523.1;transcript_id=HG003_chrY_T0001292;gene_id=HG003_chrY_G0000428;Parent=HG003_chrY_T0001292;transcript_name=HG003_chrY_T0001292;gene_name=ENSG00000304558;ID=exon:HG003_chrY_T0001292:0;Name=ENSG00000304558;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15787460	15787615	.	-	.	source_transcript=ENST00000804523.1;source_transcript_name=ENST00000804523;source_gene=ENSG00000304558.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304558.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000804523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000804523.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304558;alternative_source_transcripts=ENST00000804523.1,ENST00000804523.1;transcript_id=HG003_chrY_T0001292;gene_id=HG003_chrY_G0000428;Parent=HG003_chrY_T0001292;transcript_name=HG003_chrY_T0001292;gene_name=ENSG00000304558;ID=intron:HG003_chrY_T0001292:0;Name=ENSG00000304558;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15787616	15787733	.	-	.	source_transcript=ENST00000804523.1;source_transcript_name=ENST00000804523;source_gene=ENSG00000304558.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304558.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000804523.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000804523.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304558;alternative_source_transcripts=ENST00000804523.1,ENST00000804523.1;transcript_id=HG003_chrY_T0001292;gene_id=HG003_chrY_G0000428;Parent=HG003_chrY_T0001292;transcript_name=HG003_chrY_T0001292;gene_name=ENSG00000304558;ID=exon:HG003_chrY_T0001292:1;Name=ENSG00000304558;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	15802431	15802634	.	-	.	source_gene_common_name=CYCSP46;source_gene=ENSG00000227949.1;alternative_source_transcripts=ENST00000423569.1,ENST00000423569.1;gene_id=HG003_chrY_G0000429;gene_biotype=processed_pseudogene;gene_name=CYCSP46;gene_sources=liftoff;ID=HG003_chrY_G0000429;Name=CYCSP46
HG003_chrY	CAT	transcript	15802431	15802634	1000	-	.	source_transcript=ENST00000423569.1;source_transcript_name=CYCSP46-201;source_gene=ENSG00000227949.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227949.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000423569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423569.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CYCSP46;alternative_source_transcripts=ENST00000423569.1,ENST00000423569.1;transcript_id=HG003_chrY_T0001293;gene_id=HG003_chrY_G0000429;Parent=HG003_chrY_G0000429;transcript_name=HG003_chrY_T0001293;gene_name=CYCSP46;ID=HG003_chrY_T0001293;Name=CYCSP46
HG003_chrY	CAT	exon	15802431	15802634	.	-	.	source_transcript=ENST00000423569.1;source_transcript_name=CYCSP46-201;source_gene=ENSG00000227949.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227949.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000423569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423569.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CYCSP46;alternative_source_transcripts=ENST00000423569.1,ENST00000423569.1;transcript_id=HG003_chrY_T0001293;gene_id=HG003_chrY_G0000429;Parent=HG003_chrY_T0001293;transcript_name=HG003_chrY_T0001293;gene_name=CYCSP46;ID=exon:HG003_chrY_T0001293:0;Name=CYCSP46;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	15802630	15803599	.	+	.	source_gene_common_name=ENSG00000224518;source_gene=ENSG00000224518.2;alternative_source_transcripts=ENST00000427212.2,ENST00000427212.2;gene_id=HG003_chrY_G0000430;gene_biotype=processed_pseudogene;gene_name=ENSG00000224518;gene_sources=liftoff;ID=HG003_chrY_G0000430;Name=ENSG00000224518
HG003_chrY	CAT	transcript	15802630	15803599	1000	+	.	source_transcript=ENST00000427212.2;source_transcript_name=ENST00000427212;source_gene=ENSG00000224518.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224518.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000427212.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000427212.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224518;alternative_source_transcripts=ENST00000427212.2,ENST00000427212.2;transcript_id=HG003_chrY_T0001294;gene_id=HG003_chrY_G0000430;Parent=HG003_chrY_G0000430;transcript_name=HG003_chrY_T0001294;gene_name=ENSG00000224518;ID=HG003_chrY_T0001294;Name=ENSG00000224518
HG003_chrY	CAT	exon	15802630	15802705	.	+	.	source_transcript=ENST00000427212.2;source_transcript_name=ENST00000427212;source_gene=ENSG00000224518.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224518.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000427212.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000427212.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224518;alternative_source_transcripts=ENST00000427212.2,ENST00000427212.2;transcript_id=HG003_chrY_T0001294;gene_id=HG003_chrY_G0000430;Parent=HG003_chrY_T0001294;transcript_name=HG003_chrY_T0001294;gene_name=ENSG00000224518;ID=exon:HG003_chrY_T0001294:0;Name=ENSG00000224518;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	15802706	15803544	.	+	.	source_transcript=ENST00000427212.2;source_transcript_name=ENST00000427212;source_gene=ENSG00000224518.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224518.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000427212.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000427212.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224518;alternative_source_transcripts=ENST00000427212.2,ENST00000427212.2;transcript_id=HG003_chrY_T0001294;gene_id=HG003_chrY_G0000430;Parent=HG003_chrY_T0001294;transcript_name=HG003_chrY_T0001294;gene_name=ENSG00000224518;ID=intron:HG003_chrY_T0001294:0;Name=ENSG00000224518;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	15803545	15803599	.	+	.	source_transcript=ENST00000427212.2;source_transcript_name=ENST00000427212;source_gene=ENSG00000224518.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224518.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000427212.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000427212.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224518;alternative_source_transcripts=ENST00000427212.2,ENST00000427212.2;transcript_id=HG003_chrY_T0001294;gene_id=HG003_chrY_G0000430;Parent=HG003_chrY_T0001294;transcript_name=HG003_chrY_T0001294;gene_name=ENSG00000224518;ID=exon:HG003_chrY_T0001294:1;Name=ENSG00000224518;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	16209495	16316902	.	-	.	source_gene_common_name=PUDPP1;source_gene=ENSG00000234620.1;alternative_source_transcripts=ENST00000421058.1,ENST00000421058.1;gene_id=HG003_chrY_G0000431;gene_biotype=unprocessed_pseudogene;gene_name=PUDPP1;gene_sources=liftoff;ID=HG003_chrY_G0000431;Name=PUDPP1
HG003_chrY	CAT	transcript	16209495	16316902	1000	-	.	source_transcript=ENST00000421058.1;source_transcript_name=PUDPP1-201;source_gene=ENSG00000234620.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234620.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421058.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421058.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PUDPP1;alternative_source_transcripts=ENST00000421058.1,ENST00000421058.1;transcript_id=HG003_chrY_T0001295;gene_id=HG003_chrY_G0000431;Parent=HG003_chrY_G0000431;transcript_name=HG003_chrY_T0001295;gene_name=PUDPP1;ID=HG003_chrY_T0001295;Name=PUDPP1
HG003_chrY	CAT	exon	16209495	16209699	.	-	.	source_transcript=ENST00000421058.1;source_transcript_name=PUDPP1-201;source_gene=ENSG00000234620.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234620.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421058.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421058.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PUDPP1;alternative_source_transcripts=ENST00000421058.1,ENST00000421058.1;transcript_id=HG003_chrY_T0001295;gene_id=HG003_chrY_G0000431;Parent=HG003_chrY_T0001295;transcript_name=HG003_chrY_T0001295;gene_name=PUDPP1;ID=exon:HG003_chrY_T0001295:0;Name=PUDPP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16209700	16242423	.	-	.	source_transcript=ENST00000421058.1;source_transcript_name=PUDPP1-201;source_gene=ENSG00000234620.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234620.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421058.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421058.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PUDPP1;alternative_source_transcripts=ENST00000421058.1,ENST00000421058.1;transcript_id=HG003_chrY_T0001295;gene_id=HG003_chrY_G0000431;Parent=HG003_chrY_T0001295;transcript_name=HG003_chrY_T0001295;gene_name=PUDPP1;ID=intron:HG003_chrY_T0001295:0;Name=PUDPP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16242424	16242673	.	-	.	source_transcript=ENST00000421058.1;source_transcript_name=PUDPP1-201;source_gene=ENSG00000234620.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234620.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421058.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421058.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PUDPP1;alternative_source_transcripts=ENST00000421058.1,ENST00000421058.1;transcript_id=HG003_chrY_T0001295;gene_id=HG003_chrY_G0000431;Parent=HG003_chrY_T0001295;transcript_name=HG003_chrY_T0001295;gene_name=PUDPP1;ID=exon:HG003_chrY_T0001295:1;Name=PUDPP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16242674	16316862	.	-	.	source_transcript=ENST00000421058.1;source_transcript_name=PUDPP1-201;source_gene=ENSG00000234620.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234620.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421058.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421058.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PUDPP1;alternative_source_transcripts=ENST00000421058.1,ENST00000421058.1;transcript_id=HG003_chrY_T0001295;gene_id=HG003_chrY_G0000431;Parent=HG003_chrY_T0001295;transcript_name=HG003_chrY_T0001295;gene_name=PUDPP1;ID=intron:HG003_chrY_T0001295:1;Name=PUDPP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16316863	16316902	.	-	.	source_transcript=ENST00000421058.1;source_transcript_name=PUDPP1-201;source_gene=ENSG00000234620.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234620.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421058.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421058.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PUDPP1;alternative_source_transcripts=ENST00000421058.1,ENST00000421058.1;transcript_id=HG003_chrY_T0001295;gene_id=HG003_chrY_G0000431;Parent=HG003_chrY_T0001295;transcript_name=HG003_chrY_T0001295;gene_name=PUDPP1;ID=exon:HG003_chrY_T0001295:2;Name=PUDPP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	16316835	16429974	.	+	.	source_gene_common_name=ENSG00000295583;source_gene=ENSG00000295583.1;gene_id=HG003_chrY_G0000432;gene_biotype=lncRNA;gene_name=ENSG00000295583;gene_sources=liftoff;ID=HG003_chrY_G0000432;Name=ENSG00000295583
HG003_chrY	CAT	transcript	16316835	16427966	1000	+	.	source_transcript=ENST00000731061.1;source_transcript_name=ENST00000731061;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731061.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731061.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001296;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_G0000432;transcript_name=HG003_chrY_T0001296;gene_name=ENSG00000295583;ID=HG003_chrY_T0001296;Name=ENSG00000295583
HG003_chrY	CAT	exon	16316835	16316896	.	+	.	source_transcript=ENST00000731061.1;source_transcript_name=ENST00000731061;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731061.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731061.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001296;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001296;transcript_name=HG003_chrY_T0001296;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001296:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16316897	16321120	.	+	.	source_transcript=ENST00000731061.1;source_transcript_name=ENST00000731061;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731061.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731061.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001296;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001296;transcript_name=HG003_chrY_T0001296;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001296:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16321121	16321202	.	+	.	source_transcript=ENST00000731061.1;source_transcript_name=ENST00000731061;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731061.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731061.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001296;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001296;transcript_name=HG003_chrY_T0001296;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001296:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16321203	16408046	.	+	.	source_transcript=ENST00000731061.1;source_transcript_name=ENST00000731061;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731061.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731061.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001296;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001296;transcript_name=HG003_chrY_T0001296;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001296:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16408047	16408187	.	+	.	source_transcript=ENST00000731061.1;source_transcript_name=ENST00000731061;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731061.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731061.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001296;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001296;transcript_name=HG003_chrY_T0001296;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001296:2;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16408188	16410439	.	+	.	source_transcript=ENST00000731061.1;source_transcript_name=ENST00000731061;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731061.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731061.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001296;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001296;transcript_name=HG003_chrY_T0001296;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001296:2;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16410440	16410561	.	+	.	source_transcript=ENST00000731061.1;source_transcript_name=ENST00000731061;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731061.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731061.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001296;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001296;transcript_name=HG003_chrY_T0001296;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001296:3;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16410562	16427596	.	+	.	source_transcript=ENST00000731061.1;source_transcript_name=ENST00000731061;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731061.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731061.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001296;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001296;transcript_name=HG003_chrY_T0001296;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001296:3;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16427597	16427966	.	+	.	source_transcript=ENST00000731061.1;source_transcript_name=ENST00000731061;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731061.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731061.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001296;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001296;transcript_name=HG003_chrY_T0001296;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001296:4;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	16316841	16429974	1000	+	.	source_transcript=ENST00000731060.1;source_transcript_name=ENST00000731060;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731060.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001297;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_G0000432;transcript_name=HG003_chrY_T0001297;gene_name=ENSG00000295583;ID=HG003_chrY_T0001297;Name=ENSG00000295583
HG003_chrY	CAT	exon	16316841	16316896	.	+	.	source_transcript=ENST00000731060.1;source_transcript_name=ENST00000731060;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731060.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001297;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001297;transcript_name=HG003_chrY_T0001297;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001297:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16316897	16321120	.	+	.	source_transcript=ENST00000731060.1;source_transcript_name=ENST00000731060;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731060.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001297;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001297;transcript_name=HG003_chrY_T0001297;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001297:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16321121	16321202	.	+	.	source_transcript=ENST00000731060.1;source_transcript_name=ENST00000731060;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731060.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001297;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001297;transcript_name=HG003_chrY_T0001297;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001297:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16321203	16408046	.	+	.	source_transcript=ENST00000731060.1;source_transcript_name=ENST00000731060;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731060.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001297;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001297;transcript_name=HG003_chrY_T0001297;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001297:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16408047	16408187	.	+	.	source_transcript=ENST00000731060.1;source_transcript_name=ENST00000731060;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731060.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001297;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001297;transcript_name=HG003_chrY_T0001297;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001297:2;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16408188	16410439	.	+	.	source_transcript=ENST00000731060.1;source_transcript_name=ENST00000731060;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731060.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001297;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001297;transcript_name=HG003_chrY_T0001297;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001297:2;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16410440	16410561	.	+	.	source_transcript=ENST00000731060.1;source_transcript_name=ENST00000731060;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731060.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001297;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001297;transcript_name=HG003_chrY_T0001297;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001297:3;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16410562	16427596	.	+	.	source_transcript=ENST00000731060.1;source_transcript_name=ENST00000731060;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731060.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001297;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001297;transcript_name=HG003_chrY_T0001297;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001297:3;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16427597	16427733	.	+	.	source_transcript=ENST00000731060.1;source_transcript_name=ENST00000731060;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731060.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001297;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001297;transcript_name=HG003_chrY_T0001297;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001297:4;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16427734	16429857	.	+	.	source_transcript=ENST00000731060.1;source_transcript_name=ENST00000731060;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731060.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001297;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001297;transcript_name=HG003_chrY_T0001297;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001297:4;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16429858	16429974	.	+	.	source_transcript=ENST00000731060.1;source_transcript_name=ENST00000731060;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731060.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731060.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001297;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001297;transcript_name=HG003_chrY_T0001297;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001297:5;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	16316860	16322510	1000	+	.	source_transcript=ENST00000731062.1;source_transcript_name=ENST00000731062;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731062.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001298;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_G0000432;transcript_name=HG003_chrY_T0001298;gene_name=ENSG00000295583;ID=HG003_chrY_T0001298;Name=ENSG00000295583
HG003_chrY	CAT	exon	16316860	16316896	.	+	.	source_transcript=ENST00000731062.1;source_transcript_name=ENST00000731062;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001298;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001298;transcript_name=HG003_chrY_T0001298;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001298:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16316897	16321120	.	+	.	source_transcript=ENST00000731062.1;source_transcript_name=ENST00000731062;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001298;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001298;transcript_name=HG003_chrY_T0001298;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001298:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16321121	16321202	.	+	.	source_transcript=ENST00000731062.1;source_transcript_name=ENST00000731062;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001298;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001298;transcript_name=HG003_chrY_T0001298;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001298:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16321203	16321525	.	+	.	source_transcript=ENST00000731062.1;source_transcript_name=ENST00000731062;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001298;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001298;transcript_name=HG003_chrY_T0001298;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001298:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16321526	16322510	.	+	.	source_transcript=ENST00000731062.1;source_transcript_name=ENST00000731062;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731062.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731062.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001298;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001298;transcript_name=HG003_chrY_T0001298;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001298:2;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	16316868	16321335	1000	+	.	source_transcript=ENST00000731065.1;source_transcript_name=ENST00000731065;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731065.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001299;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_G0000432;transcript_name=HG003_chrY_T0001299;gene_name=ENSG00000295583;ID=HG003_chrY_T0001299;Name=ENSG00000295583
HG003_chrY	CAT	exon	16316868	16317668	.	+	.	source_transcript=ENST00000731065.1;source_transcript_name=ENST00000731065;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001299;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001299;transcript_name=HG003_chrY_T0001299;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001299:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16317669	16321120	.	+	.	source_transcript=ENST00000731065.1;source_transcript_name=ENST00000731065;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001299;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001299;transcript_name=HG003_chrY_T0001299;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001299:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16321121	16321335	.	+	.	source_transcript=ENST00000731065.1;source_transcript_name=ENST00000731065;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001299;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001299;transcript_name=HG003_chrY_T0001299;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001299:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	16317033	16322510	1000	+	.	source_transcript=ENST00000731063.1;source_transcript_name=ENST00000731063;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731063.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731063.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001300;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_G0000432;transcript_name=HG003_chrY_T0001300;gene_name=ENSG00000295583;ID=HG003_chrY_T0001300;Name=ENSG00000295583
HG003_chrY	CAT	exon	16317033	16317668	.	+	.	source_transcript=ENST00000731063.1;source_transcript_name=ENST00000731063;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731063.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731063.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001300;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001300;transcript_name=HG003_chrY_T0001300;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001300:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16317669	16321120	.	+	.	source_transcript=ENST00000731063.1;source_transcript_name=ENST00000731063;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731063.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731063.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001300;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001300;transcript_name=HG003_chrY_T0001300;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001300:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16321121	16321202	.	+	.	source_transcript=ENST00000731063.1;source_transcript_name=ENST00000731063;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731063.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731063.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001300;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001300;transcript_name=HG003_chrY_T0001300;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001300:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16321203	16321525	.	+	.	source_transcript=ENST00000731063.1;source_transcript_name=ENST00000731063;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731063.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731063.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001300;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001300;transcript_name=HG003_chrY_T0001300;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001300:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16321526	16322510	.	+	.	source_transcript=ENST00000731063.1;source_transcript_name=ENST00000731063;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731063.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731063.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001300;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001300;transcript_name=HG003_chrY_T0001300;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001300:2;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	16317163	16318205	1000	+	.	source_transcript=ENST00000731067.1;source_transcript_name=ENST00000731067;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731067.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731067.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001301;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_G0000432;transcript_name=HG003_chrY_T0001301;gene_name=ENSG00000295583;ID=HG003_chrY_T0001301;Name=ENSG00000295583
HG003_chrY	CAT	exon	16317163	16317668	.	+	.	source_transcript=ENST00000731067.1;source_transcript_name=ENST00000731067;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731067.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731067.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001301;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001301;transcript_name=HG003_chrY_T0001301;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001301:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16317669	16317752	.	+	.	source_transcript=ENST00000731067.1;source_transcript_name=ENST00000731067;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731067.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731067.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001301;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001301;transcript_name=HG003_chrY_T0001301;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001301:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16317753	16318205	.	+	.	source_transcript=ENST00000731067.1;source_transcript_name=ENST00000731067;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731067.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731067.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001301;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001301;transcript_name=HG003_chrY_T0001301;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001301:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	16317163	16321662	1000	+	.	source_transcript=ENST00000731064.1;source_transcript_name=ENST00000731064;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731064.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731064.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001302;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_G0000432;transcript_name=HG003_chrY_T0001302;gene_name=ENSG00000295583;ID=HG003_chrY_T0001302;Name=ENSG00000295583
HG003_chrY	CAT	exon	16317163	16317312	.	+	.	source_transcript=ENST00000731064.1;source_transcript_name=ENST00000731064;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731064.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731064.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001302;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001302;transcript_name=HG003_chrY_T0001302;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001302:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16317313	16321120	.	+	.	source_transcript=ENST00000731064.1;source_transcript_name=ENST00000731064;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731064.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731064.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001302;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001302;transcript_name=HG003_chrY_T0001302;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001302:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16321121	16321202	.	+	.	source_transcript=ENST00000731064.1;source_transcript_name=ENST00000731064;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731064.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731064.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001302;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001302;transcript_name=HG003_chrY_T0001302;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001302:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16321203	16321525	.	+	.	source_transcript=ENST00000731064.1;source_transcript_name=ENST00000731064;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731064.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731064.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001302;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001302;transcript_name=HG003_chrY_T0001302;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001302:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16321526	16321662	.	+	.	source_transcript=ENST00000731064.1;source_transcript_name=ENST00000731064;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731064.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731064.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001302;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001302;transcript_name=HG003_chrY_T0001302;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001302:2;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	16317167	16321335	1000	+	.	source_transcript=ENST00000731066.1;source_transcript_name=ENST00000731066;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731066.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731066.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001303;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_G0000432;transcript_name=HG003_chrY_T0001303;gene_name=ENSG00000295583;ID=HG003_chrY_T0001303;Name=ENSG00000295583
HG003_chrY	CAT	exon	16317167	16317668	.	+	.	source_transcript=ENST00000731066.1;source_transcript_name=ENST00000731066;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731066.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731066.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001303;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001303;transcript_name=HG003_chrY_T0001303;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001303:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16317669	16320790	.	+	.	source_transcript=ENST00000731066.1;source_transcript_name=ENST00000731066;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731066.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731066.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001303;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001303;transcript_name=HG003_chrY_T0001303;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001303:0;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16320791	16320910	.	+	.	source_transcript=ENST00000731066.1;source_transcript_name=ENST00000731066;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731066.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731066.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001303;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001303;transcript_name=HG003_chrY_T0001303;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001303:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16320911	16321120	.	+	.	source_transcript=ENST00000731066.1;source_transcript_name=ENST00000731066;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731066.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731066.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001303;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001303;transcript_name=HG003_chrY_T0001303;gene_name=ENSG00000295583;ID=intron:HG003_chrY_T0001303:1;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16321121	16321335	.	+	.	source_transcript=ENST00000731066.1;source_transcript_name=ENST00000731066;source_gene=ENSG00000295583.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295583.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000731066.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000731066.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295583;transcript_id=HG003_chrY_T0001303;gene_id=HG003_chrY_G0000432;Parent=HG003_chrY_T0001303;transcript_name=HG003_chrY_T0001303;gene_name=ENSG00000295583;ID=exon:HG003_chrY_T0001303:2;Name=ENSG00000295583;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	16408045	16454159	.	+	.	source_gene_common_name=STSP1;source_gene=ENSG00000227166.1;gene_id=HG003_chrY_G0000433;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=STSP1;gene_sources=liftoff;ID=HG003_chrY_G0000433;Name=STSP1
HG003_chrY	CAT	transcript	16408045	16454159	1000	+	.	source_transcript=ENST00000412493.1;source_transcript_name=STSP1-201;source_gene=ENSG00000227166.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227166.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000412493.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412493.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=STSP1;transcript_id=HG003_chrY_T0001304;gene_id=HG003_chrY_G0000433;Parent=HG003_chrY_G0000433;transcript_name=HG003_chrY_T0001304;gene_name=STSP1;ID=HG003_chrY_T0001304;Name=STSP1
HG003_chrY	CAT	exon	16408045	16408187	.	+	.	source_transcript=ENST00000412493.1;source_transcript_name=STSP1-201;source_gene=ENSG00000227166.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227166.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000412493.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412493.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=STSP1;transcript_id=HG003_chrY_T0001304;gene_id=HG003_chrY_G0000433;Parent=HG003_chrY_T0001304;transcript_name=HG003_chrY_T0001304;gene_name=STSP1;ID=exon:HG003_chrY_T0001304:0;Name=STSP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16408188	16410439	.	+	.	source_transcript=ENST00000412493.1;source_transcript_name=STSP1-201;source_gene=ENSG00000227166.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227166.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000412493.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412493.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=STSP1;transcript_id=HG003_chrY_T0001304;gene_id=HG003_chrY_G0000433;Parent=HG003_chrY_T0001304;transcript_name=HG003_chrY_T0001304;gene_name=STSP1;ID=intron:HG003_chrY_T0001304:0;Name=STSP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16410440	16410770	.	+	.	source_transcript=ENST00000412493.1;source_transcript_name=STSP1-201;source_gene=ENSG00000227166.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227166.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000412493.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412493.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=STSP1;transcript_id=HG003_chrY_T0001304;gene_id=HG003_chrY_G0000433;Parent=HG003_chrY_T0001304;transcript_name=HG003_chrY_T0001304;gene_name=STSP1;ID=exon:HG003_chrY_T0001304:1;Name=STSP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16410771	16412408	.	+	.	source_transcript=ENST00000412493.1;source_transcript_name=STSP1-201;source_gene=ENSG00000227166.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227166.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000412493.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412493.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=STSP1;transcript_id=HG003_chrY_T0001304;gene_id=HG003_chrY_G0000433;Parent=HG003_chrY_T0001304;transcript_name=HG003_chrY_T0001304;gene_name=STSP1;ID=intron:HG003_chrY_T0001304:1;Name=STSP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16412409	16412827	.	+	.	source_transcript=ENST00000412493.1;source_transcript_name=STSP1-201;source_gene=ENSG00000227166.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227166.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000412493.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412493.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=STSP1;transcript_id=HG003_chrY_T0001304;gene_id=HG003_chrY_G0000433;Parent=HG003_chrY_T0001304;transcript_name=HG003_chrY_T0001304;gene_name=STSP1;ID=exon:HG003_chrY_T0001304:2;Name=STSP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16412828	16427596	.	+	.	source_transcript=ENST00000412493.1;source_transcript_name=STSP1-201;source_gene=ENSG00000227166.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227166.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000412493.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412493.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=STSP1;transcript_id=HG003_chrY_T0001304;gene_id=HG003_chrY_G0000433;Parent=HG003_chrY_T0001304;transcript_name=HG003_chrY_T0001304;gene_name=STSP1;ID=intron:HG003_chrY_T0001304:2;Name=STSP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16427597	16427753	.	+	.	source_transcript=ENST00000412493.1;source_transcript_name=STSP1-201;source_gene=ENSG00000227166.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227166.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000412493.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412493.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=STSP1;transcript_id=HG003_chrY_T0001304;gene_id=HG003_chrY_G0000433;Parent=HG003_chrY_T0001304;transcript_name=HG003_chrY_T0001304;gene_name=STSP1;ID=exon:HG003_chrY_T0001304:3;Name=STSP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16427754	16454058	.	+	.	source_transcript=ENST00000412493.1;source_transcript_name=STSP1-201;source_gene=ENSG00000227166.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227166.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000412493.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412493.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=STSP1;transcript_id=HG003_chrY_T0001304;gene_id=HG003_chrY_G0000433;Parent=HG003_chrY_T0001304;transcript_name=HG003_chrY_T0001304;gene_name=STSP1;ID=intron:HG003_chrY_T0001304:3;Name=STSP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16454059	16454159	.	+	.	source_transcript=ENST00000412493.1;source_transcript_name=STSP1-201;source_gene=ENSG00000227166.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227166.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000412493.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412493.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=STSP1;transcript_id=HG003_chrY_T0001304;gene_id=HG003_chrY_G0000433;Parent=HG003_chrY_T0001304;transcript_name=HG003_chrY_T0001304;gene_name=STSP1;ID=exon:HG003_chrY_T0001304:4;Name=STSP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	16551142	16559063	.	-	.	source_gene_common_name=ENSG00000295335;source_gene=ENSG00000295335.1;alternative_source_transcripts=ENST00000729374.1,ENST00000729374.1;gene_id=HG003_chrY_G0000434;gene_biotype=lncRNA;gene_name=ENSG00000295335;gene_sources=liftoff;ID=HG003_chrY_G0000434;Name=ENSG00000295335
HG003_chrY	CAT	transcript	16551142	16559063	1000	-	.	source_transcript=ENST00000729374.1;source_transcript_name=ENST00000729374;source_gene=ENSG00000295335.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295335.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729374.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295335;alternative_source_transcripts=ENST00000729374.1,ENST00000729374.1;transcript_id=HG003_chrY_T0001305;gene_id=HG003_chrY_G0000434;Parent=HG003_chrY_G0000434;transcript_name=HG003_chrY_T0001305;gene_name=ENSG00000295335;ID=HG003_chrY_T0001305;Name=ENSG00000295335
HG003_chrY	CAT	exon	16551142	16551496	.	-	.	source_transcript=ENST00000729374.1;source_transcript_name=ENST00000729374;source_gene=ENSG00000295335.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295335.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295335;alternative_source_transcripts=ENST00000729374.1,ENST00000729374.1;transcript_id=HG003_chrY_T0001305;gene_id=HG003_chrY_G0000434;Parent=HG003_chrY_T0001305;transcript_name=HG003_chrY_T0001305;gene_name=ENSG00000295335;ID=exon:HG003_chrY_T0001305:0;Name=ENSG00000295335;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16551497	16559019	.	-	.	source_transcript=ENST00000729374.1;source_transcript_name=ENST00000729374;source_gene=ENSG00000295335.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295335.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295335;alternative_source_transcripts=ENST00000729374.1,ENST00000729374.1;transcript_id=HG003_chrY_T0001305;gene_id=HG003_chrY_G0000434;Parent=HG003_chrY_T0001305;transcript_name=HG003_chrY_T0001305;gene_name=ENSG00000295335;ID=intron:HG003_chrY_T0001305:0;Name=ENSG00000295335;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16559020	16559063	.	-	.	source_transcript=ENST00000729374.1;source_transcript_name=ENST00000729374;source_gene=ENSG00000295335.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295335.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295335;alternative_source_transcripts=ENST00000729374.1,ENST00000729374.1;transcript_id=HG003_chrY_T0001305;gene_id=HG003_chrY_G0000434;Parent=HG003_chrY_T0001305;transcript_name=HG003_chrY_T0001305;gene_name=ENSG00000295335;ID=exon:HG003_chrY_T0001305:1;Name=ENSG00000295335;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	16918766	16985657	.	-	.	source_gene_common_name=ENSG00000300212;source_gene=ENSG00000300212.1;alternative_source_transcripts=ENST00000770119.1,ENST00000770119.1;gene_id=HG003_chrY_G0000435;gene_biotype=lncRNA;gene_name=ENSG00000300212;gene_sources=liftoff;ID=HG003_chrY_G0000435;Name=ENSG00000300212
HG003_chrY	CAT	transcript	16918766	16985657	1000	-	.	source_transcript=ENST00000770119.1;source_transcript_name=ENST00000770119;source_gene=ENSG00000300212.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300212.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770119.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300212;alternative_source_transcripts=ENST00000770119.1,ENST00000770119.1;transcript_id=HG003_chrY_T0001306;gene_id=HG003_chrY_G0000435;Parent=HG003_chrY_G0000435;transcript_name=HG003_chrY_T0001306;gene_name=ENSG00000300212;ID=HG003_chrY_T0001306;Name=ENSG00000300212
HG003_chrY	CAT	exon	16918766	16919463	.	-	.	source_transcript=ENST00000770119.1;source_transcript_name=ENST00000770119;source_gene=ENSG00000300212.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300212.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770119.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300212;alternative_source_transcripts=ENST00000770119.1,ENST00000770119.1;transcript_id=HG003_chrY_T0001306;gene_id=HG003_chrY_G0000435;Parent=HG003_chrY_T0001306;transcript_name=HG003_chrY_T0001306;gene_name=ENSG00000300212;ID=exon:HG003_chrY_T0001306:0;Name=ENSG00000300212;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16919464	16983296	.	-	.	source_transcript=ENST00000770119.1;source_transcript_name=ENST00000770119;source_gene=ENSG00000300212.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300212.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770119.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300212;alternative_source_transcripts=ENST00000770119.1,ENST00000770119.1;transcript_id=HG003_chrY_T0001306;gene_id=HG003_chrY_G0000435;Parent=HG003_chrY_T0001306;transcript_name=HG003_chrY_T0001306;gene_name=ENSG00000300212;ID=intron:HG003_chrY_T0001306:0;Name=ENSG00000300212;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16983297	16983441	.	-	.	source_transcript=ENST00000770119.1;source_transcript_name=ENST00000770119;source_gene=ENSG00000300212.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300212.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770119.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300212;alternative_source_transcripts=ENST00000770119.1,ENST00000770119.1;transcript_id=HG003_chrY_T0001306;gene_id=HG003_chrY_G0000435;Parent=HG003_chrY_T0001306;transcript_name=HG003_chrY_T0001306;gene_name=ENSG00000300212;ID=exon:HG003_chrY_T0001306:1;Name=ENSG00000300212;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16983442	16984982	.	-	.	source_transcript=ENST00000770119.1;source_transcript_name=ENST00000770119;source_gene=ENSG00000300212.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300212.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770119.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300212;alternative_source_transcripts=ENST00000770119.1,ENST00000770119.1;transcript_id=HG003_chrY_T0001306;gene_id=HG003_chrY_G0000435;Parent=HG003_chrY_T0001306;transcript_name=HG003_chrY_T0001306;gene_name=ENSG00000300212;ID=intron:HG003_chrY_T0001306:1;Name=ENSG00000300212;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16984983	16985162	.	-	.	source_transcript=ENST00000770119.1;source_transcript_name=ENST00000770119;source_gene=ENSG00000300212.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300212.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770119.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300212;alternative_source_transcripts=ENST00000770119.1,ENST00000770119.1;transcript_id=HG003_chrY_T0001306;gene_id=HG003_chrY_G0000435;Parent=HG003_chrY_T0001306;transcript_name=HG003_chrY_T0001306;gene_name=ENSG00000300212;ID=exon:HG003_chrY_T0001306:2;Name=ENSG00000300212;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	16985163	16985382	.	-	.	source_transcript=ENST00000770119.1;source_transcript_name=ENST00000770119;source_gene=ENSG00000300212.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300212.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770119.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300212;alternative_source_transcripts=ENST00000770119.1,ENST00000770119.1;transcript_id=HG003_chrY_T0001306;gene_id=HG003_chrY_G0000435;Parent=HG003_chrY_T0001306;transcript_name=HG003_chrY_T0001306;gene_name=ENSG00000300212;ID=intron:HG003_chrY_T0001306:2;Name=ENSG00000300212;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	16985383	16985657	.	-	.	source_transcript=ENST00000770119.1;source_transcript_name=ENST00000770119;source_gene=ENSG00000300212.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300212.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000770119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000770119.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300212;alternative_source_transcripts=ENST00000770119.1,ENST00000770119.1;transcript_id=HG003_chrY_T0001306;gene_id=HG003_chrY_G0000435;Parent=HG003_chrY_T0001306;transcript_name=HG003_chrY_T0001306;gene_name=ENSG00000300212;ID=exon:HG003_chrY_T0001306:3;Name=ENSG00000300212;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	16999095	16999226	.	-	.	source_gene_common_name=ENSG00000252689;source_gene=ENSG00000252689.1;alternative_source_transcripts=ENST00000516880.1,ENST00000516880.1;gene_id=HG003_chrY_G0000436;gene_biotype=snoRNA;gene_name=ENSG00000252689;gene_sources=liftoff;ID=HG003_chrY_G0000436;Name=ENSG00000252689
HG003_chrY	CAT	transcript	16999095	16999226	1000	-	.	source_transcript=ENST00000516880.1;source_transcript_name=ENST00000516880;source_gene=ENSG00000252689.1;source_gene_biotype=snoRNA;original_gene_id=ENSG00000252689.1;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=ENST00000516880.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516880.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000252689;alternative_source_transcripts=ENST00000516880.1,ENST00000516880.1;transcript_id=HG003_chrY_T0001307;gene_id=HG003_chrY_G0000436;Parent=HG003_chrY_G0000436;transcript_name=HG003_chrY_T0001307;gene_name=ENSG00000252689;ID=HG003_chrY_T0001307;Name=ENSG00000252689
HG003_chrY	CAT	exon	16999095	16999226	.	-	.	source_transcript=ENST00000516880.1;source_transcript_name=ENST00000516880;source_gene=ENSG00000252689.1;source_gene_biotype=snoRNA;original_gene_id=ENSG00000252689.1;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=ENST00000516880.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516880.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000252689;alternative_source_transcripts=ENST00000516880.1,ENST00000516880.1;transcript_id=HG003_chrY_T0001307;gene_id=HG003_chrY_G0000436;Parent=HG003_chrY_T0001307;transcript_name=HG003_chrY_T0001307;gene_name=ENSG00000252689;ID=exon:HG003_chrY_T0001307:0;Name=ENSG00000252689;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	17046994	17052153	.	+	.	source_gene_common_name=ENSG00000309341;source_gene=ENSG00000309341.1;alternative_source_transcripts=ENST00000840368.1,ENST00000840368.1;gene_id=HG003_chrY_G0000437;gene_biotype=lncRNA;gene_name=ENSG00000309341;gene_sources=liftoff;ID=HG003_chrY_G0000437;Name=ENSG00000309341
HG003_chrY	CAT	transcript	17046994	17052153	1000	+	.	source_transcript=ENST00000840368.1;source_transcript_name=ENST00000840368;source_gene=ENSG00000309341.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309341.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840368.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309341;alternative_source_transcripts=ENST00000840368.1,ENST00000840368.1;transcript_id=HG003_chrY_T0001308;gene_id=HG003_chrY_G0000437;Parent=HG003_chrY_G0000437;transcript_name=HG003_chrY_T0001308;gene_name=ENSG00000309341;ID=HG003_chrY_T0001308;Name=ENSG00000309341
HG003_chrY	CAT	exon	17046994	17047149	.	+	.	source_transcript=ENST00000840368.1;source_transcript_name=ENST00000840368;source_gene=ENSG00000309341.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309341.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840368.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309341;alternative_source_transcripts=ENST00000840368.1,ENST00000840368.1;transcript_id=HG003_chrY_T0001308;gene_id=HG003_chrY_G0000437;Parent=HG003_chrY_T0001308;transcript_name=HG003_chrY_T0001308;gene_name=ENSG00000309341;ID=exon:HG003_chrY_T0001308:0;Name=ENSG00000309341;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	17047150	17051978	.	+	.	source_transcript=ENST00000840368.1;source_transcript_name=ENST00000840368;source_gene=ENSG00000309341.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309341.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840368.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309341;alternative_source_transcripts=ENST00000840368.1,ENST00000840368.1;transcript_id=HG003_chrY_T0001308;gene_id=HG003_chrY_G0000437;Parent=HG003_chrY_T0001308;transcript_name=HG003_chrY_T0001308;gene_name=ENSG00000309341;ID=intron:HG003_chrY_T0001308:0;Name=ENSG00000309341;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	17051979	17052153	.	+	.	source_transcript=ENST00000840368.1;source_transcript_name=ENST00000840368;source_gene=ENSG00000309341.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309341.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840368.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309341;alternative_source_transcripts=ENST00000840368.1,ENST00000840368.1;transcript_id=HG003_chrY_T0001308;gene_id=HG003_chrY_G0000437;Parent=HG003_chrY_T0001308;transcript_name=HG003_chrY_T0001308;gene_name=ENSG00000309341;ID=exon:HG003_chrY_T0001308:1;Name=ENSG00000309341;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	17109812	17109918	.	+	.	source_gene_common_name=RNU6-109P;source_gene=ENSG00000252173.1;alternative_source_transcripts=ENST00000516364.1,ENST00000516364.1;gene_id=HG003_chrY_G0000438;gene_biotype=snRNA;gene_name=RNU6-109P;gene_sources=liftoff;ID=HG003_chrY_G0000438;Name=RNU6-109P
HG003_chrY	CAT	transcript	17109812	17109918	1000	+	.	source_transcript=ENST00000516364.1;source_transcript_name=RNU6-109P-201;source_gene=ENSG00000252173.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252173.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516364.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516364.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-109P;alternative_source_transcripts=ENST00000516364.1,ENST00000516364.1;transcript_id=HG003_chrY_T0001309;gene_id=HG003_chrY_G0000438;Parent=HG003_chrY_G0000438;transcript_name=HG003_chrY_T0001309;gene_name=RNU6-109P;ID=HG003_chrY_T0001309;Name=RNU6-109P
HG003_chrY	CAT	exon	17109812	17109918	.	+	.	source_transcript=ENST00000516364.1;source_transcript_name=RNU6-109P-201;source_gene=ENSG00000252173.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252173.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516364.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516364.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-109P;alternative_source_transcripts=ENST00000516364.1,ENST00000516364.1;transcript_id=HG003_chrY_T0001309;gene_id=HG003_chrY_G0000438;Parent=HG003_chrY_T0001309;transcript_name=HG003_chrY_T0001309;gene_name=RNU6-109P;ID=exon:HG003_chrY_T0001309:0;Name=RNU6-109P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	17197142	17197248	.	-	.	source_gene_common_name=RNU6-184P;source_gene=ENSG00000252323.1;alternative_source_transcripts=ENST00000516514.1,ENST00000516514.1;gene_id=HG003_chrY_G0000439;gene_biotype=snRNA;gene_name=RNU6-184P;gene_sources=liftoff;ID=HG003_chrY_G0000439;Name=RNU6-184P
HG003_chrY	CAT	transcript	17197142	17197248	1000	-	.	source_transcript=ENST00000516514.1;source_transcript_name=RNU6-184P-201;source_gene=ENSG00000252323.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252323.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516514.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516514.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-184P;alternative_source_transcripts=ENST00000516514.1,ENST00000516514.1;transcript_id=HG003_chrY_T0001310;gene_id=HG003_chrY_G0000439;Parent=HG003_chrY_G0000439;transcript_name=HG003_chrY_T0001310;gene_name=RNU6-184P;ID=HG003_chrY_T0001310;Name=RNU6-184P
HG003_chrY	CAT	exon	17197142	17197248	.	-	.	source_transcript=ENST00000516514.1;source_transcript_name=RNU6-184P-201;source_gene=ENSG00000252323.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252323.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516514.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516514.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-184P;alternative_source_transcripts=ENST00000516514.1,ENST00000516514.1;transcript_id=HG003_chrY_T0001310;gene_id=HG003_chrY_G0000439;Parent=HG003_chrY_T0001310;transcript_name=HG003_chrY_T0001310;gene_name=RNU6-184P;ID=exon:HG003_chrY_T0001310:0;Name=RNU6-184P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	17254898	17260057	.	-	.	source_gene_common_name=ENSG00000309341;source_gene=ENSG00000309341.1;gene_id=HG003_chrY_G0000440;gene_biotype=lncRNA;gene_name=ENSG00000309341;gene_sources=liftoff;ID=HG003_chrY_G0000440;Name=ENSG00000309341
HG003_chrY	CAT	transcript	17254898	17260057	1000	-	.	source_transcript=ENST00000840368.1;source_transcript_name=ENST00000840368;source_gene=ENSG00000309341.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309341.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840368.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309341;transcript_id=HG003_chrY_T0001311;gene_id=HG003_chrY_G0000440;Parent=HG003_chrY_G0000440;transcript_name=HG003_chrY_T0001311;gene_name=ENSG00000309341;ID=HG003_chrY_T0001311;Name=ENSG00000309341
HG003_chrY	CAT	exon	17254898	17255072	.	-	.	source_transcript=ENST00000840368.1;source_transcript_name=ENST00000840368;source_gene=ENSG00000309341.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309341.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840368.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309341;transcript_id=HG003_chrY_T0001311;gene_id=HG003_chrY_G0000440;Parent=HG003_chrY_T0001311;transcript_name=HG003_chrY_T0001311;gene_name=ENSG00000309341;ID=exon:HG003_chrY_T0001311:0;Name=ENSG00000309341;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	17255073	17259901	.	-	.	source_transcript=ENST00000840368.1;source_transcript_name=ENST00000840368;source_gene=ENSG00000309341.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309341.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840368.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309341;transcript_id=HG003_chrY_T0001311;gene_id=HG003_chrY_G0000440;Parent=HG003_chrY_T0001311;transcript_name=HG003_chrY_T0001311;gene_name=ENSG00000309341;ID=intron:HG003_chrY_T0001311:0;Name=ENSG00000309341;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	17259902	17260057	.	-	.	source_transcript=ENST00000840368.1;source_transcript_name=ENST00000840368;source_gene=ENSG00000309341.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000309341.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840368.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840368.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000309341;transcript_id=HG003_chrY_T0001311;gene_id=HG003_chrY_G0000440;Parent=HG003_chrY_T0001311;transcript_name=HG003_chrY_T0001311;gene_name=ENSG00000309341;ID=exon:HG003_chrY_T0001311:1;Name=ENSG00000309341;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	17460595	17505396	.	-	.	source_gene_common_name=ENSG00000286201;source_gene=ENSG00000286201.2;alternative_source_transcripts=ENST00000651678.1,ENST00000651678.1;gene_id=HG003_chrY_G0000441;gene_biotype=lncRNA;gene_name=ENSG00000286201;gene_sources=liftoff;ID=HG003_chrY_G0000441;Name=ENSG00000286201
HG003_chrY	CAT	transcript	17460595	17505396	1000	-	.	source_transcript=ENST00000651678.1;source_transcript_name=ENST00000651678;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651678.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651678.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000651678.1,ENST00000651678.1;transcript_id=HG003_chrY_T0001312;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_G0000441;transcript_name=HG003_chrY_T0001312;gene_name=ENSG00000286201;ID=HG003_chrY_T0001312;Name=ENSG00000286201
HG003_chrY	CAT	exon	17460595	17466708	.	-	.	source_transcript=ENST00000651678.1;source_transcript_name=ENST00000651678;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651678.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651678.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000651678.1,ENST00000651678.1;transcript_id=HG003_chrY_T0001312;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_T0001312;transcript_name=HG003_chrY_T0001312;gene_name=ENSG00000286201;ID=exon:HG003_chrY_T0001312:0;Name=ENSG00000286201;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	17466709	17489402	.	-	.	source_transcript=ENST00000651678.1;source_transcript_name=ENST00000651678;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651678.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651678.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000651678.1,ENST00000651678.1;transcript_id=HG003_chrY_T0001312;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_T0001312;transcript_name=HG003_chrY_T0001312;gene_name=ENSG00000286201;ID=intron:HG003_chrY_T0001312:0;Name=ENSG00000286201;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	17489403	17489445	.	-	.	source_transcript=ENST00000651678.1;source_transcript_name=ENST00000651678;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651678.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651678.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000651678.1,ENST00000651678.1;transcript_id=HG003_chrY_T0001312;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_T0001312;transcript_name=HG003_chrY_T0001312;gene_name=ENSG00000286201;ID=exon:HG003_chrY_T0001312:1;Name=ENSG00000286201;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	17489446	17504900	.	-	.	source_transcript=ENST00000651678.1;source_transcript_name=ENST00000651678;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651678.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651678.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000651678.1,ENST00000651678.1;transcript_id=HG003_chrY_T0001312;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_T0001312;transcript_name=HG003_chrY_T0001312;gene_name=ENSG00000286201;ID=intron:HG003_chrY_T0001312:1;Name=ENSG00000286201;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	17504901	17505396	.	-	.	source_transcript=ENST00000651678.1;source_transcript_name=ENST00000651678;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651678.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651678.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000651678.1,ENST00000651678.1;transcript_id=HG003_chrY_T0001312;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_T0001312;transcript_name=HG003_chrY_T0001312;gene_name=ENSG00000286201;ID=exon:HG003_chrY_T0001312:2;Name=ENSG00000286201;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	17462004	17489552	1000	-	.	source_transcript=ENST00000835478.1;source_transcript_name=ENST00000835478;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000835478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000835478.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000835478.1,ENST00000835478.1;transcript_id=HG003_chrY_T0001313;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_G0000441;transcript_name=HG003_chrY_T0001313;gene_name=ENSG00000286201;ID=HG003_chrY_T0001313;Name=ENSG00000286201
HG003_chrY	CAT	exon	17462004	17462449	.	-	.	source_transcript=ENST00000835478.1;source_transcript_name=ENST00000835478;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000835478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000835478.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000835478.1,ENST00000835478.1;transcript_id=HG003_chrY_T0001313;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_T0001313;transcript_name=HG003_chrY_T0001313;gene_name=ENSG00000286201;ID=exon:HG003_chrY_T0001313:0;Name=ENSG00000286201;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	17462450	17466591	.	-	.	source_transcript=ENST00000835478.1;source_transcript_name=ENST00000835478;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000835478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000835478.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000835478.1,ENST00000835478.1;transcript_id=HG003_chrY_T0001313;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_T0001313;transcript_name=HG003_chrY_T0001313;gene_name=ENSG00000286201;ID=intron:HG003_chrY_T0001313:0;Name=ENSG00000286201;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	17466592	17466708	.	-	.	source_transcript=ENST00000835478.1;source_transcript_name=ENST00000835478;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000835478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000835478.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000835478.1,ENST00000835478.1;transcript_id=HG003_chrY_T0001313;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_T0001313;transcript_name=HG003_chrY_T0001313;gene_name=ENSG00000286201;ID=exon:HG003_chrY_T0001313:1;Name=ENSG00000286201;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	17466709	17480335	.	-	.	source_transcript=ENST00000835478.1;source_transcript_name=ENST00000835478;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000835478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000835478.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000835478.1,ENST00000835478.1;transcript_id=HG003_chrY_T0001313;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_T0001313;transcript_name=HG003_chrY_T0001313;gene_name=ENSG00000286201;ID=intron:HG003_chrY_T0001313:1;Name=ENSG00000286201;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	17480336	17480427	.	-	.	source_transcript=ENST00000835478.1;source_transcript_name=ENST00000835478;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000835478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000835478.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000835478.1,ENST00000835478.1;transcript_id=HG003_chrY_T0001313;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_T0001313;transcript_name=HG003_chrY_T0001313;gene_name=ENSG00000286201;ID=exon:HG003_chrY_T0001313:2;Name=ENSG00000286201;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	17480428	17489402	.	-	.	source_transcript=ENST00000835478.1;source_transcript_name=ENST00000835478;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000835478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000835478.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000835478.1,ENST00000835478.1;transcript_id=HG003_chrY_T0001313;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_T0001313;transcript_name=HG003_chrY_T0001313;gene_name=ENSG00000286201;ID=intron:HG003_chrY_T0001313:2;Name=ENSG00000286201;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	17489403	17489552	.	-	.	source_transcript=ENST00000835478.1;source_transcript_name=ENST00000835478;source_gene=ENSG00000286201.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286201.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000835478.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000835478.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286201;alternative_source_transcripts=ENST00000835478.1,ENST00000835478.1;transcript_id=HG003_chrY_T0001313;gene_id=HG003_chrY_G0000441;Parent=HG003_chrY_T0001313;transcript_name=HG003_chrY_T0001313;gene_name=ENSG00000286201;ID=exon:HG003_chrY_T0001313:3;Name=ENSG00000286201;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18053644	18054470	.	+	.	source_gene_common_name=SURF6P1;source_gene=ENSG00000228518.1;alternative_source_transcripts=ENST00000451854.1,ENST00000451854.1;gene_id=HG003_chrY_G0000442;gene_biotype=processed_pseudogene;gene_name=SURF6P1;gene_sources=liftoff;ID=HG003_chrY_G0000442;Name=SURF6P1
HG003_chrY	CAT	transcript	18053644	18054470	1000	+	.	source_transcript=ENST00000451854.1;source_transcript_name=SURF6P1-201;source_gene=ENSG00000228518.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228518.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000451854.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451854.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SURF6P1;alternative_source_transcripts=ENST00000451854.1,ENST00000451854.1;transcript_id=HG003_chrY_T0001314;gene_id=HG003_chrY_G0000442;Parent=HG003_chrY_G0000442;transcript_name=HG003_chrY_T0001314;gene_name=SURF6P1;ID=HG003_chrY_T0001314;Name=SURF6P1
HG003_chrY	CAT	exon	18053644	18054470	.	+	.	source_transcript=ENST00000451854.1;source_transcript_name=SURF6P1-201;source_gene=ENSG00000228518.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228518.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000451854.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451854.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SURF6P1;alternative_source_transcripts=ENST00000451854.1,ENST00000451854.1;transcript_id=HG003_chrY_T0001314;gene_id=HG003_chrY_G0000442;Parent=HG003_chrY_T0001314;transcript_name=HG003_chrY_T0001314;gene_name=SURF6P1;ID=exon:HG003_chrY_T0001314:0;Name=SURF6P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18325685	18326020	.	-	.	source_gene_common_name=ELOCP35;source_gene=ENSG00000271595.1;alternative_source_transcripts=ENST00000604289.1;gene_id=HG003_chrY_G0000443;gene_biotype=processed_pseudogene;gene_name=ELOCP35;gene_sources=liftoff;ID=HG003_chrY_G0000443;Name=ELOCP35
HG003_chrY	CAT	transcript	18325685	18326020	1000	-	.	source_transcript=ENST00000604289.1;source_transcript_name=ELOCP35-201;source_gene=ENSG00000271595.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000271595.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000604289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000604289.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP35;alternative_source_transcripts=ENST00000604289.1;transcript_id=HG003_chrY_T0001315;gene_id=HG003_chrY_G0000443;Parent=HG003_chrY_G0000443;transcript_name=HG003_chrY_T0001315;gene_name=ELOCP35;ID=HG003_chrY_T0001315;Name=ELOCP35
HG003_chrY	CAT	exon	18325685	18326020	.	-	.	source_transcript=ENST00000604289.1;source_transcript_name=ELOCP35-201;source_gene=ENSG00000271595.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000271595.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000604289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000604289.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP35;alternative_source_transcripts=ENST00000604289.1;transcript_id=HG003_chrY_T0001315;gene_id=HG003_chrY_G0000443;Parent=HG003_chrY_T0001315;transcript_name=HG003_chrY_T0001315;gene_name=ELOCP35;ID=exon:HG003_chrY_T0001315:0;Name=ELOCP35;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18361780	18377983	.	+	.	source_gene_common_name=FAM41AY2;source_gene=ENSG00000290726.3;gene_id=HG003_chrY_G0000444;gene_biotype=lncRNA;gene_name=FAM41AY2;gene_sources=liftoff;ID=HG003_chrY_G0000444;Name=FAM41AY2
HG003_chrY	CAT	transcript	18361780	18375832	1000	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_G0000444;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=HG003_chrY_T0001316;Name=FAM41AY2
HG003_chrY	CAT	exon	18361780	18361937	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0001316:0;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18361938	18362532	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0001316:0;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18362533	18362582	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0001316:1;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18362583	18373911	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0001316:1;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18373912	18374040	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0001316:2;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18374041	18374287	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0001316:2;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18374288	18374381	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0001316:3;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18374382	18374974	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0001316:3;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18374975	18375145	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0001316:4;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18375146	18375254	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0001316:4;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18375255	18375348	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0001316:5;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18375349	18375622	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0001316:5;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18375623	18375832	.	+	.	source_transcript=ENST00000641637.2;source_transcript_name=FAM41AY2-201;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000641637.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000641637.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001316;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001316;transcript_name=HG003_chrY_T0001316;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0001316:6;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18375702	18377983	1000	+	.	source_transcript=ENST00000794388.1;source_transcript_name=FAM41AY2-202;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000794388.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000794388.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001318;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_G0000444;transcript_name=HG003_chrY_T0001318;gene_name=FAM41AY2;ID=HG003_chrY_T0001318;Name=FAM41AY2
HG003_chrY	CAT	exon	18375702	18375832	.	+	.	source_transcript=ENST00000794388.1;source_transcript_name=FAM41AY2-202;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000794388.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000794388.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001318;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001318;transcript_name=HG003_chrY_T0001318;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0001318:0;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18375833	18376525	.	+	.	source_transcript=ENST00000794388.1;source_transcript_name=FAM41AY2-202;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000794388.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000794388.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001318;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001318;transcript_name=HG003_chrY_T0001318;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0001318:0;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18376526	18376747	.	+	.	source_transcript=ENST00000794388.1;source_transcript_name=FAM41AY2-202;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000794388.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000794388.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001318;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001318;transcript_name=HG003_chrY_T0001318;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0001318:1;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18376748	18376829	.	+	.	source_transcript=ENST00000794388.1;source_transcript_name=FAM41AY2-202;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000794388.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000794388.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001318;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001318;transcript_name=HG003_chrY_T0001318;gene_name=FAM41AY2;ID=intron:HG003_chrY_T0001318:1;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18376830	18377983	.	+	.	source_transcript=ENST00000794388.1;source_transcript_name=FAM41AY2-202;source_gene=ENSG00000290726.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290726.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000794388.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000794388.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY2;transcript_id=HG003_chrY_T0001318;gene_id=HG003_chrY_G0000444;Parent=HG003_chrY_T0001318;transcript_name=HG003_chrY_T0001318;gene_name=FAM41AY2;ID=exon:HG003_chrY_T0001318:2;Name=FAM41AY2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18375316	18377529	.	+	.	source_gene_common_name=ENSG00000282909;source_gene=ENSG00000282909.3;gene_id=HG003_chrY_G0000445;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000282909;gene_sources=liftoff;ID=HG003_chrY_G0000445;Name=ENSG00000282909
HG003_chrY	CAT	transcript	18375316	18377529	1000	+	.	source_transcript=ENST00000634531.1;source_transcript_name=ENST00000634531;source_gene=ENSG00000282909.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000282909.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000634531.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000634531.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000282909;transcript_id=HG003_chrY_T0001317;gene_id=HG003_chrY_G0000445;Parent=HG003_chrY_G0000445;transcript_name=HG003_chrY_T0001317;gene_name=ENSG00000282909;ID=HG003_chrY_T0001317;Name=ENSG00000282909
HG003_chrY	CAT	exon	18375316	18375524	.	+	.	source_transcript=ENST00000634531.1;source_transcript_name=ENST00000634531;source_gene=ENSG00000282909.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000282909.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000634531.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000634531.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000282909;transcript_id=HG003_chrY_T0001317;gene_id=HG003_chrY_G0000445;Parent=HG003_chrY_T0001317;transcript_name=HG003_chrY_T0001317;gene_name=ENSG00000282909;ID=exon:HG003_chrY_T0001317:0;Name=ENSG00000282909;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18375525	18375567	.	+	.	source_transcript=ENST00000634531.1;source_transcript_name=ENST00000634531;source_gene=ENSG00000282909.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000282909.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000634531.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000634531.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000282909;transcript_id=HG003_chrY_T0001317;gene_id=HG003_chrY_G0000445;Parent=HG003_chrY_T0001317;transcript_name=HG003_chrY_T0001317;gene_name=ENSG00000282909;ID=intron:HG003_chrY_T0001317:0;Name=ENSG00000282909;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18375568	18375832	.	+	.	source_transcript=ENST00000634531.1;source_transcript_name=ENST00000634531;source_gene=ENSG00000282909.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000282909.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000634531.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000634531.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000282909;transcript_id=HG003_chrY_T0001317;gene_id=HG003_chrY_G0000445;Parent=HG003_chrY_T0001317;transcript_name=HG003_chrY_T0001317;gene_name=ENSG00000282909;ID=exon:HG003_chrY_T0001317:1;Name=ENSG00000282909;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18375833	18375921	.	+	.	source_transcript=ENST00000634531.1;source_transcript_name=ENST00000634531;source_gene=ENSG00000282909.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000282909.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000634531.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000634531.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000282909;transcript_id=HG003_chrY_T0001317;gene_id=HG003_chrY_G0000445;Parent=HG003_chrY_T0001317;transcript_name=HG003_chrY_T0001317;gene_name=ENSG00000282909;ID=intron:HG003_chrY_T0001317:1;Name=ENSG00000282909;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18375922	18376041	.	+	.	source_transcript=ENST00000634531.1;source_transcript_name=ENST00000634531;source_gene=ENSG00000282909.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000282909.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000634531.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000634531.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000282909;transcript_id=HG003_chrY_T0001317;gene_id=HG003_chrY_G0000445;Parent=HG003_chrY_T0001317;transcript_name=HG003_chrY_T0001317;gene_name=ENSG00000282909;ID=exon:HG003_chrY_T0001317:2;Name=ENSG00000282909;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18376042	18376366	.	+	.	source_transcript=ENST00000634531.1;source_transcript_name=ENST00000634531;source_gene=ENSG00000282909.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000282909.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000634531.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000634531.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000282909;transcript_id=HG003_chrY_T0001317;gene_id=HG003_chrY_G0000445;Parent=HG003_chrY_T0001317;transcript_name=HG003_chrY_T0001317;gene_name=ENSG00000282909;ID=intron:HG003_chrY_T0001317:2;Name=ENSG00000282909;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18376367	18376461	.	+	.	source_transcript=ENST00000634531.1;source_transcript_name=ENST00000634531;source_gene=ENSG00000282909.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000282909.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000634531.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000634531.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000282909;transcript_id=HG003_chrY_T0001317;gene_id=HG003_chrY_G0000445;Parent=HG003_chrY_T0001317;transcript_name=HG003_chrY_T0001317;gene_name=ENSG00000282909;ID=exon:HG003_chrY_T0001317:3;Name=ENSG00000282909;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18376462	18376829	.	+	.	source_transcript=ENST00000634531.1;source_transcript_name=ENST00000634531;source_gene=ENSG00000282909.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000282909.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000634531.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000634531.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000282909;transcript_id=HG003_chrY_T0001317;gene_id=HG003_chrY_G0000445;Parent=HG003_chrY_T0001317;transcript_name=HG003_chrY_T0001317;gene_name=ENSG00000282909;ID=intron:HG003_chrY_T0001317:3;Name=ENSG00000282909;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18376830	18376946	.	+	.	source_transcript=ENST00000634531.1;source_transcript_name=ENST00000634531;source_gene=ENSG00000282909.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000282909.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000634531.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000634531.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000282909;transcript_id=HG003_chrY_T0001317;gene_id=HG003_chrY_G0000445;Parent=HG003_chrY_T0001317;transcript_name=HG003_chrY_T0001317;gene_name=ENSG00000282909;ID=exon:HG003_chrY_T0001317:4;Name=ENSG00000282909;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18376947	18377402	.	+	.	source_transcript=ENST00000634531.1;source_transcript_name=ENST00000634531;source_gene=ENSG00000282909.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000282909.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000634531.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000634531.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000282909;transcript_id=HG003_chrY_T0001317;gene_id=HG003_chrY_G0000445;Parent=HG003_chrY_T0001317;transcript_name=HG003_chrY_T0001317;gene_name=ENSG00000282909;ID=intron:HG003_chrY_T0001317:4;Name=ENSG00000282909;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18377403	18377529	.	+	.	source_transcript=ENST00000634531.1;source_transcript_name=ENST00000634531;source_gene=ENSG00000282909.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000282909.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000634531.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000634531.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000282909;transcript_id=HG003_chrY_T0001317;gene_id=HG003_chrY_G0000445;Parent=HG003_chrY_T0001317;transcript_name=HG003_chrY_T0001317;gene_name=ENSG00000282909;ID=exon:HG003_chrY_T0001317:5;Name=ENSG00000282909;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18377650	18379852	.	-	.	source_gene_common_name=TUBB1P2;source_gene=ENSG00000228578.1;gene_id=HG003_chrY_G0000446;gene_biotype=unprocessed_pseudogene;gene_name=TUBB1P2;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000446;Name=TUBB1P2
HG003_chrY	CAT	transcript	18377650	18379852	1000	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=transMap;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001319;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_G0000446;transcript_name=HG003_chrY_T0001319;gene_name=TUBB1P2;ID=HG003_chrY_T0001319;Name=TUBB1P2
HG003_chrY	CAT	exon	18377650	18378698	.	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=transMap;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001319;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_T0001319;transcript_name=HG003_chrY_T0001319;gene_name=TUBB1P2;ID=exon:HG003_chrY_T0001319:0;Name=TUBB1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18378699	18379210	.	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=transMap;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001319;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_T0001319;transcript_name=HG003_chrY_T0001319;gene_name=TUBB1P2;ID=intron:HG003_chrY_T0001319:0;Name=TUBB1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18379211	18379490	.	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=transMap;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001319;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_T0001319;transcript_name=HG003_chrY_T0001319;gene_name=TUBB1P2;ID=exon:HG003_chrY_T0001319:1;Name=TUBB1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18379491	18379795	.	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=transMap;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001319;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_T0001319;transcript_name=HG003_chrY_T0001319;gene_name=TUBB1P2;ID=intron:HG003_chrY_T0001319:1;Name=TUBB1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18379796	18379852	.	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=transMap;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001319;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_T0001319;transcript_name=HG003_chrY_T0001319;gene_name=TUBB1P2;ID=exon:HG003_chrY_T0001319:2;Name=TUBB1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18377650	18379852	1000	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001320;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_G0000446;transcript_name=HG003_chrY_T0001320;gene_name=TUBB1P2;ID=HG003_chrY_T0001320;Name=TUBB1P2
HG003_chrY	CAT	exon	18377650	18378698	.	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001320;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_T0001320;transcript_name=HG003_chrY_T0001320;gene_name=TUBB1P2;ID=exon:HG003_chrY_T0001320:0;Name=TUBB1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18378699	18379210	.	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001320;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_T0001320;transcript_name=HG003_chrY_T0001320;gene_name=TUBB1P2;ID=intron:HG003_chrY_T0001320:0;Name=TUBB1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18379211	18379301	.	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001320;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_T0001320;transcript_name=HG003_chrY_T0001320;gene_name=TUBB1P2;ID=exon:HG003_chrY_T0001320:1;Name=TUBB1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18379302	18379381	.	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001320;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_T0001320;transcript_name=HG003_chrY_T0001320;gene_name=TUBB1P2;ID=intron:HG003_chrY_T0001320:1;Name=TUBB1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18379382	18379490	.	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001320;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_T0001320;transcript_name=HG003_chrY_T0001320;gene_name=TUBB1P2;ID=exon:HG003_chrY_T0001320:2;Name=TUBB1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18379491	18379795	.	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001320;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_T0001320;transcript_name=HG003_chrY_T0001320;gene_name=TUBB1P2;ID=intron:HG003_chrY_T0001320:2;Name=TUBB1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18379796	18379852	.	-	.	source_transcript=ENST00000422712.1;source_transcript_name=TUBB1P2-201;source_gene=ENSG00000228578.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228578.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000422712.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422712.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P2;transcript_id=HG003_chrY_T0001320;gene_id=HG003_chrY_G0000446;Parent=HG003_chrY_T0001320;transcript_name=HG003_chrY_T0001320;gene_name=TUBB1P2;ID=exon:HG003_chrY_T0001320:3;Name=TUBB1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18412902	18440780	.	-	.	source_gene_common_name=FAM224B;source_gene=ENSG00000230663.2;alternative_source_transcripts=ENST00000729283.1;gene_id=HG003_chrY_G0000447;gene_biotype=lncRNA;gene_name=FAM224B;gene_sources=liftoff;ID=HG003_chrY_G0000447;Name=FAM224B
HG003_chrY	CAT	transcript	18412902	18440685	1000	-	.	source_transcript=ENST00000729283.1;source_transcript_name=FAM224B-202;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729283.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729283.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729283.1;transcript_id=HG003_chrY_T0001321;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001321;gene_name=FAM224B;ID=HG003_chrY_T0001321;Name=FAM224B
HG003_chrY	CAT	exon	18412902	18413212	.	-	.	source_transcript=ENST00000729283.1;source_transcript_name=FAM224B-202;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729283.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729283.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729283.1;transcript_id=HG003_chrY_T0001321;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001321;transcript_name=HG003_chrY_T0001321;gene_name=FAM224B;ID=exon:HG003_chrY_T0001321:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18413213	18437522	.	-	.	source_transcript=ENST00000729283.1;source_transcript_name=FAM224B-202;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729283.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729283.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729283.1;transcript_id=HG003_chrY_T0001321;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001321;transcript_name=HG003_chrY_T0001321;gene_name=FAM224B;ID=intron:HG003_chrY_T0001321:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729283.1;source_transcript_name=FAM224B-202;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729283.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729283.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729283.1;transcript_id=HG003_chrY_T0001321;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001321;transcript_name=HG003_chrY_T0001321;gene_name=FAM224B;ID=exon:HG003_chrY_T0001321:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729283.1;source_transcript_name=FAM224B-202;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729283.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729283.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729283.1;transcript_id=HG003_chrY_T0001321;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001321;transcript_name=HG003_chrY_T0001321;gene_name=FAM224B;ID=intron:HG003_chrY_T0001321:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440685	.	-	.	source_transcript=ENST00000729283.1;source_transcript_name=FAM224B-202;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729283.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729283.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729283.1;transcript_id=HG003_chrY_T0001321;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001321;transcript_name=HG003_chrY_T0001321;gene_name=FAM224B;ID=exon:HG003_chrY_T0001321:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18413617	18440574	1000	-	.	source_transcript=ENST00000458667.1;source_transcript_name=FAM224B-201;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458667.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458667.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000458667.1;transcript_id=HG003_chrY_T0001322;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001322;gene_name=FAM224B;ID=HG003_chrY_T0001322;Name=FAM224B
HG003_chrY	CAT	exon	18413617	18414771	.	-	.	source_transcript=ENST00000458667.1;source_transcript_name=FAM224B-201;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458667.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458667.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000458667.1;transcript_id=HG003_chrY_T0001322;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001322;transcript_name=HG003_chrY_T0001322;gene_name=FAM224B;ID=exon:HG003_chrY_T0001322:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000458667.1;source_transcript_name=FAM224B-201;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458667.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458667.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000458667.1;transcript_id=HG003_chrY_T0001322;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001322;transcript_name=HG003_chrY_T0001322;gene_name=FAM224B;ID=intron:HG003_chrY_T0001322:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000458667.1;source_transcript_name=FAM224B-201;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458667.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458667.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000458667.1;transcript_id=HG003_chrY_T0001322;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001322;transcript_name=HG003_chrY_T0001322;gene_name=FAM224B;ID=exon:HG003_chrY_T0001322:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18416592	.	-	.	source_transcript=ENST00000458667.1;source_transcript_name=FAM224B-201;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458667.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458667.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000458667.1;transcript_id=HG003_chrY_T0001322;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001322;transcript_name=HG003_chrY_T0001322;gene_name=FAM224B;ID=intron:HG003_chrY_T0001322:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18416593	18416827	.	-	.	source_transcript=ENST00000458667.1;source_transcript_name=FAM224B-201;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458667.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458667.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000458667.1;transcript_id=HG003_chrY_T0001322;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001322;transcript_name=HG003_chrY_T0001322;gene_name=FAM224B;ID=exon:HG003_chrY_T0001322:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18416828	18437522	.	-	.	source_transcript=ENST00000458667.1;source_transcript_name=FAM224B-201;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458667.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458667.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000458667.1;transcript_id=HG003_chrY_T0001322;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001322;transcript_name=HG003_chrY_T0001322;gene_name=FAM224B;ID=intron:HG003_chrY_T0001322:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000458667.1;source_transcript_name=FAM224B-201;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458667.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458667.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000458667.1;transcript_id=HG003_chrY_T0001322;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001322;transcript_name=HG003_chrY_T0001322;gene_name=FAM224B;ID=exon:HG003_chrY_T0001322:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000458667.1;source_transcript_name=FAM224B-201;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458667.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458667.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000458667.1;transcript_id=HG003_chrY_T0001322;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001322;transcript_name=HG003_chrY_T0001322;gene_name=FAM224B;ID=intron:HG003_chrY_T0001322:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440574	.	-	.	source_transcript=ENST00000458667.1;source_transcript_name=FAM224B-201;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458667.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458667.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000458667.1;transcript_id=HG003_chrY_T0001322;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001322;transcript_name=HG003_chrY_T0001322;gene_name=FAM224B;ID=exon:HG003_chrY_T0001322:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18413617	18440682	1000	-	.	source_transcript=ENST00000729284.1;source_transcript_name=FAM224B-203;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729284.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729284.1;transcript_id=HG003_chrY_T0001323;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001323;gene_name=FAM224B;ID=HG003_chrY_T0001323;Name=FAM224B
HG003_chrY	CAT	exon	18413617	18414771	.	-	.	source_transcript=ENST00000729284.1;source_transcript_name=FAM224B-203;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729284.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729284.1;transcript_id=HG003_chrY_T0001323;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001323;transcript_name=HG003_chrY_T0001323;gene_name=FAM224B;ID=exon:HG003_chrY_T0001323:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000729284.1;source_transcript_name=FAM224B-203;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729284.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729284.1;transcript_id=HG003_chrY_T0001323;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001323;transcript_name=HG003_chrY_T0001323;gene_name=FAM224B;ID=intron:HG003_chrY_T0001323:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000729284.1;source_transcript_name=FAM224B-203;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729284.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729284.1;transcript_id=HG003_chrY_T0001323;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001323;transcript_name=HG003_chrY_T0001323;gene_name=FAM224B;ID=exon:HG003_chrY_T0001323:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18437522	.	-	.	source_transcript=ENST00000729284.1;source_transcript_name=FAM224B-203;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729284.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729284.1;transcript_id=HG003_chrY_T0001323;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001323;transcript_name=HG003_chrY_T0001323;gene_name=FAM224B;ID=intron:HG003_chrY_T0001323:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729284.1;source_transcript_name=FAM224B-203;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729284.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729284.1;transcript_id=HG003_chrY_T0001323;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001323;transcript_name=HG003_chrY_T0001323;gene_name=FAM224B;ID=exon:HG003_chrY_T0001323:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729284.1;source_transcript_name=FAM224B-203;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729284.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729284.1;transcript_id=HG003_chrY_T0001323;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001323;transcript_name=HG003_chrY_T0001323;gene_name=FAM224B;ID=intron:HG003_chrY_T0001323:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440682	.	-	.	source_transcript=ENST00000729284.1;source_transcript_name=FAM224B-203;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729284.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729284.1;transcript_id=HG003_chrY_T0001323;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001323;transcript_name=HG003_chrY_T0001323;gene_name=FAM224B;ID=exon:HG003_chrY_T0001323:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18413620	18440658	1000	-	.	source_transcript=ENST00000729285.1;source_transcript_name=FAM224B-204;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729285.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729285.1;transcript_id=HG003_chrY_T0001324;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001324;gene_name=FAM224B;ID=HG003_chrY_T0001324;Name=FAM224B
HG003_chrY	CAT	exon	18413620	18414771	.	-	.	source_transcript=ENST00000729285.1;source_transcript_name=FAM224B-204;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729285.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729285.1;transcript_id=HG003_chrY_T0001324;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001324;transcript_name=HG003_chrY_T0001324;gene_name=FAM224B;ID=exon:HG003_chrY_T0001324:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000729285.1;source_transcript_name=FAM224B-204;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729285.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729285.1;transcript_id=HG003_chrY_T0001324;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001324;transcript_name=HG003_chrY_T0001324;gene_name=FAM224B;ID=intron:HG003_chrY_T0001324:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000729285.1;source_transcript_name=FAM224B-204;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729285.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729285.1;transcript_id=HG003_chrY_T0001324;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001324;transcript_name=HG003_chrY_T0001324;gene_name=FAM224B;ID=exon:HG003_chrY_T0001324:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18436057	.	-	.	source_transcript=ENST00000729285.1;source_transcript_name=FAM224B-204;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729285.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729285.1;transcript_id=HG003_chrY_T0001324;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001324;transcript_name=HG003_chrY_T0001324;gene_name=FAM224B;ID=intron:HG003_chrY_T0001324:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18436058	18436187	.	-	.	source_transcript=ENST00000729285.1;source_transcript_name=FAM224B-204;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729285.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729285.1;transcript_id=HG003_chrY_T0001324;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001324;transcript_name=HG003_chrY_T0001324;gene_name=FAM224B;ID=exon:HG003_chrY_T0001324:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729285.1;source_transcript_name=FAM224B-204;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729285.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729285.1;transcript_id=HG003_chrY_T0001324;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001324;transcript_name=HG003_chrY_T0001324;gene_name=FAM224B;ID=intron:HG003_chrY_T0001324:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729285.1;source_transcript_name=FAM224B-204;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729285.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729285.1;transcript_id=HG003_chrY_T0001324;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001324;transcript_name=HG003_chrY_T0001324;gene_name=FAM224B;ID=exon:HG003_chrY_T0001324:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729285.1;source_transcript_name=FAM224B-204;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729285.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729285.1;transcript_id=HG003_chrY_T0001324;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001324;transcript_name=HG003_chrY_T0001324;gene_name=FAM224B;ID=intron:HG003_chrY_T0001324:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440658	.	-	.	source_transcript=ENST00000729285.1;source_transcript_name=FAM224B-204;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729285.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729285.1;transcript_id=HG003_chrY_T0001324;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001324;transcript_name=HG003_chrY_T0001324;gene_name=FAM224B;ID=exon:HG003_chrY_T0001324:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18414099	18440653	1000	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=HG003_chrY_T0001325;Name=FAM224B
HG003_chrY	CAT	exon	18414099	18414771	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=exon:HG003_chrY_T0001325:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=intron:HG003_chrY_T0001325:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=exon:HG003_chrY_T0001325:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18432216	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=intron:HG003_chrY_T0001325:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18432217	18432273	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=exon:HG003_chrY_T0001325:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18432274	18432698	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=intron:HG003_chrY_T0001325:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18432699	18432772	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=exon:HG003_chrY_T0001325:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18432773	18433566	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=intron:HG003_chrY_T0001325:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18433567	18433722	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=exon:HG003_chrY_T0001325:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18433723	18436057	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=intron:HG003_chrY_T0001325:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18436058	18436187	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=exon:HG003_chrY_T0001325:5;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=intron:HG003_chrY_T0001325:5;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=exon:HG003_chrY_T0001325:6;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=intron:HG003_chrY_T0001325:6;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440369	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=exon:HG003_chrY_T0001325:7;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440370	18440485	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=intron:HG003_chrY_T0001325:7;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440653	.	-	.	source_transcript=ENST00000729288.1;source_transcript_name=FAM224B-207;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729288.1;transcript_id=HG003_chrY_T0001325;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001325;transcript_name=HG003_chrY_T0001325;gene_name=FAM224B;ID=exon:HG003_chrY_T0001325:8;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18414111	18440694	1000	-	.	source_transcript=ENST00000729286.1;source_transcript_name=FAM224B-205;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729286.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729286.1;transcript_id=HG003_chrY_T0001326;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001326;gene_name=FAM224B;ID=HG003_chrY_T0001326;Name=FAM224B
HG003_chrY	CAT	exon	18414111	18414771	.	-	.	source_transcript=ENST00000729286.1;source_transcript_name=FAM224B-205;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729286.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729286.1;transcript_id=HG003_chrY_T0001326;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001326;transcript_name=HG003_chrY_T0001326;gene_name=FAM224B;ID=exon:HG003_chrY_T0001326:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000729286.1;source_transcript_name=FAM224B-205;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729286.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729286.1;transcript_id=HG003_chrY_T0001326;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001326;transcript_name=HG003_chrY_T0001326;gene_name=FAM224B;ID=intron:HG003_chrY_T0001326:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000729286.1;source_transcript_name=FAM224B-205;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729286.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729286.1;transcript_id=HG003_chrY_T0001326;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001326;transcript_name=HG003_chrY_T0001326;gene_name=FAM224B;ID=exon:HG003_chrY_T0001326:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18437522	.	-	.	source_transcript=ENST00000729286.1;source_transcript_name=FAM224B-205;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729286.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729286.1;transcript_id=HG003_chrY_T0001326;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001326;transcript_name=HG003_chrY_T0001326;gene_name=FAM224B;ID=intron:HG003_chrY_T0001326:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729286.1;source_transcript_name=FAM224B-205;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729286.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729286.1;transcript_id=HG003_chrY_T0001326;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001326;transcript_name=HG003_chrY_T0001326;gene_name=FAM224B;ID=exon:HG003_chrY_T0001326:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729286.1;source_transcript_name=FAM224B-205;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729286.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729286.1;transcript_id=HG003_chrY_T0001326;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001326;transcript_name=HG003_chrY_T0001326;gene_name=FAM224B;ID=intron:HG003_chrY_T0001326:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440295	.	-	.	source_transcript=ENST00000729286.1;source_transcript_name=FAM224B-205;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729286.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729286.1;transcript_id=HG003_chrY_T0001326;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001326;transcript_name=HG003_chrY_T0001326;gene_name=FAM224B;ID=exon:HG003_chrY_T0001326:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440296	18440485	.	-	.	source_transcript=ENST00000729286.1;source_transcript_name=FAM224B-205;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729286.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729286.1;transcript_id=HG003_chrY_T0001326;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001326;transcript_name=HG003_chrY_T0001326;gene_name=FAM224B;ID=intron:HG003_chrY_T0001326:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440694	.	-	.	source_transcript=ENST00000729286.1;source_transcript_name=FAM224B-205;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729286.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729286.1;transcript_id=HG003_chrY_T0001326;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001326;transcript_name=HG003_chrY_T0001326;gene_name=FAM224B;ID=exon:HG003_chrY_T0001326:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18414111	18440631	1000	-	.	source_transcript=ENST00000729290.1;source_transcript_name=FAM224B-209;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729290.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729290.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729290.1;transcript_id=HG003_chrY_T0001327;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001327;gene_name=FAM224B;ID=HG003_chrY_T0001327;Name=FAM224B
HG003_chrY	CAT	exon	18414111	18414771	.	-	.	source_transcript=ENST00000729290.1;source_transcript_name=FAM224B-209;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729290.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729290.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729290.1;transcript_id=HG003_chrY_T0001327;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001327;transcript_name=HG003_chrY_T0001327;gene_name=FAM224B;ID=exon:HG003_chrY_T0001327:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000729290.1;source_transcript_name=FAM224B-209;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729290.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729290.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729290.1;transcript_id=HG003_chrY_T0001327;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001327;transcript_name=HG003_chrY_T0001327;gene_name=FAM224B;ID=intron:HG003_chrY_T0001327:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000729290.1;source_transcript_name=FAM224B-209;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729290.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729290.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729290.1;transcript_id=HG003_chrY_T0001327;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001327;transcript_name=HG003_chrY_T0001327;gene_name=FAM224B;ID=exon:HG003_chrY_T0001327:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18437522	.	-	.	source_transcript=ENST00000729290.1;source_transcript_name=FAM224B-209;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729290.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729290.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729290.1;transcript_id=HG003_chrY_T0001327;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001327;transcript_name=HG003_chrY_T0001327;gene_name=FAM224B;ID=intron:HG003_chrY_T0001327:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437612	.	-	.	source_transcript=ENST00000729290.1;source_transcript_name=FAM224B-209;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729290.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729290.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729290.1;transcript_id=HG003_chrY_T0001327;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001327;transcript_name=HG003_chrY_T0001327;gene_name=FAM224B;ID=exon:HG003_chrY_T0001327:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437613	18440135	.	-	.	source_transcript=ENST00000729290.1;source_transcript_name=FAM224B-209;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729290.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729290.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729290.1;transcript_id=HG003_chrY_T0001327;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001327;transcript_name=HG003_chrY_T0001327;gene_name=FAM224B;ID=intron:HG003_chrY_T0001327:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440631	.	-	.	source_transcript=ENST00000729290.1;source_transcript_name=FAM224B-209;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729290.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729290.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729290.1;transcript_id=HG003_chrY_T0001327;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001327;transcript_name=HG003_chrY_T0001327;gene_name=FAM224B;ID=exon:HG003_chrY_T0001327:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18414111	18440616	1000	-	.	source_transcript=ENST00000729291.1;source_transcript_name=FAM224B-210;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729291.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729291.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729291.1;transcript_id=HG003_chrY_T0001328;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001328;gene_name=FAM224B;ID=HG003_chrY_T0001328;Name=FAM224B
HG003_chrY	CAT	exon	18414111	18414170	.	-	.	source_transcript=ENST00000729291.1;source_transcript_name=FAM224B-210;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729291.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729291.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729291.1;transcript_id=HG003_chrY_T0001328;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001328;transcript_name=HG003_chrY_T0001328;gene_name=FAM224B;ID=exon:HG003_chrY_T0001328:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414171	18414644	.	-	.	source_transcript=ENST00000729291.1;source_transcript_name=FAM224B-210;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729291.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729291.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729291.1;transcript_id=HG003_chrY_T0001328;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001328;transcript_name=HG003_chrY_T0001328;gene_name=FAM224B;ID=intron:HG003_chrY_T0001328:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414645	18414771	.	-	.	source_transcript=ENST00000729291.1;source_transcript_name=FAM224B-210;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729291.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729291.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729291.1;transcript_id=HG003_chrY_T0001328;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001328;transcript_name=HG003_chrY_T0001328;gene_name=FAM224B;ID=exon:HG003_chrY_T0001328:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000729291.1;source_transcript_name=FAM224B-210;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729291.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729291.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729291.1;transcript_id=HG003_chrY_T0001328;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001328;transcript_name=HG003_chrY_T0001328;gene_name=FAM224B;ID=intron:HG003_chrY_T0001328:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000729291.1;source_transcript_name=FAM224B-210;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729291.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729291.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729291.1;transcript_id=HG003_chrY_T0001328;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001328;transcript_name=HG003_chrY_T0001328;gene_name=FAM224B;ID=exon:HG003_chrY_T0001328:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18437522	.	-	.	source_transcript=ENST00000729291.1;source_transcript_name=FAM224B-210;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729291.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729291.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729291.1;transcript_id=HG003_chrY_T0001328;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001328;transcript_name=HG003_chrY_T0001328;gene_name=FAM224B;ID=intron:HG003_chrY_T0001328:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729291.1;source_transcript_name=FAM224B-210;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729291.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729291.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729291.1;transcript_id=HG003_chrY_T0001328;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001328;transcript_name=HG003_chrY_T0001328;gene_name=FAM224B;ID=exon:HG003_chrY_T0001328:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729291.1;source_transcript_name=FAM224B-210;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729291.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729291.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729291.1;transcript_id=HG003_chrY_T0001328;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001328;transcript_name=HG003_chrY_T0001328;gene_name=FAM224B;ID=intron:HG003_chrY_T0001328:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440295	.	-	.	source_transcript=ENST00000729291.1;source_transcript_name=FAM224B-210;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729291.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729291.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729291.1;transcript_id=HG003_chrY_T0001328;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001328;transcript_name=HG003_chrY_T0001328;gene_name=FAM224B;ID=exon:HG003_chrY_T0001328:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440296	18440485	.	-	.	source_transcript=ENST00000729291.1;source_transcript_name=FAM224B-210;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729291.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729291.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729291.1;transcript_id=HG003_chrY_T0001328;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001328;transcript_name=HG003_chrY_T0001328;gene_name=FAM224B;ID=intron:HG003_chrY_T0001328:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440616	.	-	.	source_transcript=ENST00000729291.1;source_transcript_name=FAM224B-210;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729291.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729291.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729291.1;transcript_id=HG003_chrY_T0001328;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001328;transcript_name=HG003_chrY_T0001328;gene_name=FAM224B;ID=exon:HG003_chrY_T0001328:5;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18414113	18440655	1000	-	.	source_transcript=ENST00000729289.1;source_transcript_name=FAM224B-208;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729289.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729289.1;transcript_id=HG003_chrY_T0001329;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001329;gene_name=FAM224B;ID=HG003_chrY_T0001329;Name=FAM224B
HG003_chrY	CAT	exon	18414113	18414771	.	-	.	source_transcript=ENST00000729289.1;source_transcript_name=FAM224B-208;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729289.1;transcript_id=HG003_chrY_T0001329;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001329;transcript_name=HG003_chrY_T0001329;gene_name=FAM224B;ID=exon:HG003_chrY_T0001329:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000729289.1;source_transcript_name=FAM224B-208;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729289.1;transcript_id=HG003_chrY_T0001329;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001329;transcript_name=HG003_chrY_T0001329;gene_name=FAM224B;ID=intron:HG003_chrY_T0001329:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000729289.1;source_transcript_name=FAM224B-208;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729289.1;transcript_id=HG003_chrY_T0001329;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001329;transcript_name=HG003_chrY_T0001329;gene_name=FAM224B;ID=exon:HG003_chrY_T0001329:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18436057	.	-	.	source_transcript=ENST00000729289.1;source_transcript_name=FAM224B-208;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729289.1;transcript_id=HG003_chrY_T0001329;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001329;transcript_name=HG003_chrY_T0001329;gene_name=FAM224B;ID=intron:HG003_chrY_T0001329:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18436058	18436187	.	-	.	source_transcript=ENST00000729289.1;source_transcript_name=FAM224B-208;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729289.1;transcript_id=HG003_chrY_T0001329;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001329;transcript_name=HG003_chrY_T0001329;gene_name=FAM224B;ID=exon:HG003_chrY_T0001329:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729289.1;source_transcript_name=FAM224B-208;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729289.1;transcript_id=HG003_chrY_T0001329;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001329;transcript_name=HG003_chrY_T0001329;gene_name=FAM224B;ID=intron:HG003_chrY_T0001329:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729289.1;source_transcript_name=FAM224B-208;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729289.1;transcript_id=HG003_chrY_T0001329;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001329;transcript_name=HG003_chrY_T0001329;gene_name=FAM224B;ID=exon:HG003_chrY_T0001329:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729289.1;source_transcript_name=FAM224B-208;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729289.1;transcript_id=HG003_chrY_T0001329;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001329;transcript_name=HG003_chrY_T0001329;gene_name=FAM224B;ID=intron:HG003_chrY_T0001329:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440295	.	-	.	source_transcript=ENST00000729289.1;source_transcript_name=FAM224B-208;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729289.1;transcript_id=HG003_chrY_T0001329;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001329;transcript_name=HG003_chrY_T0001329;gene_name=FAM224B;ID=exon:HG003_chrY_T0001329:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440296	18440485	.	-	.	source_transcript=ENST00000729289.1;source_transcript_name=FAM224B-208;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729289.1;transcript_id=HG003_chrY_T0001329;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001329;transcript_name=HG003_chrY_T0001329;gene_name=FAM224B;ID=intron:HG003_chrY_T0001329:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440655	.	-	.	source_transcript=ENST00000729289.1;source_transcript_name=FAM224B-208;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729289.1;transcript_id=HG003_chrY_T0001329;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001329;transcript_name=HG003_chrY_T0001329;gene_name=FAM224B;ID=exon:HG003_chrY_T0001329:5;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18414116	18440674	1000	-	.	source_transcript=ENST00000729287.1;source_transcript_name=FAM224B-206;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729287.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729287.1;transcript_id=HG003_chrY_T0001330;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001330;gene_name=FAM224B;ID=HG003_chrY_T0001330;Name=FAM224B
HG003_chrY	CAT	exon	18414116	18414170	.	-	.	source_transcript=ENST00000729287.1;source_transcript_name=FAM224B-206;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729287.1;transcript_id=HG003_chrY_T0001330;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001330;transcript_name=HG003_chrY_T0001330;gene_name=FAM224B;ID=exon:HG003_chrY_T0001330:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414171	18414644	.	-	.	source_transcript=ENST00000729287.1;source_transcript_name=FAM224B-206;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729287.1;transcript_id=HG003_chrY_T0001330;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001330;transcript_name=HG003_chrY_T0001330;gene_name=FAM224B;ID=intron:HG003_chrY_T0001330:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414645	18414771	.	-	.	source_transcript=ENST00000729287.1;source_transcript_name=FAM224B-206;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729287.1;transcript_id=HG003_chrY_T0001330;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001330;transcript_name=HG003_chrY_T0001330;gene_name=FAM224B;ID=exon:HG003_chrY_T0001330:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000729287.1;source_transcript_name=FAM224B-206;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729287.1;transcript_id=HG003_chrY_T0001330;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001330;transcript_name=HG003_chrY_T0001330;gene_name=FAM224B;ID=intron:HG003_chrY_T0001330:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000729287.1;source_transcript_name=FAM224B-206;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729287.1;transcript_id=HG003_chrY_T0001330;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001330;transcript_name=HG003_chrY_T0001330;gene_name=FAM224B;ID=exon:HG003_chrY_T0001330:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18437522	.	-	.	source_transcript=ENST00000729287.1;source_transcript_name=FAM224B-206;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729287.1;transcript_id=HG003_chrY_T0001330;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001330;transcript_name=HG003_chrY_T0001330;gene_name=FAM224B;ID=intron:HG003_chrY_T0001330:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729287.1;source_transcript_name=FAM224B-206;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729287.1;transcript_id=HG003_chrY_T0001330;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001330;transcript_name=HG003_chrY_T0001330;gene_name=FAM224B;ID=exon:HG003_chrY_T0001330:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729287.1;source_transcript_name=FAM224B-206;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729287.1;transcript_id=HG003_chrY_T0001330;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001330;transcript_name=HG003_chrY_T0001330;gene_name=FAM224B;ID=intron:HG003_chrY_T0001330:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440674	.	-	.	source_transcript=ENST00000729287.1;source_transcript_name=FAM224B-206;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729287.1;transcript_id=HG003_chrY_T0001330;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001330;transcript_name=HG003_chrY_T0001330;gene_name=FAM224B;ID=exon:HG003_chrY_T0001330:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18414383	18440624	1000	-	.	source_transcript=ENST00000729294.1;source_transcript_name=FAM224B-213;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729294.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729294.1;transcript_id=HG003_chrY_T0001331;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001331;gene_name=FAM224B;ID=HG003_chrY_T0001331;Name=FAM224B
HG003_chrY	CAT	exon	18414383	18414771	.	-	.	source_transcript=ENST00000729294.1;source_transcript_name=FAM224B-213;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729294.1;transcript_id=HG003_chrY_T0001331;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001331;transcript_name=HG003_chrY_T0001331;gene_name=FAM224B;ID=exon:HG003_chrY_T0001331:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000729294.1;source_transcript_name=FAM224B-213;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729294.1;transcript_id=HG003_chrY_T0001331;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001331;transcript_name=HG003_chrY_T0001331;gene_name=FAM224B;ID=intron:HG003_chrY_T0001331:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000729294.1;source_transcript_name=FAM224B-213;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729294.1;transcript_id=HG003_chrY_T0001331;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001331;transcript_name=HG003_chrY_T0001331;gene_name=FAM224B;ID=exon:HG003_chrY_T0001331:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18436057	.	-	.	source_transcript=ENST00000729294.1;source_transcript_name=FAM224B-213;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729294.1;transcript_id=HG003_chrY_T0001331;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001331;transcript_name=HG003_chrY_T0001331;gene_name=FAM224B;ID=intron:HG003_chrY_T0001331:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18436058	18436187	.	-	.	source_transcript=ENST00000729294.1;source_transcript_name=FAM224B-213;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729294.1;transcript_id=HG003_chrY_T0001331;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001331;transcript_name=HG003_chrY_T0001331;gene_name=FAM224B;ID=exon:HG003_chrY_T0001331:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729294.1;source_transcript_name=FAM224B-213;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729294.1;transcript_id=HG003_chrY_T0001331;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001331;transcript_name=HG003_chrY_T0001331;gene_name=FAM224B;ID=intron:HG003_chrY_T0001331:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729294.1;source_transcript_name=FAM224B-213;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729294.1;transcript_id=HG003_chrY_T0001331;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001331;transcript_name=HG003_chrY_T0001331;gene_name=FAM224B;ID=exon:HG003_chrY_T0001331:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18438494	.	-	.	source_transcript=ENST00000729294.1;source_transcript_name=FAM224B-213;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729294.1;transcript_id=HG003_chrY_T0001331;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001331;transcript_name=HG003_chrY_T0001331;gene_name=FAM224B;ID=intron:HG003_chrY_T0001331:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18438495	18438592	.	-	.	source_transcript=ENST00000729294.1;source_transcript_name=FAM224B-213;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729294.1;transcript_id=HG003_chrY_T0001331;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001331;transcript_name=HG003_chrY_T0001331;gene_name=FAM224B;ID=exon:HG003_chrY_T0001331:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18438593	18440485	.	-	.	source_transcript=ENST00000729294.1;source_transcript_name=FAM224B-213;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729294.1;transcript_id=HG003_chrY_T0001331;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001331;transcript_name=HG003_chrY_T0001331;gene_name=FAM224B;ID=intron:HG003_chrY_T0001331:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440624	.	-	.	source_transcript=ENST00000729294.1;source_transcript_name=FAM224B-213;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729294.1;transcript_id=HG003_chrY_T0001331;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001331;transcript_name=HG003_chrY_T0001331;gene_name=FAM224B;ID=exon:HG003_chrY_T0001331:5;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18414385	18440630	1000	-	.	source_transcript=ENST00000729293.1;source_transcript_name=FAM224B-212;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729293.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729293.1;transcript_id=HG003_chrY_T0001332;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001332;gene_name=FAM224B;ID=HG003_chrY_T0001332;Name=FAM224B
HG003_chrY	CAT	exon	18414385	18414771	.	-	.	source_transcript=ENST00000729293.1;source_transcript_name=FAM224B-212;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729293.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729293.1;transcript_id=HG003_chrY_T0001332;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001332;transcript_name=HG003_chrY_T0001332;gene_name=FAM224B;ID=exon:HG003_chrY_T0001332:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000729293.1;source_transcript_name=FAM224B-212;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729293.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729293.1;transcript_id=HG003_chrY_T0001332;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001332;transcript_name=HG003_chrY_T0001332;gene_name=FAM224B;ID=intron:HG003_chrY_T0001332:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000729293.1;source_transcript_name=FAM224B-212;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729293.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729293.1;transcript_id=HG003_chrY_T0001332;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001332;transcript_name=HG003_chrY_T0001332;gene_name=FAM224B;ID=exon:HG003_chrY_T0001332:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18437522	.	-	.	source_transcript=ENST00000729293.1;source_transcript_name=FAM224B-212;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729293.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729293.1;transcript_id=HG003_chrY_T0001332;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001332;transcript_name=HG003_chrY_T0001332;gene_name=FAM224B;ID=intron:HG003_chrY_T0001332:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729293.1;source_transcript_name=FAM224B-212;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729293.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729293.1;transcript_id=HG003_chrY_T0001332;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001332;transcript_name=HG003_chrY_T0001332;gene_name=FAM224B;ID=exon:HG003_chrY_T0001332:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729293.1;source_transcript_name=FAM224B-212;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729293.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729293.1;transcript_id=HG003_chrY_T0001332;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001332;transcript_name=HG003_chrY_T0001332;gene_name=FAM224B;ID=intron:HG003_chrY_T0001332:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440369	.	-	.	source_transcript=ENST00000729293.1;source_transcript_name=FAM224B-212;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729293.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729293.1;transcript_id=HG003_chrY_T0001332;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001332;transcript_name=HG003_chrY_T0001332;gene_name=FAM224B;ID=exon:HG003_chrY_T0001332:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440370	18440485	.	-	.	source_transcript=ENST00000729293.1;source_transcript_name=FAM224B-212;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729293.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729293.1;transcript_id=HG003_chrY_T0001332;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001332;transcript_name=HG003_chrY_T0001332;gene_name=FAM224B;ID=intron:HG003_chrY_T0001332:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440630	.	-	.	source_transcript=ENST00000729293.1;source_transcript_name=FAM224B-212;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729293.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729293.1;transcript_id=HG003_chrY_T0001332;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001332;transcript_name=HG003_chrY_T0001332;gene_name=FAM224B;ID=exon:HG003_chrY_T0001332:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18414388	18440470	1000	-	.	source_transcript=ENST00000729295.1;source_transcript_name=FAM224B-214;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729295.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729295.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729295.1;transcript_id=HG003_chrY_T0001333;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001333;gene_name=FAM224B;ID=HG003_chrY_T0001333;Name=FAM224B
HG003_chrY	CAT	exon	18414388	18414771	.	-	.	source_transcript=ENST00000729295.1;source_transcript_name=FAM224B-214;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729295.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729295.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729295.1;transcript_id=HG003_chrY_T0001333;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001333;transcript_name=HG003_chrY_T0001333;gene_name=FAM224B;ID=exon:HG003_chrY_T0001333:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000729295.1;source_transcript_name=FAM224B-214;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729295.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729295.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729295.1;transcript_id=HG003_chrY_T0001333;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001333;transcript_name=HG003_chrY_T0001333;gene_name=FAM224B;ID=intron:HG003_chrY_T0001333:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000729295.1;source_transcript_name=FAM224B-214;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729295.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729295.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729295.1;transcript_id=HG003_chrY_T0001333;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001333;transcript_name=HG003_chrY_T0001333;gene_name=FAM224B;ID=exon:HG003_chrY_T0001333:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18432216	.	-	.	source_transcript=ENST00000729295.1;source_transcript_name=FAM224B-214;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729295.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729295.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729295.1;transcript_id=HG003_chrY_T0001333;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001333;transcript_name=HG003_chrY_T0001333;gene_name=FAM224B;ID=intron:HG003_chrY_T0001333:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18432217	18432273	.	-	.	source_transcript=ENST00000729295.1;source_transcript_name=FAM224B-214;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729295.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729295.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729295.1;transcript_id=HG003_chrY_T0001333;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001333;transcript_name=HG003_chrY_T0001333;gene_name=FAM224B;ID=exon:HG003_chrY_T0001333:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18432274	18437522	.	-	.	source_transcript=ENST00000729295.1;source_transcript_name=FAM224B-214;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729295.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729295.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729295.1;transcript_id=HG003_chrY_T0001333;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001333;transcript_name=HG003_chrY_T0001333;gene_name=FAM224B;ID=intron:HG003_chrY_T0001333:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729295.1;source_transcript_name=FAM224B-214;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729295.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729295.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729295.1;transcript_id=HG003_chrY_T0001333;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001333;transcript_name=HG003_chrY_T0001333;gene_name=FAM224B;ID=exon:HG003_chrY_T0001333:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729295.1;source_transcript_name=FAM224B-214;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729295.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729295.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729295.1;transcript_id=HG003_chrY_T0001333;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001333;transcript_name=HG003_chrY_T0001333;gene_name=FAM224B;ID=intron:HG003_chrY_T0001333:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440470	.	-	.	source_transcript=ENST00000729295.1;source_transcript_name=FAM224B-214;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729295.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729295.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729295.1;transcript_id=HG003_chrY_T0001333;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001333;transcript_name=HG003_chrY_T0001333;gene_name=FAM224B;ID=exon:HG003_chrY_T0001333:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18414399	18440674	1000	-	.	source_transcript=ENST00000729292.1;source_transcript_name=FAM224B-211;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729292.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729292.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729292.1;transcript_id=HG003_chrY_T0001334;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001334;gene_name=FAM224B;ID=HG003_chrY_T0001334;Name=FAM224B
HG003_chrY	CAT	exon	18414399	18414771	.	-	.	source_transcript=ENST00000729292.1;source_transcript_name=FAM224B-211;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729292.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729292.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729292.1;transcript_id=HG003_chrY_T0001334;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001334;transcript_name=HG003_chrY_T0001334;gene_name=FAM224B;ID=exon:HG003_chrY_T0001334:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414772	18414858	.	-	.	source_transcript=ENST00000729292.1;source_transcript_name=FAM224B-211;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729292.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729292.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729292.1;transcript_id=HG003_chrY_T0001334;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001334;transcript_name=HG003_chrY_T0001334;gene_name=FAM224B;ID=intron:HG003_chrY_T0001334:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18414859	18414943	.	-	.	source_transcript=ENST00000729292.1;source_transcript_name=FAM224B-211;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729292.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729292.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729292.1;transcript_id=HG003_chrY_T0001334;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001334;transcript_name=HG003_chrY_T0001334;gene_name=FAM224B;ID=exon:HG003_chrY_T0001334:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18414944	18440485	.	-	.	source_transcript=ENST00000729292.1;source_transcript_name=FAM224B-211;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729292.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729292.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729292.1;transcript_id=HG003_chrY_T0001334;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001334;transcript_name=HG003_chrY_T0001334;gene_name=FAM224B;ID=intron:HG003_chrY_T0001334:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440674	.	-	.	source_transcript=ENST00000729292.1;source_transcript_name=FAM224B-211;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729292.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729292.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729292.1;transcript_id=HG003_chrY_T0001334;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001334;transcript_name=HG003_chrY_T0001334;gene_name=FAM224B;ID=exon:HG003_chrY_T0001334:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18435163	18440685	1000	-	.	source_transcript=ENST00000729296.1;source_transcript_name=FAM224B-215;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729296.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729296.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729296.1;transcript_id=HG003_chrY_T0001338;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001338;gene_name=FAM224B;ID=HG003_chrY_T0001338;Name=FAM224B
HG003_chrY	CAT	exon	18435163	18436187	.	-	.	source_transcript=ENST00000729296.1;source_transcript_name=FAM224B-215;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729296.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729296.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729296.1;transcript_id=HG003_chrY_T0001338;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001338;transcript_name=HG003_chrY_T0001338;gene_name=FAM224B;ID=exon:HG003_chrY_T0001338:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729296.1;source_transcript_name=FAM224B-215;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729296.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729296.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729296.1;transcript_id=HG003_chrY_T0001338;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001338;transcript_name=HG003_chrY_T0001338;gene_name=FAM224B;ID=intron:HG003_chrY_T0001338:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729296.1;source_transcript_name=FAM224B-215;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729296.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729296.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729296.1;transcript_id=HG003_chrY_T0001338;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001338;transcript_name=HG003_chrY_T0001338;gene_name=FAM224B;ID=exon:HG003_chrY_T0001338:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729296.1;source_transcript_name=FAM224B-215;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729296.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729296.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729296.1;transcript_id=HG003_chrY_T0001338;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001338;transcript_name=HG003_chrY_T0001338;gene_name=FAM224B;ID=intron:HG003_chrY_T0001338:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440685	.	-	.	source_transcript=ENST00000729296.1;source_transcript_name=FAM224B-215;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729296.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729296.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729296.1;transcript_id=HG003_chrY_T0001338;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001338;transcript_name=HG003_chrY_T0001338;gene_name=FAM224B;ID=exon:HG003_chrY_T0001338:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18435947	18440780	1000	-	.	source_transcript=ENST00000729297.1;source_transcript_name=FAM224B-216;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729297.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729297.1;transcript_id=HG003_chrY_T0001339;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001339;gene_name=FAM224B;ID=HG003_chrY_T0001339;Name=FAM224B
HG003_chrY	CAT	exon	18435947	18436187	.	-	.	source_transcript=ENST00000729297.1;source_transcript_name=FAM224B-216;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729297.1;transcript_id=HG003_chrY_T0001339;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001339;transcript_name=HG003_chrY_T0001339;gene_name=FAM224B;ID=exon:HG003_chrY_T0001339:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729297.1;source_transcript_name=FAM224B-216;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729297.1;transcript_id=HG003_chrY_T0001339;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001339;transcript_name=HG003_chrY_T0001339;gene_name=FAM224B;ID=intron:HG003_chrY_T0001339:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729297.1;source_transcript_name=FAM224B-216;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729297.1;transcript_id=HG003_chrY_T0001339;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001339;transcript_name=HG003_chrY_T0001339;gene_name=FAM224B;ID=exon:HG003_chrY_T0001339:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729297.1;source_transcript_name=FAM224B-216;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729297.1;transcript_id=HG003_chrY_T0001339;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001339;transcript_name=HG003_chrY_T0001339;gene_name=FAM224B;ID=intron:HG003_chrY_T0001339:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440295	.	-	.	source_transcript=ENST00000729297.1;source_transcript_name=FAM224B-216;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729297.1;transcript_id=HG003_chrY_T0001339;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001339;transcript_name=HG003_chrY_T0001339;gene_name=FAM224B;ID=exon:HG003_chrY_T0001339:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440296	18440485	.	-	.	source_transcript=ENST00000729297.1;source_transcript_name=FAM224B-216;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729297.1;transcript_id=HG003_chrY_T0001339;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001339;transcript_name=HG003_chrY_T0001339;gene_name=FAM224B;ID=intron:HG003_chrY_T0001339:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440780	.	-	.	source_transcript=ENST00000729297.1;source_transcript_name=FAM224B-216;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729297.1;transcript_id=HG003_chrY_T0001339;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001339;transcript_name=HG003_chrY_T0001339;gene_name=FAM224B;ID=exon:HG003_chrY_T0001339:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18435963	18440692	1000	-	.	source_transcript=ENST00000729298.1;source_transcript_name=FAM224B-217;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729298.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729298.1;transcript_id=HG003_chrY_T0001340;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001340;gene_name=FAM224B;ID=HG003_chrY_T0001340;Name=FAM224B
HG003_chrY	CAT	exon	18435963	18436187	.	-	.	source_transcript=ENST00000729298.1;source_transcript_name=FAM224B-217;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729298.1;transcript_id=HG003_chrY_T0001340;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001340;transcript_name=HG003_chrY_T0001340;gene_name=FAM224B;ID=exon:HG003_chrY_T0001340:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729298.1;source_transcript_name=FAM224B-217;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729298.1;transcript_id=HG003_chrY_T0001340;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001340;transcript_name=HG003_chrY_T0001340;gene_name=FAM224B;ID=intron:HG003_chrY_T0001340:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729298.1;source_transcript_name=FAM224B-217;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729298.1;transcript_id=HG003_chrY_T0001340;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001340;transcript_name=HG003_chrY_T0001340;gene_name=FAM224B;ID=exon:HG003_chrY_T0001340:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729298.1;source_transcript_name=FAM224B-217;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729298.1;transcript_id=HG003_chrY_T0001340;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001340;transcript_name=HG003_chrY_T0001340;gene_name=FAM224B;ID=intron:HG003_chrY_T0001340:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440369	.	-	.	source_transcript=ENST00000729298.1;source_transcript_name=FAM224B-217;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729298.1;transcript_id=HG003_chrY_T0001340;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001340;transcript_name=HG003_chrY_T0001340;gene_name=FAM224B;ID=exon:HG003_chrY_T0001340:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440370	18440485	.	-	.	source_transcript=ENST00000729298.1;source_transcript_name=FAM224B-217;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729298.1;transcript_id=HG003_chrY_T0001340;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001340;transcript_name=HG003_chrY_T0001340;gene_name=FAM224B;ID=intron:HG003_chrY_T0001340:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440692	.	-	.	source_transcript=ENST00000729298.1;source_transcript_name=FAM224B-217;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729298.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729298.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729298.1;transcript_id=HG003_chrY_T0001340;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001340;transcript_name=HG003_chrY_T0001340;gene_name=FAM224B;ID=exon:HG003_chrY_T0001340:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18435963	18440674	1000	-	.	source_transcript=ENST00000729300.1;source_transcript_name=FAM224B-219;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729300.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729300.1;transcript_id=HG003_chrY_T0001341;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001341;gene_name=FAM224B;ID=HG003_chrY_T0001341;Name=FAM224B
HG003_chrY	CAT	exon	18435963	18436187	.	-	.	source_transcript=ENST00000729300.1;source_transcript_name=FAM224B-219;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729300.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729300.1;transcript_id=HG003_chrY_T0001341;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001341;transcript_name=HG003_chrY_T0001341;gene_name=FAM224B;ID=exon:HG003_chrY_T0001341:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729300.1;source_transcript_name=FAM224B-219;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729300.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729300.1;transcript_id=HG003_chrY_T0001341;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001341;transcript_name=HG003_chrY_T0001341;gene_name=FAM224B;ID=intron:HG003_chrY_T0001341:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437612	.	-	.	source_transcript=ENST00000729300.1;source_transcript_name=FAM224B-219;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729300.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729300.1;transcript_id=HG003_chrY_T0001341;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001341;transcript_name=HG003_chrY_T0001341;gene_name=FAM224B;ID=exon:HG003_chrY_T0001341:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437613	18440135	.	-	.	source_transcript=ENST00000729300.1;source_transcript_name=FAM224B-219;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729300.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729300.1;transcript_id=HG003_chrY_T0001341;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001341;transcript_name=HG003_chrY_T0001341;gene_name=FAM224B;ID=intron:HG003_chrY_T0001341:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440295	.	-	.	source_transcript=ENST00000729300.1;source_transcript_name=FAM224B-219;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729300.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729300.1;transcript_id=HG003_chrY_T0001341;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001341;transcript_name=HG003_chrY_T0001341;gene_name=FAM224B;ID=exon:HG003_chrY_T0001341:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440296	18440485	.	-	.	source_transcript=ENST00000729300.1;source_transcript_name=FAM224B-219;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729300.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729300.1;transcript_id=HG003_chrY_T0001341;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001341;transcript_name=HG003_chrY_T0001341;gene_name=FAM224B;ID=intron:HG003_chrY_T0001341:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440674	.	-	.	source_transcript=ENST00000729300.1;source_transcript_name=FAM224B-219;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729300.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729300.1;transcript_id=HG003_chrY_T0001341;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001341;transcript_name=HG003_chrY_T0001341;gene_name=FAM224B;ID=exon:HG003_chrY_T0001341:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18435977	18440689	1000	-	.	source_transcript=ENST00000729299.1;source_transcript_name=FAM224B-218;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729299.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729299.1;transcript_id=HG003_chrY_T0001342;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001342;gene_name=FAM224B;ID=HG003_chrY_T0001342;Name=FAM224B
HG003_chrY	CAT	exon	18435977	18436187	.	-	.	source_transcript=ENST00000729299.1;source_transcript_name=FAM224B-218;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729299.1;transcript_id=HG003_chrY_T0001342;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001342;transcript_name=HG003_chrY_T0001342;gene_name=FAM224B;ID=exon:HG003_chrY_T0001342:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729299.1;source_transcript_name=FAM224B-218;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729299.1;transcript_id=HG003_chrY_T0001342;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001342;transcript_name=HG003_chrY_T0001342;gene_name=FAM224B;ID=intron:HG003_chrY_T0001342:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729299.1;source_transcript_name=FAM224B-218;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729299.1;transcript_id=HG003_chrY_T0001342;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001342;transcript_name=HG003_chrY_T0001342;gene_name=FAM224B;ID=exon:HG003_chrY_T0001342:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440485	.	-	.	source_transcript=ENST00000729299.1;source_transcript_name=FAM224B-218;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729299.1;transcript_id=HG003_chrY_T0001342;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001342;transcript_name=HG003_chrY_T0001342;gene_name=FAM224B;ID=intron:HG003_chrY_T0001342:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440689	.	-	.	source_transcript=ENST00000729299.1;source_transcript_name=FAM224B-218;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729299.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729299.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729299.1;transcript_id=HG003_chrY_T0001342;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001342;transcript_name=HG003_chrY_T0001342;gene_name=FAM224B;ID=exon:HG003_chrY_T0001342:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18435981	18440646	1000	-	.	source_transcript=ENST00000729305.1;source_transcript_name=FAM224B-224;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729305.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729305.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729305.1;transcript_id=HG003_chrY_T0001343;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001343;gene_name=FAM224B;ID=HG003_chrY_T0001343;Name=FAM224B
HG003_chrY	CAT	exon	18435981	18436187	.	-	.	source_transcript=ENST00000729305.1;source_transcript_name=FAM224B-224;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729305.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729305.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729305.1;transcript_id=HG003_chrY_T0001343;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001343;transcript_name=HG003_chrY_T0001343;gene_name=FAM224B;ID=exon:HG003_chrY_T0001343:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729305.1;source_transcript_name=FAM224B-224;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729305.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729305.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729305.1;transcript_id=HG003_chrY_T0001343;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001343;transcript_name=HG003_chrY_T0001343;gene_name=FAM224B;ID=intron:HG003_chrY_T0001343:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437612	.	-	.	source_transcript=ENST00000729305.1;source_transcript_name=FAM224B-224;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729305.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729305.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729305.1;transcript_id=HG003_chrY_T0001343;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001343;transcript_name=HG003_chrY_T0001343;gene_name=FAM224B;ID=exon:HG003_chrY_T0001343:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437613	18440135	.	-	.	source_transcript=ENST00000729305.1;source_transcript_name=FAM224B-224;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729305.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729305.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729305.1;transcript_id=HG003_chrY_T0001343;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001343;transcript_name=HG003_chrY_T0001343;gene_name=FAM224B;ID=intron:HG003_chrY_T0001343:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440646	.	-	.	source_transcript=ENST00000729305.1;source_transcript_name=FAM224B-224;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729305.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729305.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729305.1;transcript_id=HG003_chrY_T0001343;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001343;transcript_name=HG003_chrY_T0001343;gene_name=FAM224B;ID=exon:HG003_chrY_T0001343:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18435981	18440631	1000	-	.	source_transcript=ENST00000729306.1;source_transcript_name=FAM224B-225;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729306.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729306.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729306.1;transcript_id=HG003_chrY_T0001344;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001344;gene_name=FAM224B;ID=HG003_chrY_T0001344;Name=FAM224B
HG003_chrY	CAT	exon	18435981	18436187	.	-	.	source_transcript=ENST00000729306.1;source_transcript_name=FAM224B-225;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729306.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729306.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729306.1;transcript_id=HG003_chrY_T0001344;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001344;transcript_name=HG003_chrY_T0001344;gene_name=FAM224B;ID=exon:HG003_chrY_T0001344:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729306.1;source_transcript_name=FAM224B-225;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729306.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729306.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729306.1;transcript_id=HG003_chrY_T0001344;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001344;transcript_name=HG003_chrY_T0001344;gene_name=FAM224B;ID=intron:HG003_chrY_T0001344:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18438592	.	-	.	source_transcript=ENST00000729306.1;source_transcript_name=FAM224B-225;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729306.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729306.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729306.1;transcript_id=HG003_chrY_T0001344;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001344;transcript_name=HG003_chrY_T0001344;gene_name=FAM224B;ID=exon:HG003_chrY_T0001344:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18438593	18440135	.	-	.	source_transcript=ENST00000729306.1;source_transcript_name=FAM224B-225;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729306.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729306.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729306.1;transcript_id=HG003_chrY_T0001344;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001344;transcript_name=HG003_chrY_T0001344;gene_name=FAM224B;ID=intron:HG003_chrY_T0001344:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440631	.	-	.	source_transcript=ENST00000729306.1;source_transcript_name=FAM224B-225;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729306.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729306.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729306.1;transcript_id=HG003_chrY_T0001344;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001344;transcript_name=HG003_chrY_T0001344;gene_name=FAM224B;ID=exon:HG003_chrY_T0001344:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18435985	18440663	1000	-	.	source_transcript=ENST00000729302.1;source_transcript_name=FAM224B-221;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729302.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729302.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729302.1;transcript_id=HG003_chrY_T0001345;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001345;gene_name=FAM224B;ID=HG003_chrY_T0001345;Name=FAM224B
HG003_chrY	CAT	exon	18435985	18436187	.	-	.	source_transcript=ENST00000729302.1;source_transcript_name=FAM224B-221;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729302.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729302.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729302.1;transcript_id=HG003_chrY_T0001345;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001345;transcript_name=HG003_chrY_T0001345;gene_name=FAM224B;ID=exon:HG003_chrY_T0001345:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729302.1;source_transcript_name=FAM224B-221;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729302.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729302.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729302.1;transcript_id=HG003_chrY_T0001345;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001345;transcript_name=HG003_chrY_T0001345;gene_name=FAM224B;ID=intron:HG003_chrY_T0001345:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729302.1;source_transcript_name=FAM224B-221;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729302.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729302.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729302.1;transcript_id=HG003_chrY_T0001345;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001345;transcript_name=HG003_chrY_T0001345;gene_name=FAM224B;ID=exon:HG003_chrY_T0001345:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18438494	.	-	.	source_transcript=ENST00000729302.1;source_transcript_name=FAM224B-221;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729302.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729302.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729302.1;transcript_id=HG003_chrY_T0001345;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001345;transcript_name=HG003_chrY_T0001345;gene_name=FAM224B;ID=intron:HG003_chrY_T0001345:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18438495	18438592	.	-	.	source_transcript=ENST00000729302.1;source_transcript_name=FAM224B-221;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729302.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729302.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729302.1;transcript_id=HG003_chrY_T0001345;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001345;transcript_name=HG003_chrY_T0001345;gene_name=FAM224B;ID=exon:HG003_chrY_T0001345:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18438593	18440485	.	-	.	source_transcript=ENST00000729302.1;source_transcript_name=FAM224B-221;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729302.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729302.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729302.1;transcript_id=HG003_chrY_T0001345;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001345;transcript_name=HG003_chrY_T0001345;gene_name=FAM224B;ID=intron:HG003_chrY_T0001345:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440663	.	-	.	source_transcript=ENST00000729302.1;source_transcript_name=FAM224B-221;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729302.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729302.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729302.1;transcript_id=HG003_chrY_T0001345;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001345;transcript_name=HG003_chrY_T0001345;gene_name=FAM224B;ID=exon:HG003_chrY_T0001345:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18435996	18440672	1000	-	.	source_transcript=ENST00000729303.1;source_transcript_name=FAM224B-222;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729303.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729303.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729303.1;transcript_id=HG003_chrY_T0001346;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001346;gene_name=FAM224B;ID=HG003_chrY_T0001346;Name=FAM224B
HG003_chrY	CAT	exon	18435996	18436187	.	-	.	source_transcript=ENST00000729303.1;source_transcript_name=FAM224B-222;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729303.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729303.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729303.1;transcript_id=HG003_chrY_T0001346;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001346;transcript_name=HG003_chrY_T0001346;gene_name=FAM224B;ID=exon:HG003_chrY_T0001346:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729303.1;source_transcript_name=FAM224B-222;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729303.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729303.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729303.1;transcript_id=HG003_chrY_T0001346;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001346;transcript_name=HG003_chrY_T0001346;gene_name=FAM224B;ID=intron:HG003_chrY_T0001346:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729303.1;source_transcript_name=FAM224B-222;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729303.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729303.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729303.1;transcript_id=HG003_chrY_T0001346;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001346;transcript_name=HG003_chrY_T0001346;gene_name=FAM224B;ID=exon:HG003_chrY_T0001346:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729303.1;source_transcript_name=FAM224B-222;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729303.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729303.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729303.1;transcript_id=HG003_chrY_T0001346;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001346;transcript_name=HG003_chrY_T0001346;gene_name=FAM224B;ID=intron:HG003_chrY_T0001346:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440271	.	-	.	source_transcript=ENST00000729303.1;source_transcript_name=FAM224B-222;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729303.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729303.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729303.1;transcript_id=HG003_chrY_T0001346;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001346;transcript_name=HG003_chrY_T0001346;gene_name=FAM224B;ID=exon:HG003_chrY_T0001346:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440272	18440485	.	-	.	source_transcript=ENST00000729303.1;source_transcript_name=FAM224B-222;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729303.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729303.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729303.1;transcript_id=HG003_chrY_T0001346;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001346;transcript_name=HG003_chrY_T0001346;gene_name=FAM224B;ID=intron:HG003_chrY_T0001346:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440672	.	-	.	source_transcript=ENST00000729303.1;source_transcript_name=FAM224B-222;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729303.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729303.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729303.1;transcript_id=HG003_chrY_T0001346;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001346;transcript_name=HG003_chrY_T0001346;gene_name=FAM224B;ID=exon:HG003_chrY_T0001346:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18436000	18440683	1000	-	.	source_transcript=ENST00000729301.1;source_transcript_name=FAM224B-220;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729301.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729301.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729301.1;transcript_id=HG003_chrY_T0001347;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001347;gene_name=FAM224B;ID=HG003_chrY_T0001347;Name=FAM224B
HG003_chrY	CAT	exon	18436000	18436187	.	-	.	source_transcript=ENST00000729301.1;source_transcript_name=FAM224B-220;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729301.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729301.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729301.1;transcript_id=HG003_chrY_T0001347;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001347;transcript_name=HG003_chrY_T0001347;gene_name=FAM224B;ID=exon:HG003_chrY_T0001347:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729301.1;source_transcript_name=FAM224B-220;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729301.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729301.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729301.1;transcript_id=HG003_chrY_T0001347;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001347;transcript_name=HG003_chrY_T0001347;gene_name=FAM224B;ID=intron:HG003_chrY_T0001347:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729301.1;source_transcript_name=FAM224B-220;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729301.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729301.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729301.1;transcript_id=HG003_chrY_T0001347;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001347;transcript_name=HG003_chrY_T0001347;gene_name=FAM224B;ID=exon:HG003_chrY_T0001347:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18438494	.	-	.	source_transcript=ENST00000729301.1;source_transcript_name=FAM224B-220;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729301.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729301.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729301.1;transcript_id=HG003_chrY_T0001347;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001347;transcript_name=HG003_chrY_T0001347;gene_name=FAM224B;ID=intron:HG003_chrY_T0001347:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18438495	18438592	.	-	.	source_transcript=ENST00000729301.1;source_transcript_name=FAM224B-220;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729301.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729301.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729301.1;transcript_id=HG003_chrY_T0001347;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001347;transcript_name=HG003_chrY_T0001347;gene_name=FAM224B;ID=exon:HG003_chrY_T0001347:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18438593	18440135	.	-	.	source_transcript=ENST00000729301.1;source_transcript_name=FAM224B-220;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729301.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729301.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729301.1;transcript_id=HG003_chrY_T0001347;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001347;transcript_name=HG003_chrY_T0001347;gene_name=FAM224B;ID=intron:HG003_chrY_T0001347:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440295	.	-	.	source_transcript=ENST00000729301.1;source_transcript_name=FAM224B-220;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729301.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729301.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729301.1;transcript_id=HG003_chrY_T0001347;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001347;transcript_name=HG003_chrY_T0001347;gene_name=FAM224B;ID=exon:HG003_chrY_T0001347:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440296	18440485	.	-	.	source_transcript=ENST00000729301.1;source_transcript_name=FAM224B-220;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729301.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729301.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729301.1;transcript_id=HG003_chrY_T0001347;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001347;transcript_name=HG003_chrY_T0001347;gene_name=FAM224B;ID=intron:HG003_chrY_T0001347:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440683	.	-	.	source_transcript=ENST00000729301.1;source_transcript_name=FAM224B-220;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729301.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729301.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729301.1;transcript_id=HG003_chrY_T0001347;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001347;transcript_name=HG003_chrY_T0001347;gene_name=FAM224B;ID=exon:HG003_chrY_T0001347:4;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18436000	18440624	1000	-	.	source_transcript=ENST00000729308.1;source_transcript_name=FAM224B-227;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729308.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729308.1;transcript_id=HG003_chrY_T0001348;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001348;gene_name=FAM224B;ID=HG003_chrY_T0001348;Name=FAM224B
HG003_chrY	CAT	exon	18436000	18436187	.	-	.	source_transcript=ENST00000729308.1;source_transcript_name=FAM224B-227;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729308.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729308.1;transcript_id=HG003_chrY_T0001348;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001348;transcript_name=HG003_chrY_T0001348;gene_name=FAM224B;ID=exon:HG003_chrY_T0001348:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729308.1;source_transcript_name=FAM224B-227;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729308.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729308.1;transcript_id=HG003_chrY_T0001348;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001348;transcript_name=HG003_chrY_T0001348;gene_name=FAM224B;ID=intron:HG003_chrY_T0001348:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729308.1;source_transcript_name=FAM224B-227;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729308.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729308.1;transcript_id=HG003_chrY_T0001348;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001348;transcript_name=HG003_chrY_T0001348;gene_name=FAM224B;ID=exon:HG003_chrY_T0001348:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18440135	.	-	.	source_transcript=ENST00000729308.1;source_transcript_name=FAM224B-227;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729308.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729308.1;transcript_id=HG003_chrY_T0001348;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001348;transcript_name=HG003_chrY_T0001348;gene_name=FAM224B;ID=intron:HG003_chrY_T0001348:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440257	.	-	.	source_transcript=ENST00000729308.1;source_transcript_name=FAM224B-227;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729308.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729308.1;transcript_id=HG003_chrY_T0001348;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001348;transcript_name=HG003_chrY_T0001348;gene_name=FAM224B;ID=exon:HG003_chrY_T0001348:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440258	18440485	.	-	.	source_transcript=ENST00000729308.1;source_transcript_name=FAM224B-227;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729308.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729308.1;transcript_id=HG003_chrY_T0001348;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001348;transcript_name=HG003_chrY_T0001348;gene_name=FAM224B;ID=intron:HG003_chrY_T0001348:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440624	.	-	.	source_transcript=ENST00000729308.1;source_transcript_name=FAM224B-227;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729308.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729308.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729308.1;transcript_id=HG003_chrY_T0001348;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001348;transcript_name=HG003_chrY_T0001348;gene_name=FAM224B;ID=exon:HG003_chrY_T0001348:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18436002	18440588	1000	-	.	source_transcript=ENST00000729311.1;source_transcript_name=FAM224B-230;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729311.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729311.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729311.1;transcript_id=HG003_chrY_T0001349;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001349;gene_name=FAM224B;ID=HG003_chrY_T0001349;Name=FAM224B
HG003_chrY	CAT	exon	18436002	18436187	.	-	.	source_transcript=ENST00000729311.1;source_transcript_name=FAM224B-230;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729311.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729311.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729311.1;transcript_id=HG003_chrY_T0001349;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001349;transcript_name=HG003_chrY_T0001349;gene_name=FAM224B;ID=exon:HG003_chrY_T0001349:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18440135	.	-	.	source_transcript=ENST00000729311.1;source_transcript_name=FAM224B-230;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729311.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729311.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729311.1;transcript_id=HG003_chrY_T0001349;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001349;transcript_name=HG003_chrY_T0001349;gene_name=FAM224B;ID=intron:HG003_chrY_T0001349:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440588	.	-	.	source_transcript=ENST00000729311.1;source_transcript_name=FAM224B-230;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729311.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729311.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729311.1;transcript_id=HG003_chrY_T0001349;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001349;transcript_name=HG003_chrY_T0001349;gene_name=FAM224B;ID=exon:HG003_chrY_T0001349:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18436004	18440678	1000	-	.	source_transcript=ENST00000729304.1;source_transcript_name=FAM224B-223;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729304.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729304.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729304.1;transcript_id=HG003_chrY_T0001350;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001350;gene_name=FAM224B;ID=HG003_chrY_T0001350;Name=FAM224B
HG003_chrY	CAT	exon	18436004	18436187	.	-	.	source_transcript=ENST00000729304.1;source_transcript_name=FAM224B-223;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729304.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729304.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729304.1;transcript_id=HG003_chrY_T0001350;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001350;transcript_name=HG003_chrY_T0001350;gene_name=FAM224B;ID=exon:HG003_chrY_T0001350:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729304.1;source_transcript_name=FAM224B-223;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729304.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729304.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729304.1;transcript_id=HG003_chrY_T0001350;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001350;transcript_name=HG003_chrY_T0001350;gene_name=FAM224B;ID=intron:HG003_chrY_T0001350:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437640	.	-	.	source_transcript=ENST00000729304.1;source_transcript_name=FAM224B-223;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729304.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729304.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729304.1;transcript_id=HG003_chrY_T0001350;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001350;transcript_name=HG003_chrY_T0001350;gene_name=FAM224B;ID=exon:HG003_chrY_T0001350:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437641	18438494	.	-	.	source_transcript=ENST00000729304.1;source_transcript_name=FAM224B-223;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729304.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729304.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729304.1;transcript_id=HG003_chrY_T0001350;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001350;transcript_name=HG003_chrY_T0001350;gene_name=FAM224B;ID=intron:HG003_chrY_T0001350:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18438495	18438592	.	-	.	source_transcript=ENST00000729304.1;source_transcript_name=FAM224B-223;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729304.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729304.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729304.1;transcript_id=HG003_chrY_T0001350;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001350;transcript_name=HG003_chrY_T0001350;gene_name=FAM224B;ID=exon:HG003_chrY_T0001350:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18438593	18440135	.	-	.	source_transcript=ENST00000729304.1;source_transcript_name=FAM224B-223;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729304.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729304.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729304.1;transcript_id=HG003_chrY_T0001350;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001350;transcript_name=HG003_chrY_T0001350;gene_name=FAM224B;ID=intron:HG003_chrY_T0001350:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440678	.	-	.	source_transcript=ENST00000729304.1;source_transcript_name=FAM224B-223;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729304.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729304.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729304.1;transcript_id=HG003_chrY_T0001350;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001350;transcript_name=HG003_chrY_T0001350;gene_name=FAM224B;ID=exon:HG003_chrY_T0001350:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18436004	18440631	1000	-	.	source_transcript=ENST00000729307.1;source_transcript_name=FAM224B-226;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729307.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729307.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729307.1;transcript_id=HG003_chrY_T0001351;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001351;gene_name=FAM224B;ID=HG003_chrY_T0001351;Name=FAM224B
HG003_chrY	CAT	exon	18436004	18436187	.	-	.	source_transcript=ENST00000729307.1;source_transcript_name=FAM224B-226;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729307.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729307.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729307.1;transcript_id=HG003_chrY_T0001351;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001351;transcript_name=HG003_chrY_T0001351;gene_name=FAM224B;ID=exon:HG003_chrY_T0001351:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729307.1;source_transcript_name=FAM224B-226;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729307.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729307.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729307.1;transcript_id=HG003_chrY_T0001351;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001351;transcript_name=HG003_chrY_T0001351;gene_name=FAM224B;ID=intron:HG003_chrY_T0001351:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18438592	.	-	.	source_transcript=ENST00000729307.1;source_transcript_name=FAM224B-226;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729307.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729307.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729307.1;transcript_id=HG003_chrY_T0001351;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001351;transcript_name=HG003_chrY_T0001351;gene_name=FAM224B;ID=exon:HG003_chrY_T0001351:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18438593	18440135	.	-	.	source_transcript=ENST00000729307.1;source_transcript_name=FAM224B-226;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729307.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729307.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729307.1;transcript_id=HG003_chrY_T0001351;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001351;transcript_name=HG003_chrY_T0001351;gene_name=FAM224B;ID=intron:HG003_chrY_T0001351:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440295	.	-	.	source_transcript=ENST00000729307.1;source_transcript_name=FAM224B-226;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729307.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729307.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729307.1;transcript_id=HG003_chrY_T0001351;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001351;transcript_name=HG003_chrY_T0001351;gene_name=FAM224B;ID=exon:HG003_chrY_T0001351:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440296	18440485	.	-	.	source_transcript=ENST00000729307.1;source_transcript_name=FAM224B-226;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729307.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729307.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729307.1;transcript_id=HG003_chrY_T0001351;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001351;transcript_name=HG003_chrY_T0001351;gene_name=FAM224B;ID=intron:HG003_chrY_T0001351:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440631	.	-	.	source_transcript=ENST00000729307.1;source_transcript_name=FAM224B-226;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729307.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729307.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729307.1;transcript_id=HG003_chrY_T0001351;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001351;transcript_name=HG003_chrY_T0001351;gene_name=FAM224B;ID=exon:HG003_chrY_T0001351:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18436004	18440626	1000	-	.	source_transcript=ENST00000729309.1;source_transcript_name=FAM224B-228;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729309.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729309.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729309.1;transcript_id=HG003_chrY_T0001352;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001352;gene_name=FAM224B;ID=HG003_chrY_T0001352;Name=FAM224B
HG003_chrY	CAT	exon	18436004	18436187	.	-	.	source_transcript=ENST00000729309.1;source_transcript_name=FAM224B-228;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729309.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729309.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729309.1;transcript_id=HG003_chrY_T0001352;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001352;transcript_name=HG003_chrY_T0001352;gene_name=FAM224B;ID=exon:HG003_chrY_T0001352:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18440135	.	-	.	source_transcript=ENST00000729309.1;source_transcript_name=FAM224B-228;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729309.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729309.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729309.1;transcript_id=HG003_chrY_T0001352;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001352;transcript_name=HG003_chrY_T0001352;gene_name=FAM224B;ID=intron:HG003_chrY_T0001352:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440295	.	-	.	source_transcript=ENST00000729309.1;source_transcript_name=FAM224B-228;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729309.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729309.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729309.1;transcript_id=HG003_chrY_T0001352;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001352;transcript_name=HG003_chrY_T0001352;gene_name=FAM224B;ID=exon:HG003_chrY_T0001352:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440296	18440485	.	-	.	source_transcript=ENST00000729309.1;source_transcript_name=FAM224B-228;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729309.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729309.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729309.1;transcript_id=HG003_chrY_T0001352;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001352;transcript_name=HG003_chrY_T0001352;gene_name=FAM224B;ID=intron:HG003_chrY_T0001352:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440626	.	-	.	source_transcript=ENST00000729309.1;source_transcript_name=FAM224B-228;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729309.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729309.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729309.1;transcript_id=HG003_chrY_T0001352;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001352;transcript_name=HG003_chrY_T0001352;gene_name=FAM224B;ID=exon:HG003_chrY_T0001352:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18436004	18440625	1000	-	.	source_transcript=ENST00000729310.1;source_transcript_name=FAM224B-229;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729310.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729310.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729310.1;transcript_id=HG003_chrY_T0001353;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001353;gene_name=FAM224B;ID=HG003_chrY_T0001353;Name=FAM224B
HG003_chrY	CAT	exon	18436004	18436187	.	-	.	source_transcript=ENST00000729310.1;source_transcript_name=FAM224B-229;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729310.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729310.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729310.1;transcript_id=HG003_chrY_T0001353;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001353;transcript_name=HG003_chrY_T0001353;gene_name=FAM224B;ID=exon:HG003_chrY_T0001353:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18436188	18437522	.	-	.	source_transcript=ENST00000729310.1;source_transcript_name=FAM224B-229;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729310.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729310.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729310.1;transcript_id=HG003_chrY_T0001353;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001353;transcript_name=HG003_chrY_T0001353;gene_name=FAM224B;ID=intron:HG003_chrY_T0001353:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18437523	18437612	.	-	.	source_transcript=ENST00000729310.1;source_transcript_name=FAM224B-229;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729310.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729310.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729310.1;transcript_id=HG003_chrY_T0001353;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001353;transcript_name=HG003_chrY_T0001353;gene_name=FAM224B;ID=exon:HG003_chrY_T0001353:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437613	18440135	.	-	.	source_transcript=ENST00000729310.1;source_transcript_name=FAM224B-229;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729310.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729310.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729310.1;transcript_id=HG003_chrY_T0001353;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001353;transcript_name=HG003_chrY_T0001353;gene_name=FAM224B;ID=intron:HG003_chrY_T0001353:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440369	.	-	.	source_transcript=ENST00000729310.1;source_transcript_name=FAM224B-229;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729310.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729310.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729310.1;transcript_id=HG003_chrY_T0001353;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001353;transcript_name=HG003_chrY_T0001353;gene_name=FAM224B;ID=exon:HG003_chrY_T0001353:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18440370	18440485	.	-	.	source_transcript=ENST00000729310.1;source_transcript_name=FAM224B-229;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729310.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729310.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729310.1;transcript_id=HG003_chrY_T0001353;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001353;transcript_name=HG003_chrY_T0001353;gene_name=FAM224B;ID=intron:HG003_chrY_T0001353:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440625	.	-	.	source_transcript=ENST00000729310.1;source_transcript_name=FAM224B-229;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729310.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729310.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729310.1;transcript_id=HG003_chrY_T0001353;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001353;transcript_name=HG003_chrY_T0001353;gene_name=FAM224B;ID=exon:HG003_chrY_T0001353:3;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18437225	18440626	1000	-	.	source_transcript=ENST00000729312.1;source_transcript_name=FAM224B-231;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729312.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729312.1;transcript_id=HG003_chrY_T0001354;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001354;gene_name=FAM224B;ID=HG003_chrY_T0001354;Name=FAM224B
HG003_chrY	CAT	exon	18437225	18437483	.	-	.	source_transcript=ENST00000729312.1;source_transcript_name=FAM224B-231;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729312.1;transcript_id=HG003_chrY_T0001354;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001354;transcript_name=HG003_chrY_T0001354;gene_name=FAM224B;ID=exon:HG003_chrY_T0001354:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18437484	18440135	.	-	.	source_transcript=ENST00000729312.1;source_transcript_name=FAM224B-231;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729312.1;transcript_id=HG003_chrY_T0001354;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001354;transcript_name=HG003_chrY_T0001354;gene_name=FAM224B;ID=intron:HG003_chrY_T0001354:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440136	18440626	.	-	.	source_transcript=ENST00000729312.1;source_transcript_name=FAM224B-231;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729312.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729312.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729312.1;transcript_id=HG003_chrY_T0001354;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001354;transcript_name=HG003_chrY_T0001354;gene_name=FAM224B;ID=exon:HG003_chrY_T0001354:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18438556	18440676	1000	-	.	source_transcript=ENST00000729313.1;source_transcript_name=FAM224B-232;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729313.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729313.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729313.1;transcript_id=HG003_chrY_T0001355;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_G0000447;transcript_name=HG003_chrY_T0001355;gene_name=FAM224B;ID=HG003_chrY_T0001355;Name=FAM224B
HG003_chrY	CAT	exon	18438556	18438592	.	-	.	source_transcript=ENST00000729313.1;source_transcript_name=FAM224B-232;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729313.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729313.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729313.1;transcript_id=HG003_chrY_T0001355;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001355;transcript_name=HG003_chrY_T0001355;gene_name=FAM224B;ID=exon:HG003_chrY_T0001355:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18438593	18439707	.	-	.	source_transcript=ENST00000729313.1;source_transcript_name=FAM224B-232;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729313.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729313.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729313.1;transcript_id=HG003_chrY_T0001355;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001355;transcript_name=HG003_chrY_T0001355;gene_name=FAM224B;ID=intron:HG003_chrY_T0001355:0;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18439708	18439904	.	-	.	source_transcript=ENST00000729313.1;source_transcript_name=FAM224B-232;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729313.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729313.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729313.1;transcript_id=HG003_chrY_T0001355;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001355;transcript_name=HG003_chrY_T0001355;gene_name=FAM224B;ID=exon:HG003_chrY_T0001355:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18439905	18440485	.	-	.	source_transcript=ENST00000729313.1;source_transcript_name=FAM224B-232;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729313.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729313.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729313.1;transcript_id=HG003_chrY_T0001355;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001355;transcript_name=HG003_chrY_T0001355;gene_name=FAM224B;ID=intron:HG003_chrY_T0001355:1;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18440486	18440676	.	-	.	source_transcript=ENST00000729313.1;source_transcript_name=FAM224B-232;source_gene=ENSG00000230663.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000230663.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729313.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729313.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224B;alternative_source_transcripts=ENST00000729313.1;transcript_id=HG003_chrY_T0001355;gene_id=HG003_chrY_G0000447;Parent=HG003_chrY_T0001355;transcript_name=HG003_chrY_T0001355;gene_name=FAM224B;ID=exon:HG003_chrY_T0001355:2;Name=FAM224B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18418679	18418791	.	+	.	source_gene_common_name=RNA5SP523;source_gene=ENSG00000252667.1;alternative_source_transcripts=ENST00000516506.1;gene_id=HG003_chrY_G0000448;gene_biotype=rRNA_pseudogene;gene_name=RNA5SP523;gene_sources=liftoff;ID=HG003_chrY_G0000448;Name=RNA5SP523
HG003_chrY	CAT	transcript	18418679	18418791	1000	+	.	source_transcript=ENST00000516858.1;source_transcript_name=RNA5SP523-201;source_gene=ENSG00000252667.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000252667.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000516858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516858.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP523;alternative_source_transcripts=ENST00000516506.1;transcript_id=HG003_chrY_T0001335;gene_id=HG003_chrY_G0000448;Parent=HG003_chrY_G0000448;transcript_name=HG003_chrY_T0001335;gene_name=RNA5SP523;ID=HG003_chrY_T0001335;Name=RNA5SP523
HG003_chrY	CAT	exon	18418679	18418791	.	+	.	source_transcript=ENST00000516858.1;source_transcript_name=RNA5SP523-201;source_gene=ENSG00000252667.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000252667.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000516858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516858.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP523;alternative_source_transcripts=ENST00000516506.1;transcript_id=HG003_chrY_T0001335;gene_id=HG003_chrY_G0000448;Parent=HG003_chrY_T0001335;transcript_name=HG003_chrY_T0001335;gene_name=RNA5SP523;ID=exon:HG003_chrY_T0001335:0;Name=RNA5SP523;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18420589	18420704	.	+	.	source_gene_common_name=RNA5SP522;source_gene=ENSG00000251953.1;alternative_source_transcripts=ENST00000516203.1;gene_id=HG003_chrY_G0000449;gene_biotype=rRNA_pseudogene;gene_name=RNA5SP522;gene_sources=liftoff;ID=HG003_chrY_G0000449;Name=RNA5SP522
HG003_chrY	CAT	transcript	18420589	18420704	1000	+	.	source_transcript=ENST00000516144.1;source_transcript_name=RNA5SP522-201;source_gene=ENSG00000251953.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000251953.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000516144.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516144.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP522;alternative_source_transcripts=ENST00000516203.1;transcript_id=HG003_chrY_T0001336;gene_id=HG003_chrY_G0000449;Parent=HG003_chrY_G0000449;transcript_name=HG003_chrY_T0001336;gene_name=RNA5SP522;ID=HG003_chrY_T0001336;Name=RNA5SP522
HG003_chrY	CAT	exon	18420589	18420704	.	+	.	source_transcript=ENST00000516144.1;source_transcript_name=RNA5SP522-201;source_gene=ENSG00000251953.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000251953.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000516144.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516144.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP522;alternative_source_transcripts=ENST00000516203.1;transcript_id=HG003_chrY_T0001336;gene_id=HG003_chrY_G0000449;Parent=HG003_chrY_T0001336;transcript_name=HG003_chrY_T0001336;gene_name=RNA5SP522;ID=exon:HG003_chrY_T0001336:0;Name=RNA5SP522;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18429778	18429867	.	-	.	source_gene_common_name=ENSG00000273966;source_gene=ENSG00000273966.1;alternative_source_transcripts=ENST00000615048.1;gene_id=HG003_chrY_G0000450;gene_biotype=misc_RNA;gene_name=ENSG00000273966;gene_sources=liftoff;ID=HG003_chrY_G0000450;Name=ENSG00000273966
HG003_chrY	CAT	transcript	18429778	18429867	1000	-	.	source_transcript=ENST00000615048.1;source_transcript_name=ENST00000615048;source_gene=ENSG00000273966.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000273966.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000615048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615048.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273966;alternative_source_transcripts=ENST00000615048.1;transcript_id=HG003_chrY_T0001337;gene_id=HG003_chrY_G0000450;Parent=HG003_chrY_G0000450;transcript_name=HG003_chrY_T0001337;gene_name=ENSG00000273966;ID=HG003_chrY_T0001337;Name=ENSG00000273966
HG003_chrY	CAT	exon	18429778	18429867	.	-	.	source_transcript=ENST00000615048.1;source_transcript_name=ENST00000615048;source_gene=ENSG00000273966.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000273966.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000615048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615048.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273966;alternative_source_transcripts=ENST00000615048.1;transcript_id=HG003_chrY_T0001337;gene_id=HG003_chrY_G0000450;Parent=HG003_chrY_T0001337;transcript_name=HG003_chrY_T0001337;gene_name=ENSG00000273966;ID=exon:HG003_chrY_T0001337:0;Name=ENSG00000273966;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18482066	18486649	.	-	.	source_gene_common_name=CLUHP2;source_gene=ENSG00000228945.3;gene_id=HG003_chrY_G0000451;gene_biotype=unprocessed_pseudogene;gene_name=CLUHP2;gene_sources=liftoff;ID=HG003_chrY_G0000451;Name=CLUHP2
HG003_chrY	CAT	transcript	18482066	18486649	1000	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_G0000451;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=HG003_chrY_T0001356;Name=CLUHP2
HG003_chrY	CAT	exon	18482066	18482193	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=exon:HG003_chrY_T0001356:0;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18482194	18482272	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=intron:HG003_chrY_T0001356:0;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18482273	18482356	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=exon:HG003_chrY_T0001356:1;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18482357	18482836	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=intron:HG003_chrY_T0001356:1;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18482837	18482935	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=exon:HG003_chrY_T0001356:2;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18482936	18483661	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=intron:HG003_chrY_T0001356:2;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18483662	18483715	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=exon:HG003_chrY_T0001356:3;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18483716	18483965	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=intron:HG003_chrY_T0001356:3;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18483966	18484037	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=exon:HG003_chrY_T0001356:4;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18484038	18484681	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=intron:HG003_chrY_T0001356:4;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18484682	18484789	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=exon:HG003_chrY_T0001356:5;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18484790	18484918	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=intron:HG003_chrY_T0001356:5;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18484919	18485064	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=exon:HG003_chrY_T0001356:6;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18485065	18485141	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=intron:HG003_chrY_T0001356:6;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18485142	18485581	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=exon:HG003_chrY_T0001356:7;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18485582	18486477	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=intron:HG003_chrY_T0001356:7;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18486478	18486649	.	-	.	source_transcript=ENST00000426660.1;source_transcript_name=CLUHP2-201;source_gene=ENSG00000228945.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228945.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426660.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426660.1;transcript_score=299.923;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP2;transcript_id=HG003_chrY_T0001356;gene_id=HG003_chrY_G0000451;Parent=HG003_chrY_T0001356;transcript_name=HG003_chrY_T0001356;gene_name=CLUHP2;ID=exon:HG003_chrY_T0001356:8;Name=CLUHP2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18489335	18490223	.	+	.	source_gene_common_name=TAF9P1;source_gene=ENSG00000226353.1;alternative_source_transcripts=ENST00000445421.1;gene_id=HG003_chrY_G0000452;gene_biotype=processed_pseudogene;gene_name=TAF9P1;gene_sources=liftoff;ID=HG003_chrY_G0000452;Name=TAF9P1
HG003_chrY	CAT	transcript	18489335	18490223	1000	+	.	source_transcript=ENST00000445421.1;source_transcript_name=TAF9P1-201;source_gene=ENSG00000226353.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000226353.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000445421.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445421.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAF9P1;alternative_source_transcripts=ENST00000445421.1;transcript_id=HG003_chrY_T0001357;gene_id=HG003_chrY_G0000452;Parent=HG003_chrY_G0000452;transcript_name=HG003_chrY_T0001357;gene_name=TAF9P1;ID=HG003_chrY_T0001357;Name=TAF9P1
HG003_chrY	CAT	exon	18489335	18489807	.	+	.	source_transcript=ENST00000445421.1;source_transcript_name=TAF9P1-201;source_gene=ENSG00000226353.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000226353.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000445421.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445421.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAF9P1;alternative_source_transcripts=ENST00000445421.1;transcript_id=HG003_chrY_T0001357;gene_id=HG003_chrY_G0000452;Parent=HG003_chrY_T0001357;transcript_name=HG003_chrY_T0001357;gene_name=TAF9P1;ID=exon:HG003_chrY_T0001357:0;Name=TAF9P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18489808	18490181	.	+	.	source_transcript=ENST00000445421.1;source_transcript_name=TAF9P1-201;source_gene=ENSG00000226353.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000226353.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000445421.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445421.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAF9P1;alternative_source_transcripts=ENST00000445421.1;transcript_id=HG003_chrY_T0001357;gene_id=HG003_chrY_G0000452;Parent=HG003_chrY_T0001357;transcript_name=HG003_chrY_T0001357;gene_name=TAF9P1;ID=intron:HG003_chrY_T0001357:0;Name=TAF9P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18490182	18490223	.	+	.	source_transcript=ENST00000445421.1;source_transcript_name=TAF9P1-201;source_gene=ENSG00000226353.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000226353.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000445421.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445421.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAF9P1;alternative_source_transcripts=ENST00000445421.1;transcript_id=HG003_chrY_T0001357;gene_id=HG003_chrY_G0000452;Parent=HG003_chrY_T0001357;transcript_name=HG003_chrY_T0001357;gene_name=TAF9P1;ID=exon:HG003_chrY_T0001357:1;Name=TAF9P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18563874	18590481	.	-	.	source_gene_common_name=ENSG00000298004;source_gene=ENSG00000298004.1;gene_id=HG003_chrY_G0000453;gene_biotype=lncRNA;gene_name=ENSG00000298004;gene_sources=liftoff;ID=HG003_chrY_G0000453;Name=ENSG00000298004
HG003_chrY	CAT	transcript	18563874	18590444	1000	-	.	source_transcript=ENST00000752432.1;source_transcript_name=ENST00000752432;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752432.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001358;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_G0000453;transcript_name=HG003_chrY_T0001358;gene_name=ENSG00000298004;ID=HG003_chrY_T0001358;Name=ENSG00000298004
HG003_chrY	CAT	exon	18563874	18564164	.	-	.	source_transcript=ENST00000752432.1;source_transcript_name=ENST00000752432;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001358;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001358;transcript_name=HG003_chrY_T0001358;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001358:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18564165	18565757	.	-	.	source_transcript=ENST00000752432.1;source_transcript_name=ENST00000752432;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001358;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001358;transcript_name=HG003_chrY_T0001358;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001358:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18565758	18565882	.	-	.	source_transcript=ENST00000752432.1;source_transcript_name=ENST00000752432;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001358;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001358;transcript_name=HG003_chrY_T0001358;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001358:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18565883	18566773	.	-	.	source_transcript=ENST00000752432.1;source_transcript_name=ENST00000752432;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001358;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001358;transcript_name=HG003_chrY_T0001358;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001358:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18566774	18566992	.	-	.	source_transcript=ENST00000752432.1;source_transcript_name=ENST00000752432;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001358;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001358;transcript_name=HG003_chrY_T0001358;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001358:2;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18566993	18590127	.	-	.	source_transcript=ENST00000752432.1;source_transcript_name=ENST00000752432;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001358;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001358;transcript_name=HG003_chrY_T0001358;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001358:2;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18590128	18590444	.	-	.	source_transcript=ENST00000752432.1;source_transcript_name=ENST00000752432;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001358;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001358;transcript_name=HG003_chrY_T0001358;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001358:3;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18574829	18590531	1000	-	.	source_transcript=ENST00000752433.1;source_transcript_name=ENST00000752433;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752433.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001360;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_G0000453;transcript_name=HG003_chrY_T0001360;gene_name=ENSG00000298004;ID=HG003_chrY_T0001360;Name=ENSG00000298004
HG003_chrY	CAT	exon	18574829	18575872	.	-	.	source_transcript=ENST00000752433.1;source_transcript_name=ENST00000752433;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001360;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001360;transcript_name=HG003_chrY_T0001360;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001360:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18575873	18579559	.	-	.	source_transcript=ENST00000752433.1;source_transcript_name=ENST00000752433;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001360;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001360;transcript_name=HG003_chrY_T0001360;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001360:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18579560	18579684	.	-	.	source_transcript=ENST00000752433.1;source_transcript_name=ENST00000752433;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001360;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001360;transcript_name=HG003_chrY_T0001360;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001360:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18579685	18590127	.	-	.	source_transcript=ENST00000752433.1;source_transcript_name=ENST00000752433;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001360;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001360;transcript_name=HG003_chrY_T0001360;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001360:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18590128	18590531	.	-	.	source_transcript=ENST00000752433.1;source_transcript_name=ENST00000752433;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001360;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001360;transcript_name=HG003_chrY_T0001360;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001360:2;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18574832	18590481	1000	-	.	source_transcript=ENST00000752434.1;source_transcript_name=ENST00000752434;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752434.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001361;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_G0000453;transcript_name=HG003_chrY_T0001361;gene_name=ENSG00000298004;ID=HG003_chrY_T0001361;Name=ENSG00000298004
HG003_chrY	CAT	exon	18574832	18575872	.	-	.	source_transcript=ENST00000752434.1;source_transcript_name=ENST00000752434;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001361;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001361;transcript_name=HG003_chrY_T0001361;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001361:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18575873	18590127	.	-	.	source_transcript=ENST00000752434.1;source_transcript_name=ENST00000752434;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001361;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001361;transcript_name=HG003_chrY_T0001361;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001361:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18590128	18590481	.	-	.	source_transcript=ENST00000752434.1;source_transcript_name=ENST00000752434;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001361;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001361;transcript_name=HG003_chrY_T0001361;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001361:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18574837	18590481	1000	-	.	source_transcript=ENST00000752435.1;source_transcript_name=ENST00000752435;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752435.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001362;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_G0000453;transcript_name=HG003_chrY_T0001362;gene_name=ENSG00000298004;ID=HG003_chrY_T0001362;Name=ENSG00000298004
HG003_chrY	CAT	exon	18574837	18575872	.	-	.	source_transcript=ENST00000752435.1;source_transcript_name=ENST00000752435;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001362;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001362;transcript_name=HG003_chrY_T0001362;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001362:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18575873	18579559	.	-	.	source_transcript=ENST00000752435.1;source_transcript_name=ENST00000752435;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001362;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001362;transcript_name=HG003_chrY_T0001362;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001362:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18579560	18579684	.	-	.	source_transcript=ENST00000752435.1;source_transcript_name=ENST00000752435;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001362;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001362;transcript_name=HG003_chrY_T0001362;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001362:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18579685	18590196	.	-	.	source_transcript=ENST00000752435.1;source_transcript_name=ENST00000752435;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001362;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001362;transcript_name=HG003_chrY_T0001362;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001362:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18590197	18590481	.	-	.	source_transcript=ENST00000752435.1;source_transcript_name=ENST00000752435;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001362;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001362;transcript_name=HG003_chrY_T0001362;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001362:2;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18574837	18590475	1000	-	.	source_transcript=ENST00000752436.1;source_transcript_name=ENST00000752436;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752436.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001363;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_G0000453;transcript_name=HG003_chrY_T0001363;gene_name=ENSG00000298004;ID=HG003_chrY_T0001363;Name=ENSG00000298004
HG003_chrY	CAT	exon	18574837	18575872	.	-	.	source_transcript=ENST00000752436.1;source_transcript_name=ENST00000752436;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001363;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001363;transcript_name=HG003_chrY_T0001363;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001363:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18575873	18579559	.	-	.	source_transcript=ENST00000752436.1;source_transcript_name=ENST00000752436;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001363;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001363;transcript_name=HG003_chrY_T0001363;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001363:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18579560	18579680	.	-	.	source_transcript=ENST00000752436.1;source_transcript_name=ENST00000752436;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001363;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001363;transcript_name=HG003_chrY_T0001363;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001363:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18579681	18590127	.	-	.	source_transcript=ENST00000752436.1;source_transcript_name=ENST00000752436;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001363;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001363;transcript_name=HG003_chrY_T0001363;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001363:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18590128	18590475	.	-	.	source_transcript=ENST00000752436.1;source_transcript_name=ENST00000752436;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001363;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001363;transcript_name=HG003_chrY_T0001363;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001363:2;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18575365	18590444	1000	-	.	source_transcript=ENST00000752438.1;source_transcript_name=ENST00000752438;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752438.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001364;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_G0000453;transcript_name=HG003_chrY_T0001364;gene_name=ENSG00000298004;ID=HG003_chrY_T0001364;Name=ENSG00000298004
HG003_chrY	CAT	exon	18575365	18575872	.	-	.	source_transcript=ENST00000752438.1;source_transcript_name=ENST00000752438;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001364;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001364;transcript_name=HG003_chrY_T0001364;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001364:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18575873	18590196	.	-	.	source_transcript=ENST00000752438.1;source_transcript_name=ENST00000752438;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001364;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001364;transcript_name=HG003_chrY_T0001364;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001364:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18590197	18590444	.	-	.	source_transcript=ENST00000752438.1;source_transcript_name=ENST00000752438;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001364;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001364;transcript_name=HG003_chrY_T0001364;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001364:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18575368	18590471	1000	-	.	source_transcript=ENST00000752437.1;source_transcript_name=ENST00000752437;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752437.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001365;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_G0000453;transcript_name=HG003_chrY_T0001365;gene_name=ENSG00000298004;ID=HG003_chrY_T0001365;Name=ENSG00000298004
HG003_chrY	CAT	exon	18575368	18575872	.	-	.	source_transcript=ENST00000752437.1;source_transcript_name=ENST00000752437;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001365;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001365;transcript_name=HG003_chrY_T0001365;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001365:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18575873	18576487	.	-	.	source_transcript=ENST00000752437.1;source_transcript_name=ENST00000752437;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001365;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001365;transcript_name=HG003_chrY_T0001365;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001365:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18576488	18576539	.	-	.	source_transcript=ENST00000752437.1;source_transcript_name=ENST00000752437;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001365;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001365;transcript_name=HG003_chrY_T0001365;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001365:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18576540	18579559	.	-	.	source_transcript=ENST00000752437.1;source_transcript_name=ENST00000752437;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001365;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001365;transcript_name=HG003_chrY_T0001365;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001365:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18579560	18579684	.	-	.	source_transcript=ENST00000752437.1;source_transcript_name=ENST00000752437;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001365;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001365;transcript_name=HG003_chrY_T0001365;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001365:2;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18579685	18590127	.	-	.	source_transcript=ENST00000752437.1;source_transcript_name=ENST00000752437;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001365;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001365;transcript_name=HG003_chrY_T0001365;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001365:2;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18590128	18590471	.	-	.	source_transcript=ENST00000752437.1;source_transcript_name=ENST00000752437;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001365;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001365;transcript_name=HG003_chrY_T0001365;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001365:3;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18578237	18590455	1000	-	.	source_transcript=ENST00000752439.1;source_transcript_name=ENST00000752439;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752439.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001366;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_G0000453;transcript_name=HG003_chrY_T0001366;gene_name=ENSG00000298004;ID=HG003_chrY_T0001366;Name=ENSG00000298004
HG003_chrY	CAT	exon	18578237	18579684	.	-	.	source_transcript=ENST00000752439.1;source_transcript_name=ENST00000752439;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001366;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001366;transcript_name=HG003_chrY_T0001366;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001366:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18579685	18590196	.	-	.	source_transcript=ENST00000752439.1;source_transcript_name=ENST00000752439;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001366;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001366;transcript_name=HG003_chrY_T0001366;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001366:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18590197	18590455	.	-	.	source_transcript=ENST00000752439.1;source_transcript_name=ENST00000752439;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001366;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001366;transcript_name=HG003_chrY_T0001366;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001366:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18578388	18590569	1000	-	.	source_transcript=ENST00000752440.1;source_transcript_name=ENST00000752440;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752440.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001367;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_G0000453;transcript_name=HG003_chrY_T0001367;gene_name=ENSG00000298004;ID=HG003_chrY_T0001367;Name=ENSG00000298004
HG003_chrY	CAT	exon	18578388	18579684	.	-	.	source_transcript=ENST00000752440.1;source_transcript_name=ENST00000752440;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001367;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001367;transcript_name=HG003_chrY_T0001367;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001367:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18579685	18590127	.	-	.	source_transcript=ENST00000752440.1;source_transcript_name=ENST00000752440;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001367;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001367;transcript_name=HG003_chrY_T0001367;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001367:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18590128	18590569	.	-	.	source_transcript=ENST00000752440.1;source_transcript_name=ENST00000752440;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001367;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001367;transcript_name=HG003_chrY_T0001367;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001367:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18579521	18590471	1000	-	.	source_transcript=ENST00000752441.1;source_transcript_name=ENST00000752441;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752441.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752441.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001368;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_G0000453;transcript_name=HG003_chrY_T0001368;gene_name=ENSG00000298004;ID=HG003_chrY_T0001368;Name=ENSG00000298004
HG003_chrY	CAT	exon	18579521	18579680	.	-	.	source_transcript=ENST00000752441.1;source_transcript_name=ENST00000752441;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752441.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001368;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001368;transcript_name=HG003_chrY_T0001368;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001368:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18579681	18590127	.	-	.	source_transcript=ENST00000752441.1;source_transcript_name=ENST00000752441;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752441.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001368;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001368;transcript_name=HG003_chrY_T0001368;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001368:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18590128	18590471	.	-	.	source_transcript=ENST00000752441.1;source_transcript_name=ENST00000752441;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752441.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001368;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001368;transcript_name=HG003_chrY_T0001368;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001368:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18584546	18590434	1000	-	.	source_transcript=ENST00000752442.1;source_transcript_name=ENST00000752442;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752442.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752442.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001370;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_G0000453;transcript_name=HG003_chrY_T0001370;gene_name=ENSG00000298004;ID=HG003_chrY_T0001370;Name=ENSG00000298004
HG003_chrY	CAT	exon	18584546	18585179	.	-	.	source_transcript=ENST00000752442.1;source_transcript_name=ENST00000752442;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752442.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752442.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001370;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001370;transcript_name=HG003_chrY_T0001370;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001370:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18585180	18590127	.	-	.	source_transcript=ENST00000752442.1;source_transcript_name=ENST00000752442;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752442.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752442.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001370;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001370;transcript_name=HG003_chrY_T0001370;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001370:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18590128	18590434	.	-	.	source_transcript=ENST00000752442.1;source_transcript_name=ENST00000752442;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752442.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752442.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001370;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001370;transcript_name=HG003_chrY_T0001370;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001370:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18587976	18590481	1000	-	.	source_transcript=ENST00000752443.1;source_transcript_name=ENST00000752443;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752443.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752443.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001372;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_G0000453;transcript_name=HG003_chrY_T0001372;gene_name=ENSG00000298004;ID=HG003_chrY_T0001372;Name=ENSG00000298004
HG003_chrY	CAT	exon	18587976	18588539	.	-	.	source_transcript=ENST00000752443.1;source_transcript_name=ENST00000752443;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752443.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752443.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001372;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001372;transcript_name=HG003_chrY_T0001372;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001372:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18588540	18590127	.	-	.	source_transcript=ENST00000752443.1;source_transcript_name=ENST00000752443;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752443.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752443.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001372;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001372;transcript_name=HG003_chrY_T0001372;gene_name=ENSG00000298004;ID=intron:HG003_chrY_T0001372:0;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18590128	18590481	.	-	.	source_transcript=ENST00000752443.1;source_transcript_name=ENST00000752443;source_gene=ENSG00000298004.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000298004.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000752443.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000752443.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000298004;transcript_id=HG003_chrY_T0001372;gene_id=HG003_chrY_G0000453;Parent=HG003_chrY_T0001372;transcript_name=HG003_chrY_T0001372;gene_name=ENSG00000298004;ID=exon:HG003_chrY_T0001372:1;Name=ENSG00000298004;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18566780	18568997	.	-	.	source_gene_common_name=ENSG00000275578;source_gene=ENSG00000275578.1;alternative_source_transcripts=ENST00000618226.1;gene_id=HG003_chrY_G0000454;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000275578;gene_sources=liftoff;ID=HG003_chrY_G0000454;Name=ENSG00000275578
HG003_chrY	CAT	transcript	18566780	18568997	1000	-	.	source_transcript=ENST00000618226.1;source_transcript_name=ENST00000618226;source_gene=ENSG00000275578.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000275578.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000618226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618226.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275578;alternative_source_transcripts=ENST00000618226.1;transcript_id=HG003_chrY_T0001359;gene_id=HG003_chrY_G0000454;Parent=HG003_chrY_G0000454;transcript_name=HG003_chrY_T0001359;gene_name=ENSG00000275578;ID=HG003_chrY_T0001359;Name=ENSG00000275578
HG003_chrY	CAT	exon	18566780	18566990	.	-	.	source_transcript=ENST00000618226.1;source_transcript_name=ENST00000618226;source_gene=ENSG00000275578.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000275578.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000618226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618226.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275578;alternative_source_transcripts=ENST00000618226.1;transcript_id=HG003_chrY_T0001359;gene_id=HG003_chrY_G0000454;Parent=HG003_chrY_T0001359;transcript_name=HG003_chrY_T0001359;gene_name=ENSG00000275578;ID=exon:HG003_chrY_T0001359:0;Name=ENSG00000275578;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18566991	18568810	.	-	.	source_transcript=ENST00000618226.1;source_transcript_name=ENST00000618226;source_gene=ENSG00000275578.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000275578.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000618226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618226.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275578;alternative_source_transcripts=ENST00000618226.1;transcript_id=HG003_chrY_T0001359;gene_id=HG003_chrY_G0000454;Parent=HG003_chrY_T0001359;transcript_name=HG003_chrY_T0001359;gene_name=ENSG00000275578;ID=intron:HG003_chrY_T0001359:0;Name=ENSG00000275578;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18568811	18568997	.	-	.	source_transcript=ENST00000618226.1;source_transcript_name=ENST00000618226;source_gene=ENSG00000275578.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000275578.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000618226.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618226.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000275578;alternative_source_transcripts=ENST00000618226.1;transcript_id=HG003_chrY_T0001359;gene_id=HG003_chrY_G0000454;Parent=HG003_chrY_T0001359;transcript_name=HG003_chrY_T0001359;gene_name=ENSG00000275578;ID=exon:HG003_chrY_T0001359:1;Name=ENSG00000275578;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18582411	18583990	.	+	.	source_gene_common_name=CDY5P;source_gene=ENSG00000226449.1;alternative_source_transcripts=ENST00000411487.1;gene_id=HG003_chrY_G0000455;gene_biotype=unprocessed_pseudogene;gene_name=CDY5P;gene_sources=liftoff;ID=HG003_chrY_G0000455;Name=CDY5P
HG003_chrY	CAT	transcript	18582411	18583990	1000	+	.	source_transcript=ENST00000411487.1;source_transcript_name=CDY5P-201;source_gene=ENSG00000226449.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226449.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000411487.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411487.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY5P;alternative_source_transcripts=ENST00000411487.1;transcript_id=HG003_chrY_T0001369;gene_id=HG003_chrY_G0000455;Parent=HG003_chrY_G0000455;transcript_name=HG003_chrY_T0001369;gene_name=CDY5P;ID=HG003_chrY_T0001369;Name=CDY5P
HG003_chrY	CAT	exon	18582411	18583990	.	+	.	source_transcript=ENST00000411487.1;source_transcript_name=CDY5P-201;source_gene=ENSG00000226449.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226449.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000411487.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411487.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY5P;alternative_source_transcripts=ENST00000411487.1;transcript_id=HG003_chrY_T0001369;gene_id=HG003_chrY_G0000455;Parent=HG003_chrY_T0001369;transcript_name=HG003_chrY_T0001369;gene_name=CDY5P;ID=exon:HG003_chrY_T0001369:0;Name=CDY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18587565	18587893	.	+	.	source_gene_common_name=ELOCP36;source_gene=ENSG00000225896.1;alternative_source_transcripts=ENST00000425789.1;gene_id=HG003_chrY_G0000456;gene_biotype=processed_pseudogene;gene_name=ELOCP36;gene_sources=liftoff;ID=HG003_chrY_G0000456;Name=ELOCP36
HG003_chrY	CAT	transcript	18587565	18587893	1000	+	.	source_transcript=ENST00000425789.1;source_transcript_name=ELOCP36-201;source_gene=ENSG00000225896.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000225896.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000425789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425789.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP36;alternative_source_transcripts=ENST00000425789.1;transcript_id=HG003_chrY_T0001371;gene_id=HG003_chrY_G0000456;Parent=HG003_chrY_G0000456;transcript_name=HG003_chrY_T0001371;gene_name=ELOCP36;ID=HG003_chrY_T0001371;Name=ELOCP36
HG003_chrY	CAT	exon	18587565	18587893	.	+	.	source_transcript=ENST00000425789.1;source_transcript_name=ELOCP36-201;source_gene=ENSG00000225896.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000225896.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000425789.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425789.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP36;alternative_source_transcripts=ENST00000425789.1;transcript_id=HG003_chrY_T0001371;gene_id=HG003_chrY_G0000456;Parent=HG003_chrY_T0001371;transcript_name=HG003_chrY_T0001371;gene_name=ELOCP36;ID=exon:HG003_chrY_T0001371:0;Name=ELOCP36;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18617816	18618940	.	-	.	source_gene_common_name=ACTG1P11;source_gene=ENSG00000229465.1;alternative_source_transcripts=ENST00000415776.1;gene_id=HG003_chrY_G0000457;gene_biotype=processed_pseudogene;gene_name=ACTG1P11;gene_sources=liftoff;ID=HG003_chrY_G0000457;Name=ACTG1P11
HG003_chrY	CAT	transcript	18617816	18618940	1000	-	.	source_transcript=ENST00000425411.1;source_transcript_name=ACTG1P11-201;source_gene=ENSG00000229465.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229465.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000425411.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425411.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ACTG1P11;alternative_source_transcripts=ENST00000415776.1;transcript_id=HG003_chrY_T0001373;gene_id=HG003_chrY_G0000457;Parent=HG003_chrY_G0000457;transcript_name=HG003_chrY_T0001373;gene_name=ACTG1P11;ID=HG003_chrY_T0001373;Name=ACTG1P11
HG003_chrY	CAT	exon	18617816	18618940	.	-	.	source_transcript=ENST00000425411.1;source_transcript_name=ACTG1P11-201;source_gene=ENSG00000229465.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229465.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000425411.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425411.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ACTG1P11;alternative_source_transcripts=ENST00000415776.1;transcript_id=HG003_chrY_T0001373;gene_id=HG003_chrY_G0000457;Parent=HG003_chrY_T0001373;transcript_name=HG003_chrY_T0001373;gene_name=ACTG1P11;ID=exon:HG003_chrY_T0001373:0;Name=ACTG1P11;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18629795	18631375	.	-	.	source_gene_common_name=XKRYP7;source_gene=ENSG00000290725.1;gene_id=HG003_chrY_G0000458;gene_biotype=lncRNA;gene_name=XKRYP7;gene_sources=liftoff;ID=HG003_chrY_G0000458;Name=XKRYP7
HG003_chrY	CAT	transcript	18629795	18631375	1000	-	.	source_transcript=ENST00000623874.1;source_transcript_name=XKRYP7-202;source_gene=ENSG00000290725.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290725.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000623874.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000623874.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP7;transcript_id=HG003_chrY_T0001374;gene_id=HG003_chrY_G0000458;Parent=HG003_chrY_G0000458;transcript_name=HG003_chrY_T0001374;gene_name=XKRYP7;ID=HG003_chrY_T0001374;Name=XKRYP7
HG003_chrY	CAT	exon	18629795	18631375	.	-	.	source_transcript=ENST00000623874.1;source_transcript_name=XKRYP7-202;source_gene=ENSG00000290725.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290725.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000623874.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000623874.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP7;transcript_id=HG003_chrY_T0001374;gene_id=HG003_chrY_G0000458;Parent=HG003_chrY_T0001374;transcript_name=HG003_chrY_T0001374;gene_name=XKRYP7;ID=exon:HG003_chrY_T0001374:0;Name=XKRYP7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18629938	18638215	.	-	.	source_gene_common_name=XKRYP7;source_gene=ENSG00000244646.5;gene_id=HG003_chrY_G0000459;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=XKRYP7;gene_sources=liftoff;ID=HG003_chrY_G0000459;Name=XKRYP7
HG003_chrY	CAT	transcript	18629938	18638215	1000	-	.	source_transcript=ENST00000442362.2;source_transcript_name=XKRYP7-201;source_gene=ENSG00000244646.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000244646.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442362.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442362.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP7;transcript_id=HG003_chrY_T0001375;gene_id=HG003_chrY_G0000459;Parent=HG003_chrY_G0000459;transcript_name=HG003_chrY_T0001375;gene_name=XKRYP7;ID=HG003_chrY_T0001375;Name=XKRYP7
HG003_chrY	CAT	exon	18629938	18630695	.	-	.	source_transcript=ENST00000442362.2;source_transcript_name=XKRYP7-201;source_gene=ENSG00000244646.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000244646.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442362.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442362.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP7;transcript_id=HG003_chrY_T0001375;gene_id=HG003_chrY_G0000459;Parent=HG003_chrY_T0001375;transcript_name=HG003_chrY_T0001375;gene_name=XKRYP7;ID=exon:HG003_chrY_T0001375:0;Name=XKRYP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18630696	18637880	.	-	.	source_transcript=ENST00000442362.2;source_transcript_name=XKRYP7-201;source_gene=ENSG00000244646.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000244646.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442362.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442362.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP7;transcript_id=HG003_chrY_T0001375;gene_id=HG003_chrY_G0000459;Parent=HG003_chrY_T0001375;transcript_name=HG003_chrY_T0001375;gene_name=XKRYP7;ID=intron:HG003_chrY_T0001375:0;Name=XKRYP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18637881	18638215	.	-	.	source_transcript=ENST00000442362.2;source_transcript_name=XKRYP7-201;source_gene=ENSG00000244646.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000244646.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000442362.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000442362.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP7;transcript_id=HG003_chrY_T0001375;gene_id=HG003_chrY_G0000459;Parent=HG003_chrY_T0001375;transcript_name=HG003_chrY_T0001375;gene_name=XKRYP7;ID=exon:HG003_chrY_T0001375:1;Name=XKRYP7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18643025	18645630	.	+	.	source_gene_common_name=USP9YP23;source_gene=ENSG00000223555.1;alternative_source_transcripts=ENST00000455085.1;gene_id=HG003_chrY_G0000460;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP23;gene_sources=liftoff;ID=HG003_chrY_G0000460;Name=USP9YP23
HG003_chrY	CAT	transcript	18643025	18645630	1000	+	.	source_transcript=ENST00000455085.1;source_transcript_name=USP9YP23-201;source_gene=ENSG00000223555.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223555.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455085.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455085.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP23;alternative_source_transcripts=ENST00000455085.1;transcript_id=HG003_chrY_T0001376;gene_id=HG003_chrY_G0000460;Parent=HG003_chrY_G0000460;transcript_name=HG003_chrY_T0001376;gene_name=USP9YP23;ID=HG003_chrY_T0001376;Name=USP9YP23
HG003_chrY	CAT	exon	18643025	18643150	.	+	.	source_transcript=ENST00000455085.1;source_transcript_name=USP9YP23-201;source_gene=ENSG00000223555.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223555.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455085.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455085.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP23;alternative_source_transcripts=ENST00000455085.1;transcript_id=HG003_chrY_T0001376;gene_id=HG003_chrY_G0000460;Parent=HG003_chrY_T0001376;transcript_name=HG003_chrY_T0001376;gene_name=USP9YP23;ID=exon:HG003_chrY_T0001376:0;Name=USP9YP23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18643151	18643724	.	+	.	source_transcript=ENST00000455085.1;source_transcript_name=USP9YP23-201;source_gene=ENSG00000223555.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223555.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455085.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455085.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP23;alternative_source_transcripts=ENST00000455085.1;transcript_id=HG003_chrY_T0001376;gene_id=HG003_chrY_G0000460;Parent=HG003_chrY_T0001376;transcript_name=HG003_chrY_T0001376;gene_name=USP9YP23;ID=intron:HG003_chrY_T0001376:0;Name=USP9YP23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18643725	18643816	.	+	.	source_transcript=ENST00000455085.1;source_transcript_name=USP9YP23-201;source_gene=ENSG00000223555.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223555.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455085.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455085.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP23;alternative_source_transcripts=ENST00000455085.1;transcript_id=HG003_chrY_T0001376;gene_id=HG003_chrY_G0000460;Parent=HG003_chrY_T0001376;transcript_name=HG003_chrY_T0001376;gene_name=USP9YP23;ID=exon:HG003_chrY_T0001376:1;Name=USP9YP23;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18643817	18645441	.	+	.	source_transcript=ENST00000455085.1;source_transcript_name=USP9YP23-201;source_gene=ENSG00000223555.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223555.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455085.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455085.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP23;alternative_source_transcripts=ENST00000455085.1;transcript_id=HG003_chrY_T0001376;gene_id=HG003_chrY_G0000460;Parent=HG003_chrY_T0001376;transcript_name=HG003_chrY_T0001376;gene_name=USP9YP23;ID=intron:HG003_chrY_T0001376:1;Name=USP9YP23;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18645442	18645630	.	+	.	source_transcript=ENST00000455085.1;source_transcript_name=USP9YP23-201;source_gene=ENSG00000223555.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223555.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455085.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455085.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP23;alternative_source_transcripts=ENST00000455085.1;transcript_id=HG003_chrY_T0001376;gene_id=HG003_chrY_G0000460;Parent=HG003_chrY_T0001376;transcript_name=HG003_chrY_T0001376;gene_name=USP9YP23;ID=exon:HG003_chrY_T0001376:2;Name=USP9YP23;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18649130	18650298	.	-	.	source_gene_common_name=USP9YP15;source_gene=ENSG00000233120.1;gene_id=HG003_chrY_G0000461;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP15;gene_sources=liftoff;ID=HG003_chrY_G0000461;Name=USP9YP15
HG003_chrY	CAT	transcript	18649130	18650298	1000	-	.	source_transcript=ENST00000442391.1;source_transcript_name=USP9YP15-201;source_gene=ENSG00000233120.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233120.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000442391.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442391.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP15;transcript_id=HG003_chrY_T0001377;gene_id=HG003_chrY_G0000461;Parent=HG003_chrY_G0000461;transcript_name=HG003_chrY_T0001377;gene_name=USP9YP15;ID=HG003_chrY_T0001377;Name=USP9YP15
HG003_chrY	CAT	exon	18649130	18649225	.	-	.	source_transcript=ENST00000442391.1;source_transcript_name=USP9YP15-201;source_gene=ENSG00000233120.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233120.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000442391.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP15;transcript_id=HG003_chrY_T0001377;gene_id=HG003_chrY_G0000461;Parent=HG003_chrY_T0001377;transcript_name=HG003_chrY_T0001377;gene_name=USP9YP15;ID=exon:HG003_chrY_T0001377:0;Name=USP9YP15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18649226	18649605	.	-	.	source_transcript=ENST00000442391.1;source_transcript_name=USP9YP15-201;source_gene=ENSG00000233120.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233120.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000442391.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP15;transcript_id=HG003_chrY_T0001377;gene_id=HG003_chrY_G0000461;Parent=HG003_chrY_T0001377;transcript_name=HG003_chrY_T0001377;gene_name=USP9YP15;ID=intron:HG003_chrY_T0001377:0;Name=USP9YP15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18649606	18649764	.	-	.	source_transcript=ENST00000442391.1;source_transcript_name=USP9YP15-201;source_gene=ENSG00000233120.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233120.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000442391.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP15;transcript_id=HG003_chrY_T0001377;gene_id=HG003_chrY_G0000461;Parent=HG003_chrY_T0001377;transcript_name=HG003_chrY_T0001377;gene_name=USP9YP15;ID=exon:HG003_chrY_T0001377:1;Name=USP9YP15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18649765	18649976	.	-	.	source_transcript=ENST00000442391.1;source_transcript_name=USP9YP15-201;source_gene=ENSG00000233120.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233120.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000442391.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP15;transcript_id=HG003_chrY_T0001377;gene_id=HG003_chrY_G0000461;Parent=HG003_chrY_T0001377;transcript_name=HG003_chrY_T0001377;gene_name=USP9YP15;ID=intron:HG003_chrY_T0001377:1;Name=USP9YP15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18649977	18650005	.	-	.	source_transcript=ENST00000442391.1;source_transcript_name=USP9YP15-201;source_gene=ENSG00000233120.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233120.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000442391.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP15;transcript_id=HG003_chrY_T0001377;gene_id=HG003_chrY_G0000461;Parent=HG003_chrY_T0001377;transcript_name=HG003_chrY_T0001377;gene_name=USP9YP15;ID=exon:HG003_chrY_T0001377:2;Name=USP9YP15;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18650006	18650160	.	-	.	source_transcript=ENST00000442391.1;source_transcript_name=USP9YP15-201;source_gene=ENSG00000233120.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233120.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000442391.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP15;transcript_id=HG003_chrY_T0001377;gene_id=HG003_chrY_G0000461;Parent=HG003_chrY_T0001377;transcript_name=HG003_chrY_T0001377;gene_name=USP9YP15;ID=intron:HG003_chrY_T0001377:2;Name=USP9YP15;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18650161	18650298	.	-	.	source_transcript=ENST00000442391.1;source_transcript_name=USP9YP15-201;source_gene=ENSG00000233120.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233120.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000442391.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442391.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP15;transcript_id=HG003_chrY_T0001377;gene_id=HG003_chrY_G0000461;Parent=HG003_chrY_T0001377;transcript_name=HG003_chrY_T0001377;gene_name=USP9YP15;ID=exon:HG003_chrY_T0001377:3;Name=USP9YP15;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18649818	18649977	.	-	.	source_gene_common_name=RNU1-95P;source_gene=ENSG00000252166.1;gene_id=HG003_chrY_G0000462;gene_biotype=snRNA;gene_name=RNU1-95P;gene_sources=liftoff;ID=HG003_chrY_G0000462;Name=RNU1-95P
HG003_chrY	CAT	transcript	18649818	18649977	1000	-	.	source_transcript=ENST00000516357.1;source_transcript_name=RNU1-95P-201;source_gene=ENSG00000252166.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252166.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516357.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516357.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-95P;transcript_id=HG003_chrY_T0001378;gene_id=HG003_chrY_G0000462;Parent=HG003_chrY_G0000462;transcript_name=HG003_chrY_T0001378;gene_name=RNU1-95P;ID=HG003_chrY_T0001378;Name=RNU1-95P
HG003_chrY	CAT	exon	18649818	18649977	.	-	.	source_transcript=ENST00000516357.1;source_transcript_name=RNU1-95P-201;source_gene=ENSG00000252166.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252166.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516357.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516357.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-95P;transcript_id=HG003_chrY_T0001378;gene_id=HG003_chrY_G0000462;Parent=HG003_chrY_T0001378;transcript_name=HG003_chrY_T0001378;gene_name=RNU1-95P;ID=exon:HG003_chrY_T0001378:0;Name=RNU1-95P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18658723	18661511	.	-	.	source_gene_common_name=TRAPPC2P8;source_gene=ENSG00000225895.1;gene_id=HG003_chrY_G0000463;gene_biotype=unprocessed_pseudogene;gene_name=TRAPPC2P8;gene_sources=liftoff;ID=HG003_chrY_G0000463;Name=TRAPPC2P8
HG003_chrY	CAT	transcript	18658723	18661511	1000	-	.	source_transcript=ENST00000440676.1;source_transcript_name=TRAPPC2P8-201;source_gene=ENSG00000225895.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225895.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440676.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P8;transcript_id=HG003_chrY_T0001379;gene_id=HG003_chrY_G0000463;Parent=HG003_chrY_G0000463;transcript_name=HG003_chrY_T0001379;gene_name=TRAPPC2P8;ID=HG003_chrY_T0001379;Name=TRAPPC2P8
HG003_chrY	CAT	exon	18658723	18658878	.	-	.	source_transcript=ENST00000440676.1;source_transcript_name=TRAPPC2P8-201;source_gene=ENSG00000225895.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225895.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440676.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P8;transcript_id=HG003_chrY_T0001379;gene_id=HG003_chrY_G0000463;Parent=HG003_chrY_T0001379;transcript_name=HG003_chrY_T0001379;gene_name=TRAPPC2P8;ID=exon:HG003_chrY_T0001379:0;Name=TRAPPC2P8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18658879	18659322	.	-	.	source_transcript=ENST00000440676.1;source_transcript_name=TRAPPC2P8-201;source_gene=ENSG00000225895.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225895.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440676.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P8;transcript_id=HG003_chrY_T0001379;gene_id=HG003_chrY_G0000463;Parent=HG003_chrY_T0001379;transcript_name=HG003_chrY_T0001379;gene_name=TRAPPC2P8;ID=intron:HG003_chrY_T0001379:0;Name=TRAPPC2P8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18659323	18659469	.	-	.	source_transcript=ENST00000440676.1;source_transcript_name=TRAPPC2P8-201;source_gene=ENSG00000225895.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225895.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440676.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P8;transcript_id=HG003_chrY_T0001379;gene_id=HG003_chrY_G0000463;Parent=HG003_chrY_T0001379;transcript_name=HG003_chrY_T0001379;gene_name=TRAPPC2P8;ID=exon:HG003_chrY_T0001379:1;Name=TRAPPC2P8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18659470	18661418	.	-	.	source_transcript=ENST00000440676.1;source_transcript_name=TRAPPC2P8-201;source_gene=ENSG00000225895.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225895.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440676.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P8;transcript_id=HG003_chrY_T0001379;gene_id=HG003_chrY_G0000463;Parent=HG003_chrY_T0001379;transcript_name=HG003_chrY_T0001379;gene_name=TRAPPC2P8;ID=intron:HG003_chrY_T0001379:1;Name=TRAPPC2P8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18661419	18661511	.	-	.	source_transcript=ENST00000440676.1;source_transcript_name=TRAPPC2P8-201;source_gene=ENSG00000225895.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225895.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440676.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P8;transcript_id=HG003_chrY_T0001379;gene_id=HG003_chrY_G0000463;Parent=HG003_chrY_T0001379;transcript_name=HG003_chrY_T0001379;gene_name=TRAPPC2P8;ID=exon:HG003_chrY_T0001379:2;Name=TRAPPC2P8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18670622	18686145	.	+	.	source_gene_common_name=OFD1P1Y;source_gene=ENSG00000226011.1;gene_id=HG003_chrY_G0000464;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=OFD1P1Y;gene_sources=liftoff;ID=HG003_chrY_G0000464;Name=OFD1P1Y
HG003_chrY	CAT	transcript	18670622	18686145	1000	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_G0000464;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=HG003_chrY_T0001380;Name=OFD1P1Y
HG003_chrY	CAT	exon	18670622	18670721	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=exon:HG003_chrY_T0001380:0;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18670722	18671941	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=intron:HG003_chrY_T0001380:0;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18671942	18672142	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=exon:HG003_chrY_T0001380:1;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18672143	18674336	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=intron:HG003_chrY_T0001380:1;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18674337	18674404	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=exon:HG003_chrY_T0001380:2;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18674405	18674489	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=intron:HG003_chrY_T0001380:2;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18674490	18674520	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=exon:HG003_chrY_T0001380:3;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18674521	18676043	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=intron:HG003_chrY_T0001380:3;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18676044	18676180	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=exon:HG003_chrY_T0001380:4;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18676181	18676504	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=intron:HG003_chrY_T0001380:4;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18676505	18676651	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=exon:HG003_chrY_T0001380:5;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18676652	18679740	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=intron:HG003_chrY_T0001380:5;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18679741	18679846	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=exon:HG003_chrY_T0001380:6;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18679847	18681149	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=intron:HG003_chrY_T0001380:6;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18681150	18681269	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=exon:HG003_chrY_T0001380:7;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18681270	18683106	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=intron:HG003_chrY_T0001380:7;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18683107	18683180	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=exon:HG003_chrY_T0001380:8;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18683181	18684284	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=intron:HG003_chrY_T0001380:8;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18684285	18684376	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=exon:HG003_chrY_T0001380:9;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18684377	18685996	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=intron:HG003_chrY_T0001380:9;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18685997	18686145	.	+	.	source_transcript=ENST00000411756.1;source_transcript_name=OFD1P1Y-201;source_gene=ENSG00000226011.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226011.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411756.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411756.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P1Y;transcript_id=HG003_chrY_T0001380;gene_id=HG003_chrY_G0000464;Parent=HG003_chrY_T0001380;transcript_name=HG003_chrY_T0001380;gene_name=OFD1P1Y;ID=exon:HG003_chrY_T0001380:10;Name=OFD1P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18679251	18686143	.	+	.	source_gene_common_name=ENSG00000300757;source_gene=ENSG00000300757.1;gene_id=HG003_chrY_G0000465;gene_biotype=lncRNA;gene_name=ENSG00000300757;gene_sources=liftoff;ID=HG003_chrY_G0000465;Name=ENSG00000300757
HG003_chrY	CAT	transcript	18679251	18681345	1000	+	.	source_transcript=ENST00000773847.1;source_transcript_name=ENST00000773847;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773847.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773847.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001381;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_G0000465;transcript_name=HG003_chrY_T0001381;gene_name=ENSG00000300757;ID=HG003_chrY_T0001381;Name=ENSG00000300757
HG003_chrY	CAT	exon	18679251	18679334	.	+	.	source_transcript=ENST00000773847.1;source_transcript_name=ENST00000773847;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773847.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773847.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001381;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001381;transcript_name=HG003_chrY_T0001381;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001381:0;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18679335	18679437	.	+	.	source_transcript=ENST00000773847.1;source_transcript_name=ENST00000773847;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773847.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773847.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001381;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001381;transcript_name=HG003_chrY_T0001381;gene_name=ENSG00000300757;ID=intron:HG003_chrY_T0001381:0;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18679438	18679578	.	+	.	source_transcript=ENST00000773847.1;source_transcript_name=ENST00000773847;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773847.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773847.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001381;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001381;transcript_name=HG003_chrY_T0001381;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001381:1;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18679579	18681150	.	+	.	source_transcript=ENST00000773847.1;source_transcript_name=ENST00000773847;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773847.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773847.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001381;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001381;transcript_name=HG003_chrY_T0001381;gene_name=ENSG00000300757;ID=intron:HG003_chrY_T0001381:1;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18681151	18681345	.	+	.	source_transcript=ENST00000773847.1;source_transcript_name=ENST00000773847;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773847.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773847.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001381;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001381;transcript_name=HG003_chrY_T0001381;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001381:2;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18679459	18681342	1000	+	.	source_transcript=ENST00000773848.1;source_transcript_name=ENST00000773848;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773848.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773848.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001382;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_G0000465;transcript_name=HG003_chrY_T0001382;gene_name=ENSG00000300757;ID=HG003_chrY_T0001382;Name=ENSG00000300757
HG003_chrY	CAT	exon	18679459	18679578	.	+	.	source_transcript=ENST00000773848.1;source_transcript_name=ENST00000773848;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773848.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773848.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001382;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001382;transcript_name=HG003_chrY_T0001382;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001382:0;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18679579	18681150	.	+	.	source_transcript=ENST00000773848.1;source_transcript_name=ENST00000773848;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773848.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773848.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001382;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001382;transcript_name=HG003_chrY_T0001382;gene_name=ENSG00000300757;ID=intron:HG003_chrY_T0001382:0;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18681151	18681342	.	+	.	source_transcript=ENST00000773848.1;source_transcript_name=ENST00000773848;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773848.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773848.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001382;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001382;transcript_name=HG003_chrY_T0001382;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001382:1;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18680761	18686143	1000	+	.	source_transcript=ENST00000773845.1;source_transcript_name=ENST00000773845;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773845.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001383;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_G0000465;transcript_name=HG003_chrY_T0001383;gene_name=ENSG00000300757;ID=HG003_chrY_T0001383;Name=ENSG00000300757
HG003_chrY	CAT	exon	18680761	18680878	.	+	.	source_transcript=ENST00000773845.1;source_transcript_name=ENST00000773845;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001383;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001383;transcript_name=HG003_chrY_T0001383;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001383:0;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18680879	18681150	.	+	.	source_transcript=ENST00000773845.1;source_transcript_name=ENST00000773845;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001383;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001383;transcript_name=HG003_chrY_T0001383;gene_name=ENSG00000300757;ID=intron:HG003_chrY_T0001383:0;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18681151	18681294	.	+	.	source_transcript=ENST00000773845.1;source_transcript_name=ENST00000773845;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001383;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001383;transcript_name=HG003_chrY_T0001383;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001383:1;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18681295	18683106	.	+	.	source_transcript=ENST00000773845.1;source_transcript_name=ENST00000773845;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001383;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001383;transcript_name=HG003_chrY_T0001383;gene_name=ENSG00000300757;ID=intron:HG003_chrY_T0001383:1;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18683107	18683180	.	+	.	source_transcript=ENST00000773845.1;source_transcript_name=ENST00000773845;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001383;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001383;transcript_name=HG003_chrY_T0001383;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001383:2;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18683181	18685996	.	+	.	source_transcript=ENST00000773845.1;source_transcript_name=ENST00000773845;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001383;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001383;transcript_name=HG003_chrY_T0001383;gene_name=ENSG00000300757;ID=intron:HG003_chrY_T0001383:2;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18685997	18686143	.	+	.	source_transcript=ENST00000773845.1;source_transcript_name=ENST00000773845;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773845.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773845.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001383;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001383;transcript_name=HG003_chrY_T0001383;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001383:3;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18680766	18686036	1000	+	.	source_transcript=ENST00000773846.1;source_transcript_name=ENST00000773846;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773846.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773846.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001384;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_G0000465;transcript_name=HG003_chrY_T0001384;gene_name=ENSG00000300757;ID=HG003_chrY_T0001384;Name=ENSG00000300757
HG003_chrY	CAT	exon	18680766	18680878	.	+	.	source_transcript=ENST00000773846.1;source_transcript_name=ENST00000773846;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773846.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773846.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001384;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001384;transcript_name=HG003_chrY_T0001384;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001384:0;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18680879	18681150	.	+	.	source_transcript=ENST00000773846.1;source_transcript_name=ENST00000773846;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773846.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773846.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001384;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001384;transcript_name=HG003_chrY_T0001384;gene_name=ENSG00000300757;ID=intron:HG003_chrY_T0001384:0;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18681151	18681269	.	+	.	source_transcript=ENST00000773846.1;source_transcript_name=ENST00000773846;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773846.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773846.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001384;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001384;transcript_name=HG003_chrY_T0001384;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001384:1;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18681270	18682663	.	+	.	source_transcript=ENST00000773846.1;source_transcript_name=ENST00000773846;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773846.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773846.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001384;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001384;transcript_name=HG003_chrY_T0001384;gene_name=ENSG00000300757;ID=intron:HG003_chrY_T0001384:1;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18682664	18682739	.	+	.	source_transcript=ENST00000773846.1;source_transcript_name=ENST00000773846;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773846.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773846.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001384;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001384;transcript_name=HG003_chrY_T0001384;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001384:2;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18682740	18683106	.	+	.	source_transcript=ENST00000773846.1;source_transcript_name=ENST00000773846;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773846.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773846.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001384;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001384;transcript_name=HG003_chrY_T0001384;gene_name=ENSG00000300757;ID=intron:HG003_chrY_T0001384:2;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18683107	18683180	.	+	.	source_transcript=ENST00000773846.1;source_transcript_name=ENST00000773846;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773846.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773846.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001384;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001384;transcript_name=HG003_chrY_T0001384;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001384:3;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18683181	18685996	.	+	.	source_transcript=ENST00000773846.1;source_transcript_name=ENST00000773846;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773846.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773846.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001384;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001384;transcript_name=HG003_chrY_T0001384;gene_name=ENSG00000300757;ID=intron:HG003_chrY_T0001384:3;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18685997	18686036	.	+	.	source_transcript=ENST00000773846.1;source_transcript_name=ENST00000773846;source_gene=ENSG00000300757.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300757.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773846.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773846.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300757;transcript_id=HG003_chrY_T0001384;gene_id=HG003_chrY_G0000465;Parent=HG003_chrY_T0001384;transcript_name=HG003_chrY_T0001384;gene_name=ENSG00000300757;ID=exon:HG003_chrY_T0001384:4;Name=ENSG00000300757;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18698026	18698353	.	-	.	source_gene_common_name=ELOCP6;source_gene=ENSG00000225740.1;alternative_source_transcripts=ENST00000429066.1;gene_id=HG003_chrY_G0000466;gene_biotype=processed_pseudogene;gene_name=ELOCP6;gene_sources=liftoff;ID=HG003_chrY_G0000466;Name=ELOCP6
HG003_chrY	CAT	transcript	18698026	18698353	1000	-	.	source_transcript=ENST00000429066.1;source_transcript_name=ELOCP6-201;source_gene=ENSG00000225740.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000225740.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000429066.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429066.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP6;alternative_source_transcripts=ENST00000429066.1;transcript_id=HG003_chrY_T0001385;gene_id=HG003_chrY_G0000466;Parent=HG003_chrY_G0000466;transcript_name=HG003_chrY_T0001385;gene_name=ELOCP6;ID=HG003_chrY_T0001385;Name=ELOCP6
HG003_chrY	CAT	exon	18698026	18698353	.	-	.	source_transcript=ENST00000429066.1;source_transcript_name=ELOCP6-201;source_gene=ENSG00000225740.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000225740.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000429066.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429066.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP6;alternative_source_transcripts=ENST00000429066.1;transcript_id=HG003_chrY_T0001385;gene_id=HG003_chrY_G0000466;Parent=HG003_chrY_T0001385;transcript_name=HG003_chrY_T0001385;gene_name=ELOCP6;ID=exon:HG003_chrY_T0001385:0;Name=ELOCP6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18739085	18741045	.	-	.	source_gene_common_name=CDY2B;source_gene=ENSG00000129873.8;alternative_source_transcripts=ENST00000382867.4;gene_id=HG003_chrY_G0000467;gene_biotype=protein_coding;gene_name=CDY2B;gene_sources=liftoff;ID=HG003_chrY_G0000467;Name=CDY2B
HG003_chrY	CAT	transcript	18739085	18741045	100	-	.	source_transcript=ENST00000382867.4;source_transcript_name=CDY2B-201;source_gene=ENSG00000129873.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129873.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382867.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382867.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=ENST00000382867.4;transcript_id=HG003_chrY_T0001386;gene_id=HG003_chrY_G0000467;Parent=HG003_chrY_G0000467;transcript_name=HG003_chrY_T0001386;gene_name=CDY2B;ID=HG003_chrY_T0001386;Name=CDY2B
HG003_chrY	CAT	exon	18739085	18741045	.	-	.	source_transcript=ENST00000382867.4;source_transcript_name=CDY2B-201;source_gene=ENSG00000129873.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129873.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382867.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382867.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=ENST00000382867.4;transcript_id=HG003_chrY_T0001386;gene_id=HG003_chrY_G0000467;Parent=HG003_chrY_T0001386;transcript_name=HG003_chrY_T0001386;gene_name=CDY2B;ID=exon:HG003_chrY_T0001386:0;Name=CDY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	18739092	18740717	.	-	0	source_transcript=ENST00000382867.4;source_transcript_name=CDY2B-201;source_gene=ENSG00000129873.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129873.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382867.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382867.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=ENST00000382867.4;transcript_id=HG003_chrY_T0001386;gene_id=HG003_chrY_G0000467;Parent=HG003_chrY_T0001386;transcript_name=HG003_chrY_T0001386;gene_name=CDY2B;ID=CDS:HG003_chrY_T0001386:0;Name=CDY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	18739092	18739094	.	-	0	source_transcript=ENST00000382867.4;source_transcript_name=CDY2B-201;source_gene=ENSG00000129873.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129873.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382867.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382867.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=ENST00000382867.4;transcript_id=HG003_chrY_T0001386;gene_id=HG003_chrY_G0000467;Parent=HG003_chrY_T0001386;transcript_name=HG003_chrY_T0001386;gene_name=CDY2B;ID=stop_codon:HG003_chrY_T0001386;Name=CDY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	18740715	18740717	.	-	0	source_transcript=ENST00000382867.4;source_transcript_name=CDY2B-201;source_gene=ENSG00000129873.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000129873.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382867.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382867.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2B;alternative_source_transcripts=ENST00000382867.4;transcript_id=HG003_chrY_T0001386;gene_id=HG003_chrY_G0000467;Parent=HG003_chrY_T0001386;transcript_name=HG003_chrY_T0001386;gene_name=CDY2B;ID=start_codon:HG003_chrY_T0001386;Name=CDY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18742924	18744530	.	-	.	source_gene_common_name=CDY6P;source_gene=ENSG00000229138.1;alternative_source_transcripts=ENST00000413320.1;gene_id=HG003_chrY_G0000468;gene_biotype=unprocessed_pseudogene;gene_name=CDY6P;gene_sources=liftoff;ID=HG003_chrY_G0000468;Name=CDY6P
HG003_chrY	CAT	transcript	18742924	18744530	1000	-	.	source_transcript=ENST00000413320.1;source_transcript_name=CDY6P-201;source_gene=ENSG00000229138.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229138.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413320.1;transcript_score=299.921;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY6P;alternative_source_transcripts=ENST00000413320.1;transcript_id=HG003_chrY_T0001387;gene_id=HG003_chrY_G0000468;Parent=HG003_chrY_G0000468;transcript_name=HG003_chrY_T0001387;gene_name=CDY6P;ID=HG003_chrY_T0001387;Name=CDY6P
HG003_chrY	CAT	exon	18742924	18744123	.	-	.	source_transcript=ENST00000413320.1;source_transcript_name=CDY6P-201;source_gene=ENSG00000229138.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229138.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413320.1;transcript_score=299.921;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY6P;alternative_source_transcripts=ENST00000413320.1;transcript_id=HG003_chrY_T0001387;gene_id=HG003_chrY_G0000468;Parent=HG003_chrY_T0001387;transcript_name=HG003_chrY_T0001387;gene_name=CDY6P;ID=exon:HG003_chrY_T0001387:0;Name=CDY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18744124	18744464	.	-	.	source_transcript=ENST00000413320.1;source_transcript_name=CDY6P-201;source_gene=ENSG00000229138.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229138.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413320.1;transcript_score=299.921;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY6P;alternative_source_transcripts=ENST00000413320.1;transcript_id=HG003_chrY_T0001387;gene_id=HG003_chrY_G0000468;Parent=HG003_chrY_T0001387;transcript_name=HG003_chrY_T0001387;gene_name=CDY6P;ID=intron:HG003_chrY_T0001387:0;Name=CDY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18744465	18744530	.	-	.	source_transcript=ENST00000413320.1;source_transcript_name=CDY6P-201;source_gene=ENSG00000229138.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229138.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413320.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413320.1;transcript_score=299.921;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY6P;alternative_source_transcripts=ENST00000413320.1;transcript_id=HG003_chrY_T0001387;gene_id=HG003_chrY_G0000468;Parent=HG003_chrY_T0001387;transcript_name=HG003_chrY_T0001387;gene_name=CDY6P;ID=exon:HG003_chrY_T0001387:1;Name=CDY6P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18769576	18771624	.	+	.	source_gene_common_name=USP9YP7;source_gene=ENSG00000224485.1;alternative_source_transcripts=ENST00000436723.1;gene_id=HG003_chrY_G0000469;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP7;gene_sources=liftoff;ID=HG003_chrY_G0000469;Name=USP9YP7
HG003_chrY	CAT	transcript	18769576	18771624	1000	+	.	source_transcript=ENST00000436723.1;source_transcript_name=USP9YP7-201;source_gene=ENSG00000224485.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224485.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000436723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436723.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP7;alternative_source_transcripts=ENST00000436723.1;transcript_id=HG003_chrY_T0001388;gene_id=HG003_chrY_G0000469;Parent=HG003_chrY_G0000469;transcript_name=HG003_chrY_T0001388;gene_name=USP9YP7;ID=HG003_chrY_T0001388;Name=USP9YP7
HG003_chrY	CAT	exon	18769576	18769796	.	+	.	source_transcript=ENST00000436723.1;source_transcript_name=USP9YP7-201;source_gene=ENSG00000224485.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224485.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000436723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436723.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP7;alternative_source_transcripts=ENST00000436723.1;transcript_id=HG003_chrY_T0001388;gene_id=HG003_chrY_G0000469;Parent=HG003_chrY_T0001388;transcript_name=HG003_chrY_T0001388;gene_name=USP9YP7;ID=exon:HG003_chrY_T0001388:0;Name=USP9YP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18769797	18771415	.	+	.	source_transcript=ENST00000436723.1;source_transcript_name=USP9YP7-201;source_gene=ENSG00000224485.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224485.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000436723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436723.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP7;alternative_source_transcripts=ENST00000436723.1;transcript_id=HG003_chrY_T0001388;gene_id=HG003_chrY_G0000469;Parent=HG003_chrY_T0001388;transcript_name=HG003_chrY_T0001388;gene_name=USP9YP7;ID=intron:HG003_chrY_T0001388:0;Name=USP9YP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18771416	18771624	.	+	.	source_transcript=ENST00000436723.1;source_transcript_name=USP9YP7-201;source_gene=ENSG00000224485.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224485.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000436723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436723.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP7;alternative_source_transcripts=ENST00000436723.1;transcript_id=HG003_chrY_T0001388;gene_id=HG003_chrY_G0000469;Parent=HG003_chrY_T0001388;transcript_name=HG003_chrY_T0001388;gene_name=USP9YP7;ID=exon:HG003_chrY_T0001388:1;Name=USP9YP7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18773525	18782461	.	-	.	source_gene_common_name=USP9YP6;source_gene=ENSG00000226116.1;alternative_source_transcripts=ENST00000413550.1;gene_id=HG003_chrY_G0000470;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP6;gene_sources=liftoff;ID=HG003_chrY_G0000470;Name=USP9YP6
HG003_chrY	CAT	transcript	18773525	18782461	1000	-	.	source_transcript=ENST00000413550.1;source_transcript_name=USP9YP6-201;source_gene=ENSG00000226116.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226116.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413550.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP6;alternative_source_transcripts=ENST00000413550.1;transcript_id=HG003_chrY_T0001389;gene_id=HG003_chrY_G0000470;Parent=HG003_chrY_G0000470;transcript_name=HG003_chrY_T0001389;gene_name=USP9YP6;ID=HG003_chrY_T0001389;Name=USP9YP6
HG003_chrY	CAT	exon	18773525	18773649	.	-	.	source_transcript=ENST00000413550.1;source_transcript_name=USP9YP6-201;source_gene=ENSG00000226116.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226116.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413550.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP6;alternative_source_transcripts=ENST00000413550.1;transcript_id=HG003_chrY_T0001389;gene_id=HG003_chrY_G0000470;Parent=HG003_chrY_T0001389;transcript_name=HG003_chrY_T0001389;gene_name=USP9YP6;ID=exon:HG003_chrY_T0001389:0;Name=USP9YP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18773650	18775783	.	-	.	source_transcript=ENST00000413550.1;source_transcript_name=USP9YP6-201;source_gene=ENSG00000226116.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226116.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413550.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP6;alternative_source_transcripts=ENST00000413550.1;transcript_id=HG003_chrY_T0001389;gene_id=HG003_chrY_G0000470;Parent=HG003_chrY_T0001389;transcript_name=HG003_chrY_T0001389;gene_name=USP9YP6;ID=intron:HG003_chrY_T0001389:0;Name=USP9YP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18775784	18775868	.	-	.	source_transcript=ENST00000413550.1;source_transcript_name=USP9YP6-201;source_gene=ENSG00000226116.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226116.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413550.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP6;alternative_source_transcripts=ENST00000413550.1;transcript_id=HG003_chrY_T0001389;gene_id=HG003_chrY_G0000470;Parent=HG003_chrY_T0001389;transcript_name=HG003_chrY_T0001389;gene_name=USP9YP6;ID=exon:HG003_chrY_T0001389:1;Name=USP9YP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18775869	18777854	.	-	.	source_transcript=ENST00000413550.1;source_transcript_name=USP9YP6-201;source_gene=ENSG00000226116.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226116.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413550.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP6;alternative_source_transcripts=ENST00000413550.1;transcript_id=HG003_chrY_T0001389;gene_id=HG003_chrY_G0000470;Parent=HG003_chrY_T0001389;transcript_name=HG003_chrY_T0001389;gene_name=USP9YP6;ID=intron:HG003_chrY_T0001389:1;Name=USP9YP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18777855	18778055	.	-	.	source_transcript=ENST00000413550.1;source_transcript_name=USP9YP6-201;source_gene=ENSG00000226116.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226116.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413550.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP6;alternative_source_transcripts=ENST00000413550.1;transcript_id=HG003_chrY_T0001389;gene_id=HG003_chrY_G0000470;Parent=HG003_chrY_T0001389;transcript_name=HG003_chrY_T0001389;gene_name=USP9YP6;ID=exon:HG003_chrY_T0001389:2;Name=USP9YP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18778056	18779855	.	-	.	source_transcript=ENST00000413550.1;source_transcript_name=USP9YP6-201;source_gene=ENSG00000226116.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226116.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413550.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP6;alternative_source_transcripts=ENST00000413550.1;transcript_id=HG003_chrY_T0001389;gene_id=HG003_chrY_G0000470;Parent=HG003_chrY_T0001389;transcript_name=HG003_chrY_T0001389;gene_name=USP9YP6;ID=intron:HG003_chrY_T0001389:2;Name=USP9YP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18779856	18780076	.	-	.	source_transcript=ENST00000413550.1;source_transcript_name=USP9YP6-201;source_gene=ENSG00000226116.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226116.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413550.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP6;alternative_source_transcripts=ENST00000413550.1;transcript_id=HG003_chrY_T0001389;gene_id=HG003_chrY_G0000470;Parent=HG003_chrY_T0001389;transcript_name=HG003_chrY_T0001389;gene_name=USP9YP6;ID=exon:HG003_chrY_T0001389:3;Name=USP9YP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18780077	18782239	.	-	.	source_transcript=ENST00000413550.1;source_transcript_name=USP9YP6-201;source_gene=ENSG00000226116.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226116.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413550.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP6;alternative_source_transcripts=ENST00000413550.1;transcript_id=HG003_chrY_T0001389;gene_id=HG003_chrY_G0000470;Parent=HG003_chrY_T0001389;transcript_name=HG003_chrY_T0001389;gene_name=USP9YP6;ID=intron:HG003_chrY_T0001389:3;Name=USP9YP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18782240	18782461	.	-	.	source_transcript=ENST00000413550.1;source_transcript_name=USP9YP6-201;source_gene=ENSG00000226116.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226116.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413550.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP6;alternative_source_transcripts=ENST00000413550.1;transcript_id=HG003_chrY_T0001389;gene_id=HG003_chrY_G0000470;Parent=HG003_chrY_T0001389;transcript_name=HG003_chrY_T0001389;gene_name=USP9YP6;ID=exon:HG003_chrY_T0001389:4;Name=USP9YP6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18813261	18815172	.	-	.	source_gene_common_name=CDY7P;source_gene=ENSG00000237558.1;alternative_source_transcripts=ENST00000429883.1,ENST00000429883.1;gene_id=HG003_chrY_G0000471;gene_biotype=unprocessed_pseudogene;gene_name=CDY7P;gene_sources=liftoff;ID=HG003_chrY_G0000471;Name=CDY7P
HG003_chrY	CAT	transcript	18813261	18815172	1000	-	.	source_transcript=ENST00000429883.1;source_transcript_name=CDY7P-201;source_gene=ENSG00000237558.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237558.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429883.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429883.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY7P;alternative_source_transcripts=ENST00000429883.1,ENST00000429883.1;transcript_id=HG003_chrY_T0001390;gene_id=HG003_chrY_G0000471;Parent=HG003_chrY_G0000471;transcript_name=HG003_chrY_T0001390;gene_name=CDY7P;ID=HG003_chrY_T0001390;Name=CDY7P
HG003_chrY	CAT	exon	18813261	18814699	.	-	.	source_transcript=ENST00000429883.1;source_transcript_name=CDY7P-201;source_gene=ENSG00000237558.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237558.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429883.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429883.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY7P;alternative_source_transcripts=ENST00000429883.1,ENST00000429883.1;transcript_id=HG003_chrY_T0001390;gene_id=HG003_chrY_G0000471;Parent=HG003_chrY_T0001390;transcript_name=HG003_chrY_T0001390;gene_name=CDY7P;ID=exon:HG003_chrY_T0001390:0;Name=CDY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18814700	18815007	.	-	.	source_transcript=ENST00000429883.1;source_transcript_name=CDY7P-201;source_gene=ENSG00000237558.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237558.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429883.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429883.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY7P;alternative_source_transcripts=ENST00000429883.1,ENST00000429883.1;transcript_id=HG003_chrY_T0001390;gene_id=HG003_chrY_G0000471;Parent=HG003_chrY_T0001390;transcript_name=HG003_chrY_T0001390;gene_name=CDY7P;ID=intron:HG003_chrY_T0001390:0;Name=CDY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18815008	18815172	.	-	.	source_transcript=ENST00000429883.1;source_transcript_name=CDY7P-201;source_gene=ENSG00000237558.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237558.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429883.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429883.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY7P;alternative_source_transcripts=ENST00000429883.1,ENST00000429883.1;transcript_id=HG003_chrY_T0001390;gene_id=HG003_chrY_G0000471;Parent=HG003_chrY_T0001390;transcript_name=HG003_chrY_T0001390;gene_name=CDY7P;ID=exon:HG003_chrY_T0001390:1;Name=CDY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18845088	18854003	.	+	.	source_gene_common_name=USP9YP34;source_gene=ENSG00000233378.1;alternative_source_transcripts=ENST00000453983.1;gene_id=HG003_chrY_G0000472;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP34;gene_sources=liftoff;ID=HG003_chrY_G0000472;Name=USP9YP34
HG003_chrY	CAT	transcript	18845088	18854003	1000	+	.	source_transcript=ENST00000453983.1;source_transcript_name=USP9YP34-201;source_gene=ENSG00000233378.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233378.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453983.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP34;alternative_source_transcripts=ENST00000453983.1;transcript_id=HG003_chrY_T0001391;gene_id=HG003_chrY_G0000472;Parent=HG003_chrY_G0000472;transcript_name=HG003_chrY_T0001391;gene_name=USP9YP34;ID=HG003_chrY_T0001391;Name=USP9YP34
HG003_chrY	CAT	exon	18845088	18845308	.	+	.	source_transcript=ENST00000453983.1;source_transcript_name=USP9YP34-201;source_gene=ENSG00000233378.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233378.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453983.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP34;alternative_source_transcripts=ENST00000453983.1;transcript_id=HG003_chrY_T0001391;gene_id=HG003_chrY_G0000472;Parent=HG003_chrY_T0001391;transcript_name=HG003_chrY_T0001391;gene_name=USP9YP34;ID=exon:HG003_chrY_T0001391:0;Name=USP9YP34;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18845309	18847475	.	+	.	source_transcript=ENST00000453983.1;source_transcript_name=USP9YP34-201;source_gene=ENSG00000233378.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233378.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453983.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP34;alternative_source_transcripts=ENST00000453983.1;transcript_id=HG003_chrY_T0001391;gene_id=HG003_chrY_G0000472;Parent=HG003_chrY_T0001391;transcript_name=HG003_chrY_T0001391;gene_name=USP9YP34;ID=intron:HG003_chrY_T0001391:0;Name=USP9YP34;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18847476	18847694	.	+	.	source_transcript=ENST00000453983.1;source_transcript_name=USP9YP34-201;source_gene=ENSG00000233378.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233378.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453983.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP34;alternative_source_transcripts=ENST00000453983.1;transcript_id=HG003_chrY_T0001391;gene_id=HG003_chrY_G0000472;Parent=HG003_chrY_T0001391;transcript_name=HG003_chrY_T0001391;gene_name=USP9YP34;ID=exon:HG003_chrY_T0001391:1;Name=USP9YP34;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18847695	18849494	.	+	.	source_transcript=ENST00000453983.1;source_transcript_name=USP9YP34-201;source_gene=ENSG00000233378.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233378.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453983.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP34;alternative_source_transcripts=ENST00000453983.1;transcript_id=HG003_chrY_T0001391;gene_id=HG003_chrY_G0000472;Parent=HG003_chrY_T0001391;transcript_name=HG003_chrY_T0001391;gene_name=USP9YP34;ID=intron:HG003_chrY_T0001391:1;Name=USP9YP34;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18849495	18849684	.	+	.	source_transcript=ENST00000453983.1;source_transcript_name=USP9YP34-201;source_gene=ENSG00000233378.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233378.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453983.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP34;alternative_source_transcripts=ENST00000453983.1;transcript_id=HG003_chrY_T0001391;gene_id=HG003_chrY_G0000472;Parent=HG003_chrY_T0001391;transcript_name=HG003_chrY_T0001391;gene_name=USP9YP34;ID=exon:HG003_chrY_T0001391:2;Name=USP9YP34;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18849685	18851679	.	+	.	source_transcript=ENST00000453983.1;source_transcript_name=USP9YP34-201;source_gene=ENSG00000233378.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233378.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453983.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP34;alternative_source_transcripts=ENST00000453983.1;transcript_id=HG003_chrY_T0001391;gene_id=HG003_chrY_G0000472;Parent=HG003_chrY_T0001391;transcript_name=HG003_chrY_T0001391;gene_name=USP9YP34;ID=intron:HG003_chrY_T0001391:2;Name=USP9YP34;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18851680	18851764	.	+	.	source_transcript=ENST00000453983.1;source_transcript_name=USP9YP34-201;source_gene=ENSG00000233378.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233378.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453983.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP34;alternative_source_transcripts=ENST00000453983.1;transcript_id=HG003_chrY_T0001391;gene_id=HG003_chrY_G0000472;Parent=HG003_chrY_T0001391;transcript_name=HG003_chrY_T0001391;gene_name=USP9YP34;ID=exon:HG003_chrY_T0001391:3;Name=USP9YP34;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18851765	18853910	.	+	.	source_transcript=ENST00000453983.1;source_transcript_name=USP9YP34-201;source_gene=ENSG00000233378.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233378.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453983.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP34;alternative_source_transcripts=ENST00000453983.1;transcript_id=HG003_chrY_T0001391;gene_id=HG003_chrY_G0000472;Parent=HG003_chrY_T0001391;transcript_name=HG003_chrY_T0001391;gene_name=USP9YP34;ID=intron:HG003_chrY_T0001391:3;Name=USP9YP34;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18853911	18854003	.	+	.	source_transcript=ENST00000453983.1;source_transcript_name=USP9YP34-201;source_gene=ENSG00000233378.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233378.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453983.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP34;alternative_source_transcripts=ENST00000453983.1;transcript_id=HG003_chrY_T0001391;gene_id=HG003_chrY_G0000472;Parent=HG003_chrY_T0001391;transcript_name=HG003_chrY_T0001391;gene_name=USP9YP34;ID=exon:HG003_chrY_T0001391:4;Name=USP9YP34;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18855944	18857992	.	-	.	source_gene_common_name=USP9YP32;source_gene=ENSG00000237616.1;alternative_source_transcripts=ENST00000452432.1;gene_id=HG003_chrY_G0000473;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP32;gene_sources=liftoff;ID=HG003_chrY_G0000473;Name=USP9YP32
HG003_chrY	CAT	transcript	18855944	18857992	1000	-	.	source_transcript=ENST00000452432.1;source_transcript_name=USP9YP32-201;source_gene=ENSG00000237616.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237616.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452432.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP32;alternative_source_transcripts=ENST00000452432.1;transcript_id=HG003_chrY_T0001392;gene_id=HG003_chrY_G0000473;Parent=HG003_chrY_G0000473;transcript_name=HG003_chrY_T0001392;gene_name=USP9YP32;ID=HG003_chrY_T0001392;Name=USP9YP32
HG003_chrY	CAT	exon	18855944	18856152	.	-	.	source_transcript=ENST00000452432.1;source_transcript_name=USP9YP32-201;source_gene=ENSG00000237616.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237616.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP32;alternative_source_transcripts=ENST00000452432.1;transcript_id=HG003_chrY_T0001392;gene_id=HG003_chrY_G0000473;Parent=HG003_chrY_T0001392;transcript_name=HG003_chrY_T0001392;gene_name=USP9YP32;ID=exon:HG003_chrY_T0001392:0;Name=USP9YP32;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18856153	18857771	.	-	.	source_transcript=ENST00000452432.1;source_transcript_name=USP9YP32-201;source_gene=ENSG00000237616.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237616.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP32;alternative_source_transcripts=ENST00000452432.1;transcript_id=HG003_chrY_T0001392;gene_id=HG003_chrY_G0000473;Parent=HG003_chrY_T0001392;transcript_name=HG003_chrY_T0001392;gene_name=USP9YP32;ID=intron:HG003_chrY_T0001392:0;Name=USP9YP32;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18857772	18857992	.	-	.	source_transcript=ENST00000452432.1;source_transcript_name=USP9YP32-201;source_gene=ENSG00000237616.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237616.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452432.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP32;alternative_source_transcripts=ENST00000452432.1;transcript_id=HG003_chrY_T0001392;gene_id=HG003_chrY_G0000473;Parent=HG003_chrY_T0001392;transcript_name=HG003_chrY_T0001392;gene_name=USP9YP32;ID=exon:HG003_chrY_T0001392:1;Name=USP9YP32;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18883038	18884644	.	+	.	source_gene_common_name=CDY8P;source_gene=ENSG00000224033.1;alternative_source_transcripts=ENST00000428380.1;gene_id=HG003_chrY_G0000474;gene_biotype=unprocessed_pseudogene;gene_name=CDY8P;gene_sources=liftoff;ID=HG003_chrY_G0000474;Name=CDY8P
HG003_chrY	CAT	transcript	18883038	18884644	1000	+	.	source_transcript=ENST00000428380.1;source_transcript_name=CDY8P-201;source_gene=ENSG00000224033.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224033.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000428380.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428380.1;transcript_score=299.922;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY8P;alternative_source_transcripts=ENST00000428380.1;transcript_id=HG003_chrY_T0001393;gene_id=HG003_chrY_G0000474;Parent=HG003_chrY_G0000474;transcript_name=HG003_chrY_T0001393;gene_name=CDY8P;ID=HG003_chrY_T0001393;Name=CDY8P
HG003_chrY	CAT	exon	18883038	18883103	.	+	.	source_transcript=ENST00000428380.1;source_transcript_name=CDY8P-201;source_gene=ENSG00000224033.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224033.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000428380.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428380.1;transcript_score=299.922;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY8P;alternative_source_transcripts=ENST00000428380.1;transcript_id=HG003_chrY_T0001393;gene_id=HG003_chrY_G0000474;Parent=HG003_chrY_T0001393;transcript_name=HG003_chrY_T0001393;gene_name=CDY8P;ID=exon:HG003_chrY_T0001393:0;Name=CDY8P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18883104	18883431	.	+	.	source_transcript=ENST00000428380.1;source_transcript_name=CDY8P-201;source_gene=ENSG00000224033.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224033.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000428380.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428380.1;transcript_score=299.922;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY8P;alternative_source_transcripts=ENST00000428380.1;transcript_id=HG003_chrY_T0001393;gene_id=HG003_chrY_G0000474;Parent=HG003_chrY_T0001393;transcript_name=HG003_chrY_T0001393;gene_name=CDY8P;ID=intron:HG003_chrY_T0001393:0;Name=CDY8P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18883432	18884644	.	+	.	source_transcript=ENST00000428380.1;source_transcript_name=CDY8P-201;source_gene=ENSG00000224033.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224033.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000428380.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428380.1;transcript_score=299.922;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY8P;alternative_source_transcripts=ENST00000428380.1;transcript_id=HG003_chrY_T0001393;gene_id=HG003_chrY_G0000474;Parent=HG003_chrY_T0001393;transcript_name=HG003_chrY_T0001393;gene_name=CDY8P;ID=exon:HG003_chrY_T0001393:1;Name=CDY8P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18886523	18888482	.	+	.	source_gene_common_name=CDY2A;source_gene=ENSG00000182415.11;alternative_source_transcripts=ENST00000250838.6;gene_id=HG003_chrY_G0000475;gene_biotype=protein_coding;gene_name=CDY2A;gene_sources=liftoff;ID=HG003_chrY_G0000475;Name=CDY2A
HG003_chrY	CAT	transcript	18886523	18888482	100	+	.	source_transcript=ENST00000250838.6;source_transcript_name=CDY2A-201;source_gene=ENSG00000182415.11;source_gene_biotype=protein_coding;original_gene_id=ENSG00000182415.11;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250838.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250838.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=ENST00000250838.6;transcript_id=HG003_chrY_T0001394;gene_id=HG003_chrY_G0000475;Parent=HG003_chrY_G0000475;transcript_name=HG003_chrY_T0001394;gene_name=CDY2A;ID=HG003_chrY_T0001394;Name=CDY2A
HG003_chrY	CAT	exon	18886523	18888482	.	+	.	source_transcript=ENST00000250838.6;source_transcript_name=CDY2A-201;source_gene=ENSG00000182415.11;source_gene_biotype=protein_coding;original_gene_id=ENSG00000182415.11;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250838.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250838.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=ENST00000250838.6;transcript_id=HG003_chrY_T0001394;gene_id=HG003_chrY_G0000475;Parent=HG003_chrY_T0001394;transcript_name=HG003_chrY_T0001394;gene_name=CDY2A;ID=exon:HG003_chrY_T0001394:0;Name=CDY2A;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	18886851	18888476	.	+	0	source_transcript=ENST00000250838.6;source_transcript_name=CDY2A-201;source_gene=ENSG00000182415.11;source_gene_biotype=protein_coding;original_gene_id=ENSG00000182415.11;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250838.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250838.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=ENST00000250838.6;transcript_id=HG003_chrY_T0001394;gene_id=HG003_chrY_G0000475;Parent=HG003_chrY_T0001394;transcript_name=HG003_chrY_T0001394;gene_name=CDY2A;ID=CDS:HG003_chrY_T0001394:0;Name=CDY2A;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	18886851	18886853	.	+	0	source_transcript=ENST00000250838.6;source_transcript_name=CDY2A-201;source_gene=ENSG00000182415.11;source_gene_biotype=protein_coding;original_gene_id=ENSG00000182415.11;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250838.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250838.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=ENST00000250838.6;transcript_id=HG003_chrY_T0001394;gene_id=HG003_chrY_G0000475;Parent=HG003_chrY_T0001394;transcript_name=HG003_chrY_T0001394;gene_name=CDY2A;ID=start_codon:HG003_chrY_T0001394;Name=CDY2A;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	18888474	18888476	.	+	0	source_transcript=ENST00000250838.6;source_transcript_name=CDY2A-201;source_gene=ENSG00000182415.11;source_gene_biotype=protein_coding;original_gene_id=ENSG00000182415.11;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250838.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250838.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY2A;alternative_source_transcripts=ENST00000250838.6;transcript_id=HG003_chrY_T0001394;gene_id=HG003_chrY_G0000475;Parent=HG003_chrY_T0001394;transcript_name=HG003_chrY_T0001394;gene_name=CDY2A;ID=stop_codon:HG003_chrY_T0001394;Name=CDY2A;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18917500	18948863	.	-	.	source_gene_common_name=ENSG00000297434;source_gene=ENSG00000297434.1;gene_id=HG003_chrY_G0000476;gene_biotype=lncRNA;gene_name=ENSG00000297434;gene_sources=liftoff;ID=HG003_chrY_G0000476;Name=ENSG00000297434
HG003_chrY	CAT	transcript	18917500	18948863	1000	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_G0000476;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=HG003_chrY_T0001395;Name=ENSG00000297434
HG003_chrY	CAT	exon	18917500	18917618	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001395:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18917619	18921078	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001395:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18921079	18921334	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001395:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18921335	18934255	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001395:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18934256	18934468	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001395:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18934469	18939913	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001395:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18939914	18940053	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001395:3;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18940054	18941364	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001395:3;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18941365	18941562	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001395:4;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18941563	18944377	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001395:4;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18944378	18944451	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001395:5;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18944452	18946299	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001395:5;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18946300	18946407	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001395:6;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18946408	18947980	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001395:6;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18947981	18948115	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001395:7;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18948116	18948830	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001395:7;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18948831	18948863	.	-	.	source_transcript=ENST00000747888.1;source_transcript_name=ENST00000747888;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747888.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747888.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001395;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001395;transcript_name=HG003_chrY_T0001395;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001395:8;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18939991	18948755	1000	-	.	source_transcript=ENST00000747889.1;source_transcript_name=ENST00000747889;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747889.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001397;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_G0000476;transcript_name=HG003_chrY_T0001397;gene_name=ENSG00000297434;ID=HG003_chrY_T0001397;Name=ENSG00000297434
HG003_chrY	CAT	exon	18939991	18940053	.	-	.	source_transcript=ENST00000747889.1;source_transcript_name=ENST00000747889;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001397;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001397;transcript_name=HG003_chrY_T0001397;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001397:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18940054	18941360	.	-	.	source_transcript=ENST00000747889.1;source_transcript_name=ENST00000747889;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001397;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001397;transcript_name=HG003_chrY_T0001397;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001397:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18941361	18941562	.	-	.	source_transcript=ENST00000747889.1;source_transcript_name=ENST00000747889;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001397;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001397;transcript_name=HG003_chrY_T0001397;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001397:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18941563	18944377	.	-	.	source_transcript=ENST00000747889.1;source_transcript_name=ENST00000747889;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001397;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001397;transcript_name=HG003_chrY_T0001397;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001397:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18944378	18944451	.	-	.	source_transcript=ENST00000747889.1;source_transcript_name=ENST00000747889;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001397;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001397;transcript_name=HG003_chrY_T0001397;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001397:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18944452	18946299	.	-	.	source_transcript=ENST00000747889.1;source_transcript_name=ENST00000747889;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001397;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001397;transcript_name=HG003_chrY_T0001397;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001397:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18946300	18946407	.	-	.	source_transcript=ENST00000747889.1;source_transcript_name=ENST00000747889;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001397;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001397;transcript_name=HG003_chrY_T0001397;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001397:3;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18946408	18947980	.	-	.	source_transcript=ENST00000747889.1;source_transcript_name=ENST00000747889;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001397;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001397;transcript_name=HG003_chrY_T0001397;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001397:3;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18947981	18948115	.	-	.	source_transcript=ENST00000747889.1;source_transcript_name=ENST00000747889;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001397;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001397;transcript_name=HG003_chrY_T0001397;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001397:4;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18948116	18948425	.	-	.	source_transcript=ENST00000747889.1;source_transcript_name=ENST00000747889;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001397;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001397;transcript_name=HG003_chrY_T0001397;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001397:4;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18948426	18948755	.	-	.	source_transcript=ENST00000747889.1;source_transcript_name=ENST00000747889;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001397;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001397;transcript_name=HG003_chrY_T0001397;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001397:5;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18939991	18946798	1000	-	.	source_transcript=ENST00000747891.1;source_transcript_name=ENST00000747891;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747891.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001398;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_G0000476;transcript_name=HG003_chrY_T0001398;gene_name=ENSG00000297434;ID=HG003_chrY_T0001398;Name=ENSG00000297434
HG003_chrY	CAT	exon	18939991	18940053	.	-	.	source_transcript=ENST00000747891.1;source_transcript_name=ENST00000747891;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747891.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001398;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001398;transcript_name=HG003_chrY_T0001398;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001398:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18940054	18941360	.	-	.	source_transcript=ENST00000747891.1;source_transcript_name=ENST00000747891;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747891.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001398;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001398;transcript_name=HG003_chrY_T0001398;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001398:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18941361	18941562	.	-	.	source_transcript=ENST00000747891.1;source_transcript_name=ENST00000747891;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747891.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001398;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001398;transcript_name=HG003_chrY_T0001398;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001398:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18941563	18944377	.	-	.	source_transcript=ENST00000747891.1;source_transcript_name=ENST00000747891;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747891.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001398;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001398;transcript_name=HG003_chrY_T0001398;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001398:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18944378	18944451	.	-	.	source_transcript=ENST00000747891.1;source_transcript_name=ENST00000747891;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747891.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001398;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001398;transcript_name=HG003_chrY_T0001398;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001398:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18944452	18946299	.	-	.	source_transcript=ENST00000747891.1;source_transcript_name=ENST00000747891;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747891.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001398;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001398;transcript_name=HG003_chrY_T0001398;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001398:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18946300	18946407	.	-	.	source_transcript=ENST00000747891.1;source_transcript_name=ENST00000747891;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747891.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001398;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001398;transcript_name=HG003_chrY_T0001398;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001398:3;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18946408	18946680	.	-	.	source_transcript=ENST00000747891.1;source_transcript_name=ENST00000747891;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747891.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001398;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001398;transcript_name=HG003_chrY_T0001398;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001398:3;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18946681	18946798	.	-	.	source_transcript=ENST00000747891.1;source_transcript_name=ENST00000747891;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747891.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001398;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001398;transcript_name=HG003_chrY_T0001398;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001398:4;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18939992	18948298	1000	-	.	source_transcript=ENST00000747890.1;source_transcript_name=ENST00000747890;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747890.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747890.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001399;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_G0000476;transcript_name=HG003_chrY_T0001399;gene_name=ENSG00000297434;ID=HG003_chrY_T0001399;Name=ENSG00000297434
HG003_chrY	CAT	exon	18939992	18940053	.	-	.	source_transcript=ENST00000747890.1;source_transcript_name=ENST00000747890;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747890.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747890.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001399;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001399;transcript_name=HG003_chrY_T0001399;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001399:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18940054	18941364	.	-	.	source_transcript=ENST00000747890.1;source_transcript_name=ENST00000747890;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747890.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747890.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001399;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001399;transcript_name=HG003_chrY_T0001399;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001399:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18941365	18941562	.	-	.	source_transcript=ENST00000747890.1;source_transcript_name=ENST00000747890;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747890.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747890.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001399;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001399;transcript_name=HG003_chrY_T0001399;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001399:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18941563	18944377	.	-	.	source_transcript=ENST00000747890.1;source_transcript_name=ENST00000747890;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747890.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747890.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001399;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001399;transcript_name=HG003_chrY_T0001399;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001399:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18944378	18944451	.	-	.	source_transcript=ENST00000747890.1;source_transcript_name=ENST00000747890;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747890.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747890.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001399;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001399;transcript_name=HG003_chrY_T0001399;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001399:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18944452	18946288	.	-	.	source_transcript=ENST00000747890.1;source_transcript_name=ENST00000747890;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747890.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747890.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001399;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001399;transcript_name=HG003_chrY_T0001399;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001399:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18946289	18946407	.	-	.	source_transcript=ENST00000747890.1;source_transcript_name=ENST00000747890;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747890.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747890.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001399;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001399;transcript_name=HG003_chrY_T0001399;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001399:3;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18946408	18947980	.	-	.	source_transcript=ENST00000747890.1;source_transcript_name=ENST00000747890;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747890.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747890.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001399;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001399;transcript_name=HG003_chrY_T0001399;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001399:3;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18947981	18948298	.	-	.	source_transcript=ENST00000747890.1;source_transcript_name=ENST00000747890;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747890.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747890.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001399;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001399;transcript_name=HG003_chrY_T0001399;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001399:4;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18939993	18946793	1000	-	.	source_transcript=ENST00000747892.1;source_transcript_name=ENST00000747892;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747892.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747892.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001400;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_G0000476;transcript_name=HG003_chrY_T0001400;gene_name=ENSG00000297434;ID=HG003_chrY_T0001400;Name=ENSG00000297434
HG003_chrY	CAT	exon	18939993	18940053	.	-	.	source_transcript=ENST00000747892.1;source_transcript_name=ENST00000747892;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747892.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747892.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001400;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001400;transcript_name=HG003_chrY_T0001400;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001400:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18940054	18941360	.	-	.	source_transcript=ENST00000747892.1;source_transcript_name=ENST00000747892;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747892.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747892.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001400;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001400;transcript_name=HG003_chrY_T0001400;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001400:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18941361	18941562	.	-	.	source_transcript=ENST00000747892.1;source_transcript_name=ENST00000747892;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747892.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747892.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001400;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001400;transcript_name=HG003_chrY_T0001400;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001400:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18941563	18944377	.	-	.	source_transcript=ENST00000747892.1;source_transcript_name=ENST00000747892;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747892.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747892.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001400;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001400;transcript_name=HG003_chrY_T0001400;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001400:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18944378	18944451	.	-	.	source_transcript=ENST00000747892.1;source_transcript_name=ENST00000747892;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747892.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747892.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001400;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001400;transcript_name=HG003_chrY_T0001400;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001400:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18944452	18946288	.	-	.	source_transcript=ENST00000747892.1;source_transcript_name=ENST00000747892;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747892.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747892.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001400;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001400;transcript_name=HG003_chrY_T0001400;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001400:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18946289	18946407	.	-	.	source_transcript=ENST00000747892.1;source_transcript_name=ENST00000747892;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747892.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747892.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001400;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001400;transcript_name=HG003_chrY_T0001400;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001400:3;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18946408	18946680	.	-	.	source_transcript=ENST00000747892.1;source_transcript_name=ENST00000747892;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747892.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747892.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001400;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001400;transcript_name=HG003_chrY_T0001400;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001400:3;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18946681	18946793	.	-	.	source_transcript=ENST00000747892.1;source_transcript_name=ENST00000747892;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747892.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747892.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001400;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001400;transcript_name=HG003_chrY_T0001400;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001400:4;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18939994	18946793	1000	-	.	source_transcript=ENST00000747893.1;source_transcript_name=ENST00000747893;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747893.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747893.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001401;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_G0000476;transcript_name=HG003_chrY_T0001401;gene_name=ENSG00000297434;ID=HG003_chrY_T0001401;Name=ENSG00000297434
HG003_chrY	CAT	exon	18939994	18940053	.	-	.	source_transcript=ENST00000747893.1;source_transcript_name=ENST00000747893;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747893.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747893.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001401;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001401;transcript_name=HG003_chrY_T0001401;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001401:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18940054	18941360	.	-	.	source_transcript=ENST00000747893.1;source_transcript_name=ENST00000747893;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747893.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747893.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001401;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001401;transcript_name=HG003_chrY_T0001401;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001401:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18941361	18941562	.	-	.	source_transcript=ENST00000747893.1;source_transcript_name=ENST00000747893;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747893.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747893.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001401;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001401;transcript_name=HG003_chrY_T0001401;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001401:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18941563	18943205	.	-	.	source_transcript=ENST00000747893.1;source_transcript_name=ENST00000747893;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747893.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747893.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001401;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001401;transcript_name=HG003_chrY_T0001401;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001401:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18943206	18943273	.	-	.	source_transcript=ENST00000747893.1;source_transcript_name=ENST00000747893;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747893.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747893.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001401;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001401;transcript_name=HG003_chrY_T0001401;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001401:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18943274	18944377	.	-	.	source_transcript=ENST00000747893.1;source_transcript_name=ENST00000747893;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747893.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747893.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001401;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001401;transcript_name=HG003_chrY_T0001401;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001401:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18944378	18944451	.	-	.	source_transcript=ENST00000747893.1;source_transcript_name=ENST00000747893;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747893.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747893.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001401;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001401;transcript_name=HG003_chrY_T0001401;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001401:3;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18944452	18946299	.	-	.	source_transcript=ENST00000747893.1;source_transcript_name=ENST00000747893;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747893.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747893.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001401;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001401;transcript_name=HG003_chrY_T0001401;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001401:3;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18946300	18946407	.	-	.	source_transcript=ENST00000747893.1;source_transcript_name=ENST00000747893;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747893.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747893.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001401;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001401;transcript_name=HG003_chrY_T0001401;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001401:4;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18946408	18946680	.	-	.	source_transcript=ENST00000747893.1;source_transcript_name=ENST00000747893;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747893.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747893.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001401;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001401;transcript_name=HG003_chrY_T0001401;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001401:4;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18946681	18946793	.	-	.	source_transcript=ENST00000747893.1;source_transcript_name=ENST00000747893;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747893.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747893.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001401;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001401;transcript_name=HG003_chrY_T0001401;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001401:5;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18946213	18948308	1000	-	.	source_transcript=ENST00000747894.1;source_transcript_name=ENST00000747894;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747894.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001403;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_G0000476;transcript_name=HG003_chrY_T0001403;gene_name=ENSG00000297434;ID=HG003_chrY_T0001403;Name=ENSG00000297434
HG003_chrY	CAT	exon	18946213	18946407	.	-	.	source_transcript=ENST00000747894.1;source_transcript_name=ENST00000747894;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747894.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001403;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001403;transcript_name=HG003_chrY_T0001403;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001403:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18946408	18947980	.	-	.	source_transcript=ENST00000747894.1;source_transcript_name=ENST00000747894;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747894.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001403;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001403;transcript_name=HG003_chrY_T0001403;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001403:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18947981	18948121	.	-	.	source_transcript=ENST00000747894.1;source_transcript_name=ENST00000747894;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747894.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001403;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001403;transcript_name=HG003_chrY_T0001403;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001403:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18948122	18948224	.	-	.	source_transcript=ENST00000747894.1;source_transcript_name=ENST00000747894;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747894.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001403;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001403;transcript_name=HG003_chrY_T0001403;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001403:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18948225	18948308	.	-	.	source_transcript=ENST00000747894.1;source_transcript_name=ENST00000747894;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747894.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001403;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001403;transcript_name=HG003_chrY_T0001403;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001403:2;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	18946216	18948100	1000	-	.	source_transcript=ENST00000747895.1;source_transcript_name=ENST00000747895;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747895.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747895.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001404;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_G0000476;transcript_name=HG003_chrY_T0001404;gene_name=ENSG00000297434;ID=HG003_chrY_T0001404;Name=ENSG00000297434
HG003_chrY	CAT	exon	18946216	18946407	.	-	.	source_transcript=ENST00000747895.1;source_transcript_name=ENST00000747895;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747895.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747895.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001404;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001404;transcript_name=HG003_chrY_T0001404;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001404:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18946408	18947980	.	-	.	source_transcript=ENST00000747895.1;source_transcript_name=ENST00000747895;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747895.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747895.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001404;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001404;transcript_name=HG003_chrY_T0001404;gene_name=ENSG00000297434;ID=intron:HG003_chrY_T0001404:0;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18947981	18948100	.	-	.	source_transcript=ENST00000747895.1;source_transcript_name=ENST00000747895;source_gene=ENSG00000297434.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297434.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000747895.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000747895.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297434;transcript_id=HG003_chrY_T0001404;gene_id=HG003_chrY_G0000476;Parent=HG003_chrY_T0001404;transcript_name=HG003_chrY_T0001404;gene_name=ENSG00000297434;ID=exon:HG003_chrY_T0001404:1;Name=ENSG00000297434;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18929216	18929543	.	+	.	source_gene_common_name=ELOCP12;source_gene=ENSG00000230412.1;alternative_source_transcripts=ENST00000458706.1;gene_id=HG003_chrY_G0000477;gene_biotype=processed_pseudogene;gene_name=ELOCP12;gene_sources=liftoff;ID=HG003_chrY_G0000477;Name=ELOCP12
HG003_chrY	CAT	transcript	18929216	18929543	1000	+	.	source_transcript=ENST00000458706.1;source_transcript_name=ELOCP12-201;source_gene=ENSG00000230412.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000230412.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000458706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458706.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP12;alternative_source_transcripts=ENST00000458706.1;transcript_id=HG003_chrY_T0001396;gene_id=HG003_chrY_G0000477;Parent=HG003_chrY_G0000477;transcript_name=HG003_chrY_T0001396;gene_name=ELOCP12;ID=HG003_chrY_T0001396;Name=ELOCP12
HG003_chrY	CAT	exon	18929216	18929543	.	+	.	source_transcript=ENST00000458706.1;source_transcript_name=ELOCP12-201;source_gene=ENSG00000230412.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000230412.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000458706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000458706.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP12;alternative_source_transcripts=ENST00000458706.1;transcript_id=HG003_chrY_T0001396;gene_id=HG003_chrY_G0000477;Parent=HG003_chrY_T0001396;transcript_name=HG003_chrY_T0001396;gene_name=ELOCP12;ID=exon:HG003_chrY_T0001396:0;Name=ELOCP12;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18941414	18956936	.	-	.	source_gene_common_name=OFD1P2Y;source_gene=ENSG00000226611.2;gene_id=HG003_chrY_G0000478;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=OFD1P2Y;gene_sources=liftoff;ID=HG003_chrY_G0000478;Name=OFD1P2Y
HG003_chrY	CAT	transcript	18941414	18956936	1000	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_G0000478;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=HG003_chrY_T0001402;Name=OFD1P2Y
HG003_chrY	CAT	exon	18941414	18941562	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=exon:HG003_chrY_T0001402:0;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18941563	18943205	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=intron:HG003_chrY_T0001402:0;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18943206	18943273	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=exon:HG003_chrY_T0001402:1;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18943274	18944377	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=intron:HG003_chrY_T0001402:1;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18944378	18944451	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=exon:HG003_chrY_T0001402:2;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18944452	18946288	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=intron:HG003_chrY_T0001402:2;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18946289	18946407	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=exon:HG003_chrY_T0001402:3;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18946408	18947712	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=intron:HG003_chrY_T0001402:3;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18947713	18947818	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=exon:HG003_chrY_T0001402:4;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18947819	18950907	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=intron:HG003_chrY_T0001402:4;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18950908	18951054	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=exon:HG003_chrY_T0001402:5;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18951055	18951378	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=intron:HG003_chrY_T0001402:5;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18951379	18951515	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=exon:HG003_chrY_T0001402:6;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18951516	18953038	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=intron:HG003_chrY_T0001402:6;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18953039	18953069	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=exon:HG003_chrY_T0001402:7;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18953070	18953154	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=intron:HG003_chrY_T0001402:7;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18953155	18953222	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=exon:HG003_chrY_T0001402:8;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18953223	18955416	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=intron:HG003_chrY_T0001402:8;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18955417	18955617	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=exon:HG003_chrY_T0001402:9;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18955618	18956838	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=intron:HG003_chrY_T0001402:9;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18956839	18956936	.	-	.	source_transcript=ENST00000421895.3;source_transcript_name=OFD1P2Y-201;source_gene=ENSG00000226611.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226611.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421895.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421895.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P2Y;transcript_id=HG003_chrY_T0001402;gene_id=HG003_chrY_G0000478;Parent=HG003_chrY_T0001402;transcript_name=HG003_chrY_T0001402;gene_name=OFD1P2Y;ID=exon:HG003_chrY_T0001402:10;Name=OFD1P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18966047	18968760	.	+	.	source_gene_common_name=TRAPPC2P3;source_gene=ENSG00000224964.1;gene_id=HG003_chrY_G0000479;gene_biotype=unprocessed_pseudogene;gene_name=TRAPPC2P3;gene_sources=liftoff;ID=HG003_chrY_G0000479;Name=TRAPPC2P3
HG003_chrY	CAT	transcript	18966047	18968760	1000	+	.	source_transcript=ENST00000443200.1;source_transcript_name=TRAPPC2P3-201;source_gene=ENSG00000224964.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224964.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443200.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P3;transcript_id=HG003_chrY_T0001405;gene_id=HG003_chrY_G0000479;Parent=HG003_chrY_G0000479;transcript_name=HG003_chrY_T0001405;gene_name=TRAPPC2P3;ID=HG003_chrY_T0001405;Name=TRAPPC2P3
HG003_chrY	CAT	exon	18966047	18966139	.	+	.	source_transcript=ENST00000443200.1;source_transcript_name=TRAPPC2P3-201;source_gene=ENSG00000224964.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224964.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P3;transcript_id=HG003_chrY_T0001405;gene_id=HG003_chrY_G0000479;Parent=HG003_chrY_T0001405;transcript_name=HG003_chrY_T0001405;gene_name=TRAPPC2P3;ID=exon:HG003_chrY_T0001405:0;Name=TRAPPC2P3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18966140	18968091	.	+	.	source_transcript=ENST00000443200.1;source_transcript_name=TRAPPC2P3-201;source_gene=ENSG00000224964.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224964.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P3;transcript_id=HG003_chrY_T0001405;gene_id=HG003_chrY_G0000479;Parent=HG003_chrY_T0001405;transcript_name=HG003_chrY_T0001405;gene_name=TRAPPC2P3;ID=intron:HG003_chrY_T0001405:0;Name=TRAPPC2P3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18968092	18968233	.	+	.	source_transcript=ENST00000443200.1;source_transcript_name=TRAPPC2P3-201;source_gene=ENSG00000224964.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224964.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P3;transcript_id=HG003_chrY_T0001405;gene_id=HG003_chrY_G0000479;Parent=HG003_chrY_T0001405;transcript_name=HG003_chrY_T0001405;gene_name=TRAPPC2P3;ID=exon:HG003_chrY_T0001405:1;Name=TRAPPC2P3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18968234	18968674	.	+	.	source_transcript=ENST00000443200.1;source_transcript_name=TRAPPC2P3-201;source_gene=ENSG00000224964.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224964.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P3;transcript_id=HG003_chrY_T0001405;gene_id=HG003_chrY_G0000479;Parent=HG003_chrY_T0001405;transcript_name=HG003_chrY_T0001405;gene_name=TRAPPC2P3;ID=intron:HG003_chrY_T0001405:1;Name=TRAPPC2P3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18968675	18968760	.	+	.	source_transcript=ENST00000443200.1;source_transcript_name=TRAPPC2P3-201;source_gene=ENSG00000224964.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224964.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P3;transcript_id=HG003_chrY_T0001405;gene_id=HG003_chrY_G0000479;Parent=HG003_chrY_T0001405;transcript_name=HG003_chrY_T0001405;gene_name=TRAPPC2P3;ID=exon:HG003_chrY_T0001405:2;Name=TRAPPC2P3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18977259	18978428	.	+	.	source_gene_common_name=USP9YP27;source_gene=ENSG00000235521.1;gene_id=HG003_chrY_G0000480;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP27;gene_sources=liftoff;ID=HG003_chrY_G0000480;Name=USP9YP27
HG003_chrY	CAT	transcript	18977259	18978428	1000	+	.	source_transcript=ENST00000418455.1;source_transcript_name=USP9YP27-201;source_gene=ENSG00000235521.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235521.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418455.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418455.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP27;transcript_id=HG003_chrY_T0001406;gene_id=HG003_chrY_G0000480;Parent=HG003_chrY_G0000480;transcript_name=HG003_chrY_T0001406;gene_name=USP9YP27;ID=HG003_chrY_T0001406;Name=USP9YP27
HG003_chrY	CAT	exon	18977259	18977400	.	+	.	source_transcript=ENST00000418455.1;source_transcript_name=USP9YP27-201;source_gene=ENSG00000235521.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235521.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418455.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418455.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP27;transcript_id=HG003_chrY_T0001406;gene_id=HG003_chrY_G0000480;Parent=HG003_chrY_T0001406;transcript_name=HG003_chrY_T0001406;gene_name=USP9YP27;ID=exon:HG003_chrY_T0001406:0;Name=USP9YP27;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18977401	18977552	.	+	.	source_transcript=ENST00000418455.1;source_transcript_name=USP9YP27-201;source_gene=ENSG00000235521.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235521.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418455.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418455.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP27;transcript_id=HG003_chrY_T0001406;gene_id=HG003_chrY_G0000480;Parent=HG003_chrY_T0001406;transcript_name=HG003_chrY_T0001406;gene_name=USP9YP27;ID=intron:HG003_chrY_T0001406:0;Name=USP9YP27;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18977553	18977581	.	+	.	source_transcript=ENST00000418455.1;source_transcript_name=USP9YP27-201;source_gene=ENSG00000235521.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235521.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418455.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418455.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP27;transcript_id=HG003_chrY_T0001406;gene_id=HG003_chrY_G0000480;Parent=HG003_chrY_T0001406;transcript_name=HG003_chrY_T0001406;gene_name=USP9YP27;ID=exon:HG003_chrY_T0001406:1;Name=USP9YP27;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18977582	18977781	.	+	.	source_transcript=ENST00000418455.1;source_transcript_name=USP9YP27-201;source_gene=ENSG00000235521.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235521.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418455.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418455.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP27;transcript_id=HG003_chrY_T0001406;gene_id=HG003_chrY_G0000480;Parent=HG003_chrY_T0001406;transcript_name=HG003_chrY_T0001406;gene_name=USP9YP27;ID=intron:HG003_chrY_T0001406:1;Name=USP9YP27;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18977782	18977952	.	+	.	source_transcript=ENST00000418455.1;source_transcript_name=USP9YP27-201;source_gene=ENSG00000235521.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235521.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418455.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418455.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP27;transcript_id=HG003_chrY_T0001406;gene_id=HG003_chrY_G0000480;Parent=HG003_chrY_T0001406;transcript_name=HG003_chrY_T0001406;gene_name=USP9YP27;ID=exon:HG003_chrY_T0001406:2;Name=USP9YP27;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18977953	18978332	.	+	.	source_transcript=ENST00000418455.1;source_transcript_name=USP9YP27-201;source_gene=ENSG00000235521.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235521.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418455.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418455.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP27;transcript_id=HG003_chrY_T0001406;gene_id=HG003_chrY_G0000480;Parent=HG003_chrY_T0001406;transcript_name=HG003_chrY_T0001406;gene_name=USP9YP27;ID=intron:HG003_chrY_T0001406:2;Name=USP9YP27;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18978333	18978428	.	+	.	source_transcript=ENST00000418455.1;source_transcript_name=USP9YP27-201;source_gene=ENSG00000235521.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235521.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418455.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418455.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP27;transcript_id=HG003_chrY_T0001406;gene_id=HG003_chrY_G0000480;Parent=HG003_chrY_T0001406;transcript_name=HG003_chrY_T0001406;gene_name=USP9YP27;ID=exon:HG003_chrY_T0001406:3;Name=USP9YP27;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18977581	18977740	.	+	.	source_gene_common_name=RNU1-128P;source_gene=ENSG00000252513.1;gene_id=HG003_chrY_G0000481;gene_biotype=snRNA;gene_name=RNU1-128P;gene_sources=liftoff;ID=HG003_chrY_G0000481;Name=RNU1-128P
HG003_chrY	CAT	transcript	18977581	18977740	1000	+	.	source_transcript=ENST00000516704.1;source_transcript_name=RNU1-128P-201;source_gene=ENSG00000252513.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252513.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516704.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-128P;transcript_id=HG003_chrY_T0001407;gene_id=HG003_chrY_G0000481;Parent=HG003_chrY_G0000481;transcript_name=HG003_chrY_T0001407;gene_name=RNU1-128P;ID=HG003_chrY_T0001407;Name=RNU1-128P
HG003_chrY	CAT	exon	18977581	18977740	.	+	.	source_transcript=ENST00000516704.1;source_transcript_name=RNU1-128P-201;source_gene=ENSG00000252513.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252513.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516704.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516704.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-128P;transcript_id=HG003_chrY_T0001407;gene_id=HG003_chrY_G0000481;Parent=HG003_chrY_T0001407;transcript_name=HG003_chrY_T0001407;gene_name=RNU1-128P;ID=exon:HG003_chrY_T0001407:0;Name=RNU1-128P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18981920	18984524	.	-	.	source_gene_common_name=USP9YP16;source_gene=ENSG00000232744.1;alternative_source_transcripts=ENST00000430287.1;gene_id=HG003_chrY_G0000482;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP16;gene_sources=liftoff;ID=HG003_chrY_G0000482;Name=USP9YP16
HG003_chrY	CAT	transcript	18981920	18984524	1000	-	.	source_transcript=ENST00000430287.1;source_transcript_name=USP9YP16-201;source_gene=ENSG00000232744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430287.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP16;alternative_source_transcripts=ENST00000430287.1;transcript_id=HG003_chrY_T0001408;gene_id=HG003_chrY_G0000482;Parent=HG003_chrY_G0000482;transcript_name=HG003_chrY_T0001408;gene_name=USP9YP16;ID=HG003_chrY_T0001408;Name=USP9YP16
HG003_chrY	CAT	exon	18981920	18982108	.	-	.	source_transcript=ENST00000430287.1;source_transcript_name=USP9YP16-201;source_gene=ENSG00000232744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP16;alternative_source_transcripts=ENST00000430287.1;transcript_id=HG003_chrY_T0001408;gene_id=HG003_chrY_G0000482;Parent=HG003_chrY_T0001408;transcript_name=HG003_chrY_T0001408;gene_name=USP9YP16;ID=exon:HG003_chrY_T0001408:0;Name=USP9YP16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18982109	18983733	.	-	.	source_transcript=ENST00000430287.1;source_transcript_name=USP9YP16-201;source_gene=ENSG00000232744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP16;alternative_source_transcripts=ENST00000430287.1;transcript_id=HG003_chrY_T0001408;gene_id=HG003_chrY_G0000482;Parent=HG003_chrY_T0001408;transcript_name=HG003_chrY_T0001408;gene_name=USP9YP16;ID=intron:HG003_chrY_T0001408:0;Name=USP9YP16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18983734	18983825	.	-	.	source_transcript=ENST00000430287.1;source_transcript_name=USP9YP16-201;source_gene=ENSG00000232744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP16;alternative_source_transcripts=ENST00000430287.1;transcript_id=HG003_chrY_T0001408;gene_id=HG003_chrY_G0000482;Parent=HG003_chrY_T0001408;transcript_name=HG003_chrY_T0001408;gene_name=USP9YP16;ID=exon:HG003_chrY_T0001408:1;Name=USP9YP16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18983826	18984398	.	-	.	source_transcript=ENST00000430287.1;source_transcript_name=USP9YP16-201;source_gene=ENSG00000232744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP16;alternative_source_transcripts=ENST00000430287.1;transcript_id=HG003_chrY_T0001408;gene_id=HG003_chrY_G0000482;Parent=HG003_chrY_T0001408;transcript_name=HG003_chrY_T0001408;gene_name=USP9YP16;ID=intron:HG003_chrY_T0001408:1;Name=USP9YP16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18984399	18984524	.	-	.	source_transcript=ENST00000430287.1;source_transcript_name=USP9YP16-201;source_gene=ENSG00000232744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430287.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430287.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP16;alternative_source_transcripts=ENST00000430287.1;transcript_id=HG003_chrY_T0001408;gene_id=HG003_chrY_G0000482;Parent=HG003_chrY_T0001408;transcript_name=HG003_chrY_T0001408;gene_name=USP9YP16;ID=exon:HG003_chrY_T0001408:2;Name=USP9YP16;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18989335	18997619	.	+	.	source_gene_common_name=XKRY;source_gene=ENSG00000250868.5;gene_id=HG003_chrY_G0000483;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=XKRY;gene_sources=liftoff;ID=HG003_chrY_G0000483;Name=XKRY
HG003_chrY	CAT	transcript	18989335	18997619	1000	+	.	source_transcript=ENST00000510392.1;source_transcript_name=XKRY-201;source_gene=ENSG00000250868.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000250868.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000510392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000510392.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY;transcript_id=HG003_chrY_T0001409;gene_id=HG003_chrY_G0000483;Parent=HG003_chrY_G0000483;transcript_name=HG003_chrY_T0001409;gene_name=XKRY;ID=HG003_chrY_T0001409;Name=XKRY
HG003_chrY	CAT	exon	18989335	18989669	.	+	.	source_transcript=ENST00000510392.1;source_transcript_name=XKRY-201;source_gene=ENSG00000250868.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000250868.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000510392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000510392.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY;transcript_id=HG003_chrY_T0001409;gene_id=HG003_chrY_G0000483;Parent=HG003_chrY_T0001409;transcript_name=HG003_chrY_T0001409;gene_name=XKRY;ID=exon:HG003_chrY_T0001409:0;Name=XKRY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	18989670	18996854	.	+	.	source_transcript=ENST00000510392.1;source_transcript_name=XKRY-201;source_gene=ENSG00000250868.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000250868.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000510392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000510392.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY;transcript_id=HG003_chrY_T0001409;gene_id=HG003_chrY_G0000483;Parent=HG003_chrY_T0001409;transcript_name=HG003_chrY_T0001409;gene_name=XKRY;ID=intron:HG003_chrY_T0001409:0;Name=XKRY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	18996855	18997619	.	+	.	source_transcript=ENST00000510392.1;source_transcript_name=XKRY-201;source_gene=ENSG00000250868.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000250868.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000510392.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000510392.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY;transcript_id=HG003_chrY_T0001409;gene_id=HG003_chrY_G0000483;Parent=HG003_chrY_T0001409;transcript_name=HG003_chrY_T0001409;gene_name=XKRY;ID=exon:HG003_chrY_T0001409:1;Name=XKRY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	18996175	18997755	.	+	.	source_gene_common_name=XKRY;source_gene=ENSG00000290724.1;gene_id=HG003_chrY_G0000484;gene_biotype=lncRNA;gene_name=XKRY;gene_sources=liftoff;ID=HG003_chrY_G0000484;Name=XKRY
HG003_chrY	CAT	transcript	18996175	18997755	1000	+	.	source_transcript=ENST00000624960.1;source_transcript_name=XKRY-202;source_gene=ENSG00000290724.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290724.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000624960.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000624960.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY;transcript_id=HG003_chrY_T0001410;gene_id=HG003_chrY_G0000484;Parent=HG003_chrY_G0000484;transcript_name=HG003_chrY_T0001410;gene_name=XKRY;ID=HG003_chrY_T0001410;Name=XKRY
HG003_chrY	CAT	exon	18996175	18997755	.	+	.	source_transcript=ENST00000624960.1;source_transcript_name=XKRY-202;source_gene=ENSG00000290724.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290724.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000624960.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000624960.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRY;transcript_id=HG003_chrY_T0001410;gene_id=HG003_chrY_G0000484;Parent=HG003_chrY_T0001410;transcript_name=HG003_chrY_T0001410;gene_name=XKRY;ID=exon:HG003_chrY_T0001410:0;Name=XKRY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19008610	19009734	.	+	.	source_gene_common_name=ACTG1P2;source_gene=ENSG00000229129.1;alternative_source_transcripts=ENST00000425411.1;gene_id=HG003_chrY_G0000485;gene_biotype=processed_pseudogene;gene_name=ACTG1P2;gene_sources=liftoff;ID=HG003_chrY_G0000485;Name=ACTG1P2
HG003_chrY	CAT	transcript	19008610	19009734	1000	+	.	source_transcript=ENST00000415776.1;source_transcript_name=ACTG1P2-201;source_gene=ENSG00000229129.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229129.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000415776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415776.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ACTG1P2;alternative_source_transcripts=ENST00000425411.1;transcript_id=HG003_chrY_T0001411;gene_id=HG003_chrY_G0000485;Parent=HG003_chrY_G0000485;transcript_name=HG003_chrY_T0001411;gene_name=ACTG1P2;ID=HG003_chrY_T0001411;Name=ACTG1P2
HG003_chrY	CAT	exon	19008610	19009734	.	+	.	source_transcript=ENST00000415776.1;source_transcript_name=ACTG1P2-201;source_gene=ENSG00000229129.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229129.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000415776.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415776.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ACTG1P2;alternative_source_transcripts=ENST00000425411.1;transcript_id=HG003_chrY_T0001411;gene_id=HG003_chrY_G0000485;Parent=HG003_chrY_T0001411;transcript_name=HG003_chrY_T0001411;gene_name=ACTG1P2;ID=exon:HG003_chrY_T0001411:0;Name=ACTG1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19036981	19063679	.	+	.	source_gene_common_name=ENSG00000310304;source_gene=ENSG00000310304.1;alternative_source_transcripts=ENST00000848900.1;gene_id=HG003_chrY_G0000486;gene_biotype=lncRNA;gene_name=ENSG00000310304;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000486;Name=ENSG00000310304
HG003_chrY	CAT	transcript	19036981	19049161	1000	+	.	source_transcript=ENST00000848900.1;source_transcript_name=ENST00000848900;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848900.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848900.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848900.1;transcript_id=HG003_chrY_T0001412;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_G0000486;transcript_name=HG003_chrY_T0001412;gene_name=ENSG00000310304;ID=HG003_chrY_T0001412;Name=ENSG00000310304
HG003_chrY	CAT	exon	19036981	19037422	.	+	.	source_transcript=ENST00000848900.1;source_transcript_name=ENST00000848900;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848900.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848900.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848900.1;transcript_id=HG003_chrY_T0001412;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001412;transcript_name=HG003_chrY_T0001412;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001412:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19037423	19047864	.	+	.	source_transcript=ENST00000848900.1;source_transcript_name=ENST00000848900;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848900.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848900.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848900.1;transcript_id=HG003_chrY_T0001412;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001412;transcript_name=HG003_chrY_T0001412;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001412:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19047865	19049161	.	+	.	source_transcript=ENST00000848900.1;source_transcript_name=ENST00000848900;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848900.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848900.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848900.1;transcript_id=HG003_chrY_T0001412;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001412;transcript_name=HG003_chrY_T0001412;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001412:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19037039	19052723	1000	+	.	source_transcript=ENST00000848895.1;source_transcript_name=ENST00000848895;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848895.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848895.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848895.1;transcript_id=HG003_chrY_T0001413;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_G0000486;transcript_name=HG003_chrY_T0001413;gene_name=ENSG00000310304;ID=HG003_chrY_T0001413;Name=ENSG00000310304
HG003_chrY	CAT	exon	19037039	19037422	.	+	.	source_transcript=ENST00000848895.1;source_transcript_name=ENST00000848895;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848895.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848895.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848895.1;transcript_id=HG003_chrY_T0001413;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001413;transcript_name=HG003_chrY_T0001413;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001413:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19037423	19047864	.	+	.	source_transcript=ENST00000848895.1;source_transcript_name=ENST00000848895;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848895.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848895.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848895.1;transcript_id=HG003_chrY_T0001413;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001413;transcript_name=HG003_chrY_T0001413;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001413:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19047865	19047989	.	+	.	source_transcript=ENST00000848895.1;source_transcript_name=ENST00000848895;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848895.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848895.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848895.1;transcript_id=HG003_chrY_T0001413;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001413;transcript_name=HG003_chrY_T0001413;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001413:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19047990	19051679	.	+	.	source_transcript=ENST00000848895.1;source_transcript_name=ENST00000848895;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848895.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848895.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848895.1;transcript_id=HG003_chrY_T0001413;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001413;transcript_name=HG003_chrY_T0001413;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001413:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19051680	19052723	.	+	.	source_transcript=ENST00000848895.1;source_transcript_name=ENST00000848895;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848895.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848895.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848895.1;transcript_id=HG003_chrY_T0001413;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001413;transcript_name=HG003_chrY_T0001413;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001413:2;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19037064	19052715	1000	+	.	source_transcript=ENST00000848897.1;source_transcript_name=ENST00000848897;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848897.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848897.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848897.1;transcript_id=HG003_chrY_T0001414;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_G0000486;transcript_name=HG003_chrY_T0001414;gene_name=ENSG00000310304;ID=HG003_chrY_T0001414;Name=ENSG00000310304
HG003_chrY	CAT	exon	19037064	19037353	.	+	.	source_transcript=ENST00000848897.1;source_transcript_name=ENST00000848897;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848897.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848897.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848897.1;transcript_id=HG003_chrY_T0001414;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001414;transcript_name=HG003_chrY_T0001414;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001414:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19037354	19047864	.	+	.	source_transcript=ENST00000848897.1;source_transcript_name=ENST00000848897;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848897.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848897.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848897.1;transcript_id=HG003_chrY_T0001414;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001414;transcript_name=HG003_chrY_T0001414;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001414:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19047865	19047989	.	+	.	source_transcript=ENST00000848897.1;source_transcript_name=ENST00000848897;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848897.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848897.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848897.1;transcript_id=HG003_chrY_T0001414;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001414;transcript_name=HG003_chrY_T0001414;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001414:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19047990	19051679	.	+	.	source_transcript=ENST00000848897.1;source_transcript_name=ENST00000848897;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848897.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848897.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848897.1;transcript_id=HG003_chrY_T0001414;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001414;transcript_name=HG003_chrY_T0001414;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001414:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19051680	19052715	.	+	.	source_transcript=ENST00000848897.1;source_transcript_name=ENST00000848897;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848897.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848897.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848897.1;transcript_id=HG003_chrY_T0001414;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001414;transcript_name=HG003_chrY_T0001414;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001414:2;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19037064	19052715	1000	+	.	source_transcript=ENST00000848898.1;source_transcript_name=ENST00000848898;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848898.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848898.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848898.1;transcript_id=HG003_chrY_T0001415;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_G0000486;transcript_name=HG003_chrY_T0001415;gene_name=ENSG00000310304;ID=HG003_chrY_T0001415;Name=ENSG00000310304
HG003_chrY	CAT	exon	19037064	19037422	.	+	.	source_transcript=ENST00000848898.1;source_transcript_name=ENST00000848898;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848898.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848898.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848898.1;transcript_id=HG003_chrY_T0001415;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001415;transcript_name=HG003_chrY_T0001415;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001415:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19037423	19047868	.	+	.	source_transcript=ENST00000848898.1;source_transcript_name=ENST00000848898;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848898.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848898.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848898.1;transcript_id=HG003_chrY_T0001415;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001415;transcript_name=HG003_chrY_T0001415;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001415:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19047869	19047989	.	+	.	source_transcript=ENST00000848898.1;source_transcript_name=ENST00000848898;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848898.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848898.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848898.1;transcript_id=HG003_chrY_T0001415;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001415;transcript_name=HG003_chrY_T0001415;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001415:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19047990	19051679	.	+	.	source_transcript=ENST00000848898.1;source_transcript_name=ENST00000848898;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848898.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848898.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848898.1;transcript_id=HG003_chrY_T0001415;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001415;transcript_name=HG003_chrY_T0001415;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001415:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19051680	19052715	.	+	.	source_transcript=ENST00000848898.1;source_transcript_name=ENST00000848898;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848898.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848898.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848898.1;transcript_id=HG003_chrY_T0001415;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001415;transcript_name=HG003_chrY_T0001415;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001415:2;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19037066	19052720	1000	+	.	source_transcript=ENST00000848896.1;source_transcript_name=ENST00000848896;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848896.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848896.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848896.1;transcript_id=HG003_chrY_T0001416;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_G0000486;transcript_name=HG003_chrY_T0001416;gene_name=ENSG00000310304;ID=HG003_chrY_T0001416;Name=ENSG00000310304
HG003_chrY	CAT	exon	19037066	19037422	.	+	.	source_transcript=ENST00000848896.1;source_transcript_name=ENST00000848896;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848896.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848896.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848896.1;transcript_id=HG003_chrY_T0001416;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001416;transcript_name=HG003_chrY_T0001416;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001416:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19037423	19051679	.	+	.	source_transcript=ENST00000848896.1;source_transcript_name=ENST00000848896;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848896.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848896.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848896.1;transcript_id=HG003_chrY_T0001416;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001416;transcript_name=HG003_chrY_T0001416;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001416:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19051680	19052720	.	+	.	source_transcript=ENST00000848896.1;source_transcript_name=ENST00000848896;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848896.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848896.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848896.1;transcript_id=HG003_chrY_T0001416;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001416;transcript_name=HG003_chrY_T0001416;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001416:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19037067	19039573	1000	+	.	source_transcript=ENST00000848904.1;source_transcript_name=ENST00000848904;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848904.1;alignment_mode=transMap;normalized_transcript_id=ENST00000848904.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;transcript_id=HG003_chrY_T0001417;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_G0000486;transcript_name=HG003_chrY_T0001417;gene_name=ENSG00000310304;ID=HG003_chrY_T0001417;Name=ENSG00000310304
HG003_chrY	CAT	exon	19037067	19037422	.	+	.	source_transcript=ENST00000848904.1;source_transcript_name=ENST00000848904;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848904.1;alignment_mode=transMap;normalized_transcript_id=ENST00000848904.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;transcript_id=HG003_chrY_T0001417;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001417;transcript_name=HG003_chrY_T0001417;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001417:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19037423	19039010	.	+	.	source_transcript=ENST00000848904.1;source_transcript_name=ENST00000848904;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848904.1;alignment_mode=transMap;normalized_transcript_id=ENST00000848904.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;transcript_id=HG003_chrY_T0001417;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001417;transcript_name=HG003_chrY_T0001417;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001417:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19039011	19039573	.	+	.	source_transcript=ENST00000848904.1;source_transcript_name=ENST00000848904;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848904.1;alignment_mode=transMap;normalized_transcript_id=ENST00000848904.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;transcript_id=HG003_chrY_T0001417;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001417;transcript_name=HG003_chrY_T0001417;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001417:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19037067	19039572	1000	+	.	source_transcript=ENST00000848904.1;source_transcript_name=ENST00000848904;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848904.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848904.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;transcript_id=HG003_chrY_T0001418;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_G0000486;transcript_name=HG003_chrY_T0001418;gene_name=ENSG00000310304;ID=HG003_chrY_T0001418;Name=ENSG00000310304
HG003_chrY	CAT	exon	19037067	19037422	.	+	.	source_transcript=ENST00000848904.1;source_transcript_name=ENST00000848904;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848904.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848904.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;transcript_id=HG003_chrY_T0001418;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001418;transcript_name=HG003_chrY_T0001418;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001418:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19037423	19039010	.	+	.	source_transcript=ENST00000848904.1;source_transcript_name=ENST00000848904;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848904.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848904.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;transcript_id=HG003_chrY_T0001418;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001418;transcript_name=HG003_chrY_T0001418;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001418:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19039011	19039572	.	+	.	source_transcript=ENST00000848904.1;source_transcript_name=ENST00000848904;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848904.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848904.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;transcript_id=HG003_chrY_T0001418;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001418;transcript_name=HG003_chrY_T0001418;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001418:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19037070	19049161	1000	+	.	source_transcript=ENST00000848901.1;source_transcript_name=ENST00000848901;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848901.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848901.1;transcript_id=HG003_chrY_T0001419;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_G0000486;transcript_name=HG003_chrY_T0001419;gene_name=ENSG00000310304;ID=HG003_chrY_T0001419;Name=ENSG00000310304
HG003_chrY	CAT	exon	19037070	19037353	.	+	.	source_transcript=ENST00000848901.1;source_transcript_name=ENST00000848901;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848901.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848901.1;transcript_id=HG003_chrY_T0001419;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001419;transcript_name=HG003_chrY_T0001419;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001419:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19037354	19047864	.	+	.	source_transcript=ENST00000848901.1;source_transcript_name=ENST00000848901;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848901.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848901.1;transcript_id=HG003_chrY_T0001419;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001419;transcript_name=HG003_chrY_T0001419;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001419:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19047865	19049161	.	+	.	source_transcript=ENST00000848901.1;source_transcript_name=ENST00000848901;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848901.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848901.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848901.1;transcript_id=HG003_chrY_T0001419;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001419;transcript_name=HG003_chrY_T0001419;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001419:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19037075	19048025	1000	+	.	source_transcript=ENST00000848902.1;source_transcript_name=ENST00000848902;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848902.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848902.1;transcript_id=HG003_chrY_T0001420;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_G0000486;transcript_name=HG003_chrY_T0001420;gene_name=ENSG00000310304;ID=HG003_chrY_T0001420;Name=ENSG00000310304
HG003_chrY	CAT	exon	19037075	19037422	.	+	.	source_transcript=ENST00000848902.1;source_transcript_name=ENST00000848902;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848902.1;transcript_id=HG003_chrY_T0001420;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001420;transcript_name=HG003_chrY_T0001420;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001420:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19037423	19047868	.	+	.	source_transcript=ENST00000848902.1;source_transcript_name=ENST00000848902;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848902.1;transcript_id=HG003_chrY_T0001420;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001420;transcript_name=HG003_chrY_T0001420;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001420:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19047869	19048025	.	+	.	source_transcript=ENST00000848902.1;source_transcript_name=ENST00000848902;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848902.1;transcript_id=HG003_chrY_T0001420;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001420;transcript_name=HG003_chrY_T0001420;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001420:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19037106	19063679	1000	+	.	source_transcript=ENST00000848894.1;source_transcript_name=ENST00000848894;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848894.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848894.1;transcript_id=HG003_chrY_T0001421;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_G0000486;transcript_name=HG003_chrY_T0001421;gene_name=ENSG00000310304;ID=HG003_chrY_T0001421;Name=ENSG00000310304
HG003_chrY	CAT	exon	19037106	19037422	.	+	.	source_transcript=ENST00000848894.1;source_transcript_name=ENST00000848894;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848894.1;transcript_id=HG003_chrY_T0001421;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001421;transcript_name=HG003_chrY_T0001421;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001421:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19037423	19060559	.	+	.	source_transcript=ENST00000848894.1;source_transcript_name=ENST00000848894;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848894.1;transcript_id=HG003_chrY_T0001421;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001421;transcript_name=HG003_chrY_T0001421;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001421:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19060560	19060778	.	+	.	source_transcript=ENST00000848894.1;source_transcript_name=ENST00000848894;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848894.1;transcript_id=HG003_chrY_T0001421;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001421;transcript_name=HG003_chrY_T0001421;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001421:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19060779	19061670	.	+	.	source_transcript=ENST00000848894.1;source_transcript_name=ENST00000848894;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848894.1;transcript_id=HG003_chrY_T0001421;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001421;transcript_name=HG003_chrY_T0001421;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001421:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19061671	19061795	.	+	.	source_transcript=ENST00000848894.1;source_transcript_name=ENST00000848894;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848894.1;transcript_id=HG003_chrY_T0001421;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001421;transcript_name=HG003_chrY_T0001421;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001421:2;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19061796	19063388	.	+	.	source_transcript=ENST00000848894.1;source_transcript_name=ENST00000848894;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848894.1;transcript_id=HG003_chrY_T0001421;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001421;transcript_name=HG003_chrY_T0001421;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001421:2;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19063389	19063679	.	+	.	source_transcript=ENST00000848894.1;source_transcript_name=ENST00000848894;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848894.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848894.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848894.1;transcript_id=HG003_chrY_T0001421;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001421;transcript_name=HG003_chrY_T0001421;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001421:3;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19037106	19052189	1000	+	.	source_transcript=ENST00000848899.1;source_transcript_name=ENST00000848899;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848899.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848899.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848899.1;transcript_id=HG003_chrY_T0001422;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_G0000486;transcript_name=HG003_chrY_T0001422;gene_name=ENSG00000310304;ID=HG003_chrY_T0001422;Name=ENSG00000310304
HG003_chrY	CAT	exon	19037106	19037353	.	+	.	source_transcript=ENST00000848899.1;source_transcript_name=ENST00000848899;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848899.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848899.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848899.1;transcript_id=HG003_chrY_T0001422;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001422;transcript_name=HG003_chrY_T0001422;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001422:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19037354	19051679	.	+	.	source_transcript=ENST00000848899.1;source_transcript_name=ENST00000848899;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848899.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848899.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848899.1;transcript_id=HG003_chrY_T0001422;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001422;transcript_name=HG003_chrY_T0001422;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001422:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19051680	19052189	.	+	.	source_transcript=ENST00000848899.1;source_transcript_name=ENST00000848899;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848899.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848899.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848899.1;transcript_id=HG003_chrY_T0001422;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001422;transcript_name=HG003_chrY_T0001422;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001422:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19037116	19043003	1000	+	.	source_transcript=ENST00000848903.1;source_transcript_name=ENST00000848903;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848903.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848903.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848903.1;transcript_id=HG003_chrY_T0001423;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_G0000486;transcript_name=HG003_chrY_T0001423;gene_name=ENSG00000310304;ID=HG003_chrY_T0001423;Name=ENSG00000310304
HG003_chrY	CAT	exon	19037116	19037422	.	+	.	source_transcript=ENST00000848903.1;source_transcript_name=ENST00000848903;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848903.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848903.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848903.1;transcript_id=HG003_chrY_T0001423;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001423;transcript_name=HG003_chrY_T0001423;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001423:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19037423	19042369	.	+	.	source_transcript=ENST00000848903.1;source_transcript_name=ENST00000848903;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848903.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848903.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848903.1;transcript_id=HG003_chrY_T0001423;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001423;transcript_name=HG003_chrY_T0001423;gene_name=ENSG00000310304;ID=intron:HG003_chrY_T0001423:0;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19042370	19043003	.	+	.	source_transcript=ENST00000848903.1;source_transcript_name=ENST00000848903;source_gene=ENSG00000310304.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310304.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848903.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848903.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310304;alternative_source_transcripts=ENST00000848903.1;transcript_id=HG003_chrY_T0001423;gene_id=HG003_chrY_G0000486;Parent=HG003_chrY_T0001423;transcript_name=HG003_chrY_T0001423;gene_name=ENSG00000310304;ID=exon:HG003_chrY_T0001423:1;Name=ENSG00000310304;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19039656	19039984	.	-	.	source_gene_common_name=ELOCP26;source_gene=ENSG00000236599.1;alternative_source_transcripts=ENST00000436067.1;gene_id=HG003_chrY_G0000487;gene_biotype=processed_pseudogene;gene_name=ELOCP26;gene_sources=liftoff;ID=HG003_chrY_G0000487;Name=ELOCP26
HG003_chrY	CAT	transcript	19039656	19039984	1000	-	.	source_transcript=ENST00000436067.1;source_transcript_name=ELOCP26-201;source_gene=ENSG00000236599.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000236599.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000436067.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436067.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP26;alternative_source_transcripts=ENST00000436067.1;transcript_id=HG003_chrY_T0001424;gene_id=HG003_chrY_G0000487;Parent=HG003_chrY_G0000487;transcript_name=HG003_chrY_T0001424;gene_name=ELOCP26;ID=HG003_chrY_T0001424;Name=ELOCP26
HG003_chrY	CAT	exon	19039656	19039984	.	-	.	source_transcript=ENST00000436067.1;source_transcript_name=ELOCP26-201;source_gene=ENSG00000236599.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000236599.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000436067.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436067.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP26;alternative_source_transcripts=ENST00000436067.1;transcript_id=HG003_chrY_T0001424;gene_id=HG003_chrY_G0000487;Parent=HG003_chrY_T0001424;transcript_name=HG003_chrY_T0001424;gene_name=ELOCP26;ID=exon:HG003_chrY_T0001424:0;Name=ELOCP26;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19043559	19045138	.	-	.	source_gene_common_name=CDY9P;source_gene=ENSG00000232899.1;alternative_source_transcripts=ENST00000451397.1;gene_id=HG003_chrY_G0000488;gene_biotype=unprocessed_pseudogene;gene_name=CDY9P;gene_sources=liftoff;ID=HG003_chrY_G0000488;Name=CDY9P
HG003_chrY	CAT	transcript	19043559	19045138	1000	-	.	source_transcript=ENST00000451397.1;source_transcript_name=CDY9P-201;source_gene=ENSG00000232899.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232899.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000451397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451397.1;transcript_score=199.937;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY9P;alternative_source_transcripts=ENST00000451397.1;transcript_id=HG003_chrY_T0001425;gene_id=HG003_chrY_G0000488;Parent=HG003_chrY_G0000488;transcript_name=HG003_chrY_T0001425;gene_name=CDY9P;ID=HG003_chrY_T0001425;Name=CDY9P
HG003_chrY	CAT	exon	19043559	19045138	.	-	.	source_transcript=ENST00000451397.1;source_transcript_name=CDY9P-201;source_gene=ENSG00000232899.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232899.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000451397.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451397.1;transcript_score=199.937;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY9P;alternative_source_transcripts=ENST00000451397.1;transcript_id=HG003_chrY_T0001425;gene_id=HG003_chrY_G0000488;Parent=HG003_chrY_T0001425;transcript_name=HG003_chrY_T0001425;gene_name=CDY9P;ID=exon:HG003_chrY_T0001425:0;Name=CDY9P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19137328	19138216	.	-	.	source_gene_common_name=TAF9P2;source_gene=ENSG00000229302.1;alternative_source_transcripts=ENST00000454958.1;gene_id=HG003_chrY_G0000489;gene_biotype=processed_pseudogene;gene_name=TAF9P2;gene_sources=liftoff;ID=HG003_chrY_G0000489;Name=TAF9P2
HG003_chrY	CAT	transcript	19137328	19138216	1000	-	.	source_transcript=ENST00000454958.1;source_transcript_name=TAF9P2-201;source_gene=ENSG00000229302.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229302.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000454958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454958.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAF9P2;alternative_source_transcripts=ENST00000454958.1;transcript_id=HG003_chrY_T0001426;gene_id=HG003_chrY_G0000489;Parent=HG003_chrY_G0000489;transcript_name=HG003_chrY_T0001426;gene_name=TAF9P2;ID=HG003_chrY_T0001426;Name=TAF9P2
HG003_chrY	CAT	exon	19137328	19137369	.	-	.	source_transcript=ENST00000454958.1;source_transcript_name=TAF9P2-201;source_gene=ENSG00000229302.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229302.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000454958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAF9P2;alternative_source_transcripts=ENST00000454958.1;transcript_id=HG003_chrY_T0001426;gene_id=HG003_chrY_G0000489;Parent=HG003_chrY_T0001426;transcript_name=HG003_chrY_T0001426;gene_name=TAF9P2;ID=exon:HG003_chrY_T0001426:0;Name=TAF9P2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19137370	19137743	.	-	.	source_transcript=ENST00000454958.1;source_transcript_name=TAF9P2-201;source_gene=ENSG00000229302.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229302.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000454958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAF9P2;alternative_source_transcripts=ENST00000454958.1;transcript_id=HG003_chrY_T0001426;gene_id=HG003_chrY_G0000489;Parent=HG003_chrY_T0001426;transcript_name=HG003_chrY_T0001426;gene_name=TAF9P2;ID=intron:HG003_chrY_T0001426:0;Name=TAF9P2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19137744	19138216	.	-	.	source_transcript=ENST00000454958.1;source_transcript_name=TAF9P2-201;source_gene=ENSG00000229302.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229302.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000454958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TAF9P2;alternative_source_transcripts=ENST00000454958.1;transcript_id=HG003_chrY_T0001426;gene_id=HG003_chrY_G0000489;Parent=HG003_chrY_T0001426;transcript_name=HG003_chrY_T0001426;gene_name=TAF9P2;ID=exon:HG003_chrY_T0001426:1;Name=TAF9P2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19140897	19145470	.	+	.	source_gene_common_name=CLUHP1;source_gene=ENSG00000238191.3;gene_id=HG003_chrY_G0000490;gene_biotype=unprocessed_pseudogene;gene_name=CLUHP1;gene_sources=liftoff;ID=HG003_chrY_G0000490;Name=CLUHP1
HG003_chrY	CAT	transcript	19140897	19145470	1000	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_G0000490;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=HG003_chrY_T0001427;Name=CLUHP1
HG003_chrY	CAT	exon	19140897	19141082	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=exon:HG003_chrY_T0001427:0;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19141083	19141967	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=intron:HG003_chrY_T0001427:0;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19141968	19142108	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=exon:HG003_chrY_T0001427:1;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19142109	19142290	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=intron:HG003_chrY_T0001427:1;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19142291	19142406	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=exon:HG003_chrY_T0001427:2;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19142407	19142483	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=intron:HG003_chrY_T0001427:2;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19142484	19142637	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=exon:HG003_chrY_T0001427:3;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19142638	19142740	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=intron:HG003_chrY_T0001427:3;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19142741	19142865	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=exon:HG003_chrY_T0001427:4;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19142866	19143509	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=intron:HG003_chrY_T0001427:4;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19143510	19143582	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=exon:HG003_chrY_T0001427:5;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19143583	19143832	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=intron:HG003_chrY_T0001427:5;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19143833	19143924	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=exon:HG003_chrY_T0001427:6;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19143925	19144613	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=intron:HG003_chrY_T0001427:6;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19144614	19144712	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=exon:HG003_chrY_T0001427:7;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19144713	19145189	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=intron:HG003_chrY_T0001427:7;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19145190	19145269	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=exon:HG003_chrY_T0001427:8;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19145270	19145346	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=intron:HG003_chrY_T0001427:8;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19145347	19145470	.	+	.	source_transcript=ENST00000435012.1;source_transcript_name=CLUHP1-201;source_gene=ENSG00000238191.3;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238191.3;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435012.1;transcript_score=299.916;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CLUHP1;transcript_id=HG003_chrY_T0001427;gene_id=HG003_chrY_G0000490;Parent=HG003_chrY_T0001427;transcript_name=HG003_chrY_T0001427;gene_name=CLUHP1;ID=exon:HG003_chrY_T0001427:9;Name=CLUHP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19186777	19213446	.	+	.	source_gene_common_name=FAM224A;source_gene=ENSG00000233522.2;alternative_source_transcripts=ENST00000776205.1;gene_id=HG003_chrY_G0000491;gene_biotype=lncRNA;gene_name=FAM224A;gene_sources=liftoff;ID=HG003_chrY_G0000491;Name=FAM224A
HG003_chrY	CAT	transcript	19186777	19191611	1000	+	.	source_transcript=ENST00000776205.1;source_transcript_name=FAM224A-211;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776205.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776205.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776205.1;transcript_id=HG003_chrY_T0001428;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001428;gene_name=FAM224A;ID=HG003_chrY_T0001428;Name=FAM224A
HG003_chrY	CAT	exon	19186777	19187071	.	+	.	source_transcript=ENST00000776205.1;source_transcript_name=FAM224A-211;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776205.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776205.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776205.1;transcript_id=HG003_chrY_T0001428;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001428;transcript_name=HG003_chrY_T0001428;gene_name=FAM224A;ID=exon:HG003_chrY_T0001428:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187261	.	+	.	source_transcript=ENST00000776205.1;source_transcript_name=FAM224A-211;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776205.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776205.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776205.1;transcript_id=HG003_chrY_T0001428;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001428;transcript_name=HG003_chrY_T0001428;gene_name=FAM224A;ID=intron:HG003_chrY_T0001428:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187262	19187421	.	+	.	source_transcript=ENST00000776205.1;source_transcript_name=FAM224A-211;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776205.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776205.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776205.1;transcript_id=HG003_chrY_T0001428;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001428;transcript_name=HG003_chrY_T0001428;gene_name=FAM224A;ID=exon:HG003_chrY_T0001428:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000776205.1;source_transcript_name=FAM224A-211;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776205.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776205.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776205.1;transcript_id=HG003_chrY_T0001428;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001428;transcript_name=HG003_chrY_T0001428;gene_name=FAM224A;ID=intron:HG003_chrY_T0001428:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776205.1;source_transcript_name=FAM224A-211;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776205.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776205.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776205.1;transcript_id=HG003_chrY_T0001428;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001428;transcript_name=HG003_chrY_T0001428;gene_name=FAM224A;ID=exon:HG003_chrY_T0001428:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776205.1;source_transcript_name=FAM224A-211;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776205.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776205.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776205.1;transcript_id=HG003_chrY_T0001428;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001428;transcript_name=HG003_chrY_T0001428;gene_name=FAM224A;ID=intron:HG003_chrY_T0001428:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191611	.	+	.	source_transcript=ENST00000776205.1;source_transcript_name=FAM224A-211;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776205.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776205.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776205.1;transcript_id=HG003_chrY_T0001428;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001428;transcript_name=HG003_chrY_T0001428;gene_name=FAM224A;ID=exon:HG003_chrY_T0001428:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186860	19191581	1000	+	.	source_transcript=ENST00000776207.1;source_transcript_name=FAM224A-213;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776207.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776207.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776207.1;transcript_id=HG003_chrY_T0001429;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001429;gene_name=FAM224A;ID=HG003_chrY_T0001429;Name=FAM224A
HG003_chrY	CAT	exon	19186860	19187071	.	+	.	source_transcript=ENST00000776207.1;source_transcript_name=FAM224A-213;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776207.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776207.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776207.1;transcript_id=HG003_chrY_T0001429;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001429;transcript_name=HG003_chrY_T0001429;gene_name=FAM224A;ID=exon:HG003_chrY_T0001429:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187187	.	+	.	source_transcript=ENST00000776207.1;source_transcript_name=FAM224A-213;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776207.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776207.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776207.1;transcript_id=HG003_chrY_T0001429;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001429;transcript_name=HG003_chrY_T0001429;gene_name=FAM224A;ID=intron:HG003_chrY_T0001429:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187188	19187421	.	+	.	source_transcript=ENST00000776207.1;source_transcript_name=FAM224A-213;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776207.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776207.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776207.1;transcript_id=HG003_chrY_T0001429;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001429;transcript_name=HG003_chrY_T0001429;gene_name=FAM224A;ID=exon:HG003_chrY_T0001429:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000776207.1;source_transcript_name=FAM224A-213;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776207.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776207.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776207.1;transcript_id=HG003_chrY_T0001429;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001429;transcript_name=HG003_chrY_T0001429;gene_name=FAM224A;ID=intron:HG003_chrY_T0001429:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776207.1;source_transcript_name=FAM224A-213;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776207.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776207.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776207.1;transcript_id=HG003_chrY_T0001429;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001429;transcript_name=HG003_chrY_T0001429;gene_name=FAM224A;ID=exon:HG003_chrY_T0001429:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776207.1;source_transcript_name=FAM224A-213;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776207.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776207.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776207.1;transcript_id=HG003_chrY_T0001429;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001429;transcript_name=HG003_chrY_T0001429;gene_name=FAM224A;ID=intron:HG003_chrY_T0001429:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191581	.	+	.	source_transcript=ENST00000776207.1;source_transcript_name=FAM224A-213;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776207.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776207.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776207.1;transcript_id=HG003_chrY_T0001429;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001429;transcript_name=HG003_chrY_T0001429;gene_name=FAM224A;ID=exon:HG003_chrY_T0001429:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186872	19213457	1000	+	.	source_transcript=ENST00000776196.1;source_transcript_name=FAM224A-202;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776196.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776196.1;transcript_id=HG003_chrY_T0001430;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001430;gene_name=FAM224A;ID=HG003_chrY_T0001430;Name=FAM224A
HG003_chrY	CAT	exon	19186872	19187421	.	+	.	source_transcript=ENST00000776196.1;source_transcript_name=FAM224A-202;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776196.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776196.1;transcript_id=HG003_chrY_T0001430;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001430;transcript_name=HG003_chrY_T0001430;gene_name=FAM224A;ID=exon:HG003_chrY_T0001430:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000776196.1;source_transcript_name=FAM224A-202;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776196.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776196.1;transcript_id=HG003_chrY_T0001430;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001430;transcript_name=HG003_chrY_T0001430;gene_name=FAM224A;ID=intron:HG003_chrY_T0001430:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776196.1;source_transcript_name=FAM224A-202;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776196.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776196.1;transcript_id=HG003_chrY_T0001430;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001430;transcript_name=HG003_chrY_T0001430;gene_name=FAM224A;ID=exon:HG003_chrY_T0001430:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19212613	.	+	.	source_transcript=ENST00000776196.1;source_transcript_name=FAM224A-202;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776196.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776196.1;transcript_id=HG003_chrY_T0001430;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001430;transcript_name=HG003_chrY_T0001430;gene_name=FAM224A;ID=intron:HG003_chrY_T0001430:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212614	19212698	.	+	.	source_transcript=ENST00000776196.1;source_transcript_name=FAM224A-202;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776196.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776196.1;transcript_id=HG003_chrY_T0001430;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001430;transcript_name=HG003_chrY_T0001430;gene_name=FAM224A;ID=exon:HG003_chrY_T0001430:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212699	19212785	.	+	.	source_transcript=ENST00000776196.1;source_transcript_name=FAM224A-202;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776196.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776196.1;transcript_id=HG003_chrY_T0001430;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001430;transcript_name=HG003_chrY_T0001430;gene_name=FAM224A;ID=intron:HG003_chrY_T0001430:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212786	19213457	.	+	.	source_transcript=ENST00000776196.1;source_transcript_name=FAM224A-202;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776196.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776196.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776196.1;transcript_id=HG003_chrY_T0001430;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001430;transcript_name=HG003_chrY_T0001430;gene_name=FAM224A;ID=exon:HG003_chrY_T0001430:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186872	19191610	1000	+	.	source_transcript=ENST00000776206.1;source_transcript_name=FAM224A-212;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776206.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776206.1;transcript_id=HG003_chrY_T0001431;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001431;gene_name=FAM224A;ID=HG003_chrY_T0001431;Name=FAM224A
HG003_chrY	CAT	exon	19186872	19187421	.	+	.	source_transcript=ENST00000776206.1;source_transcript_name=FAM224A-212;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776206.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776206.1;transcript_id=HG003_chrY_T0001431;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001431;transcript_name=HG003_chrY_T0001431;gene_name=FAM224A;ID=exon:HG003_chrY_T0001431:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000776206.1;source_transcript_name=FAM224A-212;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776206.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776206.1;transcript_id=HG003_chrY_T0001431;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001431;transcript_name=HG003_chrY_T0001431;gene_name=FAM224A;ID=intron:HG003_chrY_T0001431:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776206.1;source_transcript_name=FAM224A-212;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776206.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776206.1;transcript_id=HG003_chrY_T0001431;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001431;transcript_name=HG003_chrY_T0001431;gene_name=FAM224A;ID=exon:HG003_chrY_T0001431:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776206.1;source_transcript_name=FAM224A-212;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776206.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776206.1;transcript_id=HG003_chrY_T0001431;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001431;transcript_name=HG003_chrY_T0001431;gene_name=FAM224A;ID=intron:HG003_chrY_T0001431:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191610	.	+	.	source_transcript=ENST00000776206.1;source_transcript_name=FAM224A-212;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776206.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776206.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776206.1;transcript_id=HG003_chrY_T0001431;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001431;transcript_name=HG003_chrY_T0001431;gene_name=FAM224A;ID=exon:HG003_chrY_T0001431:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186879	19191594	1000	+	.	source_transcript=ENST00000776208.1;source_transcript_name=FAM224A-214;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776208.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776208.1;transcript_id=HG003_chrY_T0001432;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001432;gene_name=FAM224A;ID=HG003_chrY_T0001432;Name=FAM224A
HG003_chrY	CAT	exon	19186879	19187071	.	+	.	source_transcript=ENST00000776208.1;source_transcript_name=FAM224A-214;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776208.1;transcript_id=HG003_chrY_T0001432;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001432;transcript_name=HG003_chrY_T0001432;gene_name=FAM224A;ID=exon:HG003_chrY_T0001432:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187261	.	+	.	source_transcript=ENST00000776208.1;source_transcript_name=FAM224A-214;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776208.1;transcript_id=HG003_chrY_T0001432;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001432;transcript_name=HG003_chrY_T0001432;gene_name=FAM224A;ID=intron:HG003_chrY_T0001432:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187262	19187421	.	+	.	source_transcript=ENST00000776208.1;source_transcript_name=FAM224A-214;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776208.1;transcript_id=HG003_chrY_T0001432;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001432;transcript_name=HG003_chrY_T0001432;gene_name=FAM224A;ID=exon:HG003_chrY_T0001432:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189944	.	+	.	source_transcript=ENST00000776208.1;source_transcript_name=FAM224A-214;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776208.1;transcript_id=HG003_chrY_T0001432;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001432;transcript_name=HG003_chrY_T0001432;gene_name=FAM224A;ID=intron:HG003_chrY_T0001432:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189945	19190034	.	+	.	source_transcript=ENST00000776208.1;source_transcript_name=FAM224A-214;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776208.1;transcript_id=HG003_chrY_T0001432;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001432;transcript_name=HG003_chrY_T0001432;gene_name=FAM224A;ID=exon:HG003_chrY_T0001432:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776208.1;source_transcript_name=FAM224A-214;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776208.1;transcript_id=HG003_chrY_T0001432;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001432;transcript_name=HG003_chrY_T0001432;gene_name=FAM224A;ID=intron:HG003_chrY_T0001432:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191594	.	+	.	source_transcript=ENST00000776208.1;source_transcript_name=FAM224A-214;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776208.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776208.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776208.1;transcript_id=HG003_chrY_T0001432;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001432;transcript_name=HG003_chrY_T0001432;gene_name=FAM224A;ID=exon:HG003_chrY_T0001432:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186881	19191555	1000	+	.	source_transcript=ENST00000776212.1;source_transcript_name=FAM224A-218;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776212.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776212.1;transcript_id=HG003_chrY_T0001433;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001433;gene_name=FAM224A;ID=HG003_chrY_T0001433;Name=FAM224A
HG003_chrY	CAT	exon	19186881	19187071	.	+	.	source_transcript=ENST00000776212.1;source_transcript_name=FAM224A-218;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776212.1;transcript_id=HG003_chrY_T0001433;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001433;transcript_name=HG003_chrY_T0001433;gene_name=FAM224A;ID=exon:HG003_chrY_T0001433:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187261	.	+	.	source_transcript=ENST00000776212.1;source_transcript_name=FAM224A-218;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776212.1;transcript_id=HG003_chrY_T0001433;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001433;transcript_name=HG003_chrY_T0001433;gene_name=FAM224A;ID=intron:HG003_chrY_T0001433:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187262	19187421	.	+	.	source_transcript=ENST00000776212.1;source_transcript_name=FAM224A-218;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776212.1;transcript_id=HG003_chrY_T0001433;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001433;transcript_name=HG003_chrY_T0001433;gene_name=FAM224A;ID=exon:HG003_chrY_T0001433:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19188964	.	+	.	source_transcript=ENST00000776212.1;source_transcript_name=FAM224A-218;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776212.1;transcript_id=HG003_chrY_T0001433;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001433;transcript_name=HG003_chrY_T0001433;gene_name=FAM224A;ID=intron:HG003_chrY_T0001433:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19188965	19190034	.	+	.	source_transcript=ENST00000776212.1;source_transcript_name=FAM224A-218;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776212.1;transcript_id=HG003_chrY_T0001433;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001433;transcript_name=HG003_chrY_T0001433;gene_name=FAM224A;ID=exon:HG003_chrY_T0001433:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776212.1;source_transcript_name=FAM224A-218;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776212.1;transcript_id=HG003_chrY_T0001433;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001433;transcript_name=HG003_chrY_T0001433;gene_name=FAM224A;ID=intron:HG003_chrY_T0001433:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191555	.	+	.	source_transcript=ENST00000776212.1;source_transcript_name=FAM224A-218;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776212.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776212.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776212.1;transcript_id=HG003_chrY_T0001433;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001433;transcript_name=HG003_chrY_T0001433;gene_name=FAM224A;ID=exon:HG003_chrY_T0001433:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186883	19213446	1000	+	.	source_transcript=ENST00000776197.1;source_transcript_name=FAM224A-203;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776197.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776197.1;transcript_id=HG003_chrY_T0001434;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001434;gene_name=FAM224A;ID=HG003_chrY_T0001434;Name=FAM224A
HG003_chrY	CAT	exon	19186883	19187071	.	+	.	source_transcript=ENST00000776197.1;source_transcript_name=FAM224A-203;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776197.1;transcript_id=HG003_chrY_T0001434;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001434;transcript_name=HG003_chrY_T0001434;gene_name=FAM224A;ID=exon:HG003_chrY_T0001434:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187261	.	+	.	source_transcript=ENST00000776197.1;source_transcript_name=FAM224A-203;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776197.1;transcript_id=HG003_chrY_T0001434;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001434;transcript_name=HG003_chrY_T0001434;gene_name=FAM224A;ID=intron:HG003_chrY_T0001434:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187262	19187421	.	+	.	source_transcript=ENST00000776197.1;source_transcript_name=FAM224A-203;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776197.1;transcript_id=HG003_chrY_T0001434;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001434;transcript_name=HG003_chrY_T0001434;gene_name=FAM224A;ID=exon:HG003_chrY_T0001434:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000776197.1;source_transcript_name=FAM224A-203;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776197.1;transcript_id=HG003_chrY_T0001434;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001434;transcript_name=HG003_chrY_T0001434;gene_name=FAM224A;ID=intron:HG003_chrY_T0001434:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776197.1;source_transcript_name=FAM224A-203;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776197.1;transcript_id=HG003_chrY_T0001434;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001434;transcript_name=HG003_chrY_T0001434;gene_name=FAM224A;ID=exon:HG003_chrY_T0001434:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19212613	.	+	.	source_transcript=ENST00000776197.1;source_transcript_name=FAM224A-203;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776197.1;transcript_id=HG003_chrY_T0001434;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001434;transcript_name=HG003_chrY_T0001434;gene_name=FAM224A;ID=intron:HG003_chrY_T0001434:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212614	19212698	.	+	.	source_transcript=ENST00000776197.1;source_transcript_name=FAM224A-203;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776197.1;transcript_id=HG003_chrY_T0001434;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001434;transcript_name=HG003_chrY_T0001434;gene_name=FAM224A;ID=exon:HG003_chrY_T0001434:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212699	19212785	.	+	.	source_transcript=ENST00000776197.1;source_transcript_name=FAM224A-203;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776197.1;transcript_id=HG003_chrY_T0001434;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001434;transcript_name=HG003_chrY_T0001434;gene_name=FAM224A;ID=intron:HG003_chrY_T0001434:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212786	19212912	.	+	.	source_transcript=ENST00000776197.1;source_transcript_name=FAM224A-203;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776197.1;transcript_id=HG003_chrY_T0001434;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001434;transcript_name=HG003_chrY_T0001434;gene_name=FAM224A;ID=exon:HG003_chrY_T0001434:4;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212913	19213386	.	+	.	source_transcript=ENST00000776197.1;source_transcript_name=FAM224A-203;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776197.1;transcript_id=HG003_chrY_T0001434;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001434;transcript_name=HG003_chrY_T0001434;gene_name=FAM224A;ID=intron:HG003_chrY_T0001434:4;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19213387	19213446	.	+	.	source_transcript=ENST00000776197.1;source_transcript_name=FAM224A-203;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776197.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776197.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776197.1;transcript_id=HG003_chrY_T0001434;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001434;transcript_name=HG003_chrY_T0001434;gene_name=FAM224A;ID=exon:HG003_chrY_T0001434:5;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186883	19213172	1000	+	.	source_transcript=ENST00000776203.1;source_transcript_name=FAM224A-209;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776203.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776203.1;transcript_id=HG003_chrY_T0001435;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001435;gene_name=FAM224A;ID=HG003_chrY_T0001435;Name=FAM224A
HG003_chrY	CAT	exon	19186883	19187071	.	+	.	source_transcript=ENST00000776203.1;source_transcript_name=FAM224A-209;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776203.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776203.1;transcript_id=HG003_chrY_T0001435;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001435;transcript_name=HG003_chrY_T0001435;gene_name=FAM224A;ID=exon:HG003_chrY_T0001435:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19212613	.	+	.	source_transcript=ENST00000776203.1;source_transcript_name=FAM224A-209;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776203.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776203.1;transcript_id=HG003_chrY_T0001435;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001435;transcript_name=HG003_chrY_T0001435;gene_name=FAM224A;ID=intron:HG003_chrY_T0001435:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212614	19212698	.	+	.	source_transcript=ENST00000776203.1;source_transcript_name=FAM224A-209;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776203.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776203.1;transcript_id=HG003_chrY_T0001435;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001435;transcript_name=HG003_chrY_T0001435;gene_name=FAM224A;ID=exon:HG003_chrY_T0001435:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212699	19212785	.	+	.	source_transcript=ENST00000776203.1;source_transcript_name=FAM224A-209;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776203.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776203.1;transcript_id=HG003_chrY_T0001435;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001435;transcript_name=HG003_chrY_T0001435;gene_name=FAM224A;ID=intron:HG003_chrY_T0001435:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212786	19213172	.	+	.	source_transcript=ENST00000776203.1;source_transcript_name=FAM224A-209;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776203.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776203.1;transcript_id=HG003_chrY_T0001435;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001435;transcript_name=HG003_chrY_T0001435;gene_name=FAM224A;ID=exon:HG003_chrY_T0001435:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186883	19191580	1000	+	.	source_transcript=ENST00000776209.1;source_transcript_name=FAM224A-215;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776209.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776209.1;transcript_id=HG003_chrY_T0001436;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001436;gene_name=FAM224A;ID=HG003_chrY_T0001436;Name=FAM224A
HG003_chrY	CAT	exon	19186883	19187071	.	+	.	source_transcript=ENST00000776209.1;source_transcript_name=FAM224A-215;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776209.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776209.1;transcript_id=HG003_chrY_T0001436;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001436;transcript_name=HG003_chrY_T0001436;gene_name=FAM224A;ID=exon:HG003_chrY_T0001436:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187285	.	+	.	source_transcript=ENST00000776209.1;source_transcript_name=FAM224A-215;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776209.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776209.1;transcript_id=HG003_chrY_T0001436;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001436;transcript_name=HG003_chrY_T0001436;gene_name=FAM224A;ID=intron:HG003_chrY_T0001436:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187286	19187421	.	+	.	source_transcript=ENST00000776209.1;source_transcript_name=FAM224A-215;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776209.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776209.1;transcript_id=HG003_chrY_T0001436;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001436;transcript_name=HG003_chrY_T0001436;gene_name=FAM224A;ID=exon:HG003_chrY_T0001436:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000776209.1;source_transcript_name=FAM224A-215;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776209.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776209.1;transcript_id=HG003_chrY_T0001436;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001436;transcript_name=HG003_chrY_T0001436;gene_name=FAM224A;ID=intron:HG003_chrY_T0001436:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776209.1;source_transcript_name=FAM224A-215;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776209.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776209.1;transcript_id=HG003_chrY_T0001436;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001436;transcript_name=HG003_chrY_T0001436;gene_name=FAM224A;ID=exon:HG003_chrY_T0001436:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776209.1;source_transcript_name=FAM224A-215;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776209.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776209.1;transcript_id=HG003_chrY_T0001436;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001436;transcript_name=HG003_chrY_T0001436;gene_name=FAM224A;ID=intron:HG003_chrY_T0001436:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191580	.	+	.	source_transcript=ENST00000776209.1;source_transcript_name=FAM224A-215;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776209.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776209.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776209.1;transcript_id=HG003_chrY_T0001436;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001436;transcript_name=HG003_chrY_T0001436;gene_name=FAM224A;ID=exon:HG003_chrY_T0001436:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186887	19213444	1000	+	.	source_transcript=ENST00000776198.1;source_transcript_name=FAM224A-204;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776198.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776198.1;transcript_id=HG003_chrY_T0001437;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001437;gene_name=FAM224A;ID=HG003_chrY_T0001437;Name=FAM224A
HG003_chrY	CAT	exon	19186887	19187071	.	+	.	source_transcript=ENST00000776198.1;source_transcript_name=FAM224A-204;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776198.1;transcript_id=HG003_chrY_T0001437;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001437;transcript_name=HG003_chrY_T0001437;gene_name=FAM224A;ID=exon:HG003_chrY_T0001437:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187261	.	+	.	source_transcript=ENST00000776198.1;source_transcript_name=FAM224A-204;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776198.1;transcript_id=HG003_chrY_T0001437;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001437;transcript_name=HG003_chrY_T0001437;gene_name=FAM224A;ID=intron:HG003_chrY_T0001437:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187262	19187421	.	+	.	source_transcript=ENST00000776198.1;source_transcript_name=FAM224A-204;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776198.1;transcript_id=HG003_chrY_T0001437;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001437;transcript_name=HG003_chrY_T0001437;gene_name=FAM224A;ID=exon:HG003_chrY_T0001437:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000776198.1;source_transcript_name=FAM224A-204;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776198.1;transcript_id=HG003_chrY_T0001437;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001437;transcript_name=HG003_chrY_T0001437;gene_name=FAM224A;ID=intron:HG003_chrY_T0001437:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776198.1;source_transcript_name=FAM224A-204;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776198.1;transcript_id=HG003_chrY_T0001437;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001437;transcript_name=HG003_chrY_T0001437;gene_name=FAM224A;ID=exon:HG003_chrY_T0001437:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19212613	.	+	.	source_transcript=ENST00000776198.1;source_transcript_name=FAM224A-204;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776198.1;transcript_id=HG003_chrY_T0001437;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001437;transcript_name=HG003_chrY_T0001437;gene_name=FAM224A;ID=intron:HG003_chrY_T0001437:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212614	19212698	.	+	.	source_transcript=ENST00000776198.1;source_transcript_name=FAM224A-204;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776198.1;transcript_id=HG003_chrY_T0001437;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001437;transcript_name=HG003_chrY_T0001437;gene_name=FAM224A;ID=exon:HG003_chrY_T0001437:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212699	19212785	.	+	.	source_transcript=ENST00000776198.1;source_transcript_name=FAM224A-204;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776198.1;transcript_id=HG003_chrY_T0001437;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001437;transcript_name=HG003_chrY_T0001437;gene_name=FAM224A;ID=intron:HG003_chrY_T0001437:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212786	19213444	.	+	.	source_transcript=ENST00000776198.1;source_transcript_name=FAM224A-204;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776198.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776198.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776198.1;transcript_id=HG003_chrY_T0001437;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001437;transcript_name=HG003_chrY_T0001437;gene_name=FAM224A;ID=exon:HG003_chrY_T0001437:4;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186887	19213442	1000	+	.	source_transcript=ENST00000776199.1;source_transcript_name=FAM224A-205;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776199.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776199.1;transcript_id=HG003_chrY_T0001438;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001438;gene_name=FAM224A;ID=HG003_chrY_T0001438;Name=FAM224A
HG003_chrY	CAT	exon	19186887	19187071	.	+	.	source_transcript=ENST00000776199.1;source_transcript_name=FAM224A-205;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776199.1;transcript_id=HG003_chrY_T0001438;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001438;transcript_name=HG003_chrY_T0001438;gene_name=FAM224A;ID=exon:HG003_chrY_T0001438:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187261	.	+	.	source_transcript=ENST00000776199.1;source_transcript_name=FAM224A-205;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776199.1;transcript_id=HG003_chrY_T0001438;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001438;transcript_name=HG003_chrY_T0001438;gene_name=FAM224A;ID=intron:HG003_chrY_T0001438:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187262	19187421	.	+	.	source_transcript=ENST00000776199.1;source_transcript_name=FAM224A-205;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776199.1;transcript_id=HG003_chrY_T0001438;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001438;transcript_name=HG003_chrY_T0001438;gene_name=FAM224A;ID=exon:HG003_chrY_T0001438:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189944	.	+	.	source_transcript=ENST00000776199.1;source_transcript_name=FAM224A-205;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776199.1;transcript_id=HG003_chrY_T0001438;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001438;transcript_name=HG003_chrY_T0001438;gene_name=FAM224A;ID=intron:HG003_chrY_T0001438:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189945	19190034	.	+	.	source_transcript=ENST00000776199.1;source_transcript_name=FAM224A-205;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776199.1;transcript_id=HG003_chrY_T0001438;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001438;transcript_name=HG003_chrY_T0001438;gene_name=FAM224A;ID=exon:HG003_chrY_T0001438:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19212613	.	+	.	source_transcript=ENST00000776199.1;source_transcript_name=FAM224A-205;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776199.1;transcript_id=HG003_chrY_T0001438;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001438;transcript_name=HG003_chrY_T0001438;gene_name=FAM224A;ID=intron:HG003_chrY_T0001438:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212614	19212698	.	+	.	source_transcript=ENST00000776199.1;source_transcript_name=FAM224A-205;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776199.1;transcript_id=HG003_chrY_T0001438;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001438;transcript_name=HG003_chrY_T0001438;gene_name=FAM224A;ID=exon:HG003_chrY_T0001438:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212699	19212785	.	+	.	source_transcript=ENST00000776199.1;source_transcript_name=FAM224A-205;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776199.1;transcript_id=HG003_chrY_T0001438;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001438;transcript_name=HG003_chrY_T0001438;gene_name=FAM224A;ID=intron:HG003_chrY_T0001438:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212786	19212946	.	+	.	source_transcript=ENST00000776199.1;source_transcript_name=FAM224A-205;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776199.1;transcript_id=HG003_chrY_T0001438;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001438;transcript_name=HG003_chrY_T0001438;gene_name=FAM224A;ID=exon:HG003_chrY_T0001438:4;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212947	19213386	.	+	.	source_transcript=ENST00000776199.1;source_transcript_name=FAM224A-205;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776199.1;transcript_id=HG003_chrY_T0001438;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001438;transcript_name=HG003_chrY_T0001438;gene_name=FAM224A;ID=intron:HG003_chrY_T0001438:4;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19213387	19213442	.	+	.	source_transcript=ENST00000776199.1;source_transcript_name=FAM224A-205;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776199.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776199.1;transcript_id=HG003_chrY_T0001438;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001438;transcript_name=HG003_chrY_T0001438;gene_name=FAM224A;ID=exon:HG003_chrY_T0001438:5;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186892	19213444	1000	+	.	source_transcript=ENST00000776200.1;source_transcript_name=FAM224A-206;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776200.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776200.1;transcript_id=HG003_chrY_T0001439;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001439;gene_name=FAM224A;ID=HG003_chrY_T0001439;Name=FAM224A
HG003_chrY	CAT	exon	19186892	19187071	.	+	.	source_transcript=ENST00000776200.1;source_transcript_name=FAM224A-206;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776200.1;transcript_id=HG003_chrY_T0001439;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001439;transcript_name=HG003_chrY_T0001439;gene_name=FAM224A;ID=exon:HG003_chrY_T0001439:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187261	.	+	.	source_transcript=ENST00000776200.1;source_transcript_name=FAM224A-206;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776200.1;transcript_id=HG003_chrY_T0001439;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001439;transcript_name=HG003_chrY_T0001439;gene_name=FAM224A;ID=intron:HG003_chrY_T0001439:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187262	19187421	.	+	.	source_transcript=ENST00000776200.1;source_transcript_name=FAM224A-206;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776200.1;transcript_id=HG003_chrY_T0001439;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001439;transcript_name=HG003_chrY_T0001439;gene_name=FAM224A;ID=exon:HG003_chrY_T0001439:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000776200.1;source_transcript_name=FAM224A-206;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776200.1;transcript_id=HG003_chrY_T0001439;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001439;transcript_name=HG003_chrY_T0001439;gene_name=FAM224A;ID=intron:HG003_chrY_T0001439:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776200.1;source_transcript_name=FAM224A-206;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776200.1;transcript_id=HG003_chrY_T0001439;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001439;transcript_name=HG003_chrY_T0001439;gene_name=FAM224A;ID=exon:HG003_chrY_T0001439:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776200.1;source_transcript_name=FAM224A-206;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776200.1;transcript_id=HG003_chrY_T0001439;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001439;transcript_name=HG003_chrY_T0001439;gene_name=FAM224A;ID=intron:HG003_chrY_T0001439:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191499	.	+	.	source_transcript=ENST00000776200.1;source_transcript_name=FAM224A-206;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776200.1;transcript_id=HG003_chrY_T0001439;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001439;transcript_name=HG003_chrY_T0001439;gene_name=FAM224A;ID=exon:HG003_chrY_T0001439:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19191500	19212613	.	+	.	source_transcript=ENST00000776200.1;source_transcript_name=FAM224A-206;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776200.1;transcript_id=HG003_chrY_T0001439;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001439;transcript_name=HG003_chrY_T0001439;gene_name=FAM224A;ID=intron:HG003_chrY_T0001439:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212614	19212698	.	+	.	source_transcript=ENST00000776200.1;source_transcript_name=FAM224A-206;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776200.1;transcript_id=HG003_chrY_T0001439;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001439;transcript_name=HG003_chrY_T0001439;gene_name=FAM224A;ID=exon:HG003_chrY_T0001439:4;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212699	19212785	.	+	.	source_transcript=ENST00000776200.1;source_transcript_name=FAM224A-206;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776200.1;transcript_id=HG003_chrY_T0001439;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001439;transcript_name=HG003_chrY_T0001439;gene_name=FAM224A;ID=intron:HG003_chrY_T0001439:4;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212786	19213444	.	+	.	source_transcript=ENST00000776200.1;source_transcript_name=FAM224A-206;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776200.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776200.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776200.1;transcript_id=HG003_chrY_T0001439;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001439;transcript_name=HG003_chrY_T0001439;gene_name=FAM224A;ID=exon:HG003_chrY_T0001439:5;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186926	19213442	1000	+	.	source_transcript=ENST00000776201.1;source_transcript_name=FAM224A-207;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776201.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776201.1;transcript_id=HG003_chrY_T0001440;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001440;gene_name=FAM224A;ID=HG003_chrY_T0001440;Name=FAM224A
HG003_chrY	CAT	exon	19186926	19187071	.	+	.	source_transcript=ENST00000776201.1;source_transcript_name=FAM224A-207;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776201.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776201.1;transcript_id=HG003_chrY_T0001440;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001440;transcript_name=HG003_chrY_T0001440;gene_name=FAM224A;ID=exon:HG003_chrY_T0001440:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187187	.	+	.	source_transcript=ENST00000776201.1;source_transcript_name=FAM224A-207;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776201.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776201.1;transcript_id=HG003_chrY_T0001440;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001440;transcript_name=HG003_chrY_T0001440;gene_name=FAM224A;ID=intron:HG003_chrY_T0001440:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187188	19187421	.	+	.	source_transcript=ENST00000776201.1;source_transcript_name=FAM224A-207;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776201.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776201.1;transcript_id=HG003_chrY_T0001440;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001440;transcript_name=HG003_chrY_T0001440;gene_name=FAM224A;ID=exon:HG003_chrY_T0001440:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000776201.1;source_transcript_name=FAM224A-207;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776201.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776201.1;transcript_id=HG003_chrY_T0001440;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001440;transcript_name=HG003_chrY_T0001440;gene_name=FAM224A;ID=intron:HG003_chrY_T0001440:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776201.1;source_transcript_name=FAM224A-207;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776201.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776201.1;transcript_id=HG003_chrY_T0001440;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001440;transcript_name=HG003_chrY_T0001440;gene_name=FAM224A;ID=exon:HG003_chrY_T0001440:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19212613	.	+	.	source_transcript=ENST00000776201.1;source_transcript_name=FAM224A-207;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776201.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776201.1;transcript_id=HG003_chrY_T0001440;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001440;transcript_name=HG003_chrY_T0001440;gene_name=FAM224A;ID=intron:HG003_chrY_T0001440:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212614	19212698	.	+	.	source_transcript=ENST00000776201.1;source_transcript_name=FAM224A-207;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776201.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776201.1;transcript_id=HG003_chrY_T0001440;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001440;transcript_name=HG003_chrY_T0001440;gene_name=FAM224A;ID=exon:HG003_chrY_T0001440:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212699	19212785	.	+	.	source_transcript=ENST00000776201.1;source_transcript_name=FAM224A-207;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776201.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776201.1;transcript_id=HG003_chrY_T0001440;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001440;transcript_name=HG003_chrY_T0001440;gene_name=FAM224A;ID=intron:HG003_chrY_T0001440:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212786	19213442	.	+	.	source_transcript=ENST00000776201.1;source_transcript_name=FAM224A-207;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776201.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776201.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776201.1;transcript_id=HG003_chrY_T0001440;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001440;transcript_name=HG003_chrY_T0001440;gene_name=FAM224A;ID=exon:HG003_chrY_T0001440:4;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186926	19191580	1000	+	.	source_transcript=ENST00000776210.1;source_transcript_name=FAM224A-216;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776210.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776210.1;transcript_id=HG003_chrY_T0001441;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001441;gene_name=FAM224A;ID=HG003_chrY_T0001441;Name=FAM224A
HG003_chrY	CAT	exon	19186926	19187071	.	+	.	source_transcript=ENST00000776210.1;source_transcript_name=FAM224A-216;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776210.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776210.1;transcript_id=HG003_chrY_T0001441;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001441;transcript_name=HG003_chrY_T0001441;gene_name=FAM224A;ID=exon:HG003_chrY_T0001441:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19189916	.	+	.	source_transcript=ENST00000776210.1;source_transcript_name=FAM224A-216;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776210.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776210.1;transcript_id=HG003_chrY_T0001441;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001441;transcript_name=HG003_chrY_T0001441;gene_name=FAM224A;ID=intron:HG003_chrY_T0001441:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776210.1;source_transcript_name=FAM224A-216;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776210.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776210.1;transcript_id=HG003_chrY_T0001441;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001441;transcript_name=HG003_chrY_T0001441;gene_name=FAM224A;ID=exon:HG003_chrY_T0001441:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776210.1;source_transcript_name=FAM224A-216;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776210.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776210.1;transcript_id=HG003_chrY_T0001441;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001441;transcript_name=HG003_chrY_T0001441;gene_name=FAM224A;ID=intron:HG003_chrY_T0001441:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191580	.	+	.	source_transcript=ENST00000776210.1;source_transcript_name=FAM224A-216;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776210.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776210.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776210.1;transcript_id=HG003_chrY_T0001441;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001441;transcript_name=HG003_chrY_T0001441;gene_name=FAM224A;ID=exon:HG003_chrY_T0001441:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186926	19191294	1000	+	.	source_transcript=ENST00000776216.1;source_transcript_name=FAM224A-222;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776216.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776216.1;transcript_id=HG003_chrY_T0001442;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001442;gene_name=FAM224A;ID=HG003_chrY_T0001442;Name=FAM224A
HG003_chrY	CAT	exon	19186926	19187071	.	+	.	source_transcript=ENST00000776216.1;source_transcript_name=FAM224A-222;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776216.1;transcript_id=HG003_chrY_T0001442;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001442;transcript_name=HG003_chrY_T0001442;gene_name=FAM224A;ID=exon:HG003_chrY_T0001442:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187261	.	+	.	source_transcript=ENST00000776216.1;source_transcript_name=FAM224A-222;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776216.1;transcript_id=HG003_chrY_T0001442;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001442;transcript_name=HG003_chrY_T0001442;gene_name=FAM224A;ID=intron:HG003_chrY_T0001442:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187262	19187421	.	+	.	source_transcript=ENST00000776216.1;source_transcript_name=FAM224A-222;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776216.1;transcript_id=HG003_chrY_T0001442;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001442;transcript_name=HG003_chrY_T0001442;gene_name=FAM224A;ID=exon:HG003_chrY_T0001442:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19190073	.	+	.	source_transcript=ENST00000776216.1;source_transcript_name=FAM224A-222;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776216.1;transcript_id=HG003_chrY_T0001442;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001442;transcript_name=HG003_chrY_T0001442;gene_name=FAM224A;ID=intron:HG003_chrY_T0001442:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19190074	19191294	.	+	.	source_transcript=ENST00000776216.1;source_transcript_name=FAM224A-222;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776216.1;transcript_id=HG003_chrY_T0001442;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001442;transcript_name=HG003_chrY_T0001442;gene_name=FAM224A;ID=exon:HG003_chrY_T0001442:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186931	19191580	1000	+	.	source_transcript=ENST00000776211.1;source_transcript_name=FAM224A-217;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776211.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776211.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776211.1;transcript_id=HG003_chrY_T0001443;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001443;gene_name=FAM224A;ID=HG003_chrY_T0001443;Name=FAM224A
HG003_chrY	CAT	exon	19186931	19187071	.	+	.	source_transcript=ENST00000776211.1;source_transcript_name=FAM224A-217;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776211.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776211.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776211.1;transcript_id=HG003_chrY_T0001443;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001443;transcript_name=HG003_chrY_T0001443;gene_name=FAM224A;ID=exon:HG003_chrY_T0001443:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187299	.	+	.	source_transcript=ENST00000776211.1;source_transcript_name=FAM224A-217;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776211.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776211.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776211.1;transcript_id=HG003_chrY_T0001443;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001443;transcript_name=HG003_chrY_T0001443;gene_name=FAM224A;ID=intron:HG003_chrY_T0001443:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187300	19187421	.	+	.	source_transcript=ENST00000776211.1;source_transcript_name=FAM224A-217;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776211.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776211.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776211.1;transcript_id=HG003_chrY_T0001443;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001443;transcript_name=HG003_chrY_T0001443;gene_name=FAM224A;ID=exon:HG003_chrY_T0001443:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000776211.1;source_transcript_name=FAM224A-217;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776211.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776211.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776211.1;transcript_id=HG003_chrY_T0001443;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001443;transcript_name=HG003_chrY_T0001443;gene_name=FAM224A;ID=intron:HG003_chrY_T0001443:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776211.1;source_transcript_name=FAM224A-217;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776211.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776211.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776211.1;transcript_id=HG003_chrY_T0001443;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001443;transcript_name=HG003_chrY_T0001443;gene_name=FAM224A;ID=exon:HG003_chrY_T0001443:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776211.1;source_transcript_name=FAM224A-217;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776211.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776211.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776211.1;transcript_id=HG003_chrY_T0001443;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001443;transcript_name=HG003_chrY_T0001443;gene_name=FAM224A;ID=intron:HG003_chrY_T0001443:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191580	.	+	.	source_transcript=ENST00000776211.1;source_transcript_name=FAM224A-217;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776211.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776211.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776211.1;transcript_id=HG003_chrY_T0001443;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001443;transcript_name=HG003_chrY_T0001443;gene_name=FAM224A;ID=exon:HG003_chrY_T0001443:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186932	19213442	1000	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=HG003_chrY_T0001444;Name=FAM224A
HG003_chrY	CAT	exon	19186932	19187071	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=exon:HG003_chrY_T0001444:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187261	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=intron:HG003_chrY_T0001444:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187262	19187421	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=exon:HG003_chrY_T0001444:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=intron:HG003_chrY_T0001444:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=exon:HG003_chrY_T0001444:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=intron:HG003_chrY_T0001444:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191499	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=exon:HG003_chrY_T0001444:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19191500	19212613	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=intron:HG003_chrY_T0001444:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212614	19212698	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=exon:HG003_chrY_T0001444:4;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212699	19212785	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=intron:HG003_chrY_T0001444:4;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212786	19212912	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=exon:HG003_chrY_T0001444:5;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212913	19213386	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=intron:HG003_chrY_T0001444:5;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19213387	19213442	.	+	.	source_transcript=ENST00000776202.1;source_transcript_name=FAM224A-208;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776202.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776202.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776202.1;transcript_id=HG003_chrY_T0001444;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001444;transcript_name=HG003_chrY_T0001444;gene_name=FAM224A;ID=exon:HG003_chrY_T0001444:6;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186932	19191553	1000	+	.	source_transcript=ENST00000776213.1;source_transcript_name=FAM224A-219;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776213.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776213.1;transcript_id=HG003_chrY_T0001445;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001445;gene_name=FAM224A;ID=HG003_chrY_T0001445;Name=FAM224A
HG003_chrY	CAT	exon	19186932	19187071	.	+	.	source_transcript=ENST00000776213.1;source_transcript_name=FAM224A-219;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776213.1;transcript_id=HG003_chrY_T0001445;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001445;transcript_name=HG003_chrY_T0001445;gene_name=FAM224A;ID=exon:HG003_chrY_T0001445:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187261	.	+	.	source_transcript=ENST00000776213.1;source_transcript_name=FAM224A-219;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776213.1;transcript_id=HG003_chrY_T0001445;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001445;transcript_name=HG003_chrY_T0001445;gene_name=FAM224A;ID=intron:HG003_chrY_T0001445:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187262	19187421	.	+	.	source_transcript=ENST00000776213.1;source_transcript_name=FAM224A-219;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776213.1;transcript_id=HG003_chrY_T0001445;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001445;transcript_name=HG003_chrY_T0001445;gene_name=FAM224A;ID=exon:HG003_chrY_T0001445:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19191369	.	+	.	source_transcript=ENST00000776213.1;source_transcript_name=FAM224A-219;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776213.1;transcript_id=HG003_chrY_T0001445;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001445;transcript_name=HG003_chrY_T0001445;gene_name=FAM224A;ID=intron:HG003_chrY_T0001445:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191553	.	+	.	source_transcript=ENST00000776213.1;source_transcript_name=FAM224A-219;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776213.1;transcript_id=HG003_chrY_T0001445;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001445;transcript_name=HG003_chrY_T0001445;gene_name=FAM224A;ID=exon:HG003_chrY_T0001445:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186933	19213169	1000	+	.	source_transcript=ENST00000776204.1;source_transcript_name=FAM224A-210;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776204.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776204.1;transcript_id=HG003_chrY_T0001446;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001446;gene_name=FAM224A;ID=HG003_chrY_T0001446;Name=FAM224A
HG003_chrY	CAT	exon	19186933	19187421	.	+	.	source_transcript=ENST00000776204.1;source_transcript_name=FAM224A-210;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776204.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776204.1;transcript_id=HG003_chrY_T0001446;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001446;transcript_name=HG003_chrY_T0001446;gene_name=FAM224A;ID=exon:HG003_chrY_T0001446:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000776204.1;source_transcript_name=FAM224A-210;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776204.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776204.1;transcript_id=HG003_chrY_T0001446;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001446;transcript_name=HG003_chrY_T0001446;gene_name=FAM224A;ID=intron:HG003_chrY_T0001446:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000776204.1;source_transcript_name=FAM224A-210;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776204.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776204.1;transcript_id=HG003_chrY_T0001446;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001446;transcript_name=HG003_chrY_T0001446;gene_name=FAM224A;ID=exon:HG003_chrY_T0001446:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776204.1;source_transcript_name=FAM224A-210;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776204.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776204.1;transcript_id=HG003_chrY_T0001446;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001446;transcript_name=HG003_chrY_T0001446;gene_name=FAM224A;ID=intron:HG003_chrY_T0001446:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191499	.	+	.	source_transcript=ENST00000776204.1;source_transcript_name=FAM224A-210;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776204.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776204.1;transcript_id=HG003_chrY_T0001446;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001446;transcript_name=HG003_chrY_T0001446;gene_name=FAM224A;ID=exon:HG003_chrY_T0001446:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19191500	19212613	.	+	.	source_transcript=ENST00000776204.1;source_transcript_name=FAM224A-210;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776204.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776204.1;transcript_id=HG003_chrY_T0001446;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001446;transcript_name=HG003_chrY_T0001446;gene_name=FAM224A;ID=intron:HG003_chrY_T0001446:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212614	19212698	.	+	.	source_transcript=ENST00000776204.1;source_transcript_name=FAM224A-210;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776204.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776204.1;transcript_id=HG003_chrY_T0001446;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001446;transcript_name=HG003_chrY_T0001446;gene_name=FAM224A;ID=exon:HG003_chrY_T0001446:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212699	19212785	.	+	.	source_transcript=ENST00000776204.1;source_transcript_name=FAM224A-210;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776204.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776204.1;transcript_id=HG003_chrY_T0001446;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001446;transcript_name=HG003_chrY_T0001446;gene_name=FAM224A;ID=intron:HG003_chrY_T0001446:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212786	19213169	.	+	.	source_transcript=ENST00000776204.1;source_transcript_name=FAM224A-210;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776204.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776204.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776204.1;transcript_id=HG003_chrY_T0001446;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001446;transcript_name=HG003_chrY_T0001446;gene_name=FAM224A;ID=exon:HG003_chrY_T0001446:4;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186969	19191580	1000	+	.	source_transcript=ENST00000776214.1;source_transcript_name=FAM224A-220;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776214.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776214.1;transcript_id=HG003_chrY_T0001447;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001447;gene_name=FAM224A;ID=HG003_chrY_T0001447;Name=FAM224A
HG003_chrY	CAT	exon	19186969	19187071	.	+	.	source_transcript=ENST00000776214.1;source_transcript_name=FAM224A-220;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776214.1;transcript_id=HG003_chrY_T0001447;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001447;transcript_name=HG003_chrY_T0001447;gene_name=FAM224A;ID=exon:HG003_chrY_T0001447:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187072	19187187	.	+	.	source_transcript=ENST00000776214.1;source_transcript_name=FAM224A-220;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776214.1;transcript_id=HG003_chrY_T0001447;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001447;transcript_name=HG003_chrY_T0001447;gene_name=FAM224A;ID=intron:HG003_chrY_T0001447:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19187188	19187421	.	+	.	source_transcript=ENST00000776214.1;source_transcript_name=FAM224A-220;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776214.1;transcript_id=HG003_chrY_T0001447;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001447;transcript_name=HG003_chrY_T0001447;gene_name=FAM224A;ID=exon:HG003_chrY_T0001447:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189944	.	+	.	source_transcript=ENST00000776214.1;source_transcript_name=FAM224A-220;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776214.1;transcript_id=HG003_chrY_T0001447;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001447;transcript_name=HG003_chrY_T0001447;gene_name=FAM224A;ID=intron:HG003_chrY_T0001447:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189945	19190034	.	+	.	source_transcript=ENST00000776214.1;source_transcript_name=FAM224A-220;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776214.1;transcript_id=HG003_chrY_T0001447;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001447;transcript_name=HG003_chrY_T0001447;gene_name=FAM224A;ID=exon:HG003_chrY_T0001447:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776214.1;source_transcript_name=FAM224A-220;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776214.1;transcript_id=HG003_chrY_T0001447;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001447;transcript_name=HG003_chrY_T0001447;gene_name=FAM224A;ID=intron:HG003_chrY_T0001447:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191580	.	+	.	source_transcript=ENST00000776214.1;source_transcript_name=FAM224A-220;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776214.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776214.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776214.1;transcript_id=HG003_chrY_T0001447;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001447;transcript_name=HG003_chrY_T0001447;gene_name=FAM224A;ID=exon:HG003_chrY_T0001447:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19186983	19213940	1000	+	.	source_transcript=ENST00000419557.1;source_transcript_name=FAM224A-201;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419557.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419557.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000419557.1;transcript_id=HG003_chrY_T0001448;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001448;gene_name=FAM224A;ID=HG003_chrY_T0001448;Name=FAM224A
HG003_chrY	CAT	exon	19186983	19187421	.	+	.	source_transcript=ENST00000419557.1;source_transcript_name=FAM224A-201;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419557.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419557.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000419557.1;transcript_id=HG003_chrY_T0001448;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001448;transcript_name=HG003_chrY_T0001448;gene_name=FAM224A;ID=exon:HG003_chrY_T0001448:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189916	.	+	.	source_transcript=ENST00000419557.1;source_transcript_name=FAM224A-201;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419557.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419557.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000419557.1;transcript_id=HG003_chrY_T0001448;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001448;transcript_name=HG003_chrY_T0001448;gene_name=FAM224A;ID=intron:HG003_chrY_T0001448:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189917	19190034	.	+	.	source_transcript=ENST00000419557.1;source_transcript_name=FAM224A-201;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419557.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419557.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000419557.1;transcript_id=HG003_chrY_T0001448;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001448;transcript_name=HG003_chrY_T0001448;gene_name=FAM224A;ID=exon:HG003_chrY_T0001448:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19210729	.	+	.	source_transcript=ENST00000419557.1;source_transcript_name=FAM224A-201;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419557.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419557.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000419557.1;transcript_id=HG003_chrY_T0001448;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001448;transcript_name=HG003_chrY_T0001448;gene_name=FAM224A;ID=intron:HG003_chrY_T0001448:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19210730	19210964	.	+	.	source_transcript=ENST00000419557.1;source_transcript_name=FAM224A-201;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419557.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419557.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000419557.1;transcript_id=HG003_chrY_T0001448;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001448;transcript_name=HG003_chrY_T0001448;gene_name=FAM224A;ID=exon:HG003_chrY_T0001448:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19210965	19212613	.	+	.	source_transcript=ENST00000419557.1;source_transcript_name=FAM224A-201;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419557.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419557.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000419557.1;transcript_id=HG003_chrY_T0001448;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001448;transcript_name=HG003_chrY_T0001448;gene_name=FAM224A;ID=intron:HG003_chrY_T0001448:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212614	19212698	.	+	.	source_transcript=ENST00000419557.1;source_transcript_name=FAM224A-201;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419557.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419557.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000419557.1;transcript_id=HG003_chrY_T0001448;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001448;transcript_name=HG003_chrY_T0001448;gene_name=FAM224A;ID=exon:HG003_chrY_T0001448:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19212699	19212785	.	+	.	source_transcript=ENST00000419557.1;source_transcript_name=FAM224A-201;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419557.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419557.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000419557.1;transcript_id=HG003_chrY_T0001448;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001448;transcript_name=HG003_chrY_T0001448;gene_name=FAM224A;ID=intron:HG003_chrY_T0001448:3;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19212786	19213940	.	+	.	source_transcript=ENST00000419557.1;source_transcript_name=FAM224A-201;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419557.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419557.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000419557.1;transcript_id=HG003_chrY_T0001448;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001448;transcript_name=HG003_chrY_T0001448;gene_name=FAM224A;ID=exon:HG003_chrY_T0001448:4;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19187166	19191572	1000	+	.	source_transcript=ENST00000776215.1;source_transcript_name=FAM224A-221;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776215.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776215.1;transcript_id=HG003_chrY_T0001449;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_G0000491;transcript_name=HG003_chrY_T0001449;gene_name=FAM224A;ID=HG003_chrY_T0001449;Name=FAM224A
HG003_chrY	CAT	exon	19187166	19187421	.	+	.	source_transcript=ENST00000776215.1;source_transcript_name=FAM224A-221;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776215.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776215.1;transcript_id=HG003_chrY_T0001449;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001449;transcript_name=HG003_chrY_T0001449;gene_name=FAM224A;ID=exon:HG003_chrY_T0001449:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19187422	19189944	.	+	.	source_transcript=ENST00000776215.1;source_transcript_name=FAM224A-221;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776215.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776215.1;transcript_id=HG003_chrY_T0001449;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001449;transcript_name=HG003_chrY_T0001449;gene_name=FAM224A;ID=intron:HG003_chrY_T0001449:0;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19189945	19190034	.	+	.	source_transcript=ENST00000776215.1;source_transcript_name=FAM224A-221;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776215.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776215.1;transcript_id=HG003_chrY_T0001449;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001449;transcript_name=HG003_chrY_T0001449;gene_name=FAM224A;ID=exon:HG003_chrY_T0001449:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19190035	19191369	.	+	.	source_transcript=ENST00000776215.1;source_transcript_name=FAM224A-221;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776215.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776215.1;transcript_id=HG003_chrY_T0001449;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001449;transcript_name=HG003_chrY_T0001449;gene_name=FAM224A;ID=intron:HG003_chrY_T0001449:1;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19191370	19191572	.	+	.	source_transcript=ENST00000776215.1;source_transcript_name=FAM224A-221;source_gene=ENSG00000233522.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000233522.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776215.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776215.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM224A;alternative_source_transcripts=ENST00000776215.1;transcript_id=HG003_chrY_T0001449;gene_id=HG003_chrY_G0000491;Parent=HG003_chrY_T0001449;transcript_name=HG003_chrY_T0001449;gene_name=FAM224A;ID=exon:HG003_chrY_T0001449:2;Name=FAM224A;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19197690	19197779	.	+	.	source_gene_common_name=ENSG00000278391;source_gene=ENSG00000278391.1;alternative_source_transcripts=ENST00000614353.1;gene_id=HG003_chrY_G0000492;gene_biotype=misc_RNA;gene_name=ENSG00000278391;gene_sources=liftoff;ID=HG003_chrY_G0000492;Name=ENSG00000278391
HG003_chrY	CAT	transcript	19197690	19197779	1000	+	.	source_transcript=ENST00000614353.1;source_transcript_name=ENST00000614353;source_gene=ENSG00000278391.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000278391.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000614353.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614353.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278391;alternative_source_transcripts=ENST00000614353.1;transcript_id=HG003_chrY_T0001450;gene_id=HG003_chrY_G0000492;Parent=HG003_chrY_G0000492;transcript_name=HG003_chrY_T0001450;gene_name=ENSG00000278391;ID=HG003_chrY_T0001450;Name=ENSG00000278391
HG003_chrY	CAT	exon	19197690	19197779	.	+	.	source_transcript=ENST00000614353.1;source_transcript_name=ENST00000614353;source_gene=ENSG00000278391.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000278391.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000614353.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000614353.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278391;alternative_source_transcripts=ENST00000614353.1;transcript_id=HG003_chrY_T0001450;gene_id=HG003_chrY_G0000492;Parent=HG003_chrY_T0001450;transcript_name=HG003_chrY_T0001450;gene_name=ENSG00000278391;ID=exon:HG003_chrY_T0001450:0;Name=ENSG00000278391;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19206853	19206968	.	-	.	source_gene_common_name=RNA5SP521;source_gene=ENSG00000252012.1;alternative_source_transcripts=ENST00000516144.1;gene_id=HG003_chrY_G0000493;gene_biotype=rRNA_pseudogene;gene_name=RNA5SP521;gene_sources=liftoff;ID=HG003_chrY_G0000493;Name=RNA5SP521
HG003_chrY	CAT	transcript	19206853	19206968	1000	-	.	source_transcript=ENST00000516203.1;source_transcript_name=RNA5SP521-201;source_gene=ENSG00000252012.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000252012.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000516203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516203.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP521;alternative_source_transcripts=ENST00000516144.1;transcript_id=HG003_chrY_T0001451;gene_id=HG003_chrY_G0000493;Parent=HG003_chrY_G0000493;transcript_name=HG003_chrY_T0001451;gene_name=RNA5SP521;ID=HG003_chrY_T0001451;Name=RNA5SP521
HG003_chrY	CAT	exon	19206853	19206968	.	-	.	source_transcript=ENST00000516203.1;source_transcript_name=RNA5SP521-201;source_gene=ENSG00000252012.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000252012.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000516203.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516203.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP521;alternative_source_transcripts=ENST00000516144.1;transcript_id=HG003_chrY_T0001451;gene_id=HG003_chrY_G0000493;Parent=HG003_chrY_T0001451;transcript_name=HG003_chrY_T0001451;gene_name=RNA5SP521;ID=exon:HG003_chrY_T0001451:0;Name=RNA5SP521;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19208766	19208878	.	-	.	source_gene_common_name=RNA5SP520;source_gene=ENSG00000252315.1;alternative_source_transcripts=ENST00000516858.1;gene_id=HG003_chrY_G0000494;gene_biotype=rRNA_pseudogene;gene_name=RNA5SP520;gene_sources=liftoff;ID=HG003_chrY_G0000494;Name=RNA5SP520
HG003_chrY	CAT	transcript	19208766	19208878	1000	-	.	source_transcript=ENST00000516506.1;source_transcript_name=RNA5SP520-201;source_gene=ENSG00000252315.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000252315.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000516506.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516506.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP520;alternative_source_transcripts=ENST00000516858.1;transcript_id=HG003_chrY_T0001452;gene_id=HG003_chrY_G0000494;Parent=HG003_chrY_G0000494;transcript_name=HG003_chrY_T0001452;gene_name=RNA5SP520;ID=HG003_chrY_T0001452;Name=RNA5SP520
HG003_chrY	CAT	exon	19208766	19208878	.	-	.	source_transcript=ENST00000516506.1;source_transcript_name=RNA5SP520-201;source_gene=ENSG00000252315.1;source_gene_biotype=rRNA_pseudogene;original_gene_id=ENSG00000252315.1;gene_biotype=rRNA_pseudogene;transcript_biotype=rRNA_pseudogene;alignment_id=ENST00000516506.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516506.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNA5SP520;alternative_source_transcripts=ENST00000516858.1;transcript_id=HG003_chrY_T0001452;gene_id=HG003_chrY_G0000494;Parent=HG003_chrY_T0001452;transcript_name=HG003_chrY_T0001452;gene_name=RNA5SP520;ID=exon:HG003_chrY_T0001452:0;Name=RNA5SP520;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19247704	19249881	.	+	.	source_gene_common_name=TUBB1P1;source_gene=ENSG00000249726.1;gene_id=HG003_chrY_G0000495;gene_biotype=unprocessed_pseudogene;gene_name=TUBB1P1;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000495;Name=TUBB1P1
HG003_chrY	CAT	transcript	19247704	19249881	1000	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=transMap;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001453;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_G0000495;transcript_name=HG003_chrY_T0001453;gene_name=TUBB1P1;ID=HG003_chrY_T0001453;Name=TUBB1P1
HG003_chrY	CAT	exon	19247704	19247760	.	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=transMap;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001453;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_T0001453;transcript_name=HG003_chrY_T0001453;gene_name=TUBB1P1;ID=exon:HG003_chrY_T0001453:0;Name=TUBB1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19247761	19248065	.	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=transMap;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001453;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_T0001453;transcript_name=HG003_chrY_T0001453;gene_name=TUBB1P1;ID=intron:HG003_chrY_T0001453:0;Name=TUBB1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19248066	19248364	.	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=transMap;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001453;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_T0001453;transcript_name=HG003_chrY_T0001453;gene_name=TUBB1P1;ID=exon:HG003_chrY_T0001453:1;Name=TUBB1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19248365	19248857	.	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=transMap;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001453;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_T0001453;transcript_name=HG003_chrY_T0001453;gene_name=TUBB1P1;ID=intron:HG003_chrY_T0001453:1;Name=TUBB1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19248858	19249881	.	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=transMap;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001453;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_T0001453;transcript_name=HG003_chrY_T0001453;gene_name=TUBB1P1;ID=exon:HG003_chrY_T0001453:2;Name=TUBB1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19247704	19249881	1000	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001454;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_G0000495;transcript_name=HG003_chrY_T0001454;gene_name=TUBB1P1;ID=HG003_chrY_T0001454;Name=TUBB1P1
HG003_chrY	CAT	exon	19247704	19247760	.	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001454;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_T0001454;transcript_name=HG003_chrY_T0001454;gene_name=TUBB1P1;ID=exon:HG003_chrY_T0001454:0;Name=TUBB1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19247761	19248065	.	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001454;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_T0001454;transcript_name=HG003_chrY_T0001454;gene_name=TUBB1P1;ID=intron:HG003_chrY_T0001454:0;Name=TUBB1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19248066	19248174	.	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001454;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_T0001454;transcript_name=HG003_chrY_T0001454;gene_name=TUBB1P1;ID=exon:HG003_chrY_T0001454:1;Name=TUBB1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19248175	19248254	.	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001454;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_T0001454;transcript_name=HG003_chrY_T0001454;gene_name=TUBB1P1;ID=intron:HG003_chrY_T0001454:1;Name=TUBB1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19248255	19248364	.	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001454;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_T0001454;transcript_name=HG003_chrY_T0001454;gene_name=TUBB1P1;ID=exon:HG003_chrY_T0001454:2;Name=TUBB1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19248365	19248857	.	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001454;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_T0001454;transcript_name=HG003_chrY_T0001454;gene_name=TUBB1P1;ID=intron:HG003_chrY_T0001454:2;Name=TUBB1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19248858	19249881	.	+	.	source_transcript=ENST00000503144.1;source_transcript_name=TUBB1P1-201;source_gene=ENSG00000249726.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249726.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000503144.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000503144.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TUBB1P1;transcript_id=HG003_chrY_T0001454;gene_id=HG003_chrY_G0000495;Parent=HG003_chrY_T0001454;transcript_name=HG003_chrY_T0001454;gene_name=TUBB1P1;ID=exon:HG003_chrY_T0001454:3;Name=TUBB1P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19250027	19252240	.	-	.	source_gene_common_name=ENSG00000283076;source_gene=ENSG00000283076.1;gene_id=HG003_chrY_G0000496;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000283076;gene_sources=liftoff;ID=HG003_chrY_G0000496;Name=ENSG00000283076
HG003_chrY	CAT	transcript	19250027	19252240	1000	-	.	source_transcript=ENST00000635343.1;source_transcript_name=ENST00000635343;source_gene=ENSG00000283076.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000283076.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000635343.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000635343.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000283076;transcript_id=HG003_chrY_T0001455;gene_id=HG003_chrY_G0000496;Parent=HG003_chrY_G0000496;transcript_name=HG003_chrY_T0001455;gene_name=ENSG00000283076;ID=HG003_chrY_T0001455;Name=ENSG00000283076
HG003_chrY	CAT	exon	19250027	19250153	.	-	.	source_transcript=ENST00000635343.1;source_transcript_name=ENST00000635343;source_gene=ENSG00000283076.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000283076.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000635343.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000635343.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000283076;transcript_id=HG003_chrY_T0001455;gene_id=HG003_chrY_G0000496;Parent=HG003_chrY_T0001455;transcript_name=HG003_chrY_T0001455;gene_name=ENSG00000283076;ID=exon:HG003_chrY_T0001455:0;Name=ENSG00000283076;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19250154	19250609	.	-	.	source_transcript=ENST00000635343.1;source_transcript_name=ENST00000635343;source_gene=ENSG00000283076.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000283076.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000635343.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000635343.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000283076;transcript_id=HG003_chrY_T0001455;gene_id=HG003_chrY_G0000496;Parent=HG003_chrY_T0001455;transcript_name=HG003_chrY_T0001455;gene_name=ENSG00000283076;ID=intron:HG003_chrY_T0001455:0;Name=ENSG00000283076;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19250610	19250726	.	-	.	source_transcript=ENST00000635343.1;source_transcript_name=ENST00000635343;source_gene=ENSG00000283076.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000283076.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000635343.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000635343.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000283076;transcript_id=HG003_chrY_T0001455;gene_id=HG003_chrY_G0000496;Parent=HG003_chrY_T0001455;transcript_name=HG003_chrY_T0001455;gene_name=ENSG00000283076;ID=exon:HG003_chrY_T0001455:1;Name=ENSG00000283076;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19250727	19251094	.	-	.	source_transcript=ENST00000635343.1;source_transcript_name=ENST00000635343;source_gene=ENSG00000283076.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000283076.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000635343.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000635343.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000283076;transcript_id=HG003_chrY_T0001455;gene_id=HG003_chrY_G0000496;Parent=HG003_chrY_T0001455;transcript_name=HG003_chrY_T0001455;gene_name=ENSG00000283076;ID=intron:HG003_chrY_T0001455:1;Name=ENSG00000283076;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19251095	19251189	.	-	.	source_transcript=ENST00000635343.1;source_transcript_name=ENST00000635343;source_gene=ENSG00000283076.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000283076.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000635343.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000635343.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000283076;transcript_id=HG003_chrY_T0001455;gene_id=HG003_chrY_G0000496;Parent=HG003_chrY_T0001455;transcript_name=HG003_chrY_T0001455;gene_name=ENSG00000283076;ID=exon:HG003_chrY_T0001455:2;Name=ENSG00000283076;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19251190	19251514	.	-	.	source_transcript=ENST00000635343.1;source_transcript_name=ENST00000635343;source_gene=ENSG00000283076.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000283076.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000635343.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000635343.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000283076;transcript_id=HG003_chrY_T0001455;gene_id=HG003_chrY_G0000496;Parent=HG003_chrY_T0001455;transcript_name=HG003_chrY_T0001455;gene_name=ENSG00000283076;ID=intron:HG003_chrY_T0001455:2;Name=ENSG00000283076;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19251515	19251593	.	-	.	source_transcript=ENST00000635343.1;source_transcript_name=ENST00000635343;source_gene=ENSG00000283076.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000283076.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000635343.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000635343.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000283076;transcript_id=HG003_chrY_T0001455;gene_id=HG003_chrY_G0000496;Parent=HG003_chrY_T0001455;transcript_name=HG003_chrY_T0001455;gene_name=ENSG00000283076;ID=exon:HG003_chrY_T0001455:3;Name=ENSG00000283076;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19251594	19251723	.	-	.	source_transcript=ENST00000635343.1;source_transcript_name=ENST00000635343;source_gene=ENSG00000283076.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000283076.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000635343.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000635343.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000283076;transcript_id=HG003_chrY_T0001455;gene_id=HG003_chrY_G0000496;Parent=HG003_chrY_T0001455;transcript_name=HG003_chrY_T0001455;gene_name=ENSG00000283076;ID=intron:HG003_chrY_T0001455:3;Name=ENSG00000283076;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19251724	19251986	.	-	.	source_transcript=ENST00000635343.1;source_transcript_name=ENST00000635343;source_gene=ENSG00000283076.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000283076.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000635343.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000635343.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000283076;transcript_id=HG003_chrY_T0001455;gene_id=HG003_chrY_G0000496;Parent=HG003_chrY_T0001455;transcript_name=HG003_chrY_T0001455;gene_name=ENSG00000283076;ID=exon:HG003_chrY_T0001455:4;Name=ENSG00000283076;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19251987	19252031	.	-	.	source_transcript=ENST00000635343.1;source_transcript_name=ENST00000635343;source_gene=ENSG00000283076.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000283076.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000635343.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000635343.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000283076;transcript_id=HG003_chrY_T0001455;gene_id=HG003_chrY_G0000496;Parent=HG003_chrY_T0001455;transcript_name=HG003_chrY_T0001455;gene_name=ENSG00000283076;ID=intron:HG003_chrY_T0001455:4;Name=ENSG00000283076;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19252032	19252240	.	-	.	source_transcript=ENST00000635343.1;source_transcript_name=ENST00000635343;source_gene=ENSG00000283076.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000283076.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000635343.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000635343.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000283076;transcript_id=HG003_chrY_T0001455;gene_id=HG003_chrY_G0000496;Parent=HG003_chrY_T0001455;transcript_name=HG003_chrY_T0001455;gene_name=ENSG00000283076;ID=exon:HG003_chrY_T0001455:5;Name=ENSG00000283076;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19251724	19265782	.	-	.	source_gene_common_name=FAM41AY1;source_gene=ENSG00000224989.2;gene_id=HG003_chrY_G0000497;gene_biotype=lncRNA;gene_name=FAM41AY1;gene_sources=liftoff;ID=HG003_chrY_G0000497;Name=FAM41AY1
HG003_chrY	CAT	transcript	19251724	19265782	1000	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_G0000497;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=HG003_chrY_T0001456;Name=FAM41AY1
HG003_chrY	CAT	exon	19251724	19251933	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0001456:0;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19251934	19252207	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0001456:0;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19252208	19252301	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0001456:1;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19252302	19252410	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0001456:1;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19252411	19252581	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0001456:2;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19252582	19253174	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0001456:2;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19253175	19253268	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0001456:3;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19253269	19253515	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0001456:3;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19253516	19253644	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0001456:4;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19253645	19264979	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0001456:4;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19264980	19265029	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0001456:5;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19265030	19265624	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=intron:HG003_chrY_T0001456:5;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19265625	19265782	.	-	.	source_transcript=ENST00000421205.2;source_transcript_name=FAM41AY1-201;source_gene=ENSG00000224989.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000224989.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421205.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000421205.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=FAM41AY1;transcript_id=HG003_chrY_T0001456;gene_id=HG003_chrY_G0000497;Parent=HG003_chrY_T0001456;transcript_name=HG003_chrY_T0001456;gene_name=FAM41AY1;ID=exon:HG003_chrY_T0001456:6;Name=FAM41AY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19301525	19301853	.	+	.	source_gene_common_name=ELOCP13;source_gene=ENSG00000225716.1;alternative_source_transcripts=ENST00000443934.1;gene_id=HG003_chrY_G0000498;gene_biotype=processed_pseudogene;gene_name=ELOCP13;gene_sources=liftoff;ID=HG003_chrY_G0000498;Name=ELOCP13
HG003_chrY	CAT	transcript	19301525	19301853	1000	+	.	source_transcript=ENST00000443934.1;source_transcript_name=ELOCP13-201;source_gene=ENSG00000225716.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000225716.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000443934.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443934.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP13;alternative_source_transcripts=ENST00000443934.1;transcript_id=HG003_chrY_T0001457;gene_id=HG003_chrY_G0000498;Parent=HG003_chrY_G0000498;transcript_name=HG003_chrY_T0001457;gene_name=ELOCP13;ID=HG003_chrY_T0001457;Name=ELOCP13
HG003_chrY	CAT	exon	19301525	19301853	.	+	.	source_transcript=ENST00000443934.1;source_transcript_name=ELOCP13-201;source_gene=ENSG00000225716.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000225716.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000443934.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443934.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP13;alternative_source_transcripts=ENST00000443934.1;transcript_id=HG003_chrY_T0001457;gene_id=HG003_chrY_G0000498;Parent=HG003_chrY_T0001457;transcript_name=HG003_chrY_T0001457;gene_name=ELOCP13;ID=exon:HG003_chrY_T0001457:0;Name=ELOCP13;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19313880	19332867	.	-	.	source_gene_common_name=OFD1P4Y;source_gene=ENSG00000229406.1;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;gene_id=HG003_chrY_G0000499;gene_biotype=unprocessed_pseudogene;gene_name=OFD1P4Y;gene_sources=liftoff;ID=HG003_chrY_G0000499;Name=OFD1P4Y
HG003_chrY	CAT	transcript	19313880	19332867	1000	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_G0000499;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=HG003_chrY_T0001458;Name=OFD1P4Y
HG003_chrY	CAT	exon	19313880	19313993	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=exon:HG003_chrY_T0001458:0;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19313994	19315622	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=intron:HG003_chrY_T0001458:0;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19315623	19315713	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=exon:HG003_chrY_T0001458:1;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19315714	19316818	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=intron:HG003_chrY_T0001458:1;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19316819	19316888	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=exon:HG003_chrY_T0001458:2;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19316889	19318674	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=intron:HG003_chrY_T0001458:2;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19318675	19318793	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=exon:HG003_chrY_T0001458:3;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19318794	19320961	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=intron:HG003_chrY_T0001458:3;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19320962	19321067	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=exon:HG003_chrY_T0001458:4;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19321068	19324177	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=intron:HG003_chrY_T0001458:4;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19324178	19324345	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=exon:HG003_chrY_T0001458:5;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19324346	19324641	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=intron:HG003_chrY_T0001458:5;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19324642	19324778	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=exon:HG003_chrY_T0001458:6;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19324779	19328995	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=intron:HG003_chrY_T0001458:6;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19328996	19329026	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=exon:HG003_chrY_T0001458:7;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19329027	19329113	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=intron:HG003_chrY_T0001458:7;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19329114	19329181	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=exon:HG003_chrY_T0001458:8;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19329182	19331399	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=intron:HG003_chrY_T0001458:8;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19331400	19331600	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=exon:HG003_chrY_T0001458:9;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19331601	19332793	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=intron:HG003_chrY_T0001458:9;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19332794	19332867	.	-	.	source_transcript=ENST00000455273.1;source_transcript_name=OFD1P4Y-201;source_gene=ENSG00000229406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000455273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455273.1;transcript_score=299.91499999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P4Y;alternative_source_transcripts=ENST00000455273.1,ENST00000455273.1;transcript_id=HG003_chrY_T0001458;gene_id=HG003_chrY_G0000499;Parent=HG003_chrY_T0001458;transcript_name=HG003_chrY_T0001458;gene_name=OFD1P4Y;ID=exon:HG003_chrY_T0001458:10;Name=OFD1P4Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19340979	19344968	.	+	.	source_gene_common_name=ENSG00000307031;source_gene=ENSG00000307031.1;gene_id=HG003_chrY_G0000500;gene_biotype=lncRNA;gene_name=ENSG00000307031;gene_sources=liftoff;ID=HG003_chrY_G0000500;Name=ENSG00000307031
HG003_chrY	CAT	transcript	19340979	19344968	1000	+	.	source_transcript=ENST00000823008.1;source_transcript_name=ENST00000823008;source_gene=ENSG00000307031.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307031.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000823008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000823008.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307031;transcript_id=HG003_chrY_T0001459;gene_id=HG003_chrY_G0000500;Parent=HG003_chrY_G0000500;transcript_name=HG003_chrY_T0001459;gene_name=ENSG00000307031;ID=HG003_chrY_T0001459;Name=ENSG00000307031
HG003_chrY	CAT	exon	19340979	19341200	.	+	.	source_transcript=ENST00000823008.1;source_transcript_name=ENST00000823008;source_gene=ENSG00000307031.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307031.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000823008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000823008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307031;transcript_id=HG003_chrY_T0001459;gene_id=HG003_chrY_G0000500;Parent=HG003_chrY_T0001459;transcript_name=HG003_chrY_T0001459;gene_name=ENSG00000307031;ID=exon:HG003_chrY_T0001459:0;Name=ENSG00000307031;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19341201	19341818	.	+	.	source_transcript=ENST00000823008.1;source_transcript_name=ENST00000823008;source_gene=ENSG00000307031.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307031.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000823008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000823008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307031;transcript_id=HG003_chrY_T0001459;gene_id=HG003_chrY_G0000500;Parent=HG003_chrY_T0001459;transcript_name=HG003_chrY_T0001459;gene_name=ENSG00000307031;ID=intron:HG003_chrY_T0001459:0;Name=ENSG00000307031;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19341819	19341950	.	+	.	source_transcript=ENST00000823008.1;source_transcript_name=ENST00000823008;source_gene=ENSG00000307031.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307031.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000823008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000823008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307031;transcript_id=HG003_chrY_T0001459;gene_id=HG003_chrY_G0000500;Parent=HG003_chrY_T0001459;transcript_name=HG003_chrY_T0001459;gene_name=ENSG00000307031;ID=exon:HG003_chrY_T0001459:1;Name=ENSG00000307031;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19341951	19344726	.	+	.	source_transcript=ENST00000823008.1;source_transcript_name=ENST00000823008;source_gene=ENSG00000307031.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307031.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000823008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000823008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307031;transcript_id=HG003_chrY_T0001459;gene_id=HG003_chrY_G0000500;Parent=HG003_chrY_T0001459;transcript_name=HG003_chrY_T0001459;gene_name=ENSG00000307031;ID=intron:HG003_chrY_T0001459:1;Name=ENSG00000307031;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19344727	19344968	.	+	.	source_transcript=ENST00000823008.1;source_transcript_name=ENST00000823008;source_gene=ENSG00000307031.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307031.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000823008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000823008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307031;transcript_id=HG003_chrY_T0001459;gene_id=HG003_chrY_G0000500;Parent=HG003_chrY_T0001459;transcript_name=HG003_chrY_T0001459;gene_name=ENSG00000307031;ID=exon:HG003_chrY_T0001459:2;Name=ENSG00000307031;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19341819	19348141	.	+	.	source_gene_common_name=USP9YP14;source_gene=ENSG00000227494.2;gene_id=HG003_chrY_G0000501;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=USP9YP14;gene_sources=liftoff;ID=HG003_chrY_G0000501;Name=USP9YP14
HG003_chrY	CAT	transcript	19341819	19348141	1000	+	.	source_transcript=ENST00000430663.2;source_transcript_name=USP9YP14-201;source_gene=ENSG00000227494.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227494.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000430663.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430663.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP14;transcript_id=HG003_chrY_T0001460;gene_id=HG003_chrY_G0000501;Parent=HG003_chrY_G0000501;transcript_name=HG003_chrY_T0001460;gene_name=USP9YP14;ID=HG003_chrY_T0001460;Name=USP9YP14
HG003_chrY	CAT	exon	19341819	19341952	.	+	.	source_transcript=ENST00000430663.2;source_transcript_name=USP9YP14-201;source_gene=ENSG00000227494.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227494.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000430663.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430663.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP14;transcript_id=HG003_chrY_T0001460;gene_id=HG003_chrY_G0000501;Parent=HG003_chrY_T0001460;transcript_name=HG003_chrY_T0001460;gene_name=USP9YP14;ID=exon:HG003_chrY_T0001460:0;Name=USP9YP14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19341953	19346924	.	+	.	source_transcript=ENST00000430663.2;source_transcript_name=USP9YP14-201;source_gene=ENSG00000227494.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227494.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000430663.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430663.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP14;transcript_id=HG003_chrY_T0001460;gene_id=HG003_chrY_G0000501;Parent=HG003_chrY_T0001460;transcript_name=HG003_chrY_T0001460;gene_name=USP9YP14;ID=intron:HG003_chrY_T0001460:0;Name=USP9YP14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19346925	19347081	.	+	.	source_transcript=ENST00000430663.2;source_transcript_name=USP9YP14-201;source_gene=ENSG00000227494.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227494.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000430663.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430663.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP14;transcript_id=HG003_chrY_T0001460;gene_id=HG003_chrY_G0000501;Parent=HG003_chrY_T0001460;transcript_name=HG003_chrY_T0001460;gene_name=USP9YP14;ID=exon:HG003_chrY_T0001460:1;Name=USP9YP14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19347082	19347493	.	+	.	source_transcript=ENST00000430663.2;source_transcript_name=USP9YP14-201;source_gene=ENSG00000227494.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227494.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000430663.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430663.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP14;transcript_id=HG003_chrY_T0001460;gene_id=HG003_chrY_G0000501;Parent=HG003_chrY_T0001460;transcript_name=HG003_chrY_T0001460;gene_name=USP9YP14;ID=intron:HG003_chrY_T0001460:1;Name=USP9YP14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19347494	19347669	.	+	.	source_transcript=ENST00000430663.2;source_transcript_name=USP9YP14-201;source_gene=ENSG00000227494.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227494.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000430663.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430663.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP14;transcript_id=HG003_chrY_T0001460;gene_id=HG003_chrY_G0000501;Parent=HG003_chrY_T0001460;transcript_name=HG003_chrY_T0001460;gene_name=USP9YP14;ID=exon:HG003_chrY_T0001460:2;Name=USP9YP14;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19347670	19348045	.	+	.	source_transcript=ENST00000430663.2;source_transcript_name=USP9YP14-201;source_gene=ENSG00000227494.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227494.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000430663.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430663.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP14;transcript_id=HG003_chrY_T0001460;gene_id=HG003_chrY_G0000501;Parent=HG003_chrY_T0001460;transcript_name=HG003_chrY_T0001460;gene_name=USP9YP14;ID=intron:HG003_chrY_T0001460:2;Name=USP9YP14;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19348046	19348141	.	+	.	source_transcript=ENST00000430663.2;source_transcript_name=USP9YP14-201;source_gene=ENSG00000227494.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000227494.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000430663.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000430663.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP14;transcript_id=HG003_chrY_T0001460;gene_id=HG003_chrY_G0000501;Parent=HG003_chrY_T0001460;transcript_name=HG003_chrY_T0001460;gene_name=USP9YP14;ID=exon:HG003_chrY_T0001460:3;Name=USP9YP14;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19347242	19347403	.	+	.	source_gene_common_name=RNU1-48P;source_gene=ENSG00000252209.1;alternative_source_transcripts=ENST00000516400.1,ENST00000516400.1;gene_id=HG003_chrY_G0000502;gene_biotype=snRNA;gene_name=RNU1-48P;gene_sources=liftoff;ID=HG003_chrY_G0000502;Name=RNU1-48P
HG003_chrY	CAT	transcript	19347242	19347403	1000	+	.	source_transcript=ENST00000516400.1;source_transcript_name=RNU1-48P-201;source_gene=ENSG00000252209.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252209.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516400.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516400.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-48P;alternative_source_transcripts=ENST00000516400.1,ENST00000516400.1;transcript_id=HG003_chrY_T0001461;gene_id=HG003_chrY_G0000502;Parent=HG003_chrY_G0000502;transcript_name=HG003_chrY_T0001461;gene_name=RNU1-48P;ID=HG003_chrY_T0001461;Name=RNU1-48P
HG003_chrY	CAT	exon	19347242	19347403	.	+	.	source_transcript=ENST00000516400.1;source_transcript_name=RNU1-48P-201;source_gene=ENSG00000252209.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252209.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516400.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516400.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-48P;alternative_source_transcripts=ENST00000516400.1,ENST00000516400.1;transcript_id=HG003_chrY_T0001461;gene_id=HG003_chrY_G0000502;Parent=HG003_chrY_T0001461;transcript_name=HG003_chrY_T0001461;gene_name=RNU1-48P;ID=exon:HG003_chrY_T0001461:0;Name=RNU1-48P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19351656	19355032	.	-	.	source_gene_common_name=USP9YP5;source_gene=ENSG00000249634.1;alternative_source_transcripts=ENST00000511770.1;gene_id=HG003_chrY_G0000503;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP5;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000503;Name=USP9YP5
HG003_chrY	CAT	transcript	19351656	19355032	1000	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=transMap;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;alternative_source_transcripts=ENST00000511770.1;transcript_id=HG003_chrY_T0001462;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_G0000503;transcript_name=HG003_chrY_T0001462;gene_name=USP9YP5;ID=HG003_chrY_T0001462;Name=USP9YP5
HG003_chrY	CAT	exon	19351656	19351846	.	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=transMap;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;alternative_source_transcripts=ENST00000511770.1;transcript_id=HG003_chrY_T0001462;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_T0001462;transcript_name=HG003_chrY_T0001462;gene_name=USP9YP5;ID=exon:HG003_chrY_T0001462:0;Name=USP9YP5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19351847	19353750	.	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=transMap;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;alternative_source_transcripts=ENST00000511770.1;transcript_id=HG003_chrY_T0001462;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_T0001462;transcript_name=HG003_chrY_T0001462;gene_name=USP9YP5;ID=intron:HG003_chrY_T0001462:0;Name=USP9YP5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19353751	19354042	.	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=transMap;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;alternative_source_transcripts=ENST00000511770.1;transcript_id=HG003_chrY_T0001462;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_T0001462;transcript_name=HG003_chrY_T0001462;gene_name=USP9YP5;ID=exon:HG003_chrY_T0001462:1;Name=USP9YP5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19354043	19354811	.	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=transMap;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;alternative_source_transcripts=ENST00000511770.1;transcript_id=HG003_chrY_T0001462;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_T0001462;transcript_name=HG003_chrY_T0001462;gene_name=USP9YP5;ID=intron:HG003_chrY_T0001462:1;Name=USP9YP5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19354812	19355032	.	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=transMap;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;alternative_source_transcripts=ENST00000511770.1;transcript_id=HG003_chrY_T0001462;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_T0001462;transcript_name=HG003_chrY_T0001462;gene_name=USP9YP5;ID=exon:HG003_chrY_T0001462:2;Name=USP9YP5;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19351656	19355032	1000	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;transcript_id=HG003_chrY_T0001463;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_G0000503;transcript_name=HG003_chrY_T0001463;gene_name=USP9YP5;ID=HG003_chrY_T0001463;Name=USP9YP5
HG003_chrY	CAT	exon	19351656	19351846	.	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;transcript_id=HG003_chrY_T0001463;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_T0001463;transcript_name=HG003_chrY_T0001463;gene_name=USP9YP5;ID=exon:HG003_chrY_T0001463:0;Name=USP9YP5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19351847	19353750	.	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;transcript_id=HG003_chrY_T0001463;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_T0001463;transcript_name=HG003_chrY_T0001463;gene_name=USP9YP5;ID=intron:HG003_chrY_T0001463:0;Name=USP9YP5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19353751	19353839	.	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;transcript_id=HG003_chrY_T0001463;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_T0001463;transcript_name=HG003_chrY_T0001463;gene_name=USP9YP5;ID=exon:HG003_chrY_T0001463:1;Name=USP9YP5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19353840	19353917	.	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;transcript_id=HG003_chrY_T0001463;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_T0001463;transcript_name=HG003_chrY_T0001463;gene_name=USP9YP5;ID=intron:HG003_chrY_T0001463:1;Name=USP9YP5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19353918	19354042	.	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;transcript_id=HG003_chrY_T0001463;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_T0001463;transcript_name=HG003_chrY_T0001463;gene_name=USP9YP5;ID=exon:HG003_chrY_T0001463:2;Name=USP9YP5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19354043	19354811	.	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;transcript_id=HG003_chrY_T0001463;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_T0001463;transcript_name=HG003_chrY_T0001463;gene_name=USP9YP5;ID=intron:HG003_chrY_T0001463:2;Name=USP9YP5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19354812	19355032	.	-	.	source_transcript=ENST00000511770.1;source_transcript_name=USP9YP5-201;source_gene=ENSG00000249634.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249634.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000511770.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000511770.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP5;transcript_id=HG003_chrY_T0001463;gene_id=HG003_chrY_G0000503;Parent=HG003_chrY_T0001463;transcript_name=HG003_chrY_T0001463;gene_name=USP9YP5;ID=exon:HG003_chrY_T0001463:3;Name=USP9YP5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19369310	19369801	.	+	.	source_gene_common_name=XKRYP1;source_gene=ENSG00000238067.1;alternative_source_transcripts=ENST00000423438.1,ENST00000423438.1;gene_id=HG003_chrY_G0000504;gene_biotype=unprocessed_pseudogene;gene_name=XKRYP1;gene_sources=liftoff;ID=HG003_chrY_G0000504;Name=XKRYP1
HG003_chrY	CAT	transcript	19369310	19369801	1000	+	.	source_transcript=ENST00000423438.1;source_transcript_name=XKRYP1-201;source_gene=ENSG00000238067.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238067.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423438.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP1;alternative_source_transcripts=ENST00000423438.1,ENST00000423438.1;transcript_id=HG003_chrY_T0001464;gene_id=HG003_chrY_G0000504;Parent=HG003_chrY_G0000504;transcript_name=HG003_chrY_T0001464;gene_name=XKRYP1;ID=HG003_chrY_T0001464;Name=XKRYP1
HG003_chrY	CAT	exon	19369310	19369801	.	+	.	source_transcript=ENST00000423438.1;source_transcript_name=XKRYP1-201;source_gene=ENSG00000238067.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238067.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423438.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP1;alternative_source_transcripts=ENST00000423438.1,ENST00000423438.1;transcript_id=HG003_chrY_T0001464;gene_id=HG003_chrY_G0000504;Parent=HG003_chrY_T0001464;transcript_name=HG003_chrY_T0001464;gene_name=XKRYP1;ID=exon:HG003_chrY_T0001464:0;Name=XKRYP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19393059	19393389	.	-	.	source_gene_common_name=ELOCP7;source_gene=ENSG00000230377.1;alternative_source_transcripts=ENST00000439968.1,ENST00000439968.1;gene_id=HG003_chrY_G0000505;gene_biotype=processed_pseudogene;gene_name=ELOCP7;gene_sources=liftoff;ID=HG003_chrY_G0000505;Name=ELOCP7
HG003_chrY	CAT	transcript	19393059	19393389	1000	-	.	source_transcript=ENST00000439968.1;source_transcript_name=ELOCP7-201;source_gene=ENSG00000230377.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000230377.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000439968.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439968.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP7;alternative_source_transcripts=ENST00000439968.1,ENST00000439968.1;transcript_id=HG003_chrY_T0001465;gene_id=HG003_chrY_G0000505;Parent=HG003_chrY_G0000505;transcript_name=HG003_chrY_T0001465;gene_name=ELOCP7;ID=HG003_chrY_T0001465;Name=ELOCP7
HG003_chrY	CAT	exon	19393059	19393389	.	-	.	source_transcript=ENST00000439968.1;source_transcript_name=ELOCP7-201;source_gene=ENSG00000230377.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000230377.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000439968.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439968.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP7;alternative_source_transcripts=ENST00000439968.1,ENST00000439968.1;transcript_id=HG003_chrY_T0001465;gene_id=HG003_chrY_G0000505;Parent=HG003_chrY_T0001465;transcript_name=HG003_chrY_T0001465;gene_name=ELOCP7;ID=exon:HG003_chrY_T0001465:0;Name=ELOCP7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19401712	19404860	.	+	.	source_gene_common_name=USP9YP2;source_gene=ENSG00000249501.1;gene_id=HG003_chrY_G0000506;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP2;gene_sources=liftoff;ID=HG003_chrY_G0000506;Name=USP9YP2
HG003_chrY	CAT	transcript	19401712	19404860	1000	+	.	source_transcript=ENST00000504503.1;source_transcript_name=USP9YP2-201;source_gene=ENSG00000249501.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249501.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000504503.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000504503.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP2;transcript_id=HG003_chrY_T0001466;gene_id=HG003_chrY_G0000506;Parent=HG003_chrY_G0000506;transcript_name=HG003_chrY_T0001466;gene_name=USP9YP2;ID=HG003_chrY_T0001466;Name=USP9YP2
HG003_chrY	CAT	exon	19401712	19401840	.	+	.	source_transcript=ENST00000504503.1;source_transcript_name=USP9YP2-201;source_gene=ENSG00000249501.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249501.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000504503.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000504503.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP2;transcript_id=HG003_chrY_T0001466;gene_id=HG003_chrY_G0000506;Parent=HG003_chrY_T0001466;transcript_name=HG003_chrY_T0001466;gene_name=USP9YP2;ID=exon:HG003_chrY_T0001466:0;Name=USP9YP2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19401841	19403577	.	+	.	source_transcript=ENST00000504503.1;source_transcript_name=USP9YP2-201;source_gene=ENSG00000249501.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249501.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000504503.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000504503.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP2;transcript_id=HG003_chrY_T0001466;gene_id=HG003_chrY_G0000506;Parent=HG003_chrY_T0001466;transcript_name=HG003_chrY_T0001466;gene_name=USP9YP2;ID=intron:HG003_chrY_T0001466:0;Name=USP9YP2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19403578	19404323	.	+	.	source_transcript=ENST00000504503.1;source_transcript_name=USP9YP2-201;source_gene=ENSG00000249501.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249501.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000504503.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000504503.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP2;transcript_id=HG003_chrY_T0001466;gene_id=HG003_chrY_G0000506;Parent=HG003_chrY_T0001466;transcript_name=HG003_chrY_T0001466;gene_name=USP9YP2;ID=exon:HG003_chrY_T0001466:1;Name=USP9YP2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19404324	19404735	.	+	.	source_transcript=ENST00000504503.1;source_transcript_name=USP9YP2-201;source_gene=ENSG00000249501.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249501.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000504503.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000504503.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP2;transcript_id=HG003_chrY_T0001466;gene_id=HG003_chrY_G0000506;Parent=HG003_chrY_T0001466;transcript_name=HG003_chrY_T0001466;gene_name=USP9YP2;ID=intron:HG003_chrY_T0001466:1;Name=USP9YP2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19404736	19404860	.	+	.	source_transcript=ENST00000504503.1;source_transcript_name=USP9YP2-201;source_gene=ENSG00000249501.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249501.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000504503.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000504503.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP2;transcript_id=HG003_chrY_T0001466;gene_id=HG003_chrY_G0000506;Parent=HG003_chrY_T0001466;transcript_name=HG003_chrY_T0001466;gene_name=USP9YP2;ID=exon:HG003_chrY_T0001466:2;Name=USP9YP2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19407424	19449664	.	+	.	source_gene_common_name=HSFY1;source_gene=ENSG00000172468.14;alternative_source_transcripts=ENST00000309834.8,ENST00000309834.8;gene_id=HG003_chrY_G0000507;gene_biotype=protein_coding;gene_name=HSFY1;gene_sources=liftoff;ID=HG003_chrY_G0000507;Name=HSFY1
HG003_chrY	CAT	transcript	19407424	19449664	100	+	.	source_transcript=ENST00000309834.8;source_transcript_name=HSFY1-202;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000309834.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000309834.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000309834.8,ENST00000309834.8;transcript_id=HG003_chrY_T0001467;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_G0000507;transcript_name=HG003_chrY_T0001467;gene_name=HSFY1;ID=HG003_chrY_T0001467;Name=HSFY1
HG003_chrY	CAT	exon	19407424	19408033	.	+	.	source_transcript=ENST00000309834.8;source_transcript_name=HSFY1-202;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000309834.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000309834.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000309834.8,ENST00000309834.8;transcript_id=HG003_chrY_T0001467;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001467;transcript_name=HG003_chrY_T0001467;gene_name=HSFY1;ID=exon:HG003_chrY_T0001467:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19407521	19408033	.	+	0	source_transcript=ENST00000309834.8;source_transcript_name=HSFY1-202;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000309834.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000309834.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000309834.8,ENST00000309834.8;transcript_id=HG003_chrY_T0001467;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001467;transcript_name=HG003_chrY_T0001467;gene_name=HSFY1;ID=CDS:HG003_chrY_T0001467:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19407521	19407523	.	+	0	source_transcript=ENST00000309834.8;source_transcript_name=HSFY1-202;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000309834.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000309834.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000309834.8,ENST00000309834.8;transcript_id=HG003_chrY_T0001467;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001467;transcript_name=HG003_chrY_T0001467;gene_name=HSFY1;ID=start_codon:HG003_chrY_T0001467;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19408034	19449236	.	+	.	source_transcript=ENST00000309834.8;source_transcript_name=HSFY1-202;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000309834.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000309834.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000309834.8,ENST00000309834.8;transcript_id=HG003_chrY_T0001467;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001467;transcript_name=HG003_chrY_T0001467;gene_name=HSFY1;ID=intron:HG003_chrY_T0001467:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19449237	19449664	.	+	.	source_transcript=ENST00000309834.8;source_transcript_name=HSFY1-202;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000309834.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000309834.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000309834.8,ENST00000309834.8;transcript_id=HG003_chrY_T0001467;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001467;transcript_name=HG003_chrY_T0001467;gene_name=HSFY1;ID=exon:HG003_chrY_T0001467:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19449237	19449335	.	+	0	source_transcript=ENST00000309834.8;source_transcript_name=HSFY1-202;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000309834.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000309834.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000309834.8,ENST00000309834.8;transcript_id=HG003_chrY_T0001467;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001467;transcript_name=HG003_chrY_T0001467;gene_name=HSFY1;ID=CDS:HG003_chrY_T0001467:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19449333	19449335	.	+	0	source_transcript=ENST00000309834.8;source_transcript_name=HSFY1-202;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000309834.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000309834.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000309834.8,ENST00000309834.8;transcript_id=HG003_chrY_T0001467;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001467;transcript_name=HG003_chrY_T0001467;gene_name=HSFY1;ID=stop_codon:HG003_chrY_T0001467;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19407424	19449664	1000	+	.	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_G0000507;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=HG003_chrY_T0001468;Name=HSFY1
HG003_chrY	CAT	exon	19407424	19408033	.	+	.	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=exon:HG003_chrY_T0001468:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19407521	19408033	.	+	0	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=CDS:HG003_chrY_T0001468:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19407521	19407523	.	+	0	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=start_codon:HG003_chrY_T0001468;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19408034	19410846	.	+	.	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=intron:HG003_chrY_T0001468:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19410847	19410956	.	+	.	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=exon:HG003_chrY_T0001468:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19410847	19410956	.	+	0	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=CDS:HG003_chrY_T0001468:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19410957	19411517	.	+	.	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=intron:HG003_chrY_T0001468:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19411518	19411604	.	+	.	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=exon:HG003_chrY_T0001468:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19411518	19411539	.	+	1	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=CDS:HG003_chrY_T0001468:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19411537	19411539	.	+	0	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=stop_codon:HG003_chrY_T0001468;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19411605	19412651	.	+	.	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=intron:HG003_chrY_T0001468:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19412652	19412806	.	+	.	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=exon:HG003_chrY_T0001468:3;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19412807	19443373	.	+	.	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=intron:HG003_chrY_T0001468:3;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19443374	19443459	.	+	.	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=exon:HG003_chrY_T0001468:4;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19443460	19449236	.	+	.	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=intron:HG003_chrY_T0001468:4;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19449237	19449664	.	+	.	source_transcript=ENST00000338876.8;source_transcript_name=HSFY1-203;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000338876.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000338876.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000338876.8,ENST00000338876.8;transcript_id=HG003_chrY_T0001468;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001468;transcript_name=HG003_chrY_T0001468;gene_name=HSFY1;ID=exon:HG003_chrY_T0001468:5;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19407453	19409325	100	+	.	source_transcript=ENST00000307393.3;source_transcript_name=HSFY1-201;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000307393.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000307393.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000307393.3,ENST00000307393.3;transcript_id=HG003_chrY_T0001469;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_G0000507;transcript_name=HG003_chrY_T0001469;gene_name=HSFY1;ID=HG003_chrY_T0001469;Name=HSFY1
HG003_chrY	CAT	exon	19407453	19408033	.	+	.	source_transcript=ENST00000307393.3;source_transcript_name=HSFY1-201;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000307393.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000307393.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000307393.3,ENST00000307393.3;transcript_id=HG003_chrY_T0001469;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001469;transcript_name=HG003_chrY_T0001469;gene_name=HSFY1;ID=exon:HG003_chrY_T0001469:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19407521	19408033	.	+	0	source_transcript=ENST00000307393.3;source_transcript_name=HSFY1-201;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000307393.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000307393.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000307393.3,ENST00000307393.3;transcript_id=HG003_chrY_T0001469;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001469;transcript_name=HG003_chrY_T0001469;gene_name=HSFY1;ID=CDS:HG003_chrY_T0001469:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19407521	19407523	.	+	0	source_transcript=ENST00000307393.3;source_transcript_name=HSFY1-201;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000307393.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000307393.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000307393.3,ENST00000307393.3;transcript_id=HG003_chrY_T0001469;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001469;transcript_name=HG003_chrY_T0001469;gene_name=HSFY1;ID=start_codon:HG003_chrY_T0001469;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19408034	19408511	.	+	.	source_transcript=ENST00000307393.3;source_transcript_name=HSFY1-201;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000307393.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000307393.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000307393.3,ENST00000307393.3;transcript_id=HG003_chrY_T0001469;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001469;transcript_name=HG003_chrY_T0001469;gene_name=HSFY1;ID=intron:HG003_chrY_T0001469:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19408512	19409325	.	+	.	source_transcript=ENST00000307393.3;source_transcript_name=HSFY1-201;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000307393.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000307393.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000307393.3,ENST00000307393.3;transcript_id=HG003_chrY_T0001469;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001469;transcript_name=HG003_chrY_T0001469;gene_name=HSFY1;ID=exon:HG003_chrY_T0001469:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19408512	19409204	.	+	0	source_transcript=ENST00000307393.3;source_transcript_name=HSFY1-201;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000307393.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000307393.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000307393.3,ENST00000307393.3;transcript_id=HG003_chrY_T0001469;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001469;transcript_name=HG003_chrY_T0001469;gene_name=HSFY1;ID=CDS:HG003_chrY_T0001469:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19409202	19409204	.	+	0	source_transcript=ENST00000307393.3;source_transcript_name=HSFY1-201;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000307393.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000307393.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000307393.3,ENST00000307393.3;transcript_id=HG003_chrY_T0001469;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001469;transcript_name=HG003_chrY_T0001469;gene_name=HSFY1;ID=stop_codon:HG003_chrY_T0001469;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19407453	19412200	100	+	.	source_transcript=ENST00000382856.2;source_transcript_name=HSFY1-204;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382856.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382856.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000382856.2,ENST00000382856.2;transcript_id=HG003_chrY_T0001470;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_G0000507;transcript_name=HG003_chrY_T0001470;gene_name=HSFY1;ID=HG003_chrY_T0001470;Name=HSFY1
HG003_chrY	CAT	exon	19407453	19408033	.	+	.	source_transcript=ENST00000382856.2;source_transcript_name=HSFY1-204;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382856.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382856.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000382856.2,ENST00000382856.2;transcript_id=HG003_chrY_T0001470;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001470;transcript_name=HG003_chrY_T0001470;gene_name=HSFY1;ID=exon:HG003_chrY_T0001470:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19407521	19408033	.	+	0	source_transcript=ENST00000382856.2;source_transcript_name=HSFY1-204;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382856.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382856.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000382856.2,ENST00000382856.2;transcript_id=HG003_chrY_T0001470;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001470;transcript_name=HG003_chrY_T0001470;gene_name=HSFY1;ID=CDS:HG003_chrY_T0001470:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19407521	19407523	.	+	0	source_transcript=ENST00000382856.2;source_transcript_name=HSFY1-204;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382856.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382856.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000382856.2,ENST00000382856.2;transcript_id=HG003_chrY_T0001470;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001470;transcript_name=HG003_chrY_T0001470;gene_name=HSFY1;ID=start_codon:HG003_chrY_T0001470;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19408034	19410846	.	+	.	source_transcript=ENST00000382856.2;source_transcript_name=HSFY1-204;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382856.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382856.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000382856.2,ENST00000382856.2;transcript_id=HG003_chrY_T0001470;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001470;transcript_name=HG003_chrY_T0001470;gene_name=HSFY1;ID=intron:HG003_chrY_T0001470:0;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19410847	19410956	.	+	.	source_transcript=ENST00000382856.2;source_transcript_name=HSFY1-204;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382856.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382856.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000382856.2,ENST00000382856.2;transcript_id=HG003_chrY_T0001470;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001470;transcript_name=HG003_chrY_T0001470;gene_name=HSFY1;ID=exon:HG003_chrY_T0001470:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19410847	19410956	.	+	0	source_transcript=ENST00000382856.2;source_transcript_name=HSFY1-204;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382856.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382856.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000382856.2,ENST00000382856.2;transcript_id=HG003_chrY_T0001470;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001470;transcript_name=HG003_chrY_T0001470;gene_name=HSFY1;ID=CDS:HG003_chrY_T0001470:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19410957	19411517	.	+	.	source_transcript=ENST00000382856.2;source_transcript_name=HSFY1-204;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382856.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382856.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000382856.2,ENST00000382856.2;transcript_id=HG003_chrY_T0001470;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001470;transcript_name=HG003_chrY_T0001470;gene_name=HSFY1;ID=intron:HG003_chrY_T0001470:1;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19411518	19412200	.	+	.	source_transcript=ENST00000382856.2;source_transcript_name=HSFY1-204;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382856.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382856.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000382856.2,ENST00000382856.2;transcript_id=HG003_chrY_T0001470;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001470;transcript_name=HG003_chrY_T0001470;gene_name=HSFY1;ID=exon:HG003_chrY_T0001470:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19411518	19411539	.	+	1	source_transcript=ENST00000382856.2;source_transcript_name=HSFY1-204;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382856.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382856.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000382856.2,ENST00000382856.2;transcript_id=HG003_chrY_T0001470;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001470;transcript_name=HG003_chrY_T0001470;gene_name=HSFY1;ID=CDS:HG003_chrY_T0001470:2;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19411537	19411539	.	+	0	source_transcript=ENST00000382856.2;source_transcript_name=HSFY1-204;source_gene=ENSG00000172468.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172468.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382856.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382856.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY1;alternative_source_transcripts=ENST00000382856.2,ENST00000382856.2;transcript_id=HG003_chrY_T0001470;gene_id=HG003_chrY_G0000507;Parent=HG003_chrY_T0001470;transcript_name=HG003_chrY_T0001470;gene_name=HSFY1;ID=stop_codon:HG003_chrY_T0001470;Name=HSFY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19439118	19439261	.	+	.	source_gene_common_name=GPM6BP1;source_gene=ENSG00000230458.1;alternative_source_transcripts=ENST00000446387.1,ENST00000446387.1;gene_id=HG003_chrY_G0000508;gene_biotype=unprocessed_pseudogene;gene_name=GPM6BP1;gene_sources=liftoff;ID=HG003_chrY_G0000508;Name=GPM6BP1
HG003_chrY	CAT	transcript	19439118	19439261	1000	+	.	source_transcript=ENST00000446387.1;source_transcript_name=GPM6BP1-201;source_gene=ENSG00000230458.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230458.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000446387.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000446387.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GPM6BP1;alternative_source_transcripts=ENST00000446387.1,ENST00000446387.1;transcript_id=HG003_chrY_T0001471;gene_id=HG003_chrY_G0000508;Parent=HG003_chrY_G0000508;transcript_name=HG003_chrY_T0001471;gene_name=GPM6BP1;ID=HG003_chrY_T0001471;Name=GPM6BP1
HG003_chrY	CAT	exon	19439118	19439261	.	+	.	source_transcript=ENST00000446387.1;source_transcript_name=GPM6BP1-201;source_gene=ENSG00000230458.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230458.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000446387.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000446387.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GPM6BP1;alternative_source_transcripts=ENST00000446387.1,ENST00000446387.1;transcript_id=HG003_chrY_T0001471;gene_id=HG003_chrY_G0000508;Parent=HG003_chrY_T0001471;transcript_name=HG003_chrY_T0001471;gene_name=GPM6BP1;ID=exon:HG003_chrY_T0001471:0;Name=GPM6BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19441907	19458811	.	-	.	source_gene_common_name=TTTY9B;source_gene=ENSG00000131007.10;gene_id=HG003_chrY_G0000509;gene_biotype=lncRNA;gene_name=TTTY9B;gene_sources=liftoff;ID=HG003_chrY_G0000509;Name=TTTY9B
HG003_chrY	CAT	transcript	19441907	19451222	1000	-	.	source_transcript=ENST00000433794.5;source_transcript_name=TTTY9B-201;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433794.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433794.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001472;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_G0000509;transcript_name=HG003_chrY_T0001472;gene_name=TTTY9B;ID=HG003_chrY_T0001472;Name=TTTY9B
HG003_chrY	CAT	exon	19441907	19443049	.	-	.	source_transcript=ENST00000433794.5;source_transcript_name=TTTY9B-201;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433794.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433794.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001472;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001472;transcript_name=HG003_chrY_T0001472;gene_name=TTTY9B;ID=exon:HG003_chrY_T0001472:0;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19443050	19448112	.	-	.	source_transcript=ENST00000433794.5;source_transcript_name=TTTY9B-201;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433794.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433794.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001472;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001472;transcript_name=HG003_chrY_T0001472;gene_name=TTTY9B;ID=intron:HG003_chrY_T0001472:0;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19448113	19448249	.	-	.	source_transcript=ENST00000433794.5;source_transcript_name=TTTY9B-201;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433794.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433794.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001472;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001472;transcript_name=HG003_chrY_T0001472;gene_name=TTTY9B;ID=exon:HG003_chrY_T0001472:1;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19448250	19448831	.	-	.	source_transcript=ENST00000433794.5;source_transcript_name=TTTY9B-201;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433794.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433794.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001472;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001472;transcript_name=HG003_chrY_T0001472;gene_name=TTTY9B;ID=intron:HG003_chrY_T0001472:1;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19448832	19448945	.	-	.	source_transcript=ENST00000433794.5;source_transcript_name=TTTY9B-201;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433794.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433794.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001472;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001472;transcript_name=HG003_chrY_T0001472;gene_name=TTTY9B;ID=exon:HG003_chrY_T0001472:2;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19448946	19449306	.	-	.	source_transcript=ENST00000433794.5;source_transcript_name=TTTY9B-201;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433794.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433794.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001472;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001472;transcript_name=HG003_chrY_T0001472;gene_name=TTTY9B;ID=intron:HG003_chrY_T0001472:2;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19449307	19449407	.	-	.	source_transcript=ENST00000433794.5;source_transcript_name=TTTY9B-201;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433794.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433794.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001472;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001472;transcript_name=HG003_chrY_T0001472;gene_name=TTTY9B;ID=exon:HG003_chrY_T0001472:3;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19449408	19451080	.	-	.	source_transcript=ENST00000433794.5;source_transcript_name=TTTY9B-201;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433794.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433794.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001472;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001472;transcript_name=HG003_chrY_T0001472;gene_name=TTTY9B;ID=intron:HG003_chrY_T0001472:3;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19451081	19451222	.	-	.	source_transcript=ENST00000433794.5;source_transcript_name=TTTY9B-201;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000433794.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000433794.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001472;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001472;transcript_name=HG003_chrY_T0001472;gene_name=TTTY9B;ID=exon:HG003_chrY_T0001472:4;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19441907	19449413	1000	-	.	source_transcript=ENST00000545582.2;source_transcript_name=TTTY9B-202;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000545582.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000545582.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001473;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_G0000509;transcript_name=HG003_chrY_T0001473;gene_name=TTTY9B;ID=HG003_chrY_T0001473;Name=TTTY9B
HG003_chrY	CAT	exon	19441907	19443049	.	-	.	source_transcript=ENST00000545582.2;source_transcript_name=TTTY9B-202;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000545582.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000545582.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001473;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001473;transcript_name=HG003_chrY_T0001473;gene_name=TTTY9B;ID=exon:HG003_chrY_T0001473:0;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19443050	19448112	.	-	.	source_transcript=ENST00000545582.2;source_transcript_name=TTTY9B-202;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000545582.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000545582.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001473;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001473;transcript_name=HG003_chrY_T0001473;gene_name=TTTY9B;ID=intron:HG003_chrY_T0001473:0;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19448113	19448249	.	-	.	source_transcript=ENST00000545582.2;source_transcript_name=TTTY9B-202;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000545582.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000545582.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001473;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001473;transcript_name=HG003_chrY_T0001473;gene_name=TTTY9B;ID=exon:HG003_chrY_T0001473:1;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19448250	19448831	.	-	.	source_transcript=ENST00000545582.2;source_transcript_name=TTTY9B-202;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000545582.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000545582.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001473;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001473;transcript_name=HG003_chrY_T0001473;gene_name=TTTY9B;ID=intron:HG003_chrY_T0001473:1;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19448832	19448945	.	-	.	source_transcript=ENST00000545582.2;source_transcript_name=TTTY9B-202;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000545582.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000545582.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001473;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001473;transcript_name=HG003_chrY_T0001473;gene_name=TTTY9B;ID=exon:HG003_chrY_T0001473:2;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19448946	19449306	.	-	.	source_transcript=ENST00000545582.2;source_transcript_name=TTTY9B-202;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000545582.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000545582.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001473;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001473;transcript_name=HG003_chrY_T0001473;gene_name=TTTY9B;ID=intron:HG003_chrY_T0001473:2;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19449307	19449413	.	-	.	source_transcript=ENST00000545582.2;source_transcript_name=TTTY9B-202;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000545582.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000545582.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001473;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001473;transcript_name=HG003_chrY_T0001473;gene_name=TTTY9B;ID=exon:HG003_chrY_T0001473:3;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19450655	19458811	1000	-	.	source_transcript=ENST00000776413.1;source_transcript_name=TTTY9B-203;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776413.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776413.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001475;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_G0000509;transcript_name=HG003_chrY_T0001475;gene_name=TTTY9B;ID=HG003_chrY_T0001475;Name=TTTY9B
HG003_chrY	CAT	exon	19450655	19451300	.	-	.	source_transcript=ENST00000776413.1;source_transcript_name=TTTY9B-203;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776413.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776413.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001475;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001475;transcript_name=HG003_chrY_T0001475;gene_name=TTTY9B;ID=exon:HG003_chrY_T0001475:0;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19451301	19458111	.	-	.	source_transcript=ENST00000776413.1;source_transcript_name=TTTY9B-203;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776413.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776413.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001475;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001475;transcript_name=HG003_chrY_T0001475;gene_name=TTTY9B;ID=intron:HG003_chrY_T0001475:0;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19458112	19458373	.	-	.	source_transcript=ENST00000776413.1;source_transcript_name=TTTY9B-203;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776413.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776413.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001475;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001475;transcript_name=HG003_chrY_T0001475;gene_name=TTTY9B;ID=exon:HG003_chrY_T0001475:1;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19458374	19458554	.	-	.	source_transcript=ENST00000776413.1;source_transcript_name=TTTY9B-203;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776413.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776413.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001475;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001475;transcript_name=HG003_chrY_T0001475;gene_name=TTTY9B;ID=intron:HG003_chrY_T0001475:1;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19458555	19458811	.	-	.	source_transcript=ENST00000776413.1;source_transcript_name=TTTY9B-203;source_gene=ENSG00000131007.10;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131007.10;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776413.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776413.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9B;transcript_id=HG003_chrY_T0001475;gene_id=HG003_chrY_G0000509;Parent=HG003_chrY_T0001475;transcript_name=HG003_chrY_T0001475;gene_name=TTTY9B;ID=exon:HG003_chrY_T0001475:2;Name=TTTY9B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19442764	19489778	.	-	.	source_gene_common_name=OFD1P5Y;source_gene=ENSG00000240438.2;gene_id=HG003_chrY_G0000510;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=OFD1P5Y;gene_sources=liftoff;ID=HG003_chrY_G0000510;Name=OFD1P5Y
HG003_chrY	CAT	transcript	19442764	19489778	1000	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_G0000510;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=HG003_chrY_T0001474;Name=OFD1P5Y
HG003_chrY	CAT	exon	19442764	19443057	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:0;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19443058	19443354	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:0;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19443355	19443421	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:1;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19443422	19444610	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:1;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19444611	19444761	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:2;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19444762	19448112	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:2;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19448113	19448249	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:3;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19448250	19449306	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:3;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19449307	19449407	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:4;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19449408	19459919	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:4;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19459920	19460031	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:5;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19460032	19460406	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:5;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19460407	19461033	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:6;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19461034	19463080	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:6;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19463081	19463192	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:7;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19463193	19463726	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:7;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19463727	19463856	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:8;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19463857	19464723	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:8;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19464724	19464859	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:9;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19464860	19466447	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:9;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19466448	19466521	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:10;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19466522	19468157	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:10;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19468158	19468285	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:11;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19468286	19470037	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:11;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19470038	19470144	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:12;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19470145	19472940	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:12;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19472941	19473091	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:13;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19473092	19474896	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:13;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19474897	19474981	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:14;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19474982	19482766	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:14;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19482767	19482938	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:15;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19482939	19487720	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:15;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19487721	19487857	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:16;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19487858	19489673	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=intron:HG003_chrY_T0001474:16;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19489674	19489778	.	-	.	source_transcript=ENST00000447585.2;source_transcript_name=OFD1P5Y-201;source_gene=ENSG00000240438.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000240438.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000447585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000447585.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P5Y;transcript_id=HG003_chrY_T0001474;gene_id=HG003_chrY_G0000510;Parent=HG003_chrY_T0001474;transcript_name=HG003_chrY_T0001474;gene_name=OFD1P5Y;ID=exon:HG003_chrY_T0001474:17;Name=OFD1P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19457006	19489794	.	+	.	source_gene_common_name=ENSG00000301107;source_gene=ENSG00000301107.1;alternative_source_transcripts=ENST00000776238.1,ENST00000776238.1;gene_id=HG003_chrY_G0000511;gene_biotype=lncRNA;gene_name=ENSG00000301107;gene_sources=liftoff;ID=HG003_chrY_G0000511;Name=ENSG00000301107
HG003_chrY	CAT	transcript	19457006	19489794	1000	+	.	source_transcript=ENST00000776238.1;source_transcript_name=ENST00000776238;source_gene=ENSG00000301107.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301107.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776238.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776238.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301107;alternative_source_transcripts=ENST00000776238.1,ENST00000776238.1;transcript_id=HG003_chrY_T0001476;gene_id=HG003_chrY_G0000511;Parent=HG003_chrY_G0000511;transcript_name=HG003_chrY_T0001476;gene_name=ENSG00000301107;ID=HG003_chrY_T0001476;Name=ENSG00000301107
HG003_chrY	CAT	exon	19457006	19457088	.	+	.	source_transcript=ENST00000776238.1;source_transcript_name=ENST00000776238;source_gene=ENSG00000301107.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301107.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776238.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776238.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301107;alternative_source_transcripts=ENST00000776238.1,ENST00000776238.1;transcript_id=HG003_chrY_T0001476;gene_id=HG003_chrY_G0000511;Parent=HG003_chrY_T0001476;transcript_name=HG003_chrY_T0001476;gene_name=ENSG00000301107;ID=exon:HG003_chrY_T0001476:0;Name=ENSG00000301107;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19457089	19480515	.	+	.	source_transcript=ENST00000776238.1;source_transcript_name=ENST00000776238;source_gene=ENSG00000301107.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301107.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776238.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776238.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301107;alternative_source_transcripts=ENST00000776238.1,ENST00000776238.1;transcript_id=HG003_chrY_T0001476;gene_id=HG003_chrY_G0000511;Parent=HG003_chrY_T0001476;transcript_name=HG003_chrY_T0001476;gene_name=ENSG00000301107;ID=intron:HG003_chrY_T0001476:0;Name=ENSG00000301107;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19480516	19480606	.	+	.	source_transcript=ENST00000776238.1;source_transcript_name=ENST00000776238;source_gene=ENSG00000301107.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301107.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776238.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776238.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301107;alternative_source_transcripts=ENST00000776238.1,ENST00000776238.1;transcript_id=HG003_chrY_T0001476;gene_id=HG003_chrY_G0000511;Parent=HG003_chrY_T0001476;transcript_name=HG003_chrY_T0001476;gene_name=ENSG00000301107;ID=exon:HG003_chrY_T0001476:1;Name=ENSG00000301107;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19480607	19489562	.	+	.	source_transcript=ENST00000776238.1;source_transcript_name=ENST00000776238;source_gene=ENSG00000301107.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301107.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776238.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776238.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301107;alternative_source_transcripts=ENST00000776238.1,ENST00000776238.1;transcript_id=HG003_chrY_T0001476;gene_id=HG003_chrY_G0000511;Parent=HG003_chrY_T0001476;transcript_name=HG003_chrY_T0001476;gene_name=ENSG00000301107;ID=intron:HG003_chrY_T0001476:1;Name=ENSG00000301107;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19489563	19489794	.	+	.	source_transcript=ENST00000776238.1;source_transcript_name=ENST00000776238;source_gene=ENSG00000301107.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000301107.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000776238.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000776238.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000301107;alternative_source_transcripts=ENST00000776238.1,ENST00000776238.1;transcript_id=HG003_chrY_T0001476;gene_id=HG003_chrY_G0000511;Parent=HG003_chrY_T0001476;transcript_name=HG003_chrY_T0001476;gene_name=ENSG00000301107;ID=exon:HG003_chrY_T0001476:2;Name=ENSG00000301107;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19510394	19511002	.	+	.	source_gene_common_name=RAB9AP4;source_gene=ENSG00000235479.1;alternative_source_transcripts=ENST00000415230.1,ENST00000415230.1;gene_id=HG003_chrY_G0000512;gene_biotype=unprocessed_pseudogene;gene_name=RAB9AP4;gene_sources=liftoff;ID=HG003_chrY_G0000512;Name=RAB9AP4
HG003_chrY	CAT	transcript	19510394	19511002	1000	+	.	source_transcript=ENST00000415230.1;source_transcript_name=RAB9AP4-201;source_gene=ENSG00000235479.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235479.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000415230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415230.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP4;alternative_source_transcripts=ENST00000415230.1,ENST00000415230.1;transcript_id=HG003_chrY_T0001477;gene_id=HG003_chrY_G0000512;Parent=HG003_chrY_G0000512;transcript_name=HG003_chrY_T0001477;gene_name=RAB9AP4;ID=HG003_chrY_T0001477;Name=RAB9AP4
HG003_chrY	CAT	exon	19510394	19511002	.	+	.	source_transcript=ENST00000415230.1;source_transcript_name=RAB9AP4-201;source_gene=ENSG00000235479.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235479.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000415230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415230.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP4;alternative_source_transcripts=ENST00000415230.1,ENST00000415230.1;transcript_id=HG003_chrY_T0001477;gene_id=HG003_chrY_G0000512;Parent=HG003_chrY_T0001477;transcript_name=HG003_chrY_T0001477;gene_name=RAB9AP4;ID=exon:HG003_chrY_T0001477:0;Name=RAB9AP4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19516238	19516908	.	-	.	source_gene_common_name=TRAPPC2P7;source_gene=ENSG00000249606.1;alternative_source_transcripts=ENST00000509650.1,ENST00000509650.1;gene_id=HG003_chrY_G0000513;gene_biotype=unprocessed_pseudogene;gene_name=TRAPPC2P7;gene_sources=liftoff;ID=HG003_chrY_G0000513;Name=TRAPPC2P7
HG003_chrY	CAT	transcript	19516238	19516908	1000	-	.	source_transcript=ENST00000509650.1;source_transcript_name=TRAPPC2P7-201;source_gene=ENSG00000249606.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249606.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509650.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509650.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P7;alternative_source_transcripts=ENST00000509650.1,ENST00000509650.1;transcript_id=HG003_chrY_T0001478;gene_id=HG003_chrY_G0000513;Parent=HG003_chrY_G0000513;transcript_name=HG003_chrY_T0001478;gene_name=TRAPPC2P7;ID=HG003_chrY_T0001478;Name=TRAPPC2P7
HG003_chrY	CAT	exon	19516238	19516323	.	-	.	source_transcript=ENST00000509650.1;source_transcript_name=TRAPPC2P7-201;source_gene=ENSG00000249606.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249606.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509650.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509650.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P7;alternative_source_transcripts=ENST00000509650.1,ENST00000509650.1;transcript_id=HG003_chrY_T0001478;gene_id=HG003_chrY_G0000513;Parent=HG003_chrY_T0001478;transcript_name=HG003_chrY_T0001478;gene_name=TRAPPC2P7;ID=exon:HG003_chrY_T0001478:0;Name=TRAPPC2P7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19516324	19516763	.	-	.	source_transcript=ENST00000509650.1;source_transcript_name=TRAPPC2P7-201;source_gene=ENSG00000249606.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249606.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509650.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509650.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P7;alternative_source_transcripts=ENST00000509650.1,ENST00000509650.1;transcript_id=HG003_chrY_T0001478;gene_id=HG003_chrY_G0000513;Parent=HG003_chrY_T0001478;transcript_name=HG003_chrY_T0001478;gene_name=TRAPPC2P7;ID=intron:HG003_chrY_T0001478:0;Name=TRAPPC2P7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19516764	19516908	.	-	.	source_transcript=ENST00000509650.1;source_transcript_name=TRAPPC2P7-201;source_gene=ENSG00000249606.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000249606.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509650.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509650.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P7;alternative_source_transcripts=ENST00000509650.1,ENST00000509650.1;transcript_id=HG003_chrY_T0001478;gene_id=HG003_chrY_G0000513;Parent=HG003_chrY_T0001478;transcript_name=HG003_chrY_T0001478;gene_name=TRAPPC2P7;ID=exon:HG003_chrY_T0001478:1;Name=TRAPPC2P7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19534324	19539546	.	+	.	source_gene_common_name=ENSG00000302211;source_gene=ENSG00000302211.1;gene_id=HG003_chrY_G0000514;gene_biotype=lncRNA;gene_name=ENSG00000302211;gene_sources=liftoff;ID=HG003_chrY_G0000514;Name=ENSG00000302211
HG003_chrY	CAT	transcript	19534324	19536658	1000	+	.	source_transcript=ENST00000785016.1;source_transcript_name=ENST00000785016;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785016.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001479;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_G0000514;transcript_name=HG003_chrY_T0001479;gene_name=ENSG00000302211;ID=HG003_chrY_T0001479;Name=ENSG00000302211
HG003_chrY	CAT	exon	19534324	19534455	.	+	.	source_transcript=ENST00000785016.1;source_transcript_name=ENST00000785016;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001479;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_T0001479;transcript_name=HG003_chrY_T0001479;gene_name=ENSG00000302211;ID=exon:HG003_chrY_T0001479:0;Name=ENSG00000302211;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19534456	19534929	.	+	.	source_transcript=ENST00000785016.1;source_transcript_name=ENST00000785016;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001479;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_T0001479;transcript_name=HG003_chrY_T0001479;gene_name=ENSG00000302211;ID=intron:HG003_chrY_T0001479:0;Name=ENSG00000302211;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19534930	19535028	.	+	.	source_transcript=ENST00000785016.1;source_transcript_name=ENST00000785016;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001479;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_T0001479;transcript_name=HG003_chrY_T0001479;gene_name=ENSG00000302211;ID=exon:HG003_chrY_T0001479:1;Name=ENSG00000302211;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19535029	19536082	.	+	.	source_transcript=ENST00000785016.1;source_transcript_name=ENST00000785016;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001479;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_T0001479;transcript_name=HG003_chrY_T0001479;gene_name=ENSG00000302211;ID=intron:HG003_chrY_T0001479:1;Name=ENSG00000302211;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19536083	19536658	.	+	.	source_transcript=ENST00000785016.1;source_transcript_name=ENST00000785016;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001479;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_T0001479;transcript_name=HG003_chrY_T0001479;gene_name=ENSG00000302211;ID=exon:HG003_chrY_T0001479:2;Name=ENSG00000302211;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19534400	19539546	1000	+	.	source_transcript=ENST00000785015.1;source_transcript_name=ENST00000785015;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785015.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001480;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_G0000514;transcript_name=HG003_chrY_T0001480;gene_name=ENSG00000302211;ID=HG003_chrY_T0001480;Name=ENSG00000302211
HG003_chrY	CAT	exon	19534400	19534455	.	+	.	source_transcript=ENST00000785015.1;source_transcript_name=ENST00000785015;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001480;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_T0001480;transcript_name=HG003_chrY_T0001480;gene_name=ENSG00000302211;ID=exon:HG003_chrY_T0001480:0;Name=ENSG00000302211;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19534456	19534929	.	+	.	source_transcript=ENST00000785015.1;source_transcript_name=ENST00000785015;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001480;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_T0001480;transcript_name=HG003_chrY_T0001480;gene_name=ENSG00000302211;ID=intron:HG003_chrY_T0001480:0;Name=ENSG00000302211;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19534930	19535028	.	+	.	source_transcript=ENST00000785015.1;source_transcript_name=ENST00000785015;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001480;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_T0001480;transcript_name=HG003_chrY_T0001480;gene_name=ENSG00000302211;ID=exon:HG003_chrY_T0001480:1;Name=ENSG00000302211;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19535029	19536082	.	+	.	source_transcript=ENST00000785015.1;source_transcript_name=ENST00000785015;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001480;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_T0001480;transcript_name=HG003_chrY_T0001480;gene_name=ENSG00000302211;ID=intron:HG003_chrY_T0001480:1;Name=ENSG00000302211;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19536083	19536285	.	+	.	source_transcript=ENST00000785015.1;source_transcript_name=ENST00000785015;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001480;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_T0001480;transcript_name=HG003_chrY_T0001480;gene_name=ENSG00000302211;ID=exon:HG003_chrY_T0001480:2;Name=ENSG00000302211;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19536286	19539307	.	+	.	source_transcript=ENST00000785015.1;source_transcript_name=ENST00000785015;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001480;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_T0001480;transcript_name=HG003_chrY_T0001480;gene_name=ENSG00000302211;ID=intron:HG003_chrY_T0001480:2;Name=ENSG00000302211;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19539308	19539546	.	+	.	source_transcript=ENST00000785015.1;source_transcript_name=ENST00000785015;source_gene=ENSG00000302211.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000302211.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000785015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000785015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000302211;transcript_id=HG003_chrY_T0001480;gene_id=HG003_chrY_G0000514;Parent=HG003_chrY_T0001480;transcript_name=HG003_chrY_T0001480;gene_name=ENSG00000302211;ID=exon:HG003_chrY_T0001480:3;Name=ENSG00000302211;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19534746	19598808	.	+	.	source_gene_common_name=OFD1P6Y;source_gene=ENSG00000242153.8;gene_id=HG003_chrY_G0000515;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=OFD1P6Y;gene_sources=liftoff;ID=HG003_chrY_G0000515;Name=OFD1P6Y
HG003_chrY	CAT	transcript	19534746	19598808	1000	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_G0000515;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=HG003_chrY_T0001481;Name=OFD1P6Y
HG003_chrY	CAT	exon	19534746	19534757	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:0;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19534758	19534929	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:0;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19534930	19535028	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:1;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19535029	19536082	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:1;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19536083	19536285	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:2;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19536286	19539154	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:2;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19539155	19539222	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:3;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19539223	19539310	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:3;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19539311	19539341	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:4;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19539342	19552041	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:4;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19552042	19552146	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:5;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19552147	19553962	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:5;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19553963	19554099	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:6;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19554100	19558881	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:6;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19558882	19559053	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:7;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19559054	19571677	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:7;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19571678	19571784	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:8;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19571785	19573537	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:8;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19573538	19573636	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:9;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19573637	19575300	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:9;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19575301	19575374	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:10;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19575375	19576962	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:10;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19576963	19577098	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:11;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19577099	19577965	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:11;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19577966	19578095	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:12;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19578096	19578629	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:12;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19578630	19578741	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:13;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19578742	19580788	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:13;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19580789	19581416	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:14;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19581417	19581790	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:14;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19581791	19581902	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:15;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19581903	19592415	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:15;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19592416	19592516	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:16;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19592517	19593573	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:16;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19593574	19593710	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:17;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19593711	19597061	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:17;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19597062	19597212	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:18;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19597213	19598401	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:18;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19598402	19598468	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:19;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19598469	19598765	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=intron:HG003_chrY_T0001481:19;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19598766	19598808	.	+	.	source_transcript=ENST00000451061.5;source_transcript_name=OFD1P6Y-201;source_gene=ENSG00000242153.8;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242153.8;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451061.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451061.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P6Y;transcript_id=HG003_chrY_T0001481;gene_id=HG003_chrY_G0000515;Parent=HG003_chrY_T0001481;transcript_name=HG003_chrY_T0001481;gene_name=OFD1P6Y;ID=exon:HG003_chrY_T0001481:20;Name=OFD1P6Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19552031	19584846	.	-	.	source_gene_common_name=ENSG00000295232;source_gene=ENSG00000295232.1;alternative_source_transcripts=ENST00000728750.1,ENST00000728750.1;gene_id=HG003_chrY_G0000516;gene_biotype=lncRNA;gene_name=ENSG00000295232;gene_sources=liftoff;ID=HG003_chrY_G0000516;Name=ENSG00000295232
HG003_chrY	CAT	transcript	19552031	19584846	1000	-	.	source_transcript=ENST00000728750.1;source_transcript_name=ENST00000728750;source_gene=ENSG00000295232.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295232.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728750.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295232;alternative_source_transcripts=ENST00000728750.1,ENST00000728750.1;transcript_id=HG003_chrY_T0001482;gene_id=HG003_chrY_G0000516;Parent=HG003_chrY_G0000516;transcript_name=HG003_chrY_T0001482;gene_name=ENSG00000295232;ID=HG003_chrY_T0001482;Name=ENSG00000295232
HG003_chrY	CAT	exon	19552031	19552257	.	-	.	source_transcript=ENST00000728750.1;source_transcript_name=ENST00000728750;source_gene=ENSG00000295232.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295232.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728750.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295232;alternative_source_transcripts=ENST00000728750.1,ENST00000728750.1;transcript_id=HG003_chrY_T0001482;gene_id=HG003_chrY_G0000516;Parent=HG003_chrY_T0001482;transcript_name=HG003_chrY_T0001482;gene_name=ENSG00000295232;ID=exon:HG003_chrY_T0001482:0;Name=ENSG00000295232;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19552258	19561213	.	-	.	source_transcript=ENST00000728750.1;source_transcript_name=ENST00000728750;source_gene=ENSG00000295232.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295232.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728750.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295232;alternative_source_transcripts=ENST00000728750.1,ENST00000728750.1;transcript_id=HG003_chrY_T0001482;gene_id=HG003_chrY_G0000516;Parent=HG003_chrY_T0001482;transcript_name=HG003_chrY_T0001482;gene_name=ENSG00000295232;ID=intron:HG003_chrY_T0001482:0;Name=ENSG00000295232;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19561214	19561304	.	-	.	source_transcript=ENST00000728750.1;source_transcript_name=ENST00000728750;source_gene=ENSG00000295232.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295232.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728750.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295232;alternative_source_transcripts=ENST00000728750.1,ENST00000728750.1;transcript_id=HG003_chrY_T0001482;gene_id=HG003_chrY_G0000516;Parent=HG003_chrY_T0001482;transcript_name=HG003_chrY_T0001482;gene_name=ENSG00000295232;ID=exon:HG003_chrY_T0001482:1;Name=ENSG00000295232;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19561305	19584732	.	-	.	source_transcript=ENST00000728750.1;source_transcript_name=ENST00000728750;source_gene=ENSG00000295232.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295232.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728750.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295232;alternative_source_transcripts=ENST00000728750.1,ENST00000728750.1;transcript_id=HG003_chrY_T0001482;gene_id=HG003_chrY_G0000516;Parent=HG003_chrY_T0001482;transcript_name=HG003_chrY_T0001482;gene_name=ENSG00000295232;ID=intron:HG003_chrY_T0001482:1;Name=ENSG00000295232;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19584733	19584846	.	-	.	source_transcript=ENST00000728750.1;source_transcript_name=ENST00000728750;source_gene=ENSG00000295232.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295232.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000728750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000728750.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295232;alternative_source_transcripts=ENST00000728750.1,ENST00000728750.1;transcript_id=HG003_chrY_T0001482;gene_id=HG003_chrY_G0000516;Parent=HG003_chrY_T0001482;transcript_name=HG003_chrY_T0001482;gene_name=ENSG00000295232;ID=exon:HG003_chrY_T0001482:2;Name=ENSG00000295232;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19590601	19599916	.	+	.	source_gene_common_name=TTTY9A;source_gene=ENSG00000290716.1;gene_id=HG003_chrY_G0000517;gene_biotype=lncRNA;gene_name=TTTY9A;gene_sources=liftoff;ID=HG003_chrY_G0000517;Name=TTTY9A
HG003_chrY	CAT	transcript	19590601	19599916	1000	+	.	source_transcript=ENST00000432335.1;source_transcript_name=TTTY9A-201;source_gene=ENSG00000290716.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290716.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432335.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;transcript_id=HG003_chrY_T0001483;gene_id=HG003_chrY_G0000517;Parent=HG003_chrY_G0000517;transcript_name=HG003_chrY_T0001483;gene_name=TTTY9A;ID=HG003_chrY_T0001483;Name=TTTY9A
HG003_chrY	CAT	exon	19590601	19590742	.	+	.	source_transcript=ENST00000432335.1;source_transcript_name=TTTY9A-201;source_gene=ENSG00000290716.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290716.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;transcript_id=HG003_chrY_T0001483;gene_id=HG003_chrY_G0000517;Parent=HG003_chrY_T0001483;transcript_name=HG003_chrY_T0001483;gene_name=TTTY9A;ID=exon:HG003_chrY_T0001483:0;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19590743	19592415	.	+	.	source_transcript=ENST00000432335.1;source_transcript_name=TTTY9A-201;source_gene=ENSG00000290716.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290716.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;transcript_id=HG003_chrY_T0001483;gene_id=HG003_chrY_G0000517;Parent=HG003_chrY_T0001483;transcript_name=HG003_chrY_T0001483;gene_name=TTTY9A;ID=intron:HG003_chrY_T0001483:0;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19592416	19592516	.	+	.	source_transcript=ENST00000432335.1;source_transcript_name=TTTY9A-201;source_gene=ENSG00000290716.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290716.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;transcript_id=HG003_chrY_T0001483;gene_id=HG003_chrY_G0000517;Parent=HG003_chrY_T0001483;transcript_name=HG003_chrY_T0001483;gene_name=TTTY9A;ID=exon:HG003_chrY_T0001483:1;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19592517	19592877	.	+	.	source_transcript=ENST00000432335.1;source_transcript_name=TTTY9A-201;source_gene=ENSG00000290716.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290716.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;transcript_id=HG003_chrY_T0001483;gene_id=HG003_chrY_G0000517;Parent=HG003_chrY_T0001483;transcript_name=HG003_chrY_T0001483;gene_name=TTTY9A;ID=intron:HG003_chrY_T0001483:1;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19592878	19592991	.	+	.	source_transcript=ENST00000432335.1;source_transcript_name=TTTY9A-201;source_gene=ENSG00000290716.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290716.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;transcript_id=HG003_chrY_T0001483;gene_id=HG003_chrY_G0000517;Parent=HG003_chrY_T0001483;transcript_name=HG003_chrY_T0001483;gene_name=TTTY9A;ID=exon:HG003_chrY_T0001483:2;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19592992	19593573	.	+	.	source_transcript=ENST00000432335.1;source_transcript_name=TTTY9A-201;source_gene=ENSG00000290716.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290716.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;transcript_id=HG003_chrY_T0001483;gene_id=HG003_chrY_G0000517;Parent=HG003_chrY_T0001483;transcript_name=HG003_chrY_T0001483;gene_name=TTTY9A;ID=intron:HG003_chrY_T0001483:2;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19593574	19593710	.	+	.	source_transcript=ENST00000432335.1;source_transcript_name=TTTY9A-201;source_gene=ENSG00000290716.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290716.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;transcript_id=HG003_chrY_T0001483;gene_id=HG003_chrY_G0000517;Parent=HG003_chrY_T0001483;transcript_name=HG003_chrY_T0001483;gene_name=TTTY9A;ID=exon:HG003_chrY_T0001483:3;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19593711	19598773	.	+	.	source_transcript=ENST00000432335.1;source_transcript_name=TTTY9A-201;source_gene=ENSG00000290716.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290716.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;transcript_id=HG003_chrY_T0001483;gene_id=HG003_chrY_G0000517;Parent=HG003_chrY_T0001483;transcript_name=HG003_chrY_T0001483;gene_name=TTTY9A;ID=intron:HG003_chrY_T0001483:3;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19598774	19599916	.	+	.	source_transcript=ENST00000432335.1;source_transcript_name=TTTY9A-201;source_gene=ENSG00000290716.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290716.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000432335.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432335.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY9A;transcript_id=HG003_chrY_T0001483;gene_id=HG003_chrY_G0000517;Parent=HG003_chrY_T0001483;transcript_name=HG003_chrY_T0001483;gene_name=TTTY9A;ID=exon:HG003_chrY_T0001483:4;Name=TTTY9A;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19592159	19634443	.	-	.	source_gene_common_name=HSFY2;source_gene=ENSG00000169953.12;alternative_source_transcripts=ENST00000344884.4,ENST00000344884.4;gene_id=HG003_chrY_G0000518;gene_biotype=protein_coding;gene_name=HSFY2;gene_sources=liftoff;ID=HG003_chrY_G0000518;Name=HSFY2
HG003_chrY	CAT	transcript	19592159	19634423	100	-	.	source_transcript=ENST00000344884.4;source_transcript_name=HSFY2-202;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000344884.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344884.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000344884.4,ENST00000344884.4;transcript_id=HG003_chrY_T0001484;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_G0000518;transcript_name=HG003_chrY_T0001484;gene_name=HSFY2;ID=HG003_chrY_T0001484;Name=HSFY2
HG003_chrY	CAT	exon	19592159	19592586	.	-	.	source_transcript=ENST00000344884.4;source_transcript_name=HSFY2-202;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000344884.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344884.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000344884.4,ENST00000344884.4;transcript_id=HG003_chrY_T0001484;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001484;transcript_name=HG003_chrY_T0001484;gene_name=HSFY2;ID=exon:HG003_chrY_T0001484:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19592488	19592586	.	-	0	source_transcript=ENST00000344884.4;source_transcript_name=HSFY2-202;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000344884.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344884.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000344884.4,ENST00000344884.4;transcript_id=HG003_chrY_T0001484;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001484;transcript_name=HG003_chrY_T0001484;gene_name=HSFY2;ID=CDS:HG003_chrY_T0001484:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19592488	19592490	.	-	0	source_transcript=ENST00000344884.4;source_transcript_name=HSFY2-202;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000344884.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344884.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000344884.4,ENST00000344884.4;transcript_id=HG003_chrY_T0001484;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001484;transcript_name=HG003_chrY_T0001484;gene_name=HSFY2;ID=stop_codon:HG003_chrY_T0001484;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19592587	19633813	.	-	.	source_transcript=ENST00000344884.4;source_transcript_name=HSFY2-202;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000344884.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344884.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000344884.4,ENST00000344884.4;transcript_id=HG003_chrY_T0001484;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001484;transcript_name=HG003_chrY_T0001484;gene_name=HSFY2;ID=intron:HG003_chrY_T0001484:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19633814	19634423	.	-	.	source_transcript=ENST00000344884.4;source_transcript_name=HSFY2-202;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000344884.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344884.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000344884.4,ENST00000344884.4;transcript_id=HG003_chrY_T0001484;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001484;transcript_name=HG003_chrY_T0001484;gene_name=HSFY2;ID=exon:HG003_chrY_T0001484:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19633814	19634326	.	-	0	source_transcript=ENST00000344884.4;source_transcript_name=HSFY2-202;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000344884.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344884.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000344884.4,ENST00000344884.4;transcript_id=HG003_chrY_T0001484;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001484;transcript_name=HG003_chrY_T0001484;gene_name=HSFY2;ID=CDS:HG003_chrY_T0001484:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19634324	19634326	.	-	0	source_transcript=ENST00000344884.4;source_transcript_name=HSFY2-202;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000344884.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344884.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000344884.4,ENST00000344884.4;transcript_id=HG003_chrY_T0001484;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001484;transcript_name=HG003_chrY_T0001484;gene_name=HSFY2;ID=start_codon:HG003_chrY_T0001484;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19592159	19634423	1000	-	.	source_transcript=ENST00000491902.1;source_transcript_name=HSFY2-204;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491902.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000491902.1,ENST00000491902.1;transcript_id=HG003_chrY_T0001485;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_G0000518;transcript_name=HG003_chrY_T0001485;gene_name=HSFY2;ID=HG003_chrY_T0001485;Name=HSFY2
HG003_chrY	CAT	exon	19592159	19592586	.	-	.	source_transcript=ENST00000491902.1;source_transcript_name=HSFY2-204;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000491902.1,ENST00000491902.1;transcript_id=HG003_chrY_T0001485;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001485;transcript_name=HG003_chrY_T0001485;gene_name=HSFY2;ID=exon:HG003_chrY_T0001485:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19592587	19598363	.	-	.	source_transcript=ENST00000491902.1;source_transcript_name=HSFY2-204;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000491902.1,ENST00000491902.1;transcript_id=HG003_chrY_T0001485;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001485;transcript_name=HG003_chrY_T0001485;gene_name=HSFY2;ID=intron:HG003_chrY_T0001485:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19598364	19598449	.	-	.	source_transcript=ENST00000491902.1;source_transcript_name=HSFY2-204;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000491902.1,ENST00000491902.1;transcript_id=HG003_chrY_T0001485;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001485;transcript_name=HG003_chrY_T0001485;gene_name=HSFY2;ID=exon:HG003_chrY_T0001485:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19598450	19629040	.	-	.	source_transcript=ENST00000491902.1;source_transcript_name=HSFY2-204;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000491902.1,ENST00000491902.1;transcript_id=HG003_chrY_T0001485;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001485;transcript_name=HG003_chrY_T0001485;gene_name=HSFY2;ID=intron:HG003_chrY_T0001485:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19629041	19629195	.	-	.	source_transcript=ENST00000491902.1;source_transcript_name=HSFY2-204;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000491902.1,ENST00000491902.1;transcript_id=HG003_chrY_T0001485;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001485;transcript_name=HG003_chrY_T0001485;gene_name=HSFY2;ID=exon:HG003_chrY_T0001485:2;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19629196	19630242	.	-	.	source_transcript=ENST00000491902.1;source_transcript_name=HSFY2-204;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000491902.1,ENST00000491902.1;transcript_id=HG003_chrY_T0001485;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001485;transcript_name=HG003_chrY_T0001485;gene_name=HSFY2;ID=intron:HG003_chrY_T0001485:2;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19630243	19630329	.	-	.	source_transcript=ENST00000491902.1;source_transcript_name=HSFY2-204;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000491902.1,ENST00000491902.1;transcript_id=HG003_chrY_T0001485;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001485;transcript_name=HG003_chrY_T0001485;gene_name=HSFY2;ID=exon:HG003_chrY_T0001485:3;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19630330	19630890	.	-	.	source_transcript=ENST00000491902.1;source_transcript_name=HSFY2-204;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000491902.1,ENST00000491902.1;transcript_id=HG003_chrY_T0001485;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001485;transcript_name=HG003_chrY_T0001485;gene_name=HSFY2;ID=intron:HG003_chrY_T0001485:3;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19630891	19631000	.	-	.	source_transcript=ENST00000491902.1;source_transcript_name=HSFY2-204;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000491902.1,ENST00000491902.1;transcript_id=HG003_chrY_T0001485;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001485;transcript_name=HG003_chrY_T0001485;gene_name=HSFY2;ID=exon:HG003_chrY_T0001485:4;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19631001	19633813	.	-	.	source_transcript=ENST00000491902.1;source_transcript_name=HSFY2-204;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000491902.1,ENST00000491902.1;transcript_id=HG003_chrY_T0001485;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001485;transcript_name=HG003_chrY_T0001485;gene_name=HSFY2;ID=intron:HG003_chrY_T0001485:4;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19633814	19634423	.	-	.	source_transcript=ENST00000491902.1;source_transcript_name=HSFY2-204;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000491902.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000491902.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000491902.1,ENST00000491902.1;transcript_id=HG003_chrY_T0001485;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001485;transcript_name=HG003_chrY_T0001485;gene_name=HSFY2;ID=exon:HG003_chrY_T0001485:5;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19629631	19634394	100	-	.	source_transcript=ENST00000382852.1;source_transcript_name=HSFY2-203;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382852.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382852.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000382852.1,ENST00000382852.1;transcript_id=HG003_chrY_T0001487;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_G0000518;transcript_name=HG003_chrY_T0001487;gene_name=HSFY2;ID=HG003_chrY_T0001487;Name=HSFY2
HG003_chrY	CAT	exon	19629631	19630329	.	-	.	source_transcript=ENST00000382852.1;source_transcript_name=HSFY2-203;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382852.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382852.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000382852.1,ENST00000382852.1;transcript_id=HG003_chrY_T0001487;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001487;transcript_name=HG003_chrY_T0001487;gene_name=HSFY2;ID=exon:HG003_chrY_T0001487:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19630308	19630329	.	-	1	source_transcript=ENST00000382852.1;source_transcript_name=HSFY2-203;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382852.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382852.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000382852.1,ENST00000382852.1;transcript_id=HG003_chrY_T0001487;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001487;transcript_name=HG003_chrY_T0001487;gene_name=HSFY2;ID=CDS:HG003_chrY_T0001487:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19630308	19630310	.	-	0	source_transcript=ENST00000382852.1;source_transcript_name=HSFY2-203;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382852.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382852.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000382852.1,ENST00000382852.1;transcript_id=HG003_chrY_T0001487;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001487;transcript_name=HG003_chrY_T0001487;gene_name=HSFY2;ID=stop_codon:HG003_chrY_T0001487;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19630330	19630890	.	-	.	source_transcript=ENST00000382852.1;source_transcript_name=HSFY2-203;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382852.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382852.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000382852.1,ENST00000382852.1;transcript_id=HG003_chrY_T0001487;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001487;transcript_name=HG003_chrY_T0001487;gene_name=HSFY2;ID=intron:HG003_chrY_T0001487:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19630891	19631000	.	-	.	source_transcript=ENST00000382852.1;source_transcript_name=HSFY2-203;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382852.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382852.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000382852.1,ENST00000382852.1;transcript_id=HG003_chrY_T0001487;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001487;transcript_name=HG003_chrY_T0001487;gene_name=HSFY2;ID=exon:HG003_chrY_T0001487:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19630891	19631000	.	-	0	source_transcript=ENST00000382852.1;source_transcript_name=HSFY2-203;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382852.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382852.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000382852.1,ENST00000382852.1;transcript_id=HG003_chrY_T0001487;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001487;transcript_name=HG003_chrY_T0001487;gene_name=HSFY2;ID=CDS:HG003_chrY_T0001487:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19631001	19633813	.	-	.	source_transcript=ENST00000382852.1;source_transcript_name=HSFY2-203;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382852.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382852.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000382852.1,ENST00000382852.1;transcript_id=HG003_chrY_T0001487;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001487;transcript_name=HG003_chrY_T0001487;gene_name=HSFY2;ID=intron:HG003_chrY_T0001487:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19633814	19634394	.	-	.	source_transcript=ENST00000382852.1;source_transcript_name=HSFY2-203;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382852.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382852.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000382852.1,ENST00000382852.1;transcript_id=HG003_chrY_T0001487;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001487;transcript_name=HG003_chrY_T0001487;gene_name=HSFY2;ID=exon:HG003_chrY_T0001487:2;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19633814	19634326	.	-	0	source_transcript=ENST00000382852.1;source_transcript_name=HSFY2-203;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382852.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382852.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000382852.1,ENST00000382852.1;transcript_id=HG003_chrY_T0001487;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001487;transcript_name=HG003_chrY_T0001487;gene_name=HSFY2;ID=CDS:HG003_chrY_T0001487:2;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19634324	19634326	.	-	0	source_transcript=ENST00000382852.1;source_transcript_name=HSFY2-203;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382852.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382852.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000382852.1,ENST00000382852.1;transcript_id=HG003_chrY_T0001487;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001487;transcript_name=HG003_chrY_T0001487;gene_name=HSFY2;ID=start_codon:HG003_chrY_T0001487;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19632522	19634443	100	-	.	source_transcript=ENST00000304790.3;source_transcript_name=HSFY2-201;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000304790.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000304790.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000304790.3,ENST00000304790.3;transcript_id=HG003_chrY_T0001488;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_G0000518;transcript_name=HG003_chrY_T0001488;gene_name=HSFY2;ID=HG003_chrY_T0001488;Name=HSFY2
HG003_chrY	CAT	exon	19632522	19633335	.	-	.	source_transcript=ENST00000304790.3;source_transcript_name=HSFY2-201;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000304790.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000304790.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000304790.3,ENST00000304790.3;transcript_id=HG003_chrY_T0001488;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001488;transcript_name=HG003_chrY_T0001488;gene_name=HSFY2;ID=exon:HG003_chrY_T0001488:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19632643	19633335	.	-	0	source_transcript=ENST00000304790.3;source_transcript_name=HSFY2-201;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000304790.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000304790.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000304790.3,ENST00000304790.3;transcript_id=HG003_chrY_T0001488;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001488;transcript_name=HG003_chrY_T0001488;gene_name=HSFY2;ID=CDS:HG003_chrY_T0001488:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	19632643	19632645	.	-	0	source_transcript=ENST00000304790.3;source_transcript_name=HSFY2-201;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000304790.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000304790.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000304790.3,ENST00000304790.3;transcript_id=HG003_chrY_T0001488;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001488;transcript_name=HG003_chrY_T0001488;gene_name=HSFY2;ID=stop_codon:HG003_chrY_T0001488;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19633336	19633813	.	-	.	source_transcript=ENST00000304790.3;source_transcript_name=HSFY2-201;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000304790.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000304790.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000304790.3,ENST00000304790.3;transcript_id=HG003_chrY_T0001488;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001488;transcript_name=HG003_chrY_T0001488;gene_name=HSFY2;ID=intron:HG003_chrY_T0001488:0;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19633814	19634443	.	-	.	source_transcript=ENST00000304790.3;source_transcript_name=HSFY2-201;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000304790.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000304790.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000304790.3,ENST00000304790.3;transcript_id=HG003_chrY_T0001488;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001488;transcript_name=HG003_chrY_T0001488;gene_name=HSFY2;ID=exon:HG003_chrY_T0001488:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	19633814	19634326	.	-	0	source_transcript=ENST00000304790.3;source_transcript_name=HSFY2-201;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000304790.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000304790.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000304790.3,ENST00000304790.3;transcript_id=HG003_chrY_T0001488;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001488;transcript_name=HG003_chrY_T0001488;gene_name=HSFY2;ID=CDS:HG003_chrY_T0001488:1;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	19634324	19634326	.	-	0	source_transcript=ENST00000304790.3;source_transcript_name=HSFY2-201;source_gene=ENSG00000169953.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169953.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000304790.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000304790.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY2;alternative_source_transcripts=ENST00000304790.3,ENST00000304790.3;transcript_id=HG003_chrY_T0001488;gene_id=HG003_chrY_G0000518;Parent=HG003_chrY_T0001488;transcript_name=HG003_chrY_T0001488;gene_name=HSFY2;ID=start_codon:HG003_chrY_T0001488;Name=HSFY2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19602562	19602705	.	-	.	source_gene_common_name=GPM6BP2;source_gene=ENSG00000236429.1;alternative_source_transcripts=ENST00000432046.1,ENST00000432046.1;gene_id=HG003_chrY_G0000519;gene_biotype=unprocessed_pseudogene;gene_name=GPM6BP2;gene_sources=liftoff;ID=HG003_chrY_G0000519;Name=GPM6BP2
HG003_chrY	CAT	transcript	19602562	19602705	1000	-	.	source_transcript=ENST00000432046.1;source_transcript_name=GPM6BP2-201;source_gene=ENSG00000236429.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236429.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000432046.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432046.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GPM6BP2;alternative_source_transcripts=ENST00000432046.1,ENST00000432046.1;transcript_id=HG003_chrY_T0001486;gene_id=HG003_chrY_G0000519;Parent=HG003_chrY_G0000519;transcript_name=HG003_chrY_T0001486;gene_name=GPM6BP2;ID=HG003_chrY_T0001486;Name=GPM6BP2
HG003_chrY	CAT	exon	19602562	19602705	.	-	.	source_transcript=ENST00000432046.1;source_transcript_name=GPM6BP2-201;source_gene=ENSG00000236429.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236429.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000432046.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432046.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GPM6BP2;alternative_source_transcripts=ENST00000432046.1,ENST00000432046.1;transcript_id=HG003_chrY_T0001486;gene_id=HG003_chrY_G0000519;Parent=HG003_chrY_T0001486;transcript_name=HG003_chrY_T0001486;gene_name=GPM6BP2;ID=exon:HG003_chrY_T0001486:0;Name=GPM6BP2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19636987	19640135	.	-	.	source_gene_common_name=USP9YP1;source_gene=ENSG00000250951.1;gene_id=HG003_chrY_G0000520;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP1;gene_sources=liftoff;ID=HG003_chrY_G0000520;Name=USP9YP1
HG003_chrY	CAT	transcript	19636987	19640135	1000	-	.	source_transcript=ENST00000513521.1;source_transcript_name=USP9YP1-201;source_gene=ENSG00000250951.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000250951.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000513521.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000513521.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP1;transcript_id=HG003_chrY_T0001489;gene_id=HG003_chrY_G0000520;Parent=HG003_chrY_G0000520;transcript_name=HG003_chrY_T0001489;gene_name=USP9YP1;ID=HG003_chrY_T0001489;Name=USP9YP1
HG003_chrY	CAT	exon	19636987	19637111	.	-	.	source_transcript=ENST00000513521.1;source_transcript_name=USP9YP1-201;source_gene=ENSG00000250951.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000250951.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000513521.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000513521.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP1;transcript_id=HG003_chrY_T0001489;gene_id=HG003_chrY_G0000520;Parent=HG003_chrY_T0001489;transcript_name=HG003_chrY_T0001489;gene_name=USP9YP1;ID=exon:HG003_chrY_T0001489:0;Name=USP9YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19637112	19637522	.	-	.	source_transcript=ENST00000513521.1;source_transcript_name=USP9YP1-201;source_gene=ENSG00000250951.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000250951.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000513521.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000513521.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP1;transcript_id=HG003_chrY_T0001489;gene_id=HG003_chrY_G0000520;Parent=HG003_chrY_T0001489;transcript_name=HG003_chrY_T0001489;gene_name=USP9YP1;ID=intron:HG003_chrY_T0001489:0;Name=USP9YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19637523	19638269	.	-	.	source_transcript=ENST00000513521.1;source_transcript_name=USP9YP1-201;source_gene=ENSG00000250951.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000250951.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000513521.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000513521.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP1;transcript_id=HG003_chrY_T0001489;gene_id=HG003_chrY_G0000520;Parent=HG003_chrY_T0001489;transcript_name=HG003_chrY_T0001489;gene_name=USP9YP1;ID=exon:HG003_chrY_T0001489:1;Name=USP9YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19638270	19640005	.	-	.	source_transcript=ENST00000513521.1;source_transcript_name=USP9YP1-201;source_gene=ENSG00000250951.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000250951.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000513521.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000513521.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP1;transcript_id=HG003_chrY_T0001489;gene_id=HG003_chrY_G0000520;Parent=HG003_chrY_T0001489;transcript_name=HG003_chrY_T0001489;gene_name=USP9YP1;ID=intron:HG003_chrY_T0001489:1;Name=USP9YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19640006	19640135	.	-	.	source_transcript=ENST00000513521.1;source_transcript_name=USP9YP1-201;source_gene=ENSG00000250951.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000250951.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000513521.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000513521.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP1;transcript_id=HG003_chrY_T0001489;gene_id=HG003_chrY_G0000520;Parent=HG003_chrY_T0001489;transcript_name=HG003_chrY_T0001489;gene_name=USP9YP1;ID=exon:HG003_chrY_T0001489:2;Name=USP9YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19648459	19648789	.	+	.	source_gene_common_name=ELOCP14;source_gene=ENSG00000228193.1;alternative_source_transcripts=ENST00000428070.1,ENST00000428070.1;gene_id=HG003_chrY_G0000521;gene_biotype=processed_pseudogene;gene_name=ELOCP14;gene_sources=liftoff;ID=HG003_chrY_G0000521;Name=ELOCP14
HG003_chrY	CAT	transcript	19648459	19648789	1000	+	.	source_transcript=ENST00000428070.1;source_transcript_name=ELOCP14-201;source_gene=ENSG00000228193.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228193.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000428070.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428070.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP14;alternative_source_transcripts=ENST00000428070.1,ENST00000428070.1;transcript_id=HG003_chrY_T0001490;gene_id=HG003_chrY_G0000521;Parent=HG003_chrY_G0000521;transcript_name=HG003_chrY_T0001490;gene_name=ELOCP14;ID=HG003_chrY_T0001490;Name=ELOCP14
HG003_chrY	CAT	exon	19648459	19648789	.	+	.	source_transcript=ENST00000428070.1;source_transcript_name=ELOCP14-201;source_gene=ENSG00000228193.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228193.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000428070.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428070.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP14;alternative_source_transcripts=ENST00000428070.1,ENST00000428070.1;transcript_id=HG003_chrY_T0001490;gene_id=HG003_chrY_G0000521;Parent=HG003_chrY_T0001490;transcript_name=HG003_chrY_T0001490;gene_name=ELOCP14;ID=exon:HG003_chrY_T0001490:0;Name=ELOCP14;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19672048	19672539	.	-	.	source_gene_common_name=XKRYP2;source_gene=ENSG00000230904.1;alternative_source_transcripts=ENST00000432915.1,ENST00000432915.1;gene_id=HG003_chrY_G0000522;gene_biotype=unprocessed_pseudogene;gene_name=XKRYP2;gene_sources=liftoff;ID=HG003_chrY_G0000522;Name=XKRYP2
HG003_chrY	CAT	transcript	19672048	19672539	1000	-	.	source_transcript=ENST00000432915.1;source_transcript_name=XKRYP2-201;source_gene=ENSG00000230904.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230904.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000432915.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432915.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP2;alternative_source_transcripts=ENST00000432915.1,ENST00000432915.1;transcript_id=HG003_chrY_T0001491;gene_id=HG003_chrY_G0000522;Parent=HG003_chrY_G0000522;transcript_name=HG003_chrY_T0001491;gene_name=XKRYP2;ID=HG003_chrY_T0001491;Name=XKRYP2
HG003_chrY	CAT	exon	19672048	19672539	.	-	.	source_transcript=ENST00000432915.1;source_transcript_name=XKRYP2-201;source_gene=ENSG00000230904.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230904.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000432915.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432915.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP2;alternative_source_transcripts=ENST00000432915.1,ENST00000432915.1;transcript_id=HG003_chrY_T0001491;gene_id=HG003_chrY_G0000522;Parent=HG003_chrY_T0001491;transcript_name=HG003_chrY_T0001491;gene_name=XKRYP2;ID=exon:HG003_chrY_T0001491:0;Name=XKRYP2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19686818	19690201	.	+	.	source_gene_common_name=USP9YP10;source_gene=ENSG00000238135.1;gene_id=HG003_chrY_G0000523;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP10;gene_sources=liftoff,transMap,transMap_pairwise;ID=HG003_chrY_G0000523;Name=USP9YP10
HG003_chrY	CAT	transcript	19686818	19690201	1000	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001492;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_G0000523;transcript_name=HG003_chrY_T0001492;gene_name=USP9YP10;ID=HG003_chrY_T0001492;Name=USP9YP10
HG003_chrY	CAT	exon	19686818	19687038	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001492;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001492;transcript_name=HG003_chrY_T0001492;gene_name=USP9YP10;ID=exon:HG003_chrY_T0001492:0;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19687039	19687807	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001492;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001492;transcript_name=HG003_chrY_T0001492;gene_name=USP9YP10;ID=intron:HG003_chrY_T0001492:0;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19687808	19688107	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001492;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001492;transcript_name=HG003_chrY_T0001492;gene_name=USP9YP10;ID=exon:HG003_chrY_T0001492:1;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19688108	19690012	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001492;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001492;transcript_name=HG003_chrY_T0001492;gene_name=USP9YP10;ID=intron:HG003_chrY_T0001492:1;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19690013	19690201	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001492;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001492;transcript_name=HG003_chrY_T0001492;gene_name=USP9YP10;ID=exon:HG003_chrY_T0001492:2;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19686818	19690201	1000	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001493;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_G0000523;transcript_name=HG003_chrY_T0001493;gene_name=USP9YP10;ID=HG003_chrY_T0001493;Name=USP9YP10
HG003_chrY	CAT	exon	19686818	19687038	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001493;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001493;transcript_name=HG003_chrY_T0001493;gene_name=USP9YP10;ID=exon:HG003_chrY_T0001493:0;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19687039	19687807	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001493;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001493;transcript_name=HG003_chrY_T0001493;gene_name=USP9YP10;ID=intron:HG003_chrY_T0001493:0;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19687808	19687929	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001493;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001493;transcript_name=HG003_chrY_T0001493;gene_name=USP9YP10;ID=exon:HG003_chrY_T0001493:1;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19687930	19688013	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001493;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001493;transcript_name=HG003_chrY_T0001493;gene_name=USP9YP10;ID=intron:HG003_chrY_T0001493:1;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19688014	19688107	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001493;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001493;transcript_name=HG003_chrY_T0001493;gene_name=USP9YP10;ID=exon:HG003_chrY_T0001493:2;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19688108	19690012	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001493;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001493;transcript_name=HG003_chrY_T0001493;gene_name=USP9YP10;ID=intron:HG003_chrY_T0001493:2;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19690013	19690201	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=transMap_pairwise;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001493;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001493;transcript_name=HG003_chrY_T0001493;gene_name=USP9YP10;ID=exon:HG003_chrY_T0001493:3;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19686818	19690201	1000	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001494;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_G0000523;transcript_name=HG003_chrY_T0001494;gene_name=USP9YP10;ID=HG003_chrY_T0001494;Name=USP9YP10
HG003_chrY	CAT	exon	19686818	19687038	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001494;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001494;transcript_name=HG003_chrY_T0001494;gene_name=USP9YP10;ID=exon:HG003_chrY_T0001494:0;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19687039	19687807	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001494;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001494;transcript_name=HG003_chrY_T0001494;gene_name=USP9YP10;ID=intron:HG003_chrY_T0001494:0;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19687808	19687931	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001494;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001494;transcript_name=HG003_chrY_T0001494;gene_name=USP9YP10;ID=exon:HG003_chrY_T0001494:1;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19687932	19688013	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001494;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001494;transcript_name=HG003_chrY_T0001494;gene_name=USP9YP10;ID=intron:HG003_chrY_T0001494:1;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19688014	19688107	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001494;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001494;transcript_name=HG003_chrY_T0001494;gene_name=USP9YP10;ID=exon:HG003_chrY_T0001494:2;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19688108	19690012	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001494;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001494;transcript_name=HG003_chrY_T0001494;gene_name=USP9YP10;ID=intron:HG003_chrY_T0001494:2;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19690013	19690201	.	+	.	source_transcript=ENST00000454868.1;source_transcript_name=USP9YP10-201;source_gene=ENSG00000238135.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238135.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454868.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454868.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP10;transcript_id=HG003_chrY_T0001494;gene_id=HG003_chrY_G0000523;Parent=HG003_chrY_T0001494;transcript_name=HG003_chrY_T0001494;gene_name=USP9YP10;ID=exon:HG003_chrY_T0001494:3;Name=USP9YP10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19693716	19700026	.	-	.	source_gene_common_name=USP9YP28;source_gene=ENSG00000224151.1;gene_id=HG003_chrY_G0000524;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=USP9YP28;gene_sources=liftoff;ID=HG003_chrY_G0000524;Name=USP9YP28
HG003_chrY	CAT	transcript	19693716	19700026	1000	-	.	source_transcript=ENST00000435142.1;source_transcript_name=USP9YP28-201;source_gene=ENSG00000224151.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224151.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000435142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435142.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP28;transcript_id=HG003_chrY_T0001495;gene_id=HG003_chrY_G0000524;Parent=HG003_chrY_G0000524;transcript_name=HG003_chrY_T0001495;gene_name=USP9YP28;ID=HG003_chrY_T0001495;Name=USP9YP28
HG003_chrY	CAT	exon	19693716	19693811	.	-	.	source_transcript=ENST00000435142.1;source_transcript_name=USP9YP28-201;source_gene=ENSG00000224151.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224151.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000435142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435142.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP28;transcript_id=HG003_chrY_T0001495;gene_id=HG003_chrY_G0000524;Parent=HG003_chrY_T0001495;transcript_name=HG003_chrY_T0001495;gene_name=USP9YP28;ID=exon:HG003_chrY_T0001495:0;Name=USP9YP28;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19693812	19694188	.	-	.	source_transcript=ENST00000435142.1;source_transcript_name=USP9YP28-201;source_gene=ENSG00000224151.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224151.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000435142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435142.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP28;transcript_id=HG003_chrY_T0001495;gene_id=HG003_chrY_G0000524;Parent=HG003_chrY_T0001495;transcript_name=HG003_chrY_T0001495;gene_name=USP9YP28;ID=intron:HG003_chrY_T0001495:0;Name=USP9YP28;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19694189	19694363	.	-	.	source_transcript=ENST00000435142.1;source_transcript_name=USP9YP28-201;source_gene=ENSG00000224151.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224151.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000435142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435142.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP28;transcript_id=HG003_chrY_T0001495;gene_id=HG003_chrY_G0000524;Parent=HG003_chrY_T0001495;transcript_name=HG003_chrY_T0001495;gene_name=USP9YP28;ID=exon:HG003_chrY_T0001495:1;Name=USP9YP28;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19694364	19694604	.	-	.	source_transcript=ENST00000435142.1;source_transcript_name=USP9YP28-201;source_gene=ENSG00000224151.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224151.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000435142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435142.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP28;transcript_id=HG003_chrY_T0001495;gene_id=HG003_chrY_G0000524;Parent=HG003_chrY_T0001495;transcript_name=HG003_chrY_T0001495;gene_name=USP9YP28;ID=intron:HG003_chrY_T0001495:1;Name=USP9YP28;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19694605	19694633	.	-	.	source_transcript=ENST00000435142.1;source_transcript_name=USP9YP28-201;source_gene=ENSG00000224151.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224151.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000435142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435142.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP28;transcript_id=HG003_chrY_T0001495;gene_id=HG003_chrY_G0000524;Parent=HG003_chrY_T0001495;transcript_name=HG003_chrY_T0001495;gene_name=USP9YP28;ID=exon:HG003_chrY_T0001495:2;Name=USP9YP28;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19694634	19694765	.	-	.	source_transcript=ENST00000435142.1;source_transcript_name=USP9YP28-201;source_gene=ENSG00000224151.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224151.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000435142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435142.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP28;transcript_id=HG003_chrY_T0001495;gene_id=HG003_chrY_G0000524;Parent=HG003_chrY_T0001495;transcript_name=HG003_chrY_T0001495;gene_name=USP9YP28;ID=intron:HG003_chrY_T0001495:2;Name=USP9YP28;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19694766	19694922	.	-	.	source_transcript=ENST00000435142.1;source_transcript_name=USP9YP28-201;source_gene=ENSG00000224151.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224151.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000435142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435142.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP28;transcript_id=HG003_chrY_T0001495;gene_id=HG003_chrY_G0000524;Parent=HG003_chrY_T0001495;transcript_name=HG003_chrY_T0001495;gene_name=USP9YP28;ID=exon:HG003_chrY_T0001495:3;Name=USP9YP28;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19694923	19699894	.	-	.	source_transcript=ENST00000435142.1;source_transcript_name=USP9YP28-201;source_gene=ENSG00000224151.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224151.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000435142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435142.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP28;transcript_id=HG003_chrY_T0001495;gene_id=HG003_chrY_G0000524;Parent=HG003_chrY_T0001495;transcript_name=HG003_chrY_T0001495;gene_name=USP9YP28;ID=intron:HG003_chrY_T0001495:3;Name=USP9YP28;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19699895	19700026	.	-	.	source_transcript=ENST00000435142.1;source_transcript_name=USP9YP28-201;source_gene=ENSG00000224151.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224151.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000435142.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435142.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP28;transcript_id=HG003_chrY_T0001495;gene_id=HG003_chrY_G0000524;Parent=HG003_chrY_T0001495;transcript_name=HG003_chrY_T0001495;gene_name=USP9YP28;ID=exon:HG003_chrY_T0001495:4;Name=USP9YP28;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19694444	19694605	.	-	.	source_gene_common_name=RNU1-41P;source_gene=ENSG00000251970.1;gene_id=HG003_chrY_G0000525;gene_biotype=snRNA;gene_name=RNU1-41P;gene_sources=liftoff;ID=HG003_chrY_G0000525;Name=RNU1-41P
HG003_chrY	CAT	transcript	19694444	19694605	1000	-	.	source_transcript=ENST00000516161.1;source_transcript_name=RNU1-41P-201;source_gene=ENSG00000251970.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000251970.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516161.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-41P;transcript_id=HG003_chrY_T0001496;gene_id=HG003_chrY_G0000525;Parent=HG003_chrY_G0000525;transcript_name=HG003_chrY_T0001496;gene_name=RNU1-41P;ID=HG003_chrY_T0001496;Name=RNU1-41P
HG003_chrY	CAT	exon	19694444	19694605	.	-	.	source_transcript=ENST00000516161.1;source_transcript_name=RNU1-41P-201;source_gene=ENSG00000251970.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000251970.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516161.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516161.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-41P;transcript_id=HG003_chrY_T0001496;gene_id=HG003_chrY_G0000525;Parent=HG003_chrY_T0001496;transcript_name=HG003_chrY_T0001496;gene_name=RNU1-41P;ID=exon:HG003_chrY_T0001496:0;Name=RNU1-41P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19708984	19727994	.	+	.	source_gene_common_name=OFD1P7Y;source_gene=ENSG00000238088.1;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;gene_id=HG003_chrY_G0000526;gene_biotype=unprocessed_pseudogene;gene_name=OFD1P7Y;gene_sources=liftoff;ID=HG003_chrY_G0000526;Name=OFD1P7Y
HG003_chrY	CAT	transcript	19708984	19727994	1000	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_G0000526;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=HG003_chrY_T0001497;Name=OFD1P7Y
HG003_chrY	CAT	exon	19708984	19709055	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=exon:HG003_chrY_T0001497:0;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19709056	19710248	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=intron:HG003_chrY_T0001497:0;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19710249	19710449	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=exon:HG003_chrY_T0001497:1;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19710450	19712666	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=intron:HG003_chrY_T0001497:1;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19712667	19712731	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=exon:HG003_chrY_T0001497:2;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19712732	19712818	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=intron:HG003_chrY_T0001497:2;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19712819	19712848	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=exon:HG003_chrY_T0001497:3;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19712849	19717062	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=intron:HG003_chrY_T0001497:3;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19717063	19717199	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=exon:HG003_chrY_T0001497:4;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19717200	19717547	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=intron:HG003_chrY_T0001497:4;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19717548	19717663	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=exon:HG003_chrY_T0001497:5;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19717664	19720773	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=intron:HG003_chrY_T0001497:5;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19720774	19720880	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=exon:HG003_chrY_T0001497:6;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19720881	19723048	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=intron:HG003_chrY_T0001497:6;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19723049	19723166	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=exon:HG003_chrY_T0001497:7;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19723167	19724947	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=intron:HG003_chrY_T0001497:7;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19724948	19725015	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=exon:HG003_chrY_T0001497:8;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19725016	19726127	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=intron:HG003_chrY_T0001497:8;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19726128	19726227	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=exon:HG003_chrY_T0001497:9;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19726228	19727853	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=intron:HG003_chrY_T0001497:9;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19727854	19727994	.	+	.	source_transcript=ENST00000454643.1;source_transcript_name=OFD1P7Y-201;source_gene=ENSG00000238088.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000238088.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000454643.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454643.1;transcript_score=299.827;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P7Y;alternative_source_transcripts=ENST00000454643.1,ENST00000454643.1;transcript_id=HG003_chrY_T0001497;gene_id=HG003_chrY_G0000526;Parent=HG003_chrY_T0001497;transcript_name=HG003_chrY_T0001497;gene_name=OFD1P7Y;ID=exon:HG003_chrY_T0001497:10;Name=OFD1P7Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19732816	19732986	.	+	.	source_gene_common_name=MTCYBP2;source_gene=ENSG00000217179.1;alternative_source_transcripts=ENST00000407745.1,ENST00000407745.1;gene_id=HG003_chrY_G0000527;gene_biotype=processed_pseudogene;gene_name=MTCYBP2;gene_sources=liftoff;ID=HG003_chrY_G0000527;Name=MTCYBP2
HG003_chrY	CAT	transcript	19732816	19732986	1000	+	.	source_transcript=ENST00000407745.1;source_transcript_name=MTCYBP2-201;source_gene=ENSG00000217179.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000217179.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000407745.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000407745.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MTCYBP2;alternative_source_transcripts=ENST00000407745.1,ENST00000407745.1;transcript_id=HG003_chrY_T0001498;gene_id=HG003_chrY_G0000527;Parent=HG003_chrY_G0000527;transcript_name=HG003_chrY_T0001498;gene_name=MTCYBP2;ID=HG003_chrY_T0001498;Name=MTCYBP2
HG003_chrY	CAT	exon	19732816	19732986	.	+	.	source_transcript=ENST00000407745.1;source_transcript_name=MTCYBP2-201;source_gene=ENSG00000217179.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000217179.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000407745.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000407745.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=MTCYBP2;alternative_source_transcripts=ENST00000407745.1,ENST00000407745.1;transcript_id=HG003_chrY_T0001498;gene_id=HG003_chrY_G0000527;Parent=HG003_chrY_T0001498;transcript_name=HG003_chrY_T0001498;gene_name=MTCYBP2;ID=exon:HG003_chrY_T0001498:0;Name=MTCYBP2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19845903	19847126	.	+	.	source_gene_common_name=ZNF839P1;source_gene=ENSG00000217896.2;alternative_source_transcripts=ENST00000403487.2,ENST00000403487.2;gene_id=HG003_chrY_G0000528;gene_biotype=processed_pseudogene;gene_name=ZNF839P1;gene_sources=liftoff;ID=HG003_chrY_G0000528;Name=ZNF839P1
HG003_chrY	CAT	transcript	19845903	19847126	1000	+	.	source_transcript=ENST00000403487.2;source_transcript_name=ZNF839P1-201;source_gene=ENSG00000217896.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000217896.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000403487.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000403487.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF839P1;alternative_source_transcripts=ENST00000403487.2,ENST00000403487.2;transcript_id=HG003_chrY_T0001499;gene_id=HG003_chrY_G0000528;Parent=HG003_chrY_G0000528;transcript_name=HG003_chrY_T0001499;gene_name=ZNF839P1;ID=HG003_chrY_T0001499;Name=ZNF839P1
HG003_chrY	CAT	exon	19845903	19846582	.	+	.	source_transcript=ENST00000403487.2;source_transcript_name=ZNF839P1-201;source_gene=ENSG00000217896.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000217896.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000403487.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000403487.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF839P1;alternative_source_transcripts=ENST00000403487.2,ENST00000403487.2;transcript_id=HG003_chrY_T0001499;gene_id=HG003_chrY_G0000528;Parent=HG003_chrY_T0001499;transcript_name=HG003_chrY_T0001499;gene_name=ZNF839P1;ID=exon:HG003_chrY_T0001499:0;Name=ZNF839P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19846583	19846945	.	+	.	source_transcript=ENST00000403487.2;source_transcript_name=ZNF839P1-201;source_gene=ENSG00000217896.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000217896.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000403487.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000403487.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF839P1;alternative_source_transcripts=ENST00000403487.2,ENST00000403487.2;transcript_id=HG003_chrY_T0001499;gene_id=HG003_chrY_G0000528;Parent=HG003_chrY_T0001499;transcript_name=HG003_chrY_T0001499;gene_name=ZNF839P1;ID=intron:HG003_chrY_T0001499:0;Name=ZNF839P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19846946	19847126	.	+	.	source_transcript=ENST00000403487.2;source_transcript_name=ZNF839P1-201;source_gene=ENSG00000217896.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000217896.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000403487.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000403487.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF839P1;alternative_source_transcripts=ENST00000403487.2,ENST00000403487.2;transcript_id=HG003_chrY_T0001499;gene_id=HG003_chrY_G0000528;Parent=HG003_chrY_T0001499;transcript_name=HG003_chrY_T0001499;gene_name=ZNF839P1;ID=exon:HG003_chrY_T0001499:1;Name=ZNF839P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19853196	19853438	.	-	.	source_gene_common_name=CD24P4;source_gene=ENSG00000185275.6;alternative_source_transcripts=ENST00000382840.3,ENST00000382840.3;gene_id=HG003_chrY_G0000529;gene_biotype=processed_pseudogene;gene_name=CD24P4;gene_sources=liftoff;ID=HG003_chrY_G0000529;Name=CD24P4
HG003_chrY	CAT	transcript	19853196	19853438	1000	-	.	source_transcript=ENST00000382840.3;source_transcript_name=CD24P4-201;source_gene=ENSG00000185275.6;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000185275.6;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000382840.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382840.3;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD24P4;alternative_source_transcripts=ENST00000382840.3,ENST00000382840.3;transcript_id=HG003_chrY_T0001500;gene_id=HG003_chrY_G0000529;Parent=HG003_chrY_G0000529;transcript_name=HG003_chrY_T0001500;gene_name=CD24P4;ID=HG003_chrY_T0001500;Name=CD24P4
HG003_chrY	CAT	exon	19853196	19853438	.	-	.	source_transcript=ENST00000382840.3;source_transcript_name=CD24P4-201;source_gene=ENSG00000185275.6;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000185275.6;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000382840.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382840.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CD24P4;alternative_source_transcripts=ENST00000382840.3,ENST00000382840.3;transcript_id=HG003_chrY_T0001500;gene_id=HG003_chrY_G0000529;Parent=HG003_chrY_T0001500;transcript_name=HG003_chrY_T0001500;gene_name=CD24P4;ID=exon:HG003_chrY_T0001500:0;Name=CD24P4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19879712	19879816	.	-	.	source_gene_common_name=RNU6-255P;source_gene=ENSG00000252766.1;alternative_source_transcripts=ENST00000516957.1,ENST00000516957.1;gene_id=HG003_chrY_G0000530;gene_biotype=snRNA;gene_name=RNU6-255P;gene_sources=liftoff;ID=HG003_chrY_G0000530;Name=RNU6-255P
HG003_chrY	CAT	transcript	19879712	19879816	1000	-	.	source_transcript=ENST00000516957.1;source_transcript_name=RNU6-255P-201;source_gene=ENSG00000252766.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252766.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516957.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516957.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-255P;alternative_source_transcripts=ENST00000516957.1,ENST00000516957.1;transcript_id=HG003_chrY_T0001501;gene_id=HG003_chrY_G0000530;Parent=HG003_chrY_G0000530;transcript_name=HG003_chrY_T0001501;gene_name=RNU6-255P;ID=HG003_chrY_T0001501;Name=RNU6-255P
HG003_chrY	CAT	exon	19879712	19879816	.	-	.	source_transcript=ENST00000516957.1;source_transcript_name=RNU6-255P-201;source_gene=ENSG00000252766.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252766.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516957.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516957.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-255P;alternative_source_transcripts=ENST00000516957.1,ENST00000516957.1;transcript_id=HG003_chrY_T0001501;gene_id=HG003_chrY_G0000530;Parent=HG003_chrY_T0001501;transcript_name=HG003_chrY_T0001501;gene_name=RNU6-255P;ID=exon:HG003_chrY_T0001501:0;Name=RNU6-255P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	19936863	19947790	.	+	.	source_gene_common_name=ENSG00000310485;source_gene=ENSG00000310485.1;alternative_source_transcripts=ENST00000850331.1,ENST00000850331.1;gene_id=HG003_chrY_G0000531;gene_biotype=lncRNA;gene_name=ENSG00000310485;gene_sources=liftoff;ID=HG003_chrY_G0000531;Name=ENSG00000310485
HG003_chrY	CAT	transcript	19936863	19947790	1000	+	.	source_transcript=ENST00000850331.1;source_transcript_name=ENST00000850331;source_gene=ENSG00000310485.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310485.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850331.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310485;alternative_source_transcripts=ENST00000850331.1,ENST00000850331.1;transcript_id=HG003_chrY_T0001502;gene_id=HG003_chrY_G0000531;Parent=HG003_chrY_G0000531;transcript_name=HG003_chrY_T0001502;gene_name=ENSG00000310485;ID=HG003_chrY_T0001502;Name=ENSG00000310485
HG003_chrY	CAT	exon	19936863	19936986	.	+	.	source_transcript=ENST00000850331.1;source_transcript_name=ENST00000850331;source_gene=ENSG00000310485.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310485.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850331.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310485;alternative_source_transcripts=ENST00000850331.1,ENST00000850331.1;transcript_id=HG003_chrY_T0001502;gene_id=HG003_chrY_G0000531;Parent=HG003_chrY_T0001502;transcript_name=HG003_chrY_T0001502;gene_name=ENSG00000310485;ID=exon:HG003_chrY_T0001502:0;Name=ENSG00000310485;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19936987	19947228	.	+	.	source_transcript=ENST00000850331.1;source_transcript_name=ENST00000850331;source_gene=ENSG00000310485.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310485.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850331.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310485;alternative_source_transcripts=ENST00000850331.1,ENST00000850331.1;transcript_id=HG003_chrY_T0001502;gene_id=HG003_chrY_G0000531;Parent=HG003_chrY_T0001502;transcript_name=HG003_chrY_T0001502;gene_name=ENSG00000310485;ID=intron:HG003_chrY_T0001502:0;Name=ENSG00000310485;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19947229	19947790	.	+	.	source_transcript=ENST00000850331.1;source_transcript_name=ENST00000850331;source_gene=ENSG00000310485.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310485.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850331.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310485;alternative_source_transcripts=ENST00000850331.1,ENST00000850331.1;transcript_id=HG003_chrY_T0001502;gene_id=HG003_chrY_G0000531;Parent=HG003_chrY_T0001502;transcript_name=HG003_chrY_T0001502;gene_name=ENSG00000310485;ID=exon:HG003_chrY_T0001502:1;Name=ENSG00000310485;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	19936910	19937246	1000	+	.	source_transcript=ENST00000850332.1;source_transcript_name=ENST00000850332;source_gene=ENSG00000310485.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310485.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850332.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310485;alternative_source_transcripts=ENST00000850332.1,ENST00000850332.1;transcript_id=HG003_chrY_T0001503;gene_id=HG003_chrY_G0000531;Parent=HG003_chrY_G0000531;transcript_name=HG003_chrY_T0001503;gene_name=ENSG00000310485;ID=HG003_chrY_T0001503;Name=ENSG00000310485
HG003_chrY	CAT	exon	19936910	19936986	.	+	.	source_transcript=ENST00000850332.1;source_transcript_name=ENST00000850332;source_gene=ENSG00000310485.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310485.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850332.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310485;alternative_source_transcripts=ENST00000850332.1,ENST00000850332.1;transcript_id=HG003_chrY_T0001503;gene_id=HG003_chrY_G0000531;Parent=HG003_chrY_T0001503;transcript_name=HG003_chrY_T0001503;gene_name=ENSG00000310485;ID=exon:HG003_chrY_T0001503:0;Name=ENSG00000310485;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	19936987	19937074	.	+	.	source_transcript=ENST00000850332.1;source_transcript_name=ENST00000850332;source_gene=ENSG00000310485.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310485.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850332.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310485;alternative_source_transcripts=ENST00000850332.1,ENST00000850332.1;transcript_id=HG003_chrY_T0001503;gene_id=HG003_chrY_G0000531;Parent=HG003_chrY_T0001503;transcript_name=HG003_chrY_T0001503;gene_name=ENSG00000310485;ID=intron:HG003_chrY_T0001503:0;Name=ENSG00000310485;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	19937075	19937246	.	+	.	source_transcript=ENST00000850332.1;source_transcript_name=ENST00000850332;source_gene=ENSG00000310485.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310485.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850332.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310485;alternative_source_transcripts=ENST00000850332.1,ENST00000850332.1;transcript_id=HG003_chrY_T0001503;gene_id=HG003_chrY_G0000531;Parent=HG003_chrY_T0001503;transcript_name=HG003_chrY_T0001503;gene_name=ENSG00000310485;ID=exon:HG003_chrY_T0001503:1;Name=ENSG00000310485;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20114687	20121602	.	-	.	source_gene_common_name=ENSG00000274282;source_gene=ENSG00000274282.1;alternative_source_transcripts=ENST00000615809.1,ENST00000615809.1;gene_id=HG003_chrY_G0000532;gene_biotype=processed_pseudogene;gene_name=ENSG00000274282;gene_sources=liftoff;ID=HG003_chrY_G0000532;Name=ENSG00000274282
HG003_chrY	CAT	transcript	20114687	20121602	1000	-	.	source_transcript=ENST00000615809.1;source_transcript_name=ENST00000615809;source_gene=ENSG00000274282.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274282.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000615809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615809.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274282;alternative_source_transcripts=ENST00000615809.1,ENST00000615809.1;transcript_id=HG003_chrY_T0001504;gene_id=HG003_chrY_G0000532;Parent=HG003_chrY_G0000532;transcript_name=HG003_chrY_T0001504;gene_name=ENSG00000274282;ID=HG003_chrY_T0001504;Name=ENSG00000274282
HG003_chrY	CAT	exon	20114687	20115179	.	-	.	source_transcript=ENST00000615809.1;source_transcript_name=ENST00000615809;source_gene=ENSG00000274282.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274282.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000615809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615809.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274282;alternative_source_transcripts=ENST00000615809.1,ENST00000615809.1;transcript_id=HG003_chrY_T0001504;gene_id=HG003_chrY_G0000532;Parent=HG003_chrY_T0001504;transcript_name=HG003_chrY_T0001504;gene_name=ENSG00000274282;ID=exon:HG003_chrY_T0001504:0;Name=ENSG00000274282;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20115180	20121253	.	-	.	source_transcript=ENST00000615809.1;source_transcript_name=ENST00000615809;source_gene=ENSG00000274282.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274282.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000615809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615809.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274282;alternative_source_transcripts=ENST00000615809.1,ENST00000615809.1;transcript_id=HG003_chrY_T0001504;gene_id=HG003_chrY_G0000532;Parent=HG003_chrY_T0001504;transcript_name=HG003_chrY_T0001504;gene_name=ENSG00000274282;ID=intron:HG003_chrY_T0001504:0;Name=ENSG00000274282;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20121254	20121602	.	-	.	source_transcript=ENST00000615809.1;source_transcript_name=ENST00000615809;source_gene=ENSG00000274282.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274282.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000615809.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615809.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274282;alternative_source_transcripts=ENST00000615809.1,ENST00000615809.1;transcript_id=HG003_chrY_T0001504;gene_id=HG003_chrY_G0000532;Parent=HG003_chrY_T0001504;transcript_name=HG003_chrY_T0001504;gene_name=ENSG00000274282;ID=exon:HG003_chrY_T0001504:1;Name=ENSG00000274282;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20188330	20189334	.	+	.	source_gene_common_name=GAPDHP19;source_gene=ENSG00000234529.2;alternative_source_transcripts=ENST00000431768.2,ENST00000431768.2;gene_id=HG003_chrY_G0000533;gene_biotype=processed_pseudogene;gene_name=GAPDHP19;gene_sources=liftoff;ID=HG003_chrY_G0000533;Name=GAPDHP19
HG003_chrY	CAT	transcript	20188330	20189334	1000	+	.	source_transcript=ENST00000431768.2;source_transcript_name=GAPDHP19-201;source_gene=ENSG00000234529.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234529.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000431768.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431768.2;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GAPDHP19;alternative_source_transcripts=ENST00000431768.2,ENST00000431768.2;transcript_id=HG003_chrY_T0001505;gene_id=HG003_chrY_G0000533;Parent=HG003_chrY_G0000533;transcript_name=HG003_chrY_T0001505;gene_name=GAPDHP19;ID=HG003_chrY_T0001505;Name=GAPDHP19
HG003_chrY	CAT	exon	20188330	20189334	.	+	.	source_transcript=ENST00000431768.2;source_transcript_name=GAPDHP19-201;source_gene=ENSG00000234529.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234529.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000431768.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000431768.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GAPDHP19;alternative_source_transcripts=ENST00000431768.2,ENST00000431768.2;transcript_id=HG003_chrY_T0001505;gene_id=HG003_chrY_G0000533;Parent=HG003_chrY_T0001505;transcript_name=HG003_chrY_T0001505;gene_name=GAPDHP19;ID=exon:HG003_chrY_T0001505:0;Name=GAPDHP19;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20316232	20428057	.	-	.	source_gene_common_name=BCORP1;source_gene=ENSG00000291031.2;gene_id=HG003_chrY_G0000534;gene_biotype=lncRNA;gene_name=BCORP1;gene_sources=liftoff;ID=HG003_chrY_G0000534;Name=BCORP1
HG003_chrY	CAT	transcript	20316232	20363959	1000	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=HG003_chrY_T0001506;Name=BCORP1
HG003_chrY	CAT	exon	20316232	20317665	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=exon:HG003_chrY_T0001506:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20317666	20319709	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=intron:HG003_chrY_T0001506:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20319710	20319865	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=exon:HG003_chrY_T0001506:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20319866	20320074	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=intron:HG003_chrY_T0001506:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20320075	20320152	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=exon:HG003_chrY_T0001506:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20320153	20325888	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=intron:HG003_chrY_T0001506:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20325889	20326010	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=exon:HG003_chrY_T0001506:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20326011	20327238	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=intron:HG003_chrY_T0001506:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20327239	20328157	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=exon:HG003_chrY_T0001506:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20328158	20334687	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=intron:HG003_chrY_T0001506:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20334688	20334927	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=exon:HG003_chrY_T0001506:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20334928	20335422	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=intron:HG003_chrY_T0001506:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20335423	20335686	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=exon:HG003_chrY_T0001506:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20335687	20340951	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=intron:HG003_chrY_T0001506:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20340952	20341077	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=exon:HG003_chrY_T0001506:7;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20341078	20363814	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=intron:HG003_chrY_T0001506:7;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20363815	20363959	.	-	.	source_transcript=ENST00000441139.6;source_transcript_name=BCORP1-203;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441139.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000441139.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001506;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001506;transcript_name=HG003_chrY_T0001506;gene_name=BCORP1;ID=exon:HG003_chrY_T0001506:8;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20317113	20363919	1000	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=HG003_chrY_T0001507;Name=BCORP1
HG003_chrY	CAT	exon	20317113	20317665	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=exon:HG003_chrY_T0001507:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20317666	20317857	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=intron:HG003_chrY_T0001507:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20317858	20317918	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=exon:HG003_chrY_T0001507:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20317919	20319709	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=intron:HG003_chrY_T0001507:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20319710	20319865	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=exon:HG003_chrY_T0001507:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20319866	20320074	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=intron:HG003_chrY_T0001507:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20320075	20320152	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=exon:HG003_chrY_T0001507:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20320153	20320744	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=intron:HG003_chrY_T0001507:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20320745	20320890	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=exon:HG003_chrY_T0001507:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20320891	20325888	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=intron:HG003_chrY_T0001507:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20325889	20326010	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=exon:HG003_chrY_T0001507:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20326011	20327238	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=intron:HG003_chrY_T0001507:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20327239	20328157	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=exon:HG003_chrY_T0001507:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20328158	20334687	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=intron:HG003_chrY_T0001507:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20334688	20334927	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=exon:HG003_chrY_T0001507:7;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20334928	20335422	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=intron:HG003_chrY_T0001507:7;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20335423	20335686	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=exon:HG003_chrY_T0001507:8;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20335687	20340951	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=intron:HG003_chrY_T0001507:8;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20340952	20341077	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=exon:HG003_chrY_T0001507:9;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20341078	20363814	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=intron:HG003_chrY_T0001507:9;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20363815	20363919	.	-	.	source_transcript=ENST00000400605.5;source_transcript_name=BCORP1-202;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400605.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000400605.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001507;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001507;transcript_name=HG003_chrY_T0001507;gene_name=BCORP1;ID=exon:HG003_chrY_T0001507:10;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20317195	20427869	1000	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=HG003_chrY_T0001508;Name=BCORP1
HG003_chrY	CAT	exon	20317195	20317665	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=exon:HG003_chrY_T0001508:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20317666	20319709	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=intron:HG003_chrY_T0001508:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20319710	20319865	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=exon:HG003_chrY_T0001508:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20319866	20320074	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=intron:HG003_chrY_T0001508:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20320075	20320152	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=exon:HG003_chrY_T0001508:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20320153	20320744	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=intron:HG003_chrY_T0001508:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20320745	20320890	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=exon:HG003_chrY_T0001508:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20320891	20325888	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=intron:HG003_chrY_T0001508:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20325889	20326010	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=exon:HG003_chrY_T0001508:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20326011	20327238	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=intron:HG003_chrY_T0001508:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20327239	20328157	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=exon:HG003_chrY_T0001508:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20328158	20334687	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=intron:HG003_chrY_T0001508:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20334688	20334927	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=exon:HG003_chrY_T0001508:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20334928	20335422	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=intron:HG003_chrY_T0001508:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20335423	20335686	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=exon:HG003_chrY_T0001508:7;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20335687	20340951	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=intron:HG003_chrY_T0001508:7;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20340952	20341077	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=exon:HG003_chrY_T0001508:8;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20341078	20427758	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=intron:HG003_chrY_T0001508:8;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427869	.	-	.	source_transcript=ENST00000650676.1;source_transcript_name=BCORP1-204;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000650676.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000650676.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001508;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001508;transcript_name=HG003_chrY_T0001508;gene_name=BCORP1;ID=exon:HG003_chrY_T0001508:9;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20318830	20320890	1000	-	.	source_transcript=ENST00000840635.1;source_transcript_name=BCORP1-266;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840635.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840635.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001510;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001510;gene_name=BCORP1;ID=HG003_chrY_T0001510;Name=BCORP1
HG003_chrY	CAT	exon	20318830	20319865	.	-	.	source_transcript=ENST00000840635.1;source_transcript_name=BCORP1-266;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840635.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840635.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001510;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001510;transcript_name=HG003_chrY_T0001510;gene_name=BCORP1;ID=exon:HG003_chrY_T0001510:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20319866	20320074	.	-	.	source_transcript=ENST00000840635.1;source_transcript_name=BCORP1-266;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840635.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840635.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001510;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001510;transcript_name=HG003_chrY_T0001510;gene_name=BCORP1;ID=intron:HG003_chrY_T0001510:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20320075	20320152	.	-	.	source_transcript=ENST00000840635.1;source_transcript_name=BCORP1-266;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840635.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840635.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001510;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001510;transcript_name=HG003_chrY_T0001510;gene_name=BCORP1;ID=exon:HG003_chrY_T0001510:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20320153	20320744	.	-	.	source_transcript=ENST00000840635.1;source_transcript_name=BCORP1-266;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840635.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840635.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001510;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001510;transcript_name=HG003_chrY_T0001510;gene_name=BCORP1;ID=intron:HG003_chrY_T0001510:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20320745	20320890	.	-	.	source_transcript=ENST00000840635.1;source_transcript_name=BCORP1-266;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840635.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840635.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001510;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001510;transcript_name=HG003_chrY_T0001510;gene_name=BCORP1;ID=exon:HG003_chrY_T0001510:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20397826	20427807	1000	-	.	source_transcript=ENST00000760991.1;source_transcript_name=BCORP1-207;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760991.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760991.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001511;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001511;gene_name=BCORP1;ID=HG003_chrY_T0001511;Name=BCORP1
HG003_chrY	CAT	exon	20397826	20397990	.	-	.	source_transcript=ENST00000760991.1;source_transcript_name=BCORP1-207;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760991.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760991.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001511;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001511;transcript_name=HG003_chrY_T0001511;gene_name=BCORP1;ID=exon:HG003_chrY_T0001511:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20397991	20400373	.	-	.	source_transcript=ENST00000760991.1;source_transcript_name=BCORP1-207;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760991.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760991.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001511;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001511;transcript_name=HG003_chrY_T0001511;gene_name=BCORP1;ID=intron:HG003_chrY_T0001511:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20400374	20400600	.	-	.	source_transcript=ENST00000760991.1;source_transcript_name=BCORP1-207;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760991.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760991.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001511;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001511;transcript_name=HG003_chrY_T0001511;gene_name=BCORP1;ID=exon:HG003_chrY_T0001511:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20400601	20418816	.	-	.	source_transcript=ENST00000760991.1;source_transcript_name=BCORP1-207;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760991.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760991.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001511;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001511;transcript_name=HG003_chrY_T0001511;gene_name=BCORP1;ID=intron:HG003_chrY_T0001511:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000760991.1;source_transcript_name=BCORP1-207;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760991.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760991.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001511;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001511;transcript_name=HG003_chrY_T0001511;gene_name=BCORP1;ID=exon:HG003_chrY_T0001511:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000760991.1;source_transcript_name=BCORP1-207;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760991.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760991.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001511;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001511;transcript_name=HG003_chrY_T0001511;gene_name=BCORP1;ID=intron:HG003_chrY_T0001511:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427807	.	-	.	source_transcript=ENST00000760991.1;source_transcript_name=BCORP1-207;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760991.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760991.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001511;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001511;transcript_name=HG003_chrY_T0001511;gene_name=BCORP1;ID=exon:HG003_chrY_T0001511:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20397827	20427784	1000	-	.	source_transcript=ENST00000760992.1;source_transcript_name=BCORP1-208;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760992.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760992.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001512;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001512;gene_name=BCORP1;ID=HG003_chrY_T0001512;Name=BCORP1
HG003_chrY	CAT	exon	20397827	20397990	.	-	.	source_transcript=ENST00000760992.1;source_transcript_name=BCORP1-208;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760992.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760992.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001512;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001512;transcript_name=HG003_chrY_T0001512;gene_name=BCORP1;ID=exon:HG003_chrY_T0001512:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20397991	20400373	.	-	.	source_transcript=ENST00000760992.1;source_transcript_name=BCORP1-208;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760992.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760992.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001512;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001512;transcript_name=HG003_chrY_T0001512;gene_name=BCORP1;ID=intron:HG003_chrY_T0001512:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20400374	20400600	.	-	.	source_transcript=ENST00000760992.1;source_transcript_name=BCORP1-208;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760992.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760992.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001512;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001512;transcript_name=HG003_chrY_T0001512;gene_name=BCORP1;ID=exon:HG003_chrY_T0001512:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20400601	20400968	.	-	.	source_transcript=ENST00000760992.1;source_transcript_name=BCORP1-208;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760992.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760992.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001512;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001512;transcript_name=HG003_chrY_T0001512;gene_name=BCORP1;ID=intron:HG003_chrY_T0001512:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20400969	20401080	.	-	.	source_transcript=ENST00000760992.1;source_transcript_name=BCORP1-208;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760992.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760992.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001512;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001512;transcript_name=HG003_chrY_T0001512;gene_name=BCORP1;ID=exon:HG003_chrY_T0001512:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20401081	20418816	.	-	.	source_transcript=ENST00000760992.1;source_transcript_name=BCORP1-208;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760992.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760992.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001512;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001512;transcript_name=HG003_chrY_T0001512;gene_name=BCORP1;ID=intron:HG003_chrY_T0001512:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000760992.1;source_transcript_name=BCORP1-208;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760992.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760992.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001512;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001512;transcript_name=HG003_chrY_T0001512;gene_name=BCORP1;ID=exon:HG003_chrY_T0001512:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000760992.1;source_transcript_name=BCORP1-208;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760992.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760992.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001512;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001512;transcript_name=HG003_chrY_T0001512;gene_name=BCORP1;ID=intron:HG003_chrY_T0001512:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000760992.1;source_transcript_name=BCORP1-208;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760992.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760992.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001512;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001512;transcript_name=HG003_chrY_T0001512;gene_name=BCORP1;ID=exon:HG003_chrY_T0001512:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000760992.1;source_transcript_name=BCORP1-208;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760992.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760992.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001512;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001512;transcript_name=HG003_chrY_T0001512;gene_name=BCORP1;ID=intron:HG003_chrY_T0001512:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427784	.	-	.	source_transcript=ENST00000760992.1;source_transcript_name=BCORP1-208;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760992.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760992.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001512;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001512;transcript_name=HG003_chrY_T0001512;gene_name=BCORP1;ID=exon:HG003_chrY_T0001512:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20400215	20427821	1000	-	.	source_transcript=ENST00000760993.1;source_transcript_name=BCORP1-209;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760993.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001513;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001513;gene_name=BCORP1;ID=HG003_chrY_T0001513;Name=BCORP1
HG003_chrY	CAT	exon	20400215	20400600	.	-	.	source_transcript=ENST00000760993.1;source_transcript_name=BCORP1-209;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001513;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001513;transcript_name=HG003_chrY_T0001513;gene_name=BCORP1;ID=exon:HG003_chrY_T0001513:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20400601	20400968	.	-	.	source_transcript=ENST00000760993.1;source_transcript_name=BCORP1-209;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001513;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001513;transcript_name=HG003_chrY_T0001513;gene_name=BCORP1;ID=intron:HG003_chrY_T0001513:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20400969	20401080	.	-	.	source_transcript=ENST00000760993.1;source_transcript_name=BCORP1-209;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001513;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001513;transcript_name=HG003_chrY_T0001513;gene_name=BCORP1;ID=exon:HG003_chrY_T0001513:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20401081	20418800	.	-	.	source_transcript=ENST00000760993.1;source_transcript_name=BCORP1-209;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001513;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001513;transcript_name=HG003_chrY_T0001513;gene_name=BCORP1;ID=intron:HG003_chrY_T0001513:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000760993.1;source_transcript_name=BCORP1-209;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001513;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001513;transcript_name=HG003_chrY_T0001513;gene_name=BCORP1;ID=exon:HG003_chrY_T0001513:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000760993.1;source_transcript_name=BCORP1-209;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001513;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001513;transcript_name=HG003_chrY_T0001513;gene_name=BCORP1;ID=intron:HG003_chrY_T0001513:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427821	.	-	.	source_transcript=ENST00000760993.1;source_transcript_name=BCORP1-209;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001513;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001513;transcript_name=HG003_chrY_T0001513;gene_name=BCORP1;ID=exon:HG003_chrY_T0001513:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20400218	20427807	1000	-	.	source_transcript=ENST00000760994.1;source_transcript_name=BCORP1-210;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760994.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001514;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001514;gene_name=BCORP1;ID=HG003_chrY_T0001514;Name=BCORP1
HG003_chrY	CAT	exon	20400218	20400600	.	-	.	source_transcript=ENST00000760994.1;source_transcript_name=BCORP1-210;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760994.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001514;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001514;transcript_name=HG003_chrY_T0001514;gene_name=BCORP1;ID=exon:HG003_chrY_T0001514:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20400601	20418816	.	-	.	source_transcript=ENST00000760994.1;source_transcript_name=BCORP1-210;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760994.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001514;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001514;transcript_name=HG003_chrY_T0001514;gene_name=BCORP1;ID=intron:HG003_chrY_T0001514:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000760994.1;source_transcript_name=BCORP1-210;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760994.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001514;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001514;transcript_name=HG003_chrY_T0001514;gene_name=BCORP1;ID=exon:HG003_chrY_T0001514:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000760994.1;source_transcript_name=BCORP1-210;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760994.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001514;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001514;transcript_name=HG003_chrY_T0001514;gene_name=BCORP1;ID=intron:HG003_chrY_T0001514:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427807	.	-	.	source_transcript=ENST00000760994.1;source_transcript_name=BCORP1-210;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760994.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001514;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001514;transcript_name=HG003_chrY_T0001514;gene_name=BCORP1;ID=exon:HG003_chrY_T0001514:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20400267	20427786	1000	-	.	source_transcript=ENST00000760995.1;source_transcript_name=BCORP1-211;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760995.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001515;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001515;gene_name=BCORP1;ID=HG003_chrY_T0001515;Name=BCORP1
HG003_chrY	CAT	exon	20400267	20400600	.	-	.	source_transcript=ENST00000760995.1;source_transcript_name=BCORP1-211;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001515;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001515;transcript_name=HG003_chrY_T0001515;gene_name=BCORP1;ID=exon:HG003_chrY_T0001515:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20400601	20401000	.	-	.	source_transcript=ENST00000760995.1;source_transcript_name=BCORP1-211;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001515;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001515;transcript_name=HG003_chrY_T0001515;gene_name=BCORP1;ID=intron:HG003_chrY_T0001515:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20401001	20401080	.	-	.	source_transcript=ENST00000760995.1;source_transcript_name=BCORP1-211;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001515;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001515;transcript_name=HG003_chrY_T0001515;gene_name=BCORP1;ID=exon:HG003_chrY_T0001515:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20401081	20418816	.	-	.	source_transcript=ENST00000760995.1;source_transcript_name=BCORP1-211;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001515;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001515;transcript_name=HG003_chrY_T0001515;gene_name=BCORP1;ID=intron:HG003_chrY_T0001515:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000760995.1;source_transcript_name=BCORP1-211;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001515;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001515;transcript_name=HG003_chrY_T0001515;gene_name=BCORP1;ID=exon:HG003_chrY_T0001515:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000760995.1;source_transcript_name=BCORP1-211;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001515;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001515;transcript_name=HG003_chrY_T0001515;gene_name=BCORP1;ID=intron:HG003_chrY_T0001515:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=ENST00000760995.1;source_transcript_name=BCORP1-211;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001515;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001515;transcript_name=HG003_chrY_T0001515;gene_name=BCORP1;ID=exon:HG003_chrY_T0001515:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20400322	20427803	1000	-	.	source_transcript=ENST00000760996.1;source_transcript_name=BCORP1-212;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760996.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760996.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001516;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001516;gene_name=BCORP1;ID=HG003_chrY_T0001516;Name=BCORP1
HG003_chrY	CAT	exon	20400322	20400600	.	-	.	source_transcript=ENST00000760996.1;source_transcript_name=BCORP1-212;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760996.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760996.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001516;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001516;transcript_name=HG003_chrY_T0001516;gene_name=BCORP1;ID=exon:HG003_chrY_T0001516:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20400601	20400968	.	-	.	source_transcript=ENST00000760996.1;source_transcript_name=BCORP1-212;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760996.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760996.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001516;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001516;transcript_name=HG003_chrY_T0001516;gene_name=BCORP1;ID=intron:HG003_chrY_T0001516:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20400969	20401080	.	-	.	source_transcript=ENST00000760996.1;source_transcript_name=BCORP1-212;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760996.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760996.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001516;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001516;transcript_name=HG003_chrY_T0001516;gene_name=BCORP1;ID=exon:HG003_chrY_T0001516:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20401081	20427758	.	-	.	source_transcript=ENST00000760996.1;source_transcript_name=BCORP1-212;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760996.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760996.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001516;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001516;transcript_name=HG003_chrY_T0001516;gene_name=BCORP1;ID=intron:HG003_chrY_T0001516:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427803	.	-	.	source_transcript=ENST00000760996.1;source_transcript_name=BCORP1-212;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760996.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760996.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001516;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001516;transcript_name=HG003_chrY_T0001516;gene_name=BCORP1;ID=exon:HG003_chrY_T0001516:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20400349	20427786	1000	-	.	source_transcript=ENST00000760997.1;source_transcript_name=BCORP1-213;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760997.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760997.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001517;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001517;gene_name=BCORP1;ID=HG003_chrY_T0001517;Name=BCORP1
HG003_chrY	CAT	exon	20400349	20400600	.	-	.	source_transcript=ENST00000760997.1;source_transcript_name=BCORP1-213;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760997.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760997.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001517;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001517;transcript_name=HG003_chrY_T0001517;gene_name=BCORP1;ID=exon:HG003_chrY_T0001517:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20400601	20418800	.	-	.	source_transcript=ENST00000760997.1;source_transcript_name=BCORP1-213;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760997.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760997.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001517;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001517;transcript_name=HG003_chrY_T0001517;gene_name=BCORP1;ID=intron:HG003_chrY_T0001517:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000760997.1;source_transcript_name=BCORP1-213;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760997.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760997.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001517;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001517;transcript_name=HG003_chrY_T0001517;gene_name=BCORP1;ID=exon:HG003_chrY_T0001517:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000760997.1;source_transcript_name=BCORP1-213;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760997.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760997.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001517;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001517;transcript_name=HG003_chrY_T0001517;gene_name=BCORP1;ID=intron:HG003_chrY_T0001517:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=ENST00000760997.1;source_transcript_name=BCORP1-213;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760997.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760997.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001517;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001517;transcript_name=HG003_chrY_T0001517;gene_name=BCORP1;ID=exon:HG003_chrY_T0001517:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20400689	20427825	1000	-	.	source_transcript=ENST00000760998.1;source_transcript_name=BCORP1-214;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760998.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760998.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001518;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001518;gene_name=BCORP1;ID=HG003_chrY_T0001518;Name=BCORP1
HG003_chrY	CAT	exon	20400689	20401080	.	-	.	source_transcript=ENST00000760998.1;source_transcript_name=BCORP1-214;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760998.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760998.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001518;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001518;transcript_name=HG003_chrY_T0001518;gene_name=BCORP1;ID=exon:HG003_chrY_T0001518:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20401081	20418816	.	-	.	source_transcript=ENST00000760998.1;source_transcript_name=BCORP1-214;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760998.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760998.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001518;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001518;transcript_name=HG003_chrY_T0001518;gene_name=BCORP1;ID=intron:HG003_chrY_T0001518:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000760998.1;source_transcript_name=BCORP1-214;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760998.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760998.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001518;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001518;transcript_name=HG003_chrY_T0001518;gene_name=BCORP1;ID=exon:HG003_chrY_T0001518:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000760998.1;source_transcript_name=BCORP1-214;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760998.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760998.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001518;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001518;transcript_name=HG003_chrY_T0001518;gene_name=BCORP1;ID=intron:HG003_chrY_T0001518:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427825	.	-	.	source_transcript=ENST00000760998.1;source_transcript_name=BCORP1-214;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760998.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760998.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001518;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001518;transcript_name=HG003_chrY_T0001518;gene_name=BCORP1;ID=exon:HG003_chrY_T0001518:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20414703	20427828	1000	-	.	source_transcript=ENST00000651484.1;source_transcript_name=BCORP1-205;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651484.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651484.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001519;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001519;gene_name=BCORP1;ID=HG003_chrY_T0001519;Name=BCORP1
HG003_chrY	CAT	exon	20414703	20417589	.	-	.	source_transcript=ENST00000651484.1;source_transcript_name=BCORP1-205;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651484.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651484.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001519;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001519;transcript_name=HG003_chrY_T0001519;gene_name=BCORP1;ID=exon:HG003_chrY_T0001519:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20417590	20418006	.	-	.	source_transcript=ENST00000651484.1;source_transcript_name=BCORP1-205;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651484.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651484.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001519;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001519;transcript_name=HG003_chrY_T0001519;gene_name=BCORP1;ID=intron:HG003_chrY_T0001519:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000651484.1;source_transcript_name=BCORP1-205;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651484.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651484.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001519;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001519;transcript_name=HG003_chrY_T0001519;gene_name=BCORP1;ID=exon:HG003_chrY_T0001519:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000651484.1;source_transcript_name=BCORP1-205;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651484.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651484.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001519;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001519;transcript_name=HG003_chrY_T0001519;gene_name=BCORP1;ID=intron:HG003_chrY_T0001519:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000651484.1;source_transcript_name=BCORP1-205;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651484.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651484.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001519;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001519;transcript_name=HG003_chrY_T0001519;gene_name=BCORP1;ID=exon:HG003_chrY_T0001519:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000651484.1;source_transcript_name=BCORP1-205;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651484.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651484.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001519;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001519;transcript_name=HG003_chrY_T0001519;gene_name=BCORP1;ID=intron:HG003_chrY_T0001519:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427828	.	-	.	source_transcript=ENST00000651484.1;source_transcript_name=BCORP1-205;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651484.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651484.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001519;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001519;transcript_name=HG003_chrY_T0001519;gene_name=BCORP1;ID=exon:HG003_chrY_T0001519:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20415653	20428045	1000	-	.	source_transcript=ENST00000693243.3;source_transcript_name=BCORP1-206;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693243.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000693243.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001520;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001520;gene_name=BCORP1;ID=HG003_chrY_T0001520;Name=BCORP1
HG003_chrY	CAT	exon	20415653	20416331	.	-	.	source_transcript=ENST00000693243.3;source_transcript_name=BCORP1-206;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693243.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000693243.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001520;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001520;transcript_name=HG003_chrY_T0001520;gene_name=BCORP1;ID=exon:HG003_chrY_T0001520:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000693243.3;source_transcript_name=BCORP1-206;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693243.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000693243.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001520;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001520;transcript_name=HG003_chrY_T0001520;gene_name=BCORP1;ID=intron:HG003_chrY_T0001520:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000693243.3;source_transcript_name=BCORP1-206;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693243.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000693243.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001520;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001520;transcript_name=HG003_chrY_T0001520;gene_name=BCORP1;ID=exon:HG003_chrY_T0001520:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000693243.3;source_transcript_name=BCORP1-206;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693243.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000693243.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001520;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001520;transcript_name=HG003_chrY_T0001520;gene_name=BCORP1;ID=intron:HG003_chrY_T0001520:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000693243.3;source_transcript_name=BCORP1-206;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693243.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000693243.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001520;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001520;transcript_name=HG003_chrY_T0001520;gene_name=BCORP1;ID=exon:HG003_chrY_T0001520:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000693243.3;source_transcript_name=BCORP1-206;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693243.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000693243.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001520;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001520;transcript_name=HG003_chrY_T0001520;gene_name=BCORP1;ID=intron:HG003_chrY_T0001520:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20428045	.	-	.	source_transcript=ENST00000693243.3;source_transcript_name=BCORP1-206;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693243.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000693243.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001520;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001520;transcript_name=HG003_chrY_T0001520;gene_name=BCORP1;ID=exon:HG003_chrY_T0001520:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416163	20428032	1000	-	.	source_transcript=ENST00000761003.1;source_transcript_name=BCORP1-219;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761003.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761003.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001521;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001521;gene_name=BCORP1;ID=HG003_chrY_T0001521;Name=BCORP1
HG003_chrY	CAT	exon	20416163	20416331	.	-	.	source_transcript=ENST00000761003.1;source_transcript_name=BCORP1-219;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761003.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761003.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001521;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001521;transcript_name=HG003_chrY_T0001521;gene_name=BCORP1;ID=exon:HG003_chrY_T0001521:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761003.1;source_transcript_name=BCORP1-219;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761003.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761003.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001521;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001521;transcript_name=HG003_chrY_T0001521;gene_name=BCORP1;ID=intron:HG003_chrY_T0001521:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761003.1;source_transcript_name=BCORP1-219;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761003.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761003.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001521;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001521;transcript_name=HG003_chrY_T0001521;gene_name=BCORP1;ID=exon:HG003_chrY_T0001521:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761003.1;source_transcript_name=BCORP1-219;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761003.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761003.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001521;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001521;transcript_name=HG003_chrY_T0001521;gene_name=BCORP1;ID=intron:HG003_chrY_T0001521:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761003.1;source_transcript_name=BCORP1-219;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761003.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761003.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001521;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001521;transcript_name=HG003_chrY_T0001521;gene_name=BCORP1;ID=exon:HG003_chrY_T0001521:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761003.1;source_transcript_name=BCORP1-219;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761003.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761003.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001521;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001521;transcript_name=HG003_chrY_T0001521;gene_name=BCORP1;ID=intron:HG003_chrY_T0001521:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20428032	.	-	.	source_transcript=ENST00000761003.1;source_transcript_name=BCORP1-219;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761003.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761003.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001521;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001521;transcript_name=HG003_chrY_T0001521;gene_name=BCORP1;ID=exon:HG003_chrY_T0001521:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416165	20428041	1000	-	.	source_transcript=ENST00000761002.1;source_transcript_name=BCORP1-218;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761002.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761002.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001522;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001522;gene_name=BCORP1;ID=HG003_chrY_T0001522;Name=BCORP1
HG003_chrY	CAT	exon	20416165	20416331	.	-	.	source_transcript=ENST00000761002.1;source_transcript_name=BCORP1-218;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761002.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761002.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001522;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001522;transcript_name=HG003_chrY_T0001522;gene_name=BCORP1;ID=exon:HG003_chrY_T0001522:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418816	.	-	.	source_transcript=ENST00000761002.1;source_transcript_name=BCORP1-218;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761002.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761002.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001522;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001522;transcript_name=HG003_chrY_T0001522;gene_name=BCORP1;ID=intron:HG003_chrY_T0001522:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761002.1;source_transcript_name=BCORP1-218;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761002.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761002.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001522;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001522;transcript_name=HG003_chrY_T0001522;gene_name=BCORP1;ID=exon:HG003_chrY_T0001522:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761002.1;source_transcript_name=BCORP1-218;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761002.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761002.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001522;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001522;transcript_name=HG003_chrY_T0001522;gene_name=BCORP1;ID=intron:HG003_chrY_T0001522:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20428041	.	-	.	source_transcript=ENST00000761002.1;source_transcript_name=BCORP1-218;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761002.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761002.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001522;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001522;transcript_name=HG003_chrY_T0001522;gene_name=BCORP1;ID=exon:HG003_chrY_T0001522:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416165	20428041	1000	-	.	source_transcript=ENST00000761001.1;source_transcript_name=BCORP1-217;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761001.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761001.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001523;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001523;gene_name=BCORP1;ID=HG003_chrY_T0001523;Name=BCORP1
HG003_chrY	CAT	exon	20416165	20416331	.	-	.	source_transcript=ENST00000761001.1;source_transcript_name=BCORP1-217;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761001.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761001.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001523;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001523;transcript_name=HG003_chrY_T0001523;gene_name=BCORP1;ID=exon:HG003_chrY_T0001523:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418800	.	-	.	source_transcript=ENST00000761001.1;source_transcript_name=BCORP1-217;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761001.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761001.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001523;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001523;transcript_name=HG003_chrY_T0001523;gene_name=BCORP1;ID=intron:HG003_chrY_T0001523:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761001.1;source_transcript_name=BCORP1-217;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761001.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761001.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001523;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001523;transcript_name=HG003_chrY_T0001523;gene_name=BCORP1;ID=exon:HG003_chrY_T0001523:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761001.1;source_transcript_name=BCORP1-217;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761001.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761001.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001523;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001523;transcript_name=HG003_chrY_T0001523;gene_name=BCORP1;ID=intron:HG003_chrY_T0001523:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20428041	.	-	.	source_transcript=ENST00000761001.1;source_transcript_name=BCORP1-217;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761001.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761001.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001523;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001523;transcript_name=HG003_chrY_T0001523;gene_name=BCORP1;ID=exon:HG003_chrY_T0001523:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20428025	1000	-	.	source_transcript=ENST00000761004.1;source_transcript_name=BCORP1-220;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761004.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761004.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001524;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001524;gene_name=BCORP1;ID=HG003_chrY_T0001524;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761004.1;source_transcript_name=BCORP1-220;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761004.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761004.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001524;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001524;transcript_name=HG003_chrY_T0001524;gene_name=BCORP1;ID=exon:HG003_chrY_T0001524:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418800	.	-	.	source_transcript=ENST00000761004.1;source_transcript_name=BCORP1-220;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761004.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761004.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001524;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001524;transcript_name=HG003_chrY_T0001524;gene_name=BCORP1;ID=intron:HG003_chrY_T0001524:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761004.1;source_transcript_name=BCORP1-220;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761004.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761004.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001524;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001524;transcript_name=HG003_chrY_T0001524;gene_name=BCORP1;ID=exon:HG003_chrY_T0001524:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761004.1;source_transcript_name=BCORP1-220;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761004.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761004.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001524;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001524;transcript_name=HG003_chrY_T0001524;gene_name=BCORP1;ID=intron:HG003_chrY_T0001524:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761004.1;source_transcript_name=BCORP1-220;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761004.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761004.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001524;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001524;transcript_name=HG003_chrY_T0001524;gene_name=BCORP1;ID=exon:HG003_chrY_T0001524:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000761004.1;source_transcript_name=BCORP1-220;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761004.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761004.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001524;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001524;transcript_name=HG003_chrY_T0001524;gene_name=BCORP1;ID=intron:HG003_chrY_T0001524:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20428025	.	-	.	source_transcript=ENST00000761004.1;source_transcript_name=BCORP1-220;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761004.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761004.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001524;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001524;transcript_name=HG003_chrY_T0001524;gene_name=BCORP1;ID=exon:HG003_chrY_T0001524:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427821	1000	-	.	source_transcript=ENST00000761019.1;source_transcript_name=BCORP1-235;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761019.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001525;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001525;gene_name=BCORP1;ID=HG003_chrY_T0001525;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761019.1;source_transcript_name=BCORP1-235;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761019.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001525;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001525;transcript_name=HG003_chrY_T0001525;gene_name=BCORP1;ID=exon:HG003_chrY_T0001525:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761019.1;source_transcript_name=BCORP1-235;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761019.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001525;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001525;transcript_name=HG003_chrY_T0001525;gene_name=BCORP1;ID=intron:HG003_chrY_T0001525:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761019.1;source_transcript_name=BCORP1-235;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761019.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001525;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001525;transcript_name=HG003_chrY_T0001525;gene_name=BCORP1;ID=exon:HG003_chrY_T0001525:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761019.1;source_transcript_name=BCORP1-235;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761019.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001525;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001525;transcript_name=HG003_chrY_T0001525;gene_name=BCORP1;ID=intron:HG003_chrY_T0001525:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761019.1;source_transcript_name=BCORP1-235;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761019.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001525;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001525;transcript_name=HG003_chrY_T0001525;gene_name=BCORP1;ID=exon:HG003_chrY_T0001525:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761019.1;source_transcript_name=BCORP1-235;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761019.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001525;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001525;transcript_name=HG003_chrY_T0001525;gene_name=BCORP1;ID=intron:HG003_chrY_T0001525:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761019.1;source_transcript_name=BCORP1-235;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761019.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001525;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001525;transcript_name=HG003_chrY_T0001525;gene_name=BCORP1;ID=exon:HG003_chrY_T0001525:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000761019.1;source_transcript_name=BCORP1-235;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761019.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001525;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001525;transcript_name=HG003_chrY_T0001525;gene_name=BCORP1;ID=intron:HG003_chrY_T0001525:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427821	.	-	.	source_transcript=ENST00000761019.1;source_transcript_name=BCORP1-235;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761019.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761019.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001525;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001525;transcript_name=HG003_chrY_T0001525;gene_name=BCORP1;ID=exon:HG003_chrY_T0001525:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427836	1000	-	.	source_transcript=ENST00000761013.1;source_transcript_name=BCORP1-229;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761013.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001526;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001526;gene_name=BCORP1;ID=HG003_chrY_T0001526;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761013.1;source_transcript_name=BCORP1-229;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761013.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001526;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001526;transcript_name=HG003_chrY_T0001526;gene_name=BCORP1;ID=exon:HG003_chrY_T0001526:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418816	.	-	.	source_transcript=ENST00000761013.1;source_transcript_name=BCORP1-229;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761013.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001526;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001526;transcript_name=HG003_chrY_T0001526;gene_name=BCORP1;ID=intron:HG003_chrY_T0001526:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761013.1;source_transcript_name=BCORP1-229;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761013.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001526;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001526;transcript_name=HG003_chrY_T0001526;gene_name=BCORP1;ID=exon:HG003_chrY_T0001526:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427753	.	-	.	source_transcript=ENST00000761013.1;source_transcript_name=BCORP1-229;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761013.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001526;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001526;transcript_name=HG003_chrY_T0001526;gene_name=BCORP1;ID=intron:HG003_chrY_T0001526:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427754	20427836	.	-	.	source_transcript=ENST00000761013.1;source_transcript_name=BCORP1-229;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761013.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761013.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001526;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001526;transcript_name=HG003_chrY_T0001526;gene_name=BCORP1;ID=exon:HG003_chrY_T0001526:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427875	1000	-	.	source_transcript=ENST00000761011.1;source_transcript_name=BCORP1-227;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761011.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761011.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001527;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001527;gene_name=BCORP1;ID=HG003_chrY_T0001527;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761011.1;source_transcript_name=BCORP1-227;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761011.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761011.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001527;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001527;transcript_name=HG003_chrY_T0001527;gene_name=BCORP1;ID=exon:HG003_chrY_T0001527:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761011.1;source_transcript_name=BCORP1-227;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761011.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761011.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001527;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001527;transcript_name=HG003_chrY_T0001527;gene_name=BCORP1;ID=intron:HG003_chrY_T0001527:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761011.1;source_transcript_name=BCORP1-227;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761011.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761011.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001527;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001527;transcript_name=HG003_chrY_T0001527;gene_name=BCORP1;ID=exon:HG003_chrY_T0001527:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20418816	.	-	.	source_transcript=ENST00000761011.1;source_transcript_name=BCORP1-227;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761011.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761011.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001527;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001527;transcript_name=HG003_chrY_T0001527;gene_name=BCORP1;ID=intron:HG003_chrY_T0001527:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761011.1;source_transcript_name=BCORP1-227;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761011.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761011.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001527;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001527;transcript_name=HG003_chrY_T0001527;gene_name=BCORP1;ID=exon:HG003_chrY_T0001527:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761011.1;source_transcript_name=BCORP1-227;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761011.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761011.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001527;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001527;transcript_name=HG003_chrY_T0001527;gene_name=BCORP1;ID=intron:HG003_chrY_T0001527:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427875	.	-	.	source_transcript=ENST00000761011.1;source_transcript_name=BCORP1-227;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761011.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761011.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001527;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001527;transcript_name=HG003_chrY_T0001527;gene_name=BCORP1;ID=exon:HG003_chrY_T0001527:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427784	1000	-	.	source_transcript=ENST00000761043.1;source_transcript_name=BCORP1-259;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761043.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001528;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001528;gene_name=BCORP1;ID=HG003_chrY_T0001528;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761043.1;source_transcript_name=BCORP1-259;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001528;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001528;transcript_name=HG003_chrY_T0001528;gene_name=BCORP1;ID=exon:HG003_chrY_T0001528:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416787	.	-	.	source_transcript=ENST00000761043.1;source_transcript_name=BCORP1-259;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001528;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001528;transcript_name=HG003_chrY_T0001528;gene_name=BCORP1;ID=intron:HG003_chrY_T0001528:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416788	20416886	.	-	.	source_transcript=ENST00000761043.1;source_transcript_name=BCORP1-259;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001528;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001528;transcript_name=HG003_chrY_T0001528;gene_name=BCORP1;ID=exon:HG003_chrY_T0001528:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416887	20418006	.	-	.	source_transcript=ENST00000761043.1;source_transcript_name=BCORP1-259;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001528;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001528;transcript_name=HG003_chrY_T0001528;gene_name=BCORP1;ID=intron:HG003_chrY_T0001528:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761043.1;source_transcript_name=BCORP1-259;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001528;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001528;transcript_name=HG003_chrY_T0001528;gene_name=BCORP1;ID=exon:HG003_chrY_T0001528:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761043.1;source_transcript_name=BCORP1-259;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001528;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001528;transcript_name=HG003_chrY_T0001528;gene_name=BCORP1;ID=intron:HG003_chrY_T0001528:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761043.1;source_transcript_name=BCORP1-259;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001528;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001528;transcript_name=HG003_chrY_T0001528;gene_name=BCORP1;ID=exon:HG003_chrY_T0001528:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761043.1;source_transcript_name=BCORP1-259;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001528;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001528;transcript_name=HG003_chrY_T0001528;gene_name=BCORP1;ID=intron:HG003_chrY_T0001528:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427784	.	-	.	source_transcript=ENST00000761043.1;source_transcript_name=BCORP1-259;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001528;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001528;transcript_name=HG003_chrY_T0001528;gene_name=BCORP1;ID=exon:HG003_chrY_T0001528:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427786	1000	-	.	source_transcript=ENST00000761039.1;source_transcript_name=BCORP1-255;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761039.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001529;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001529;gene_name=BCORP1;ID=HG003_chrY_T0001529;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761039.1;source_transcript_name=BCORP1-255;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001529;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001529;transcript_name=HG003_chrY_T0001529;gene_name=BCORP1;ID=exon:HG003_chrY_T0001529:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761039.1;source_transcript_name=BCORP1-255;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001529;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001529;transcript_name=HG003_chrY_T0001529;gene_name=BCORP1;ID=intron:HG003_chrY_T0001529:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761039.1;source_transcript_name=BCORP1-255;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001529;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001529;transcript_name=HG003_chrY_T0001529;gene_name=BCORP1;ID=exon:HG003_chrY_T0001529:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20416832	.	-	.	source_transcript=ENST00000761039.1;source_transcript_name=BCORP1-255;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001529;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001529;transcript_name=HG003_chrY_T0001529;gene_name=BCORP1;ID=intron:HG003_chrY_T0001529:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416833	20416886	.	-	.	source_transcript=ENST00000761039.1;source_transcript_name=BCORP1-255;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001529;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001529;transcript_name=HG003_chrY_T0001529;gene_name=BCORP1;ID=exon:HG003_chrY_T0001529:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416887	20418816	.	-	.	source_transcript=ENST00000761039.1;source_transcript_name=BCORP1-255;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001529;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001529;transcript_name=HG003_chrY_T0001529;gene_name=BCORP1;ID=intron:HG003_chrY_T0001529:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761039.1;source_transcript_name=BCORP1-255;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001529;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001529;transcript_name=HG003_chrY_T0001529;gene_name=BCORP1;ID=exon:HG003_chrY_T0001529:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761039.1;source_transcript_name=BCORP1-255;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001529;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001529;transcript_name=HG003_chrY_T0001529;gene_name=BCORP1;ID=intron:HG003_chrY_T0001529:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761039.1;source_transcript_name=BCORP1-255;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001529;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001529;transcript_name=HG003_chrY_T0001529;gene_name=BCORP1;ID=exon:HG003_chrY_T0001529:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000761039.1;source_transcript_name=BCORP1-255;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001529;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001529;transcript_name=HG003_chrY_T0001529;gene_name=BCORP1;ID=intron:HG003_chrY_T0001529:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=ENST00000761039.1;source_transcript_name=BCORP1-255;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001529;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001529;transcript_name=HG003_chrY_T0001529;gene_name=BCORP1;ID=exon:HG003_chrY_T0001529:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427806	1000	-	.	source_transcript=ENST00000761029.1;source_transcript_name=BCORP1-245;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761029.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001530;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001530;gene_name=BCORP1;ID=HG003_chrY_T0001530;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761029.1;source_transcript_name=BCORP1-245;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001530;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001530;transcript_name=HG003_chrY_T0001530;gene_name=BCORP1;ID=exon:HG003_chrY_T0001530:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761029.1;source_transcript_name=BCORP1-245;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001530;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001530;transcript_name=HG003_chrY_T0001530;gene_name=BCORP1;ID=intron:HG003_chrY_T0001530:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416745	.	-	.	source_transcript=ENST00000761029.1;source_transcript_name=BCORP1-245;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001530;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001530;transcript_name=HG003_chrY_T0001530;gene_name=BCORP1;ID=exon:HG003_chrY_T0001530:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416746	20418800	.	-	.	source_transcript=ENST00000761029.1;source_transcript_name=BCORP1-245;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001530;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001530;transcript_name=HG003_chrY_T0001530;gene_name=BCORP1;ID=intron:HG003_chrY_T0001530:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761029.1;source_transcript_name=BCORP1-245;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001530;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001530;transcript_name=HG003_chrY_T0001530;gene_name=BCORP1;ID=exon:HG003_chrY_T0001530:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761029.1;source_transcript_name=BCORP1-245;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001530;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001530;transcript_name=HG003_chrY_T0001530;gene_name=BCORP1;ID=intron:HG003_chrY_T0001530:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427806	.	-	.	source_transcript=ENST00000761029.1;source_transcript_name=BCORP1-245;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001530;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001530;transcript_name=HG003_chrY_T0001530;gene_name=BCORP1;ID=exon:HG003_chrY_T0001530:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427784	1000	-	.	source_transcript=ENST00000761041.1;source_transcript_name=BCORP1-257;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761041.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761041.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001531;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001531;gene_name=BCORP1;ID=HG003_chrY_T0001531;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761041.1;source_transcript_name=BCORP1-257;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761041.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761041.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001531;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001531;transcript_name=HG003_chrY_T0001531;gene_name=BCORP1;ID=exon:HG003_chrY_T0001531:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761041.1;source_transcript_name=BCORP1-257;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761041.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761041.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001531;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001531;transcript_name=HG003_chrY_T0001531;gene_name=BCORP1;ID=intron:HG003_chrY_T0001531:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761041.1;source_transcript_name=BCORP1-257;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761041.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761041.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001531;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001531;transcript_name=HG003_chrY_T0001531;gene_name=BCORP1;ID=exon:HG003_chrY_T0001531:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20418816	.	-	.	source_transcript=ENST00000761041.1;source_transcript_name=BCORP1-257;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761041.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761041.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001531;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001531;transcript_name=HG003_chrY_T0001531;gene_name=BCORP1;ID=intron:HG003_chrY_T0001531:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761041.1;source_transcript_name=BCORP1-257;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761041.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761041.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001531;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001531;transcript_name=HG003_chrY_T0001531;gene_name=BCORP1;ID=exon:HG003_chrY_T0001531:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20419390	.	-	.	source_transcript=ENST00000761041.1;source_transcript_name=BCORP1-257;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761041.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761041.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001531;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001531;transcript_name=HG003_chrY_T0001531;gene_name=BCORP1;ID=intron:HG003_chrY_T0001531:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20419391	20419446	.	-	.	source_transcript=ENST00000761041.1;source_transcript_name=BCORP1-257;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761041.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761041.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001531;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001531;transcript_name=HG003_chrY_T0001531;gene_name=BCORP1;ID=exon:HG003_chrY_T0001531:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20419447	20427758	.	-	.	source_transcript=ENST00000761041.1;source_transcript_name=BCORP1-257;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761041.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761041.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001531;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001531;transcript_name=HG003_chrY_T0001531;gene_name=BCORP1;ID=intron:HG003_chrY_T0001531:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427784	.	-	.	source_transcript=ENST00000761041.1;source_transcript_name=BCORP1-257;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761041.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761041.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001531;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001531;transcript_name=HG003_chrY_T0001531;gene_name=BCORP1;ID=exon:HG003_chrY_T0001531:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427816	1000	-	.	source_transcript=ENST00000761021.1;source_transcript_name=BCORP1-237;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761021.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001532;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001532;gene_name=BCORP1;ID=HG003_chrY_T0001532;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761021.1;source_transcript_name=BCORP1-237;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761021.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001532;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001532;transcript_name=HG003_chrY_T0001532;gene_name=BCORP1;ID=exon:HG003_chrY_T0001532:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761021.1;source_transcript_name=BCORP1-237;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761021.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001532;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001532;transcript_name=HG003_chrY_T0001532;gene_name=BCORP1;ID=intron:HG003_chrY_T0001532:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761021.1;source_transcript_name=BCORP1-237;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761021.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001532;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001532;transcript_name=HG003_chrY_T0001532;gene_name=BCORP1;ID=exon:HG003_chrY_T0001532:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20416832	.	-	.	source_transcript=ENST00000761021.1;source_transcript_name=BCORP1-237;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761021.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001532;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001532;transcript_name=HG003_chrY_T0001532;gene_name=BCORP1;ID=intron:HG003_chrY_T0001532:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416833	20416961	.	-	.	source_transcript=ENST00000761021.1;source_transcript_name=BCORP1-237;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761021.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001532;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001532;transcript_name=HG003_chrY_T0001532;gene_name=BCORP1;ID=exon:HG003_chrY_T0001532:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416962	20418006	.	-	.	source_transcript=ENST00000761021.1;source_transcript_name=BCORP1-237;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761021.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001532;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001532;transcript_name=HG003_chrY_T0001532;gene_name=BCORP1;ID=intron:HG003_chrY_T0001532:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761021.1;source_transcript_name=BCORP1-237;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761021.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001532;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001532;transcript_name=HG003_chrY_T0001532;gene_name=BCORP1;ID=exon:HG003_chrY_T0001532:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761021.1;source_transcript_name=BCORP1-237;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761021.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001532;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001532;transcript_name=HG003_chrY_T0001532;gene_name=BCORP1;ID=intron:HG003_chrY_T0001532:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761021.1;source_transcript_name=BCORP1-237;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761021.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001532;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001532;transcript_name=HG003_chrY_T0001532;gene_name=BCORP1;ID=exon:HG003_chrY_T0001532:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761021.1;source_transcript_name=BCORP1-237;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761021.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001532;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001532;transcript_name=HG003_chrY_T0001532;gene_name=BCORP1;ID=intron:HG003_chrY_T0001532:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427816	.	-	.	source_transcript=ENST00000761021.1;source_transcript_name=BCORP1-237;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761021.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761021.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001532;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001532;transcript_name=HG003_chrY_T0001532;gene_name=BCORP1;ID=exon:HG003_chrY_T0001532:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427786	1000	-	.	source_transcript=ENST00000761036.1;source_transcript_name=BCORP1-252;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761036.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001533;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001533;gene_name=BCORP1;ID=HG003_chrY_T0001533;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761036.1;source_transcript_name=BCORP1-252;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001533;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001533;transcript_name=HG003_chrY_T0001533;gene_name=BCORP1;ID=exon:HG003_chrY_T0001533:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761036.1;source_transcript_name=BCORP1-252;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001533;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001533;transcript_name=HG003_chrY_T0001533;gene_name=BCORP1;ID=intron:HG003_chrY_T0001533:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761036.1;source_transcript_name=BCORP1-252;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001533;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001533;transcript_name=HG003_chrY_T0001533;gene_name=BCORP1;ID=exon:HG003_chrY_T0001533:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000761036.1;source_transcript_name=BCORP1-252;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001533;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001533;transcript_name=HG003_chrY_T0001533;gene_name=BCORP1;ID=intron:HG003_chrY_T0001533:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761036.1;source_transcript_name=BCORP1-252;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001533;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001533;transcript_name=HG003_chrY_T0001533;gene_name=BCORP1;ID=exon:HG003_chrY_T0001533:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761036.1;source_transcript_name=BCORP1-252;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001533;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001533;transcript_name=HG003_chrY_T0001533;gene_name=BCORP1;ID=intron:HG003_chrY_T0001533:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420201	.	-	.	source_transcript=ENST00000761036.1;source_transcript_name=BCORP1-252;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001533;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001533;transcript_name=HG003_chrY_T0001533;gene_name=BCORP1;ID=exon:HG003_chrY_T0001533:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420202	20427758	.	-	.	source_transcript=ENST00000761036.1;source_transcript_name=BCORP1-252;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001533;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001533;transcript_name=HG003_chrY_T0001533;gene_name=BCORP1;ID=intron:HG003_chrY_T0001533:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=ENST00000761036.1;source_transcript_name=BCORP1-252;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001533;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001533;transcript_name=HG003_chrY_T0001533;gene_name=BCORP1;ID=exon:HG003_chrY_T0001533:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427788	1000	-	.	source_transcript=ENST00000761034.1;source_transcript_name=BCORP1-250;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761034.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001534;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001534;gene_name=BCORP1;ID=HG003_chrY_T0001534;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761034.1;source_transcript_name=BCORP1-250;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001534;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001534;transcript_name=HG003_chrY_T0001534;gene_name=BCORP1;ID=exon:HG003_chrY_T0001534:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761034.1;source_transcript_name=BCORP1-250;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001534;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001534;transcript_name=HG003_chrY_T0001534;gene_name=BCORP1;ID=intron:HG003_chrY_T0001534:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761034.1;source_transcript_name=BCORP1-250;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001534;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001534;transcript_name=HG003_chrY_T0001534;gene_name=BCORP1;ID=exon:HG003_chrY_T0001534:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20418006	.	-	.	source_transcript=ENST00000761034.1;source_transcript_name=BCORP1-250;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001534;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001534;transcript_name=HG003_chrY_T0001534;gene_name=BCORP1;ID=intron:HG003_chrY_T0001534:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761034.1;source_transcript_name=BCORP1-250;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001534;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001534;transcript_name=HG003_chrY_T0001534;gene_name=BCORP1;ID=exon:HG003_chrY_T0001534:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000761034.1;source_transcript_name=BCORP1-250;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001534;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001534;transcript_name=HG003_chrY_T0001534;gene_name=BCORP1;ID=intron:HG003_chrY_T0001534:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761034.1;source_transcript_name=BCORP1-250;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001534;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001534;transcript_name=HG003_chrY_T0001534;gene_name=BCORP1;ID=exon:HG003_chrY_T0001534:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761034.1;source_transcript_name=BCORP1-250;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001534;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001534;transcript_name=HG003_chrY_T0001534;gene_name=BCORP1;ID=intron:HG003_chrY_T0001534:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761034.1;source_transcript_name=BCORP1-250;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001534;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001534;transcript_name=HG003_chrY_T0001534;gene_name=BCORP1;ID=exon:HG003_chrY_T0001534:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000761034.1;source_transcript_name=BCORP1-250;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001534;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001534;transcript_name=HG003_chrY_T0001534;gene_name=BCORP1;ID=intron:HG003_chrY_T0001534:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427788	.	-	.	source_transcript=ENST00000761034.1;source_transcript_name=BCORP1-250;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001534;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001534;transcript_name=HG003_chrY_T0001534;gene_name=BCORP1;ID=exon:HG003_chrY_T0001534:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20428047	1000	-	.	source_transcript=ENST00000761000.1;source_transcript_name=BCORP1-216;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761000.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001535;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001535;gene_name=BCORP1;ID=HG003_chrY_T0001535;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761000.1;source_transcript_name=BCORP1-216;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761000.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001535;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001535;transcript_name=HG003_chrY_T0001535;gene_name=BCORP1;ID=exon:HG003_chrY_T0001535:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418816	.	-	.	source_transcript=ENST00000761000.1;source_transcript_name=BCORP1-216;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761000.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001535;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001535;transcript_name=HG003_chrY_T0001535;gene_name=BCORP1;ID=intron:HG003_chrY_T0001535:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761000.1;source_transcript_name=BCORP1-216;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761000.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001535;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001535;transcript_name=HG003_chrY_T0001535;gene_name=BCORP1;ID=exon:HG003_chrY_T0001535:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761000.1;source_transcript_name=BCORP1-216;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761000.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001535;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001535;transcript_name=HG003_chrY_T0001535;gene_name=BCORP1;ID=intron:HG003_chrY_T0001535:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761000.1;source_transcript_name=BCORP1-216;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761000.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001535;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001535;transcript_name=HG003_chrY_T0001535;gene_name=BCORP1;ID=exon:HG003_chrY_T0001535:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000761000.1;source_transcript_name=BCORP1-216;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761000.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001535;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001535;transcript_name=HG003_chrY_T0001535;gene_name=BCORP1;ID=intron:HG003_chrY_T0001535:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20428047	.	-	.	source_transcript=ENST00000761000.1;source_transcript_name=BCORP1-216;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761000.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001535;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001535;transcript_name=HG003_chrY_T0001535;gene_name=BCORP1;ID=exon:HG003_chrY_T0001535:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427807	1000	-	.	source_transcript=ENST00000761028.1;source_transcript_name=BCORP1-244;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761028.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001536;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001536;gene_name=BCORP1;ID=HG003_chrY_T0001536;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761028.1;source_transcript_name=BCORP1-244;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001536;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001536;transcript_name=HG003_chrY_T0001536;gene_name=BCORP1;ID=exon:HG003_chrY_T0001536:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416787	.	-	.	source_transcript=ENST00000761028.1;source_transcript_name=BCORP1-244;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001536;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001536;transcript_name=HG003_chrY_T0001536;gene_name=BCORP1;ID=intron:HG003_chrY_T0001536:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416788	20416966	.	-	.	source_transcript=ENST00000761028.1;source_transcript_name=BCORP1-244;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001536;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001536;transcript_name=HG003_chrY_T0001536;gene_name=BCORP1;ID=exon:HG003_chrY_T0001536:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416967	20418800	.	-	.	source_transcript=ENST00000761028.1;source_transcript_name=BCORP1-244;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001536;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001536;transcript_name=HG003_chrY_T0001536;gene_name=BCORP1;ID=intron:HG003_chrY_T0001536:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761028.1;source_transcript_name=BCORP1-244;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001536;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001536;transcript_name=HG003_chrY_T0001536;gene_name=BCORP1;ID=exon:HG003_chrY_T0001536:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761028.1;source_transcript_name=BCORP1-244;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001536;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001536;transcript_name=HG003_chrY_T0001536;gene_name=BCORP1;ID=intron:HG003_chrY_T0001536:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427807	.	-	.	source_transcript=ENST00000761028.1;source_transcript_name=BCORP1-244;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001536;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001536;transcript_name=HG003_chrY_T0001536;gene_name=BCORP1;ID=exon:HG003_chrY_T0001536:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427816	1000	-	.	source_transcript=ENST00000761023.1;source_transcript_name=BCORP1-239;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761023.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761023.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001537;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001537;gene_name=BCORP1;ID=HG003_chrY_T0001537;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761023.1;source_transcript_name=BCORP1-239;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761023.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761023.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001537;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001537;transcript_name=HG003_chrY_T0001537;gene_name=BCORP1;ID=exon:HG003_chrY_T0001537:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761023.1;source_transcript_name=BCORP1-239;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761023.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761023.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001537;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001537;transcript_name=HG003_chrY_T0001537;gene_name=BCORP1;ID=intron:HG003_chrY_T0001537:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761023.1;source_transcript_name=BCORP1-239;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761023.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761023.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001537;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001537;transcript_name=HG003_chrY_T0001537;gene_name=BCORP1;ID=exon:HG003_chrY_T0001537:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20416832	.	-	.	source_transcript=ENST00000761023.1;source_transcript_name=BCORP1-239;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761023.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761023.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001537;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001537;transcript_name=HG003_chrY_T0001537;gene_name=BCORP1;ID=intron:HG003_chrY_T0001537:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416833	20416966	.	-	.	source_transcript=ENST00000761023.1;source_transcript_name=BCORP1-239;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761023.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761023.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001537;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001537;transcript_name=HG003_chrY_T0001537;gene_name=BCORP1;ID=exon:HG003_chrY_T0001537:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416967	20418006	.	-	.	source_transcript=ENST00000761023.1;source_transcript_name=BCORP1-239;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761023.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761023.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001537;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001537;transcript_name=HG003_chrY_T0001537;gene_name=BCORP1;ID=intron:HG003_chrY_T0001537:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761023.1;source_transcript_name=BCORP1-239;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761023.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761023.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001537;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001537;transcript_name=HG003_chrY_T0001537;gene_name=BCORP1;ID=exon:HG003_chrY_T0001537:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761023.1;source_transcript_name=BCORP1-239;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761023.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761023.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001537;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001537;transcript_name=HG003_chrY_T0001537;gene_name=BCORP1;ID=intron:HG003_chrY_T0001537:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761023.1;source_transcript_name=BCORP1-239;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761023.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761023.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001537;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001537;transcript_name=HG003_chrY_T0001537;gene_name=BCORP1;ID=exon:HG003_chrY_T0001537:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761023.1;source_transcript_name=BCORP1-239;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761023.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761023.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001537;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001537;transcript_name=HG003_chrY_T0001537;gene_name=BCORP1;ID=intron:HG003_chrY_T0001537:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427816	.	-	.	source_transcript=ENST00000761023.1;source_transcript_name=BCORP1-239;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761023.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761023.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001537;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001537;transcript_name=HG003_chrY_T0001537;gene_name=BCORP1;ID=exon:HG003_chrY_T0001537:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427821	1000	-	.	source_transcript=ENST00000761017.1;source_transcript_name=BCORP1-233;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761017.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001538;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001538;gene_name=BCORP1;ID=HG003_chrY_T0001538;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761017.1;source_transcript_name=BCORP1-233;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761017.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001538;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001538;transcript_name=HG003_chrY_T0001538;gene_name=BCORP1;ID=exon:HG003_chrY_T0001538:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418816	.	-	.	source_transcript=ENST00000761017.1;source_transcript_name=BCORP1-233;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761017.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001538;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001538;transcript_name=HG003_chrY_T0001538;gene_name=BCORP1;ID=intron:HG003_chrY_T0001538:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761017.1;source_transcript_name=BCORP1-233;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761017.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001538;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001538;transcript_name=HG003_chrY_T0001538;gene_name=BCORP1;ID=exon:HG003_chrY_T0001538:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761017.1;source_transcript_name=BCORP1-233;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761017.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001538;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001538;transcript_name=HG003_chrY_T0001538;gene_name=BCORP1;ID=intron:HG003_chrY_T0001538:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420201	.	-	.	source_transcript=ENST00000761017.1;source_transcript_name=BCORP1-233;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761017.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001538;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001538;transcript_name=HG003_chrY_T0001538;gene_name=BCORP1;ID=exon:HG003_chrY_T0001538:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420202	20427758	.	-	.	source_transcript=ENST00000761017.1;source_transcript_name=BCORP1-233;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761017.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001538;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001538;transcript_name=HG003_chrY_T0001538;gene_name=BCORP1;ID=intron:HG003_chrY_T0001538:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427821	.	-	.	source_transcript=ENST00000761017.1;source_transcript_name=BCORP1-233;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761017.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761017.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001538;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001538;transcript_name=HG003_chrY_T0001538;gene_name=BCORP1;ID=exon:HG003_chrY_T0001538:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20428057	1000	-	.	source_transcript=ENST00000760999.1;source_transcript_name=BCORP1-215;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760999.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760999.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001539;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001539;gene_name=BCORP1;ID=HG003_chrY_T0001539;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000760999.1;source_transcript_name=BCORP1-215;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760999.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760999.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001539;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001539;transcript_name=HG003_chrY_T0001539;gene_name=BCORP1;ID=exon:HG003_chrY_T0001539:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418800	.	-	.	source_transcript=ENST00000760999.1;source_transcript_name=BCORP1-215;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760999.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760999.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001539;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001539;transcript_name=HG003_chrY_T0001539;gene_name=BCORP1;ID=intron:HG003_chrY_T0001539:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000760999.1;source_transcript_name=BCORP1-215;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760999.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760999.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001539;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001539;transcript_name=HG003_chrY_T0001539;gene_name=BCORP1;ID=exon:HG003_chrY_T0001539:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20419390	.	-	.	source_transcript=ENST00000760999.1;source_transcript_name=BCORP1-215;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760999.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760999.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001539;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001539;transcript_name=HG003_chrY_T0001539;gene_name=BCORP1;ID=intron:HG003_chrY_T0001539:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20419391	20419471	.	-	.	source_transcript=ENST00000760999.1;source_transcript_name=BCORP1-215;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760999.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760999.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001539;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001539;transcript_name=HG003_chrY_T0001539;gene_name=BCORP1;ID=exon:HG003_chrY_T0001539:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20419472	20427758	.	-	.	source_transcript=ENST00000760999.1;source_transcript_name=BCORP1-215;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760999.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760999.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001539;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001539;transcript_name=HG003_chrY_T0001539;gene_name=BCORP1;ID=intron:HG003_chrY_T0001539:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20428057	.	-	.	source_transcript=ENST00000760999.1;source_transcript_name=BCORP1-215;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000760999.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000760999.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001539;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001539;transcript_name=HG003_chrY_T0001539;gene_name=BCORP1;ID=exon:HG003_chrY_T0001539:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427801	1000	-	.	source_transcript=ENST00000761031.1;source_transcript_name=BCORP1-247;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761031.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001540;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001540;gene_name=BCORP1;ID=HG003_chrY_T0001540;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761031.1;source_transcript_name=BCORP1-247;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001540;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001540;transcript_name=HG003_chrY_T0001540;gene_name=BCORP1;ID=exon:HG003_chrY_T0001540:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761031.1;source_transcript_name=BCORP1-247;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001540;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001540;transcript_name=HG003_chrY_T0001540;gene_name=BCORP1;ID=intron:HG003_chrY_T0001540:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761031.1;source_transcript_name=BCORP1-247;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001540;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001540;transcript_name=HG003_chrY_T0001540;gene_name=BCORP1;ID=exon:HG003_chrY_T0001540:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418651	.	-	.	source_transcript=ENST00000761031.1;source_transcript_name=BCORP1-247;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001540;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001540;transcript_name=HG003_chrY_T0001540;gene_name=BCORP1;ID=intron:HG003_chrY_T0001540:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418652	20418753	.	-	.	source_transcript=ENST00000761031.1;source_transcript_name=BCORP1-247;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001540;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001540;transcript_name=HG003_chrY_T0001540;gene_name=BCORP1;ID=exon:HG003_chrY_T0001540:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418754	20427758	.	-	.	source_transcript=ENST00000761031.1;source_transcript_name=BCORP1-247;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001540;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001540;transcript_name=HG003_chrY_T0001540;gene_name=BCORP1;ID=intron:HG003_chrY_T0001540:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427801	.	-	.	source_transcript=ENST00000761031.1;source_transcript_name=BCORP1-247;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001540;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001540;transcript_name=HG003_chrY_T0001540;gene_name=BCORP1;ID=exon:HG003_chrY_T0001540:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427825	1000	-	.	source_transcript=ENST00000761014.1;source_transcript_name=BCORP1-230;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761014.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001541;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001541;gene_name=BCORP1;ID=HG003_chrY_T0001541;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20417589	.	-	.	source_transcript=ENST00000761014.1;source_transcript_name=BCORP1-230;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001541;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001541;transcript_name=HG003_chrY_T0001541;gene_name=BCORP1;ID=exon:HG003_chrY_T0001541:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20417590	20418006	.	-	.	source_transcript=ENST00000761014.1;source_transcript_name=BCORP1-230;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001541;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001541;transcript_name=HG003_chrY_T0001541;gene_name=BCORP1;ID=intron:HG003_chrY_T0001541:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761014.1;source_transcript_name=BCORP1-230;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001541;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001541;transcript_name=HG003_chrY_T0001541;gene_name=BCORP1;ID=exon:HG003_chrY_T0001541:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761014.1;source_transcript_name=BCORP1-230;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001541;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001541;transcript_name=HG003_chrY_T0001541;gene_name=BCORP1;ID=intron:HG003_chrY_T0001541:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761014.1;source_transcript_name=BCORP1-230;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001541;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001541;transcript_name=HG003_chrY_T0001541;gene_name=BCORP1;ID=exon:HG003_chrY_T0001541:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761014.1;source_transcript_name=BCORP1-230;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001541;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001541;transcript_name=HG003_chrY_T0001541;gene_name=BCORP1;ID=intron:HG003_chrY_T0001541:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427825	.	-	.	source_transcript=ENST00000761014.1;source_transcript_name=BCORP1-230;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001541;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001541;transcript_name=HG003_chrY_T0001541;gene_name=BCORP1;ID=exon:HG003_chrY_T0001541:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427816	1000	-	.	source_transcript=ENST00000761022.1;source_transcript_name=BCORP1-238;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761022.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001542;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001542;gene_name=BCORP1;ID=HG003_chrY_T0001542;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416966	.	-	.	source_transcript=ENST00000761022.1;source_transcript_name=BCORP1-238;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761022.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001542;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001542;transcript_name=HG003_chrY_T0001542;gene_name=BCORP1;ID=exon:HG003_chrY_T0001542:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416967	20418006	.	-	.	source_transcript=ENST00000761022.1;source_transcript_name=BCORP1-238;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761022.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001542;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001542;transcript_name=HG003_chrY_T0001542;gene_name=BCORP1;ID=intron:HG003_chrY_T0001542:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761022.1;source_transcript_name=BCORP1-238;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761022.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001542;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001542;transcript_name=HG003_chrY_T0001542;gene_name=BCORP1;ID=exon:HG003_chrY_T0001542:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000761022.1;source_transcript_name=BCORP1-238;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761022.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001542;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001542;transcript_name=HG003_chrY_T0001542;gene_name=BCORP1;ID=intron:HG003_chrY_T0001542:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761022.1;source_transcript_name=BCORP1-238;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761022.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001542;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001542;transcript_name=HG003_chrY_T0001542;gene_name=BCORP1;ID=exon:HG003_chrY_T0001542:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761022.1;source_transcript_name=BCORP1-238;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761022.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001542;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001542;transcript_name=HG003_chrY_T0001542;gene_name=BCORP1;ID=intron:HG003_chrY_T0001542:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427816	.	-	.	source_transcript=ENST00000761022.1;source_transcript_name=BCORP1-238;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761022.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761022.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001542;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001542;transcript_name=HG003_chrY_T0001542;gene_name=BCORP1;ID=exon:HG003_chrY_T0001542:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427791	1000	-	.	source_transcript=ENST00000761033.1;source_transcript_name=BCORP1-249;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761033.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761033.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001543;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001543;gene_name=BCORP1;ID=HG003_chrY_T0001543;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761033.1;source_transcript_name=BCORP1-249;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761033.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761033.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001543;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001543;transcript_name=HG003_chrY_T0001543;gene_name=BCORP1;ID=exon:HG003_chrY_T0001543:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761033.1;source_transcript_name=BCORP1-249;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761033.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761033.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001543;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001543;transcript_name=HG003_chrY_T0001543;gene_name=BCORP1;ID=intron:HG003_chrY_T0001543:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761033.1;source_transcript_name=BCORP1-249;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761033.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761033.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001543;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001543;transcript_name=HG003_chrY_T0001543;gene_name=BCORP1;ID=exon:HG003_chrY_T0001543:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000761033.1;source_transcript_name=BCORP1-249;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761033.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761033.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001543;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001543;transcript_name=HG003_chrY_T0001543;gene_name=BCORP1;ID=intron:HG003_chrY_T0001543:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761033.1;source_transcript_name=BCORP1-249;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761033.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761033.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001543;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001543;transcript_name=HG003_chrY_T0001543;gene_name=BCORP1;ID=exon:HG003_chrY_T0001543:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20419390	.	-	.	source_transcript=ENST00000761033.1;source_transcript_name=BCORP1-249;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761033.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761033.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001543;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001543;transcript_name=HG003_chrY_T0001543;gene_name=BCORP1;ID=intron:HG003_chrY_T0001543:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20419391	20419446	.	-	.	source_transcript=ENST00000761033.1;source_transcript_name=BCORP1-249;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761033.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761033.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001543;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001543;transcript_name=HG003_chrY_T0001543;gene_name=BCORP1;ID=exon:HG003_chrY_T0001543:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20419447	20420116	.	-	.	source_transcript=ENST00000761033.1;source_transcript_name=BCORP1-249;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761033.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761033.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001543;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001543;transcript_name=HG003_chrY_T0001543;gene_name=BCORP1;ID=intron:HG003_chrY_T0001543:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761033.1;source_transcript_name=BCORP1-249;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761033.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761033.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001543;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001543;transcript_name=HG003_chrY_T0001543;gene_name=BCORP1;ID=exon:HG003_chrY_T0001543:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000761033.1;source_transcript_name=BCORP1-249;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761033.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761033.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001543;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001543;transcript_name=HG003_chrY_T0001543;gene_name=BCORP1;ID=intron:HG003_chrY_T0001543:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427791	.	-	.	source_transcript=ENST00000761033.1;source_transcript_name=BCORP1-249;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761033.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761033.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001543;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001543;transcript_name=HG003_chrY_T0001543;gene_name=BCORP1;ID=exon:HG003_chrY_T0001543:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20428019	1000	-	.	source_transcript=ENST00000761006.1;source_transcript_name=BCORP1-222;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761006.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761006.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001544;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001544;gene_name=BCORP1;ID=HG003_chrY_T0001544;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761006.1;source_transcript_name=BCORP1-222;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761006.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761006.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001544;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001544;transcript_name=HG003_chrY_T0001544;gene_name=BCORP1;ID=exon:HG003_chrY_T0001544:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761006.1;source_transcript_name=BCORP1-222;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761006.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761006.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001544;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001544;transcript_name=HG003_chrY_T0001544;gene_name=BCORP1;ID=intron:HG003_chrY_T0001544:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761006.1;source_transcript_name=BCORP1-222;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761006.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761006.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001544;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001544;transcript_name=HG003_chrY_T0001544;gene_name=BCORP1;ID=exon:HG003_chrY_T0001544:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000761006.1;source_transcript_name=BCORP1-222;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761006.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761006.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001544;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001544;transcript_name=HG003_chrY_T0001544;gene_name=BCORP1;ID=intron:HG003_chrY_T0001544:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761006.1;source_transcript_name=BCORP1-222;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761006.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761006.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001544;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001544;transcript_name=HG003_chrY_T0001544;gene_name=BCORP1;ID=exon:HG003_chrY_T0001544:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20419390	.	-	.	source_transcript=ENST00000761006.1;source_transcript_name=BCORP1-222;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761006.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761006.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001544;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001544;transcript_name=HG003_chrY_T0001544;gene_name=BCORP1;ID=intron:HG003_chrY_T0001544:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20419391	20419471	.	-	.	source_transcript=ENST00000761006.1;source_transcript_name=BCORP1-222;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761006.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761006.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001544;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001544;transcript_name=HG003_chrY_T0001544;gene_name=BCORP1;ID=exon:HG003_chrY_T0001544:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20419472	20427758	.	-	.	source_transcript=ENST00000761006.1;source_transcript_name=BCORP1-222;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761006.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761006.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001544;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001544;transcript_name=HG003_chrY_T0001544;gene_name=BCORP1;ID=intron:HG003_chrY_T0001544:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20428019	.	-	.	source_transcript=ENST00000761006.1;source_transcript_name=BCORP1-222;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761006.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761006.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001544;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001544;transcript_name=HG003_chrY_T0001544;gene_name=BCORP1;ID=exon:HG003_chrY_T0001544:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20428021	1000	-	.	source_transcript=ENST00000761005.1;source_transcript_name=BCORP1-221;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761005.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001545;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001545;gene_name=BCORP1;ID=HG003_chrY_T0001545;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761005.1;source_transcript_name=BCORP1-221;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761005.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001545;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001545;transcript_name=HG003_chrY_T0001545;gene_name=BCORP1;ID=exon:HG003_chrY_T0001545:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418816	.	-	.	source_transcript=ENST00000761005.1;source_transcript_name=BCORP1-221;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761005.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001545;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001545;transcript_name=HG003_chrY_T0001545;gene_name=BCORP1;ID=intron:HG003_chrY_T0001545:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761005.1;source_transcript_name=BCORP1-221;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761005.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001545;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001545;transcript_name=HG003_chrY_T0001545;gene_name=BCORP1;ID=exon:HG003_chrY_T0001545:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20419390	.	-	.	source_transcript=ENST00000761005.1;source_transcript_name=BCORP1-221;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761005.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001545;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001545;transcript_name=HG003_chrY_T0001545;gene_name=BCORP1;ID=intron:HG003_chrY_T0001545:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20419391	20419471	.	-	.	source_transcript=ENST00000761005.1;source_transcript_name=BCORP1-221;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761005.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001545;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001545;transcript_name=HG003_chrY_T0001545;gene_name=BCORP1;ID=exon:HG003_chrY_T0001545:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20419472	20427758	.	-	.	source_transcript=ENST00000761005.1;source_transcript_name=BCORP1-221;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761005.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001545;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001545;transcript_name=HG003_chrY_T0001545;gene_name=BCORP1;ID=intron:HG003_chrY_T0001545:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20428021	.	-	.	source_transcript=ENST00000761005.1;source_transcript_name=BCORP1-221;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761005.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761005.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001545;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001545;transcript_name=HG003_chrY_T0001545;gene_name=BCORP1;ID=exon:HG003_chrY_T0001545:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427812	1000	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=HG003_chrY_T0001546;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=exon:HG003_chrY_T0001546:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=intron:HG003_chrY_T0001546:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=exon:HG003_chrY_T0001546:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20416832	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=intron:HG003_chrY_T0001546:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416833	20416886	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=exon:HG003_chrY_T0001546:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416887	20418006	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=intron:HG003_chrY_T0001546:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=exon:HG003_chrY_T0001546:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=intron:HG003_chrY_T0001546:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=exon:HG003_chrY_T0001546:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20419390	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=intron:HG003_chrY_T0001546:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20419391	20419471	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=exon:HG003_chrY_T0001546:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20419472	20427758	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=intron:HG003_chrY_T0001546:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427812	.	-	.	source_transcript=ENST00000761026.1;source_transcript_name=BCORP1-242;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001546;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001546;transcript_name=HG003_chrY_T0001546;gene_name=BCORP1;ID=exon:HG003_chrY_T0001546:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427821	1000	-	.	source_transcript=ENST00000761015.1;source_transcript_name=BCORP1-231;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761015.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001547;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001547;gene_name=BCORP1;ID=HG003_chrY_T0001547;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416966	.	-	.	source_transcript=ENST00000761015.1;source_transcript_name=BCORP1-231;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001547;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001547;transcript_name=HG003_chrY_T0001547;gene_name=BCORP1;ID=exon:HG003_chrY_T0001547:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416967	20418006	.	-	.	source_transcript=ENST00000761015.1;source_transcript_name=BCORP1-231;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001547;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001547;transcript_name=HG003_chrY_T0001547;gene_name=BCORP1;ID=intron:HG003_chrY_T0001547:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761015.1;source_transcript_name=BCORP1-231;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001547;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001547;transcript_name=HG003_chrY_T0001547;gene_name=BCORP1;ID=exon:HG003_chrY_T0001547:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761015.1;source_transcript_name=BCORP1-231;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001547;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001547;transcript_name=HG003_chrY_T0001547;gene_name=BCORP1;ID=intron:HG003_chrY_T0001547:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761015.1;source_transcript_name=BCORP1-231;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001547;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001547;transcript_name=HG003_chrY_T0001547;gene_name=BCORP1;ID=exon:HG003_chrY_T0001547:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761015.1;source_transcript_name=BCORP1-231;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001547;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001547;transcript_name=HG003_chrY_T0001547;gene_name=BCORP1;ID=intron:HG003_chrY_T0001547:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427821	.	-	.	source_transcript=ENST00000761015.1;source_transcript_name=BCORP1-231;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001547;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001547;transcript_name=HG003_chrY_T0001547;gene_name=BCORP1;ID=exon:HG003_chrY_T0001547:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427784	1000	-	.	source_transcript=ENST00000761040.1;source_transcript_name=BCORP1-256;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761040.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761040.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001548;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001548;gene_name=BCORP1;ID=HG003_chrY_T0001548;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761040.1;source_transcript_name=BCORP1-256;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761040.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761040.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001548;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001548;transcript_name=HG003_chrY_T0001548;gene_name=BCORP1;ID=exon:HG003_chrY_T0001548:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761040.1;source_transcript_name=BCORP1-256;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761040.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761040.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001548;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001548;transcript_name=HG003_chrY_T0001548;gene_name=BCORP1;ID=intron:HG003_chrY_T0001548:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761040.1;source_transcript_name=BCORP1-256;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761040.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761040.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001548;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001548;transcript_name=HG003_chrY_T0001548;gene_name=BCORP1;ID=exon:HG003_chrY_T0001548:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761040.1;source_transcript_name=BCORP1-256;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761040.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761040.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001548;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001548;transcript_name=HG003_chrY_T0001548;gene_name=BCORP1;ID=intron:HG003_chrY_T0001548:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761040.1;source_transcript_name=BCORP1-256;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761040.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761040.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001548;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001548;transcript_name=HG003_chrY_T0001548;gene_name=BCORP1;ID=exon:HG003_chrY_T0001548:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761040.1;source_transcript_name=BCORP1-256;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761040.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761040.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001548;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001548;transcript_name=HG003_chrY_T0001548;gene_name=BCORP1;ID=intron:HG003_chrY_T0001548:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420201	.	-	.	source_transcript=ENST00000761040.1;source_transcript_name=BCORP1-256;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761040.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761040.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001548;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001548;transcript_name=HG003_chrY_T0001548;gene_name=BCORP1;ID=exon:HG003_chrY_T0001548:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420202	20427758	.	-	.	source_transcript=ENST00000761040.1;source_transcript_name=BCORP1-256;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761040.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761040.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001548;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001548;transcript_name=HG003_chrY_T0001548;gene_name=BCORP1;ID=intron:HG003_chrY_T0001548:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427784	.	-	.	source_transcript=ENST00000761040.1;source_transcript_name=BCORP1-256;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761040.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761040.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001548;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001548;transcript_name=HG003_chrY_T0001548;gene_name=BCORP1;ID=exon:HG003_chrY_T0001548:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427784	1000	-	.	source_transcript=ENST00000761042.1;source_transcript_name=BCORP1-258;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761042.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001549;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001549;gene_name=BCORP1;ID=HG003_chrY_T0001549;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761042.1;source_transcript_name=BCORP1-258;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001549;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001549;transcript_name=HG003_chrY_T0001549;gene_name=BCORP1;ID=exon:HG003_chrY_T0001549:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761042.1;source_transcript_name=BCORP1-258;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001549;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001549;transcript_name=HG003_chrY_T0001549;gene_name=BCORP1;ID=intron:HG003_chrY_T0001549:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761042.1;source_transcript_name=BCORP1-258;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001549;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001549;transcript_name=HG003_chrY_T0001549;gene_name=BCORP1;ID=exon:HG003_chrY_T0001549:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20418816	.	-	.	source_transcript=ENST00000761042.1;source_transcript_name=BCORP1-258;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001549;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001549;transcript_name=HG003_chrY_T0001549;gene_name=BCORP1;ID=intron:HG003_chrY_T0001549:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761042.1;source_transcript_name=BCORP1-258;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001549;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001549;transcript_name=HG003_chrY_T0001549;gene_name=BCORP1;ID=exon:HG003_chrY_T0001549:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427753	.	-	.	source_transcript=ENST00000761042.1;source_transcript_name=BCORP1-258;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001549;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001549;transcript_name=HG003_chrY_T0001549;gene_name=BCORP1;ID=intron:HG003_chrY_T0001549:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427754	20427784	.	-	.	source_transcript=ENST00000761042.1;source_transcript_name=BCORP1-258;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001549;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001549;transcript_name=HG003_chrY_T0001549;gene_name=BCORP1;ID=exon:HG003_chrY_T0001549:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427792	1000	-	.	source_transcript=ENST00000761032.1;source_transcript_name=BCORP1-248;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761032.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761032.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001550;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001550;gene_name=BCORP1;ID=HG003_chrY_T0001550;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761032.1;source_transcript_name=BCORP1-248;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761032.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761032.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001550;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001550;transcript_name=HG003_chrY_T0001550;gene_name=BCORP1;ID=exon:HG003_chrY_T0001550:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418816	.	-	.	source_transcript=ENST00000761032.1;source_transcript_name=BCORP1-248;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761032.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761032.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001550;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001550;transcript_name=HG003_chrY_T0001550;gene_name=BCORP1;ID=intron:HG003_chrY_T0001550:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761032.1;source_transcript_name=BCORP1-248;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761032.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761032.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001550;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001550;transcript_name=HG003_chrY_T0001550;gene_name=BCORP1;ID=exon:HG003_chrY_T0001550:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761032.1;source_transcript_name=BCORP1-248;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761032.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761032.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001550;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001550;transcript_name=HG003_chrY_T0001550;gene_name=BCORP1;ID=intron:HG003_chrY_T0001550:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761032.1;source_transcript_name=BCORP1-248;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761032.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761032.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001550;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001550;transcript_name=HG003_chrY_T0001550;gene_name=BCORP1;ID=exon:HG003_chrY_T0001550:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427753	.	-	.	source_transcript=ENST00000761032.1;source_transcript_name=BCORP1-248;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761032.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761032.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001550;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001550;transcript_name=HG003_chrY_T0001550;gene_name=BCORP1;ID=intron:HG003_chrY_T0001550:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427754	20427792	.	-	.	source_transcript=ENST00000761032.1;source_transcript_name=BCORP1-248;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761032.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761032.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001550;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001550;transcript_name=HG003_chrY_T0001550;gene_name=BCORP1;ID=exon:HG003_chrY_T0001550:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427786	1000	-	.	source_transcript=ENST00000761038.1;source_transcript_name=BCORP1-254;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761038.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761038.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001551;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001551;gene_name=BCORP1;ID=HG003_chrY_T0001551;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761038.1;source_transcript_name=BCORP1-254;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761038.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761038.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001551;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001551;transcript_name=HG003_chrY_T0001551;gene_name=BCORP1;ID=exon:HG003_chrY_T0001551:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761038.1;source_transcript_name=BCORP1-254;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761038.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761038.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001551;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001551;transcript_name=HG003_chrY_T0001551;gene_name=BCORP1;ID=intron:HG003_chrY_T0001551:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761038.1;source_transcript_name=BCORP1-254;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761038.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761038.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001551;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001551;transcript_name=HG003_chrY_T0001551;gene_name=BCORP1;ID=exon:HG003_chrY_T0001551:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20418816	.	-	.	source_transcript=ENST00000761038.1;source_transcript_name=BCORP1-254;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761038.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761038.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001551;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001551;transcript_name=HG003_chrY_T0001551;gene_name=BCORP1;ID=intron:HG003_chrY_T0001551:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761038.1;source_transcript_name=BCORP1-254;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761038.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761038.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001551;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001551;transcript_name=HG003_chrY_T0001551;gene_name=BCORP1;ID=exon:HG003_chrY_T0001551:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761038.1;source_transcript_name=BCORP1-254;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761038.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761038.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001551;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001551;transcript_name=HG003_chrY_T0001551;gene_name=BCORP1;ID=intron:HG003_chrY_T0001551:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761038.1;source_transcript_name=BCORP1-254;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761038.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761038.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001551;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001551;transcript_name=HG003_chrY_T0001551;gene_name=BCORP1;ID=exon:HG003_chrY_T0001551:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000761038.1;source_transcript_name=BCORP1-254;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761038.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761038.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001551;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001551;transcript_name=HG003_chrY_T0001551;gene_name=BCORP1;ID=intron:HG003_chrY_T0001551:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=ENST00000761038.1;source_transcript_name=BCORP1-254;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761038.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761038.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001551;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001551;transcript_name=HG003_chrY_T0001551;gene_name=BCORP1;ID=exon:HG003_chrY_T0001551:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427993	1000	-	.	source_transcript=ENST00000761010.1;source_transcript_name=BCORP1-226;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761010.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761010.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001552;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001552;gene_name=BCORP1;ID=HG003_chrY_T0001552;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761010.1;source_transcript_name=BCORP1-226;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761010.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761010.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001552;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001552;transcript_name=HG003_chrY_T0001552;gene_name=BCORP1;ID=exon:HG003_chrY_T0001552:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761010.1;source_transcript_name=BCORP1-226;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761010.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761010.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001552;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001552;transcript_name=HG003_chrY_T0001552;gene_name=BCORP1;ID=intron:HG003_chrY_T0001552:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761010.1;source_transcript_name=BCORP1-226;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761010.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761010.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001552;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001552;transcript_name=HG003_chrY_T0001552;gene_name=BCORP1;ID=exon:HG003_chrY_T0001552:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000761010.1;source_transcript_name=BCORP1-226;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761010.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761010.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001552;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001552;transcript_name=HG003_chrY_T0001552;gene_name=BCORP1;ID=intron:HG003_chrY_T0001552:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761010.1;source_transcript_name=BCORP1-226;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761010.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761010.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001552;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001552;transcript_name=HG003_chrY_T0001552;gene_name=BCORP1;ID=exon:HG003_chrY_T0001552:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761010.1;source_transcript_name=BCORP1-226;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761010.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761010.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001552;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001552;transcript_name=HG003_chrY_T0001552;gene_name=BCORP1;ID=intron:HG003_chrY_T0001552:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761010.1;source_transcript_name=BCORP1-226;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761010.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761010.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001552;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001552;transcript_name=HG003_chrY_T0001552;gene_name=BCORP1;ID=exon:HG003_chrY_T0001552:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000761010.1;source_transcript_name=BCORP1-226;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761010.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761010.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001552;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001552;transcript_name=HG003_chrY_T0001552;gene_name=BCORP1;ID=intron:HG003_chrY_T0001552:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427993	.	-	.	source_transcript=ENST00000761010.1;source_transcript_name=BCORP1-226;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761010.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761010.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001552;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001552;transcript_name=HG003_chrY_T0001552;gene_name=BCORP1;ID=exon:HG003_chrY_T0001552:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427812	1000	-	.	source_transcript=ENST00000761025.1;source_transcript_name=BCORP1-241;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761025.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761025.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001553;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001553;gene_name=BCORP1;ID=HG003_chrY_T0001553;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761025.1;source_transcript_name=BCORP1-241;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761025.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761025.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001553;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001553;transcript_name=HG003_chrY_T0001553;gene_name=BCORP1;ID=exon:HG003_chrY_T0001553:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761025.1;source_transcript_name=BCORP1-241;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761025.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761025.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001553;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001553;transcript_name=HG003_chrY_T0001553;gene_name=BCORP1;ID=intron:HG003_chrY_T0001553:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761025.1;source_transcript_name=BCORP1-241;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761025.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761025.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001553;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001553;transcript_name=HG003_chrY_T0001553;gene_name=BCORP1;ID=exon:HG003_chrY_T0001553:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20418800	.	-	.	source_transcript=ENST00000761025.1;source_transcript_name=BCORP1-241;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761025.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761025.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001553;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001553;transcript_name=HG003_chrY_T0001553;gene_name=BCORP1;ID=intron:HG003_chrY_T0001553:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761025.1;source_transcript_name=BCORP1-241;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761025.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761025.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001553;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001553;transcript_name=HG003_chrY_T0001553;gene_name=BCORP1;ID=exon:HG003_chrY_T0001553:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761025.1;source_transcript_name=BCORP1-241;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761025.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761025.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001553;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001553;transcript_name=HG003_chrY_T0001553;gene_name=BCORP1;ID=intron:HG003_chrY_T0001553:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427812	.	-	.	source_transcript=ENST00000761025.1;source_transcript_name=BCORP1-241;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761025.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761025.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001553;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001553;transcript_name=HG003_chrY_T0001553;gene_name=BCORP1;ID=exon:HG003_chrY_T0001553:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427786	1000	-	.	source_transcript=ENST00000761035.1;source_transcript_name=BCORP1-251;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761035.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001554;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001554;gene_name=BCORP1;ID=HG003_chrY_T0001554;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761035.1;source_transcript_name=BCORP1-251;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001554;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001554;transcript_name=HG003_chrY_T0001554;gene_name=BCORP1;ID=exon:HG003_chrY_T0001554:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761035.1;source_transcript_name=BCORP1-251;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001554;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001554;transcript_name=HG003_chrY_T0001554;gene_name=BCORP1;ID=intron:HG003_chrY_T0001554:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761035.1;source_transcript_name=BCORP1-251;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001554;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001554;transcript_name=HG003_chrY_T0001554;gene_name=BCORP1;ID=exon:HG003_chrY_T0001554:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761035.1;source_transcript_name=BCORP1-251;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001554;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001554;transcript_name=HG003_chrY_T0001554;gene_name=BCORP1;ID=intron:HG003_chrY_T0001554:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761035.1;source_transcript_name=BCORP1-251;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001554;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001554;transcript_name=HG003_chrY_T0001554;gene_name=BCORP1;ID=exon:HG003_chrY_T0001554:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20419390	.	-	.	source_transcript=ENST00000761035.1;source_transcript_name=BCORP1-251;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001554;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001554;transcript_name=HG003_chrY_T0001554;gene_name=BCORP1;ID=intron:HG003_chrY_T0001554:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20419391	20419465	.	-	.	source_transcript=ENST00000761035.1;source_transcript_name=BCORP1-251;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001554;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001554;transcript_name=HG003_chrY_T0001554;gene_name=BCORP1;ID=exon:HG003_chrY_T0001554:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20419466	20427758	.	-	.	source_transcript=ENST00000761035.1;source_transcript_name=BCORP1-251;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001554;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001554;transcript_name=HG003_chrY_T0001554;gene_name=BCORP1;ID=intron:HG003_chrY_T0001554:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=ENST00000761035.1;source_transcript_name=BCORP1-251;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001554;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001554;transcript_name=HG003_chrY_T0001554;gene_name=BCORP1;ID=exon:HG003_chrY_T0001554:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427812	1000	-	.	source_transcript=ENST00000761027.1;source_transcript_name=BCORP1-243;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761027.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001555;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001555;gene_name=BCORP1;ID=HG003_chrY_T0001555;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761027.1;source_transcript_name=BCORP1-243;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001555;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001555;transcript_name=HG003_chrY_T0001555;gene_name=BCORP1;ID=exon:HG003_chrY_T0001555:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761027.1;source_transcript_name=BCORP1-243;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001555;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001555;transcript_name=HG003_chrY_T0001555;gene_name=BCORP1;ID=intron:HG003_chrY_T0001555:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416745	.	-	.	source_transcript=ENST00000761027.1;source_transcript_name=BCORP1-243;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001555;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001555;transcript_name=HG003_chrY_T0001555;gene_name=BCORP1;ID=exon:HG003_chrY_T0001555:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416746	20418816	.	-	.	source_transcript=ENST00000761027.1;source_transcript_name=BCORP1-243;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001555;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001555;transcript_name=HG003_chrY_T0001555;gene_name=BCORP1;ID=intron:HG003_chrY_T0001555:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761027.1;source_transcript_name=BCORP1-243;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001555;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001555;transcript_name=HG003_chrY_T0001555;gene_name=BCORP1;ID=exon:HG003_chrY_T0001555:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761027.1;source_transcript_name=BCORP1-243;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001555;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001555;transcript_name=HG003_chrY_T0001555;gene_name=BCORP1;ID=intron:HG003_chrY_T0001555:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427812	.	-	.	source_transcript=ENST00000761027.1;source_transcript_name=BCORP1-243;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001555;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001555;transcript_name=HG003_chrY_T0001555;gene_name=BCORP1;ID=exon:HG003_chrY_T0001555:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427821	1000	-	.	source_transcript=ENST00000761016.1;source_transcript_name=BCORP1-232;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761016.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001556;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001556;gene_name=BCORP1;ID=HG003_chrY_T0001556;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761016.1;source_transcript_name=BCORP1-232;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001556;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001556;transcript_name=HG003_chrY_T0001556;gene_name=BCORP1;ID=exon:HG003_chrY_T0001556:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761016.1;source_transcript_name=BCORP1-232;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001556;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001556;transcript_name=HG003_chrY_T0001556;gene_name=BCORP1;ID=intron:HG003_chrY_T0001556:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761016.1;source_transcript_name=BCORP1-232;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001556;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001556;transcript_name=HG003_chrY_T0001556;gene_name=BCORP1;ID=exon:HG003_chrY_T0001556:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761016.1;source_transcript_name=BCORP1-232;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001556;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001556;transcript_name=HG003_chrY_T0001556;gene_name=BCORP1;ID=intron:HG003_chrY_T0001556:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761016.1;source_transcript_name=BCORP1-232;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001556;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001556;transcript_name=HG003_chrY_T0001556;gene_name=BCORP1;ID=exon:HG003_chrY_T0001556:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20419390	.	-	.	source_transcript=ENST00000761016.1;source_transcript_name=BCORP1-232;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001556;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001556;transcript_name=HG003_chrY_T0001556;gene_name=BCORP1;ID=intron:HG003_chrY_T0001556:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20419391	20419471	.	-	.	source_transcript=ENST00000761016.1;source_transcript_name=BCORP1-232;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001556;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001556;transcript_name=HG003_chrY_T0001556;gene_name=BCORP1;ID=exon:HG003_chrY_T0001556:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20419472	20427758	.	-	.	source_transcript=ENST00000761016.1;source_transcript_name=BCORP1-232;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001556;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001556;transcript_name=HG003_chrY_T0001556;gene_name=BCORP1;ID=intron:HG003_chrY_T0001556:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427821	.	-	.	source_transcript=ENST00000761016.1;source_transcript_name=BCORP1-232;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761016.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761016.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001556;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001556;transcript_name=HG003_chrY_T0001556;gene_name=BCORP1;ID=exon:HG003_chrY_T0001556:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427864	1000	-	.	source_transcript=ENST00000761012.1;source_transcript_name=BCORP1-228;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761012.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001557;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001557;gene_name=BCORP1;ID=HG003_chrY_T0001557;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761012.1;source_transcript_name=BCORP1-228;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761012.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001557;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001557;transcript_name=HG003_chrY_T0001557;gene_name=BCORP1;ID=exon:HG003_chrY_T0001557:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761012.1;source_transcript_name=BCORP1-228;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761012.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001557;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001557;transcript_name=HG003_chrY_T0001557;gene_name=BCORP1;ID=intron:HG003_chrY_T0001557:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761012.1;source_transcript_name=BCORP1-228;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761012.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001557;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001557;transcript_name=HG003_chrY_T0001557;gene_name=BCORP1;ID=exon:HG003_chrY_T0001557:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000761012.1;source_transcript_name=BCORP1-228;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761012.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001557;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001557;transcript_name=HG003_chrY_T0001557;gene_name=BCORP1;ID=intron:HG003_chrY_T0001557:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761012.1;source_transcript_name=BCORP1-228;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761012.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001557;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001557;transcript_name=HG003_chrY_T0001557;gene_name=BCORP1;ID=exon:HG003_chrY_T0001557:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427753	.	-	.	source_transcript=ENST00000761012.1;source_transcript_name=BCORP1-228;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761012.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001557;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001557;transcript_name=HG003_chrY_T0001557;gene_name=BCORP1;ID=intron:HG003_chrY_T0001557:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427754	20427864	.	-	.	source_transcript=ENST00000761012.1;source_transcript_name=BCORP1-228;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761012.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761012.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001557;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001557;transcript_name=HG003_chrY_T0001557;gene_name=BCORP1;ID=exon:HG003_chrY_T0001557:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427814	1000	-	.	source_transcript=ENST00000761024.1;source_transcript_name=BCORP1-240;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761024.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761024.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001558;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001558;gene_name=BCORP1;ID=HG003_chrY_T0001558;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761024.1;source_transcript_name=BCORP1-240;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761024.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761024.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001558;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001558;transcript_name=HG003_chrY_T0001558;gene_name=BCORP1;ID=exon:HG003_chrY_T0001558:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418800	.	-	.	source_transcript=ENST00000761024.1;source_transcript_name=BCORP1-240;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761024.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761024.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001558;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001558;transcript_name=HG003_chrY_T0001558;gene_name=BCORP1;ID=intron:HG003_chrY_T0001558:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761024.1;source_transcript_name=BCORP1-240;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761024.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761024.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001558;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001558;transcript_name=HG003_chrY_T0001558;gene_name=BCORP1;ID=exon:HG003_chrY_T0001558:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427753	.	-	.	source_transcript=ENST00000761024.1;source_transcript_name=BCORP1-240;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761024.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761024.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001558;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001558;transcript_name=HG003_chrY_T0001558;gene_name=BCORP1;ID=intron:HG003_chrY_T0001558:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427754	20427814	.	-	.	source_transcript=ENST00000761024.1;source_transcript_name=BCORP1-240;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761024.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761024.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001558;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001558;transcript_name=HG003_chrY_T0001558;gene_name=BCORP1;ID=exon:HG003_chrY_T0001558:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427821	1000	-	.	source_transcript=ENST00000761018.1;source_transcript_name=BCORP1-234;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761018.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001559;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001559;gene_name=BCORP1;ID=HG003_chrY_T0001559;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761018.1;source_transcript_name=BCORP1-234;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761018.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001559;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001559;transcript_name=HG003_chrY_T0001559;gene_name=BCORP1;ID=exon:HG003_chrY_T0001559:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761018.1;source_transcript_name=BCORP1-234;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761018.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001559;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001559;transcript_name=HG003_chrY_T0001559;gene_name=BCORP1;ID=intron:HG003_chrY_T0001559:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761018.1;source_transcript_name=BCORP1-234;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761018.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001559;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001559;transcript_name=HG003_chrY_T0001559;gene_name=BCORP1;ID=exon:HG003_chrY_T0001559:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761018.1;source_transcript_name=BCORP1-234;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761018.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001559;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001559;transcript_name=HG003_chrY_T0001559;gene_name=BCORP1;ID=intron:HG003_chrY_T0001559:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761018.1;source_transcript_name=BCORP1-234;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761018.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001559;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001559;transcript_name=HG003_chrY_T0001559;gene_name=BCORP1;ID=exon:HG003_chrY_T0001559:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427753	.	-	.	source_transcript=ENST00000761018.1;source_transcript_name=BCORP1-234;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761018.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001559;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001559;transcript_name=HG003_chrY_T0001559;gene_name=BCORP1;ID=intron:HG003_chrY_T0001559:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427754	20427821	.	-	.	source_transcript=ENST00000761018.1;source_transcript_name=BCORP1-234;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761018.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761018.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001559;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001559;transcript_name=HG003_chrY_T0001559;gene_name=BCORP1;ID=exon:HG003_chrY_T0001559:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427998	1000	-	.	source_transcript=ENST00000761009.1;source_transcript_name=BCORP1-225;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761009.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761009.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001560;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001560;gene_name=BCORP1;ID=HG003_chrY_T0001560;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761009.1;source_transcript_name=BCORP1-225;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761009.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761009.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001560;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001560;transcript_name=HG003_chrY_T0001560;gene_name=BCORP1;ID=exon:HG003_chrY_T0001560:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20427758	.	-	.	source_transcript=ENST00000761009.1;source_transcript_name=BCORP1-225;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761009.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761009.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001560;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001560;transcript_name=HG003_chrY_T0001560;gene_name=BCORP1;ID=intron:HG003_chrY_T0001560:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427998	.	-	.	source_transcript=ENST00000761009.1;source_transcript_name=BCORP1-225;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761009.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761009.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001560;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001560;transcript_name=HG003_chrY_T0001560;gene_name=BCORP1;ID=exon:HG003_chrY_T0001560:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20428005	1000	-	.	source_transcript=ENST00000761008.1;source_transcript_name=BCORP1-224;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761008.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001561;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001561;gene_name=BCORP1;ID=HG003_chrY_T0001561;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761008.1;source_transcript_name=BCORP1-224;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001561;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001561;transcript_name=HG003_chrY_T0001561;gene_name=BCORP1;ID=exon:HG003_chrY_T0001561:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761008.1;source_transcript_name=BCORP1-224;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001561;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001561;transcript_name=HG003_chrY_T0001561;gene_name=BCORP1;ID=intron:HG003_chrY_T0001561:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761008.1;source_transcript_name=BCORP1-224;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001561;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001561;transcript_name=HG003_chrY_T0001561;gene_name=BCORP1;ID=exon:HG003_chrY_T0001561:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20416832	.	-	.	source_transcript=ENST00000761008.1;source_transcript_name=BCORP1-224;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001561;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001561;transcript_name=HG003_chrY_T0001561;gene_name=BCORP1;ID=intron:HG003_chrY_T0001561:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416833	20416966	.	-	.	source_transcript=ENST00000761008.1;source_transcript_name=BCORP1-224;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001561;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001561;transcript_name=HG003_chrY_T0001561;gene_name=BCORP1;ID=exon:HG003_chrY_T0001561:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416967	20418006	.	-	.	source_transcript=ENST00000761008.1;source_transcript_name=BCORP1-224;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001561;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001561;transcript_name=HG003_chrY_T0001561;gene_name=BCORP1;ID=intron:HG003_chrY_T0001561:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761008.1;source_transcript_name=BCORP1-224;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001561;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001561;transcript_name=HG003_chrY_T0001561;gene_name=BCORP1;ID=exon:HG003_chrY_T0001561:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000761008.1;source_transcript_name=BCORP1-224;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001561;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001561;transcript_name=HG003_chrY_T0001561;gene_name=BCORP1;ID=intron:HG003_chrY_T0001561:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761008.1;source_transcript_name=BCORP1-224;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001561;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001561;transcript_name=HG003_chrY_T0001561;gene_name=BCORP1;ID=exon:HG003_chrY_T0001561:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761008.1;source_transcript_name=BCORP1-224;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001561;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001561;transcript_name=HG003_chrY_T0001561;gene_name=BCORP1;ID=intron:HG003_chrY_T0001561:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20428005	.	-	.	source_transcript=ENST00000761008.1;source_transcript_name=BCORP1-224;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001561;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001561;transcript_name=HG003_chrY_T0001561;gene_name=BCORP1;ID=exon:HG003_chrY_T0001561:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416167	20427786	1000	-	.	source_transcript=ENST00000761037.1;source_transcript_name=BCORP1-253;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761037.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761037.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001562;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001562;gene_name=BCORP1;ID=HG003_chrY_T0001562;Name=BCORP1
HG003_chrY	CAT	exon	20416167	20416331	.	-	.	source_transcript=ENST00000761037.1;source_transcript_name=BCORP1-253;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761037.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761037.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001562;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001562;transcript_name=HG003_chrY_T0001562;gene_name=BCORP1;ID=exon:HG003_chrY_T0001562:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20418006	.	-	.	source_transcript=ENST00000761037.1;source_transcript_name=BCORP1-253;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761037.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761037.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001562;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001562;transcript_name=HG003_chrY_T0001562;gene_name=BCORP1;ID=intron:HG003_chrY_T0001562:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761037.1;source_transcript_name=BCORP1-253;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761037.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761037.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001562;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001562;transcript_name=HG003_chrY_T0001562;gene_name=BCORP1;ID=exon:HG003_chrY_T0001562:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000761037.1;source_transcript_name=BCORP1-253;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761037.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761037.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001562;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001562;transcript_name=HG003_chrY_T0001562;gene_name=BCORP1;ID=intron:HG003_chrY_T0001562:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761037.1;source_transcript_name=BCORP1-253;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761037.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761037.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001562;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001562;transcript_name=HG003_chrY_T0001562;gene_name=BCORP1;ID=exon:HG003_chrY_T0001562:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20419390	.	-	.	source_transcript=ENST00000761037.1;source_transcript_name=BCORP1-253;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761037.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761037.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001562;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001562;transcript_name=HG003_chrY_T0001562;gene_name=BCORP1;ID=intron:HG003_chrY_T0001562:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20419391	20419471	.	-	.	source_transcript=ENST00000761037.1;source_transcript_name=BCORP1-253;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761037.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761037.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001562;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001562;transcript_name=HG003_chrY_T0001562;gene_name=BCORP1;ID=exon:HG003_chrY_T0001562:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20419472	20420116	.	-	.	source_transcript=ENST00000761037.1;source_transcript_name=BCORP1-253;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761037.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761037.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001562;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001562;transcript_name=HG003_chrY_T0001562;gene_name=BCORP1;ID=intron:HG003_chrY_T0001562:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761037.1;source_transcript_name=BCORP1-253;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761037.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761037.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001562;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001562;transcript_name=HG003_chrY_T0001562;gene_name=BCORP1;ID=exon:HG003_chrY_T0001562:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000761037.1;source_transcript_name=BCORP1-253;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761037.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761037.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001562;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001562;transcript_name=HG003_chrY_T0001562;gene_name=BCORP1;ID=intron:HG003_chrY_T0001562:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=ENST00000761037.1;source_transcript_name=BCORP1-253;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761037.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761037.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001562;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001562;transcript_name=HG003_chrY_T0001562;gene_name=BCORP1;ID=exon:HG003_chrY_T0001562:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416170	20427821	1000	-	.	source_transcript=ENST00000761020.1;source_transcript_name=BCORP1-236;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761020.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001563;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001563;gene_name=BCORP1;ID=HG003_chrY_T0001563;Name=BCORP1
HG003_chrY	CAT	exon	20416170	20416331	.	-	.	source_transcript=ENST00000761020.1;source_transcript_name=BCORP1-236;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761020.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001563;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001563;transcript_name=HG003_chrY_T0001563;gene_name=BCORP1;ID=exon:HG003_chrY_T0001563:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416787	.	-	.	source_transcript=ENST00000761020.1;source_transcript_name=BCORP1-236;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761020.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001563;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001563;transcript_name=HG003_chrY_T0001563;gene_name=BCORP1;ID=intron:HG003_chrY_T0001563:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416788	20416886	.	-	.	source_transcript=ENST00000761020.1;source_transcript_name=BCORP1-236;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761020.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001563;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001563;transcript_name=HG003_chrY_T0001563;gene_name=BCORP1;ID=exon:HG003_chrY_T0001563:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416887	20418800	.	-	.	source_transcript=ENST00000761020.1;source_transcript_name=BCORP1-236;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761020.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001563;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001563;transcript_name=HG003_chrY_T0001563;gene_name=BCORP1;ID=intron:HG003_chrY_T0001563:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761020.1;source_transcript_name=BCORP1-236;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761020.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001563;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001563;transcript_name=HG003_chrY_T0001563;gene_name=BCORP1;ID=exon:HG003_chrY_T0001563:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761020.1;source_transcript_name=BCORP1-236;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761020.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001563;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001563;transcript_name=HG003_chrY_T0001563;gene_name=BCORP1;ID=intron:HG003_chrY_T0001563:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427821	.	-	.	source_transcript=ENST00000761020.1;source_transcript_name=BCORP1-236;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761020.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761020.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001563;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001563;transcript_name=HG003_chrY_T0001563;gene_name=BCORP1;ID=exon:HG003_chrY_T0001563:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416175	20427812	1000	-	.	source_transcript=ENST00000761030.1;source_transcript_name=BCORP1-246;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761030.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001564;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001564;gene_name=BCORP1;ID=HG003_chrY_T0001564;Name=BCORP1
HG003_chrY	CAT	exon	20416175	20416331	.	-	.	source_transcript=ENST00000761030.1;source_transcript_name=BCORP1-246;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001564;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001564;transcript_name=HG003_chrY_T0001564;gene_name=BCORP1;ID=exon:HG003_chrY_T0001564:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761030.1;source_transcript_name=BCORP1-246;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001564;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001564;transcript_name=HG003_chrY_T0001564;gene_name=BCORP1;ID=intron:HG003_chrY_T0001564:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761030.1;source_transcript_name=BCORP1-246;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001564;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001564;transcript_name=HG003_chrY_T0001564;gene_name=BCORP1;ID=exon:HG003_chrY_T0001564:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20418006	.	-	.	source_transcript=ENST00000761030.1;source_transcript_name=BCORP1-246;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001564;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001564;transcript_name=HG003_chrY_T0001564;gene_name=BCORP1;ID=intron:HG003_chrY_T0001564:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761030.1;source_transcript_name=BCORP1-246;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001564;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001564;transcript_name=HG003_chrY_T0001564;gene_name=BCORP1;ID=exon:HG003_chrY_T0001564:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000761030.1;source_transcript_name=BCORP1-246;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001564;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001564;transcript_name=HG003_chrY_T0001564;gene_name=BCORP1;ID=intron:HG003_chrY_T0001564:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761030.1;source_transcript_name=BCORP1-246;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001564;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001564;transcript_name=HG003_chrY_T0001564;gene_name=BCORP1;ID=exon:HG003_chrY_T0001564:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20427758	.	-	.	source_transcript=ENST00000761030.1;source_transcript_name=BCORP1-246;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001564;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001564;transcript_name=HG003_chrY_T0001564;gene_name=BCORP1;ID=intron:HG003_chrY_T0001564:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427812	.	-	.	source_transcript=ENST00000761030.1;source_transcript_name=BCORP1-246;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001564;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001564;transcript_name=HG003_chrY_T0001564;gene_name=BCORP1;ID=exon:HG003_chrY_T0001564:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416175	20428013	1000	-	.	source_transcript=ENST00000761007.1;source_transcript_name=BCORP1-223;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761007.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761007.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001565;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001565;gene_name=BCORP1;ID=HG003_chrY_T0001565;Name=BCORP1
HG003_chrY	CAT	exon	20416175	20416331	.	-	.	source_transcript=ENST00000761007.1;source_transcript_name=BCORP1-223;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761007.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761007.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001565;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001565;transcript_name=HG003_chrY_T0001565;gene_name=BCORP1;ID=exon:HG003_chrY_T0001565:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761007.1;source_transcript_name=BCORP1-223;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761007.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761007.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001565;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001565;transcript_name=HG003_chrY_T0001565;gene_name=BCORP1;ID=intron:HG003_chrY_T0001565:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761007.1;source_transcript_name=BCORP1-223;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761007.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761007.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001565;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001565;transcript_name=HG003_chrY_T0001565;gene_name=BCORP1;ID=exon:HG003_chrY_T0001565:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20418816	.	-	.	source_transcript=ENST00000761007.1;source_transcript_name=BCORP1-223;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761007.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761007.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001565;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001565;transcript_name=HG003_chrY_T0001565;gene_name=BCORP1;ID=intron:HG003_chrY_T0001565:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761007.1;source_transcript_name=BCORP1-223;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761007.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761007.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001565;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001565;transcript_name=HG003_chrY_T0001565;gene_name=BCORP1;ID=exon:HG003_chrY_T0001565:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20419390	.	-	.	source_transcript=ENST00000761007.1;source_transcript_name=BCORP1-223;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761007.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761007.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001565;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001565;transcript_name=HG003_chrY_T0001565;gene_name=BCORP1;ID=intron:HG003_chrY_T0001565:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20419391	20419446	.	-	.	source_transcript=ENST00000761007.1;source_transcript_name=BCORP1-223;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761007.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761007.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001565;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001565;transcript_name=HG003_chrY_T0001565;gene_name=BCORP1;ID=exon:HG003_chrY_T0001565:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20419447	20420116	.	-	.	source_transcript=ENST00000761007.1;source_transcript_name=BCORP1-223;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761007.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761007.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001565;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001565;transcript_name=HG003_chrY_T0001565;gene_name=BCORP1;ID=intron:HG003_chrY_T0001565:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420201	.	-	.	source_transcript=ENST00000761007.1;source_transcript_name=BCORP1-223;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761007.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761007.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001565;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001565;transcript_name=HG003_chrY_T0001565;gene_name=BCORP1;ID=exon:HG003_chrY_T0001565:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420202	20427758	.	-	.	source_transcript=ENST00000761007.1;source_transcript_name=BCORP1-223;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761007.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761007.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001565;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001565;transcript_name=HG003_chrY_T0001565;gene_name=BCORP1;ID=intron:HG003_chrY_T0001565:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20428013	.	-	.	source_transcript=ENST00000761007.1;source_transcript_name=BCORP1-223;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761007.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761007.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001565;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001565;transcript_name=HG003_chrY_T0001565;gene_name=BCORP1;ID=exon:HG003_chrY_T0001565:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416175	20427784	1000	-	.	source_transcript=ENST00000761045.1;source_transcript_name=BCORP1-261;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761045.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761045.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001566;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001566;gene_name=BCORP1;ID=HG003_chrY_T0001566;Name=BCORP1
HG003_chrY	CAT	exon	20416175	20416331	.	-	.	source_transcript=ENST00000761045.1;source_transcript_name=BCORP1-261;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761045.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761045.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001566;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001566;transcript_name=HG003_chrY_T0001566;gene_name=BCORP1;ID=exon:HG003_chrY_T0001566:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761045.1;source_transcript_name=BCORP1-261;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761045.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761045.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001566;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001566;transcript_name=HG003_chrY_T0001566;gene_name=BCORP1;ID=intron:HG003_chrY_T0001566:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761045.1;source_transcript_name=BCORP1-261;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761045.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761045.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001566;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001566;transcript_name=HG003_chrY_T0001566;gene_name=BCORP1;ID=exon:HG003_chrY_T0001566:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20418800	.	-	.	source_transcript=ENST00000761045.1;source_transcript_name=BCORP1-261;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761045.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761045.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001566;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001566;transcript_name=HG003_chrY_T0001566;gene_name=BCORP1;ID=intron:HG003_chrY_T0001566:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761045.1;source_transcript_name=BCORP1-261;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761045.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761045.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001566;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001566;transcript_name=HG003_chrY_T0001566;gene_name=BCORP1;ID=exon:HG003_chrY_T0001566:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761045.1;source_transcript_name=BCORP1-261;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761045.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761045.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001566;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001566;transcript_name=HG003_chrY_T0001566;gene_name=BCORP1;ID=intron:HG003_chrY_T0001566:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761045.1;source_transcript_name=BCORP1-261;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761045.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761045.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001566;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001566;transcript_name=HG003_chrY_T0001566;gene_name=BCORP1;ID=exon:HG003_chrY_T0001566:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000761045.1;source_transcript_name=BCORP1-261;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761045.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761045.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001566;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001566;transcript_name=HG003_chrY_T0001566;gene_name=BCORP1;ID=intron:HG003_chrY_T0001566:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427784	.	-	.	source_transcript=ENST00000761045.1;source_transcript_name=BCORP1-261;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761045.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761045.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001566;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001566;transcript_name=HG003_chrY_T0001566;gene_name=BCORP1;ID=exon:HG003_chrY_T0001566:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416176	20427786	1000	-	.	source_transcript=ENST00000761044.1;source_transcript_name=BCORP1-260;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761044.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001567;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001567;gene_name=BCORP1;ID=HG003_chrY_T0001567;Name=BCORP1
HG003_chrY	CAT	exon	20416176	20416331	.	-	.	source_transcript=ENST00000761044.1;source_transcript_name=BCORP1-260;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001567;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001567;transcript_name=HG003_chrY_T0001567;gene_name=BCORP1;ID=exon:HG003_chrY_T0001567:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761044.1;source_transcript_name=BCORP1-260;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001567;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001567;transcript_name=HG003_chrY_T0001567;gene_name=BCORP1;ID=intron:HG003_chrY_T0001567:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761044.1;source_transcript_name=BCORP1-260;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001567;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001567;transcript_name=HG003_chrY_T0001567;gene_name=BCORP1;ID=exon:HG003_chrY_T0001567:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20418816	.	-	.	source_transcript=ENST00000761044.1;source_transcript_name=BCORP1-260;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001567;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001567;transcript_name=HG003_chrY_T0001567;gene_name=BCORP1;ID=intron:HG003_chrY_T0001567:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761044.1;source_transcript_name=BCORP1-260;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001567;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001567;transcript_name=HG003_chrY_T0001567;gene_name=BCORP1;ID=exon:HG003_chrY_T0001567:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20419390	.	-	.	source_transcript=ENST00000761044.1;source_transcript_name=BCORP1-260;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001567;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001567;transcript_name=HG003_chrY_T0001567;gene_name=BCORP1;ID=intron:HG003_chrY_T0001567:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20419391	20419471	.	-	.	source_transcript=ENST00000761044.1;source_transcript_name=BCORP1-260;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001567;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001567;transcript_name=HG003_chrY_T0001567;gene_name=BCORP1;ID=exon:HG003_chrY_T0001567:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20419472	20420116	.	-	.	source_transcript=ENST00000761044.1;source_transcript_name=BCORP1-260;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001567;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001567;transcript_name=HG003_chrY_T0001567;gene_name=BCORP1;ID=intron:HG003_chrY_T0001567:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761044.1;source_transcript_name=BCORP1-260;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001567;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001567;transcript_name=HG003_chrY_T0001567;gene_name=BCORP1;ID=exon:HG003_chrY_T0001567:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000761044.1;source_transcript_name=BCORP1-260;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001567;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001567;transcript_name=HG003_chrY_T0001567;gene_name=BCORP1;ID=intron:HG003_chrY_T0001567:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=ENST00000761044.1;source_transcript_name=BCORP1-260;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001567;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001567;transcript_name=HG003_chrY_T0001567;gene_name=BCORP1;ID=exon:HG003_chrY_T0001567:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20416178	20420196	1000	-	.	source_transcript=ENST00000761048.1;source_transcript_name=BCORP1-264;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761048.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001568;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001568;gene_name=BCORP1;ID=HG003_chrY_T0001568;Name=BCORP1
HG003_chrY	CAT	exon	20416178	20416331	.	-	.	source_transcript=ENST00000761048.1;source_transcript_name=BCORP1-264;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761048.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001568;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001568;transcript_name=HG003_chrY_T0001568;gene_name=BCORP1;ID=exon:HG003_chrY_T0001568:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416332	20416626	.	-	.	source_transcript=ENST00000761048.1;source_transcript_name=BCORP1-264;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761048.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001568;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001568;transcript_name=HG003_chrY_T0001568;gene_name=BCORP1;ID=intron:HG003_chrY_T0001568:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416627	20416741	.	-	.	source_transcript=ENST00000761048.1;source_transcript_name=BCORP1-264;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761048.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001568;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001568;transcript_name=HG003_chrY_T0001568;gene_name=BCORP1;ID=exon:HG003_chrY_T0001568:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416742	20416832	.	-	.	source_transcript=ENST00000761048.1;source_transcript_name=BCORP1-264;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761048.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001568;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001568;transcript_name=HG003_chrY_T0001568;gene_name=BCORP1;ID=intron:HG003_chrY_T0001568:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20416833	20416966	.	-	.	source_transcript=ENST00000761048.1;source_transcript_name=BCORP1-264;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761048.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001568;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001568;transcript_name=HG003_chrY_T0001568;gene_name=BCORP1;ID=exon:HG003_chrY_T0001568:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20416967	20418006	.	-	.	source_transcript=ENST00000761048.1;source_transcript_name=BCORP1-264;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761048.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001568;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001568;transcript_name=HG003_chrY_T0001568;gene_name=BCORP1;ID=intron:HG003_chrY_T0001568:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761048.1;source_transcript_name=BCORP1-264;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761048.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001568;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001568;transcript_name=HG003_chrY_T0001568;gene_name=BCORP1;ID=exon:HG003_chrY_T0001568:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761048.1;source_transcript_name=BCORP1-264;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761048.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001568;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001568;transcript_name=HG003_chrY_T0001568;gene_name=BCORP1;ID=intron:HG003_chrY_T0001568:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761048.1;source_transcript_name=BCORP1-264;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761048.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001568;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001568;transcript_name=HG003_chrY_T0001568;gene_name=BCORP1;ID=exon:HG003_chrY_T0001568:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761048.1;source_transcript_name=BCORP1-264;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761048.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001568;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001568;transcript_name=HG003_chrY_T0001568;gene_name=BCORP1;ID=intron:HG003_chrY_T0001568:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761048.1;source_transcript_name=BCORP1-264;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761048.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761048.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001568;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001568;transcript_name=HG003_chrY_T0001568;gene_name=BCORP1;ID=exon:HG003_chrY_T0001568:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20417127	20427786	1000	-	.	source_transcript=ENST00000761046.1;source_transcript_name=BCORP1-262;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761046.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761046.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001569;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001569;gene_name=BCORP1;ID=HG003_chrY_T0001569;Name=BCORP1
HG003_chrY	CAT	exon	20417127	20417589	.	-	.	source_transcript=ENST00000761046.1;source_transcript_name=BCORP1-262;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761046.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761046.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001569;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001569;transcript_name=HG003_chrY_T0001569;gene_name=BCORP1;ID=exon:HG003_chrY_T0001569:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20417590	20418006	.	-	.	source_transcript=ENST00000761046.1;source_transcript_name=BCORP1-262;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761046.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761046.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001569;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001569;transcript_name=HG003_chrY_T0001569;gene_name=BCORP1;ID=intron:HG003_chrY_T0001569:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761046.1;source_transcript_name=BCORP1-262;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761046.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761046.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001569;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001569;transcript_name=HG003_chrY_T0001569;gene_name=BCORP1;ID=exon:HG003_chrY_T0001569:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000761046.1;source_transcript_name=BCORP1-262;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761046.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761046.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001569;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001569;transcript_name=HG003_chrY_T0001569;gene_name=BCORP1;ID=intron:HG003_chrY_T0001569:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761046.1;source_transcript_name=BCORP1-262;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761046.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761046.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001569;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001569;transcript_name=HG003_chrY_T0001569;gene_name=BCORP1;ID=exon:HG003_chrY_T0001569:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761046.1;source_transcript_name=BCORP1-262;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761046.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761046.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001569;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001569;transcript_name=HG003_chrY_T0001569;gene_name=BCORP1;ID=intron:HG003_chrY_T0001569:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761046.1;source_transcript_name=BCORP1-262;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761046.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761046.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001569;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001569;transcript_name=HG003_chrY_T0001569;gene_name=BCORP1;ID=exon:HG003_chrY_T0001569:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427758	.	-	.	source_transcript=ENST00000761046.1;source_transcript_name=BCORP1-262;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761046.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761046.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001569;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001569;transcript_name=HG003_chrY_T0001569;gene_name=BCORP1;ID=intron:HG003_chrY_T0001569:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427759	20427786	.	-	.	source_transcript=ENST00000761046.1;source_transcript_name=BCORP1-262;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761046.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761046.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001569;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001569;transcript_name=HG003_chrY_T0001569;gene_name=BCORP1;ID=exon:HG003_chrY_T0001569:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20417295	20419446	1000	-	.	source_transcript=ENST00000761049.1;source_transcript_name=BCORP1-265;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761049.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761049.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001570;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001570;gene_name=BCORP1;ID=HG003_chrY_T0001570;Name=BCORP1
HG003_chrY	CAT	exon	20417295	20417589	.	-	.	source_transcript=ENST00000761049.1;source_transcript_name=BCORP1-265;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761049.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761049.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001570;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001570;transcript_name=HG003_chrY_T0001570;gene_name=BCORP1;ID=exon:HG003_chrY_T0001570:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20417590	20418006	.	-	.	source_transcript=ENST00000761049.1;source_transcript_name=BCORP1-265;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761049.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761049.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001570;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001570;transcript_name=HG003_chrY_T0001570;gene_name=BCORP1;ID=intron:HG003_chrY_T0001570:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761049.1;source_transcript_name=BCORP1-265;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761049.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761049.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001570;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001570;transcript_name=HG003_chrY_T0001570;gene_name=BCORP1;ID=exon:HG003_chrY_T0001570:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418816	.	-	.	source_transcript=ENST00000761049.1;source_transcript_name=BCORP1-265;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761049.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761049.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001570;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001570;transcript_name=HG003_chrY_T0001570;gene_name=BCORP1;ID=intron:HG003_chrY_T0001570:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418817	20418917	.	-	.	source_transcript=ENST00000761049.1;source_transcript_name=BCORP1-265;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761049.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761049.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001570;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001570;transcript_name=HG003_chrY_T0001570;gene_name=BCORP1;ID=exon:HG003_chrY_T0001570:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20419390	.	-	.	source_transcript=ENST00000761049.1;source_transcript_name=BCORP1-265;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761049.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761049.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001570;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001570;transcript_name=HG003_chrY_T0001570;gene_name=BCORP1;ID=intron:HG003_chrY_T0001570:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20419391	20419446	.	-	.	source_transcript=ENST00000761049.1;source_transcript_name=BCORP1-265;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761049.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761049.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001570;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001570;transcript_name=HG003_chrY_T0001570;gene_name=BCORP1;ID=exon:HG003_chrY_T0001570:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20417438	20427786	1000	-	.	source_transcript=ENST00000761047.1;source_transcript_name=BCORP1-263;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761047.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761047.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001571;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_G0000534;transcript_name=HG003_chrY_T0001571;gene_name=BCORP1;ID=HG003_chrY_T0001571;Name=BCORP1
HG003_chrY	CAT	exon	20417438	20417589	.	-	.	source_transcript=ENST00000761047.1;source_transcript_name=BCORP1-263;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761047.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761047.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001571;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001571;transcript_name=HG003_chrY_T0001571;gene_name=BCORP1;ID=exon:HG003_chrY_T0001571:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20417590	20418006	.	-	.	source_transcript=ENST00000761047.1;source_transcript_name=BCORP1-263;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761047.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761047.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001571;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001571;transcript_name=HG003_chrY_T0001571;gene_name=BCORP1;ID=intron:HG003_chrY_T0001571:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418007	20418066	.	-	.	source_transcript=ENST00000761047.1;source_transcript_name=BCORP1-263;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761047.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761047.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001571;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001571;transcript_name=HG003_chrY_T0001571;gene_name=BCORP1;ID=exon:HG003_chrY_T0001571:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418067	20418800	.	-	.	source_transcript=ENST00000761047.1;source_transcript_name=BCORP1-263;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761047.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761047.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001571;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001571;transcript_name=HG003_chrY_T0001571;gene_name=BCORP1;ID=intron:HG003_chrY_T0001571:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20418801	20418917	.	-	.	source_transcript=ENST00000761047.1;source_transcript_name=BCORP1-263;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761047.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761047.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001571;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001571;transcript_name=HG003_chrY_T0001571;gene_name=BCORP1;ID=exon:HG003_chrY_T0001571:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20418918	20420116	.	-	.	source_transcript=ENST00000761047.1;source_transcript_name=BCORP1-263;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761047.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761047.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001571;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001571;transcript_name=HG003_chrY_T0001571;gene_name=BCORP1;ID=intron:HG003_chrY_T0001571:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20420117	20420196	.	-	.	source_transcript=ENST00000761047.1;source_transcript_name=BCORP1-263;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761047.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761047.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001571;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001571;transcript_name=HG003_chrY_T0001571;gene_name=BCORP1;ID=exon:HG003_chrY_T0001571:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20420197	20427753	.	-	.	source_transcript=ENST00000761047.1;source_transcript_name=BCORP1-263;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761047.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761047.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001571;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001571;transcript_name=HG003_chrY_T0001571;gene_name=BCORP1;ID=intron:HG003_chrY_T0001571:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20427754	20427786	.	-	.	source_transcript=ENST00000761047.1;source_transcript_name=BCORP1-263;source_gene=ENSG00000291031.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291031.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000761047.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000761047.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001571;gene_id=HG003_chrY_G0000534;Parent=HG003_chrY_T0001571;transcript_name=HG003_chrY_T0001571;gene_name=BCORP1;ID=exon:HG003_chrY_T0001571:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20317386	20345667	.	-	.	source_gene_common_name=BCORP1;source_gene=ENSG00000215580.13;gene_id=HG003_chrY_G0000535;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=BCORP1;gene_sources=liftoff;ID=HG003_chrY_G0000535;Name=BCORP1
HG003_chrY	CAT	transcript	20317386	20345667	1000	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_G0000535;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=HG003_chrY_T0001509;Name=BCORP1
HG003_chrY	CAT	exon	20317386	20317665	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=exon:HG003_chrY_T0001509:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20317666	20319709	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=intron:HG003_chrY_T0001509:0;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20319710	20319865	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=exon:HG003_chrY_T0001509:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20319866	20320074	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=intron:HG003_chrY_T0001509:1;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20320075	20320152	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=exon:HG003_chrY_T0001509:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20320153	20320744	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=intron:HG003_chrY_T0001509:2;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20320745	20320890	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=exon:HG003_chrY_T0001509:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20320891	20327238	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=intron:HG003_chrY_T0001509:3;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20327239	20327490	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=exon:HG003_chrY_T0001509:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20327491	20327846	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=intron:HG003_chrY_T0001509:4;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20327847	20328157	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=exon:HG003_chrY_T0001509:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20328158	20334687	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=intron:HG003_chrY_T0001509:5;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20334688	20335033	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=exon:HG003_chrY_T0001509:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20335034	20335422	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=intron:HG003_chrY_T0001509:6;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20335423	20335686	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=exon:HG003_chrY_T0001509:7;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20335687	20340947	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=intron:HG003_chrY_T0001509:7;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20340948	20341077	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=exon:HG003_chrY_T0001509:8;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20341078	20341473	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=intron:HG003_chrY_T0001509:8;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20341474	20341521	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=exon:HG003_chrY_T0001509:9;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20341522	20342449	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=intron:HG003_chrY_T0001509:9;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20342450	20345667	.	-	.	source_transcript=ENST00000513194.2;source_transcript_name=BCORP1-201;source_gene=ENSG00000215580.13;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215580.13;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000513194.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000513194.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BCORP1;transcript_id=HG003_chrY_T0001509;gene_id=HG003_chrY_G0000535;Parent=HG003_chrY_T0001509;transcript_name=HG003_chrY_T0001509;gene_name=BCORP1;ID=exon:HG003_chrY_T0001509:10;Name=BCORP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20428090	20467053	.	+	.	source_gene_common_name=TXLNGY;source_gene=ENSG00000291033.2;gene_id=HG003_chrY_G0000536;gene_biotype=lncRNA;gene_name=TXLNGY;gene_sources=liftoff;ID=HG003_chrY_G0000536;Name=TXLNGY
HG003_chrY	CAT	transcript	20428090	20451024	1000	+	.	source_transcript=ENST00000407724.7;source_transcript_name=TXLNGY-203;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000407724.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000407724.7;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001572;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001572;gene_name=TXLNGY;ID=HG003_chrY_T0001572;Name=TXLNGY
HG003_chrY	CAT	exon	20428090	20428259	.	+	.	source_transcript=ENST00000407724.7;source_transcript_name=TXLNGY-203;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000407724.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000407724.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001572;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001572;transcript_name=HG003_chrY_T0001572;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001572:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000407724.7;source_transcript_name=TXLNGY-203;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000407724.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000407724.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001572;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001572;transcript_name=HG003_chrY_T0001572;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001572:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000407724.7;source_transcript_name=TXLNGY-203;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000407724.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000407724.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001572;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001572;transcript_name=HG003_chrY_T0001572;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001572:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000407724.7;source_transcript_name=TXLNGY-203;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000407724.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000407724.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001572;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001572;transcript_name=HG003_chrY_T0001572;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001572:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20449427	.	+	.	source_transcript=ENST00000407724.7;source_transcript_name=TXLNGY-203;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000407724.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000407724.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001572;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001572;transcript_name=HG003_chrY_T0001572;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001572:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450303	.	+	.	source_transcript=ENST00000407724.7;source_transcript_name=TXLNGY-203;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000407724.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000407724.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001572;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001572;transcript_name=HG003_chrY_T0001572;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001572:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450304	20450389	.	+	.	source_transcript=ENST00000407724.7;source_transcript_name=TXLNGY-203;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000407724.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000407724.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001572;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001572;transcript_name=HG003_chrY_T0001572;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001572:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000407724.7;source_transcript_name=TXLNGY-203;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000407724.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000407724.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001572;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001572;transcript_name=HG003_chrY_T0001572;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001572:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451024	.	+	.	source_transcript=ENST00000407724.7;source_transcript_name=TXLNGY-203;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000407724.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000407724.7;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001572;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001572;transcript_name=HG003_chrY_T0001572;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001572:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428090	20454942	1000	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=HG003_chrY_T0001573;Name=TXLNGY
HG003_chrY	CAT	exon	20428090	20428347	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001573:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001573:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001573:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001573:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20449188	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001573:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449189	20449319	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001573:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449320	20449427	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001573:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450297	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001573:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001573:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20452556	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001573:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20452557	20452736	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001573:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001573:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454942	.	+	.	source_transcript=ENST00000588613.6;source_transcript_name=TXLNGY-211;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000588613.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000588613.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001573;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001573;transcript_name=HG003_chrY_T0001573;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001573:6;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428103	20448936	1000	+	.	source_transcript=ENST00000789742.1;source_transcript_name=TXLNGY-243;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789742.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001574;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001574;gene_name=TXLNGY;ID=HG003_chrY_T0001574;Name=TXLNGY
HG003_chrY	CAT	exon	20428103	20428347	.	+	.	source_transcript=ENST00000789742.1;source_transcript_name=TXLNGY-243;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001574;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001574;transcript_name=HG003_chrY_T0001574;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001574:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000789742.1;source_transcript_name=TXLNGY-243;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001574;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001574;transcript_name=HG003_chrY_T0001574;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001574:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448936	.	+	.	source_transcript=ENST00000789742.1;source_transcript_name=TXLNGY-243;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789742.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789742.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001574;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001574;transcript_name=HG003_chrY_T0001574;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001574:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428105	20429348	1000	+	.	source_transcript=ENST00000688167.3;source_transcript_name=TXLNGY-217;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000688167.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000688167.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001575;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001575;gene_name=TXLNGY;ID=HG003_chrY_T0001575;Name=TXLNGY
HG003_chrY	CAT	exon	20428105	20429348	.	+	.	source_transcript=ENST00000688167.3;source_transcript_name=TXLNGY-217;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000688167.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000688167.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001575;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001575;transcript_name=HG003_chrY_T0001575;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001575:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428105	20450624	1000	+	.	source_transcript=ENST00000447202.3;source_transcript_name=TXLNGY-204;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000447202.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000447202.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001576;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001576;gene_name=TXLNGY;ID=HG003_chrY_T0001576;Name=TXLNGY
HG003_chrY	CAT	exon	20428105	20428728	.	+	.	source_transcript=ENST00000447202.3;source_transcript_name=TXLNGY-204;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000447202.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000447202.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001576;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001576;transcript_name=HG003_chrY_T0001576;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001576:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428729	20447986	.	+	.	source_transcript=ENST00000447202.3;source_transcript_name=TXLNGY-204;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000447202.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000447202.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001576;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001576;transcript_name=HG003_chrY_T0001576;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001576:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20450624	.	+	.	source_transcript=ENST00000447202.3;source_transcript_name=TXLNGY-204;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000447202.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000447202.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001576;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001576;transcript_name=HG003_chrY_T0001576;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001576:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428106	20448935	1000	+	.	source_transcript=ENST00000789743.1;source_transcript_name=TXLNGY-244;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789743.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789743.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001577;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001577;gene_name=TXLNGY;ID=HG003_chrY_T0001577;Name=TXLNGY
HG003_chrY	CAT	exon	20428106	20428259	.	+	.	source_transcript=ENST00000789743.1;source_transcript_name=TXLNGY-244;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789743.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789743.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001577;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001577;transcript_name=HG003_chrY_T0001577;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001577:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000789743.1;source_transcript_name=TXLNGY-244;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789743.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789743.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001577;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001577;transcript_name=HG003_chrY_T0001577;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001577:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448935	.	+	.	source_transcript=ENST00000789743.1;source_transcript_name=TXLNGY-244;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789743.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789743.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001577;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001577;transcript_name=HG003_chrY_T0001577;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001577:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428106	20451200	1000	+	.	source_transcript=ENST00000459719.8;source_transcript_name=TXLNGY-206;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000459719.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000459719.8;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001578;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001578;gene_name=TXLNGY;ID=HG003_chrY_T0001578;Name=TXLNGY
HG003_chrY	CAT	exon	20428106	20428347	.	+	.	source_transcript=ENST00000459719.8;source_transcript_name=TXLNGY-206;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000459719.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000459719.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001578;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001578;transcript_name=HG003_chrY_T0001578;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001578:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000459719.8;source_transcript_name=TXLNGY-206;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000459719.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000459719.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001578;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001578;transcript_name=HG003_chrY_T0001578;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001578:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000459719.8;source_transcript_name=TXLNGY-206;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000459719.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000459719.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001578;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001578;transcript_name=HG003_chrY_T0001578;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001578:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000459719.8;source_transcript_name=TXLNGY-206;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000459719.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000459719.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001578;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001578;transcript_name=HG003_chrY_T0001578;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001578:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20450389	.	+	.	source_transcript=ENST00000459719.8;source_transcript_name=TXLNGY-206;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000459719.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000459719.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001578;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001578;transcript_name=HG003_chrY_T0001578;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001578:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000459719.8;source_transcript_name=TXLNGY-206;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000459719.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000459719.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001578;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001578;transcript_name=HG003_chrY_T0001578;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001578:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451200	.	+	.	source_transcript=ENST00000459719.8;source_transcript_name=TXLNGY-206;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000459719.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000459719.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001578;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001578;transcript_name=HG003_chrY_T0001578;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001578:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428106	20451200	1000	+	.	source_transcript=ENST00000686905.2;source_transcript_name=TXLNGY-216;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686905.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686905.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001579;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001579;gene_name=TXLNGY;ID=HG003_chrY_T0001579;Name=TXLNGY
HG003_chrY	CAT	exon	20428106	20428259	.	+	.	source_transcript=ENST00000686905.2;source_transcript_name=TXLNGY-216;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686905.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686905.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001579;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001579;transcript_name=HG003_chrY_T0001579;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001579:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000686905.2;source_transcript_name=TXLNGY-216;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686905.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686905.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001579;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001579;transcript_name=HG003_chrY_T0001579;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001579:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000686905.2;source_transcript_name=TXLNGY-216;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686905.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686905.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001579;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001579;transcript_name=HG003_chrY_T0001579;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001579:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000686905.2;source_transcript_name=TXLNGY-216;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686905.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686905.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001579;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001579;transcript_name=HG003_chrY_T0001579;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001579:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20451200	.	+	.	source_transcript=ENST00000686905.2;source_transcript_name=TXLNGY-216;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686905.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686905.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001579;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001579;transcript_name=HG003_chrY_T0001579;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001579:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428108	20451196	1000	+	.	source_transcript=ENST00000693214.2;source_transcript_name=TXLNGY-218;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693214.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000693214.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001580;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001580;gene_name=TXLNGY;ID=HG003_chrY_T0001580;Name=TXLNGY
HG003_chrY	CAT	exon	20428108	20428347	.	+	.	source_transcript=ENST00000693214.2;source_transcript_name=TXLNGY-218;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693214.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000693214.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001580;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001580;transcript_name=HG003_chrY_T0001580;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001580:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000693214.2;source_transcript_name=TXLNGY-218;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693214.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000693214.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001580;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001580;transcript_name=HG003_chrY_T0001580;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001580:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000693214.2;source_transcript_name=TXLNGY-218;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693214.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000693214.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001580;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001580;transcript_name=HG003_chrY_T0001580;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001580:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000693214.2;source_transcript_name=TXLNGY-218;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693214.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000693214.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001580;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001580;transcript_name=HG003_chrY_T0001580;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001580:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20451196	.	+	.	source_transcript=ENST00000693214.2;source_transcript_name=TXLNGY-218;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000693214.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000693214.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001580;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001580;transcript_name=HG003_chrY_T0001580;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001580:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428108	20454942	1000	+	.	source_transcript=ENST00000789719.1;source_transcript_name=TXLNGY-220;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789719.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001581;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001581;gene_name=TXLNGY;ID=HG003_chrY_T0001581;Name=TXLNGY
HG003_chrY	CAT	exon	20428108	20428347	.	+	.	source_transcript=ENST00000789719.1;source_transcript_name=TXLNGY-220;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001581;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001581;transcript_name=HG003_chrY_T0001581;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001581:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000789719.1;source_transcript_name=TXLNGY-220;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001581;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001581;transcript_name=HG003_chrY_T0001581;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001581:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789719.1;source_transcript_name=TXLNGY-220;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001581;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001581;transcript_name=HG003_chrY_T0001581;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001581:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000789719.1;source_transcript_name=TXLNGY-220;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001581;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001581;transcript_name=HG003_chrY_T0001581;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001581:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20449188	.	+	.	source_transcript=ENST00000789719.1;source_transcript_name=TXLNGY-220;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001581;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001581;transcript_name=HG003_chrY_T0001581;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001581:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449189	20450297	.	+	.	source_transcript=ENST00000789719.1;source_transcript_name=TXLNGY-220;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001581;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001581;transcript_name=HG003_chrY_T0001581;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001581:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789719.1;source_transcript_name=TXLNGY-220;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001581;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001581;transcript_name=HG003_chrY_T0001581;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001581:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20452556	.	+	.	source_transcript=ENST00000789719.1;source_transcript_name=TXLNGY-220;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001581;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001581;transcript_name=HG003_chrY_T0001581;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001581:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20452557	20452736	.	+	.	source_transcript=ENST00000789719.1;source_transcript_name=TXLNGY-220;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001581;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001581;transcript_name=HG003_chrY_T0001581;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001581:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=ENST00000789719.1;source_transcript_name=TXLNGY-220;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001581;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001581;transcript_name=HG003_chrY_T0001581;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001581:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454942	.	+	.	source_transcript=ENST00000789719.1;source_transcript_name=TXLNGY-220;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789719.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789719.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001581;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001581;transcript_name=HG003_chrY_T0001581;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001581:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428111	20450626	1000	+	.	source_transcript=ENST00000789739.1;source_transcript_name=TXLNGY-240;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789739.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001582;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001582;gene_name=TXLNGY;ID=HG003_chrY_T0001582;Name=TXLNGY
HG003_chrY	CAT	exon	20428111	20428347	.	+	.	source_transcript=ENST00000789739.1;source_transcript_name=TXLNGY-240;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789739.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001582;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001582;transcript_name=HG003_chrY_T0001582;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001582:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20430161	.	+	.	source_transcript=ENST00000789739.1;source_transcript_name=TXLNGY-240;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789739.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001582;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001582;transcript_name=HG003_chrY_T0001582;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001582:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20430162	20430236	.	+	.	source_transcript=ENST00000789739.1;source_transcript_name=TXLNGY-240;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789739.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001582;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001582;transcript_name=HG003_chrY_T0001582;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001582:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20430237	20447986	.	+	.	source_transcript=ENST00000789739.1;source_transcript_name=TXLNGY-240;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789739.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001582;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001582;transcript_name=HG003_chrY_T0001582;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001582:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789739.1;source_transcript_name=TXLNGY-240;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789739.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001582;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001582;transcript_name=HG003_chrY_T0001582;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001582:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000789739.1;source_transcript_name=TXLNGY-240;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789739.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001582;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001582;transcript_name=HG003_chrY_T0001582;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001582:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20450626	.	+	.	source_transcript=ENST00000789739.1;source_transcript_name=TXLNGY-240;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789739.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789739.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001582;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001582;transcript_name=HG003_chrY_T0001582;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001582:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428119	20454938	1000	+	.	source_transcript=ENST00000789720.1;source_transcript_name=TXLNGY-221;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789720.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001583;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001583;gene_name=TXLNGY;ID=HG003_chrY_T0001583;Name=TXLNGY
HG003_chrY	CAT	exon	20428119	20428347	.	+	.	source_transcript=ENST00000789720.1;source_transcript_name=TXLNGY-221;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001583;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001583;transcript_name=HG003_chrY_T0001583;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001583:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000789720.1;source_transcript_name=TXLNGY-221;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001583;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001583;transcript_name=HG003_chrY_T0001583;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001583:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789720.1;source_transcript_name=TXLNGY-221;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001583;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001583;transcript_name=HG003_chrY_T0001583;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001583:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450297	.	+	.	source_transcript=ENST00000789720.1;source_transcript_name=TXLNGY-221;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001583;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001583;transcript_name=HG003_chrY_T0001583;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001583:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789720.1;source_transcript_name=TXLNGY-221;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001583;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001583;transcript_name=HG003_chrY_T0001583;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001583:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20454175	.	+	.	source_transcript=ENST00000789720.1;source_transcript_name=TXLNGY-221;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001583;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001583;transcript_name=HG003_chrY_T0001583;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001583:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454938	.	+	.	source_transcript=ENST00000789720.1;source_transcript_name=TXLNGY-221;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789720.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001583;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001583;transcript_name=HG003_chrY_T0001583;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001583:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428124	20451200	1000	+	.	source_transcript=ENST00000589075.6;source_transcript_name=TXLNGY-212;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000589075.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000589075.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001584;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001584;gene_name=TXLNGY;ID=HG003_chrY_T0001584;Name=TXLNGY
HG003_chrY	CAT	exon	20428124	20428347	.	+	.	source_transcript=ENST00000589075.6;source_transcript_name=TXLNGY-212;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000589075.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000589075.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001584;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001584;transcript_name=HG003_chrY_T0001584;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001584:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000589075.6;source_transcript_name=TXLNGY-212;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000589075.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000589075.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001584;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001584;transcript_name=HG003_chrY_T0001584;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001584:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000589075.6;source_transcript_name=TXLNGY-212;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000589075.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000589075.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001584;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001584;transcript_name=HG003_chrY_T0001584;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001584:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000589075.6;source_transcript_name=TXLNGY-212;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000589075.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000589075.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001584;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001584;transcript_name=HG003_chrY_T0001584;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001584:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20449188	.	+	.	source_transcript=ENST00000589075.6;source_transcript_name=TXLNGY-212;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000589075.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000589075.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001584;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001584;transcript_name=HG003_chrY_T0001584;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001584:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449189	20449319	.	+	.	source_transcript=ENST00000589075.6;source_transcript_name=TXLNGY-212;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000589075.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000589075.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001584;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001584;transcript_name=HG003_chrY_T0001584;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001584:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449320	20449427	.	+	.	source_transcript=ENST00000589075.6;source_transcript_name=TXLNGY-212;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000589075.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000589075.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001584;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001584;transcript_name=HG003_chrY_T0001584;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001584:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450297	.	+	.	source_transcript=ENST00000589075.6;source_transcript_name=TXLNGY-212;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000589075.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000589075.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001584;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001584;transcript_name=HG003_chrY_T0001584;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001584:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000589075.6;source_transcript_name=TXLNGY-212;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000589075.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000589075.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001584;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001584;transcript_name=HG003_chrY_T0001584;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001584:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000589075.6;source_transcript_name=TXLNGY-212;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000589075.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000589075.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001584;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001584;transcript_name=HG003_chrY_T0001584;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001584:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451200	.	+	.	source_transcript=ENST00000589075.6;source_transcript_name=TXLNGY-212;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000589075.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000589075.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001584;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001584;transcript_name=HG003_chrY_T0001584;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001584:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428127	20451053	1000	+	.	source_transcript=ENST00000789734.1;source_transcript_name=TXLNGY-235;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789734.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001585;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001585;gene_name=TXLNGY;ID=HG003_chrY_T0001585;Name=TXLNGY
HG003_chrY	CAT	exon	20428127	20428347	.	+	.	source_transcript=ENST00000789734.1;source_transcript_name=TXLNGY-235;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789734.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001585;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001585;transcript_name=HG003_chrY_T0001585;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001585:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20429650	.	+	.	source_transcript=ENST00000789734.1;source_transcript_name=TXLNGY-235;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789734.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001585;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001585;transcript_name=HG003_chrY_T0001585;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001585:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20429651	20429696	.	+	.	source_transcript=ENST00000789734.1;source_transcript_name=TXLNGY-235;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789734.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001585;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001585;transcript_name=HG003_chrY_T0001585;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001585:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20429697	20447986	.	+	.	source_transcript=ENST00000789734.1;source_transcript_name=TXLNGY-235;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789734.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001585;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001585;transcript_name=HG003_chrY_T0001585;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001585:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789734.1;source_transcript_name=TXLNGY-235;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789734.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001585;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001585;transcript_name=HG003_chrY_T0001585;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001585:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450297	.	+	.	source_transcript=ENST00000789734.1;source_transcript_name=TXLNGY-235;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789734.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001585;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001585;transcript_name=HG003_chrY_T0001585;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001585:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789734.1;source_transcript_name=TXLNGY-235;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789734.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001585;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001585;transcript_name=HG003_chrY_T0001585;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001585:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000789734.1;source_transcript_name=TXLNGY-235;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789734.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001585;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001585;transcript_name=HG003_chrY_T0001585;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001585:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451053	.	+	.	source_transcript=ENST00000789734.1;source_transcript_name=TXLNGY-235;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789734.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001585;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001585;transcript_name=HG003_chrY_T0001585;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001585:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428127	20451200	1000	+	.	source_transcript=ENST00000789728.1;source_transcript_name=TXLNGY-229;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789728.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001586;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001586;gene_name=TXLNGY;ID=HG003_chrY_T0001586;Name=TXLNGY
HG003_chrY	CAT	exon	20428127	20428347	.	+	.	source_transcript=ENST00000789728.1;source_transcript_name=TXLNGY-229;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001586;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001586;transcript_name=HG003_chrY_T0001586;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001586:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000789728.1;source_transcript_name=TXLNGY-229;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001586;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001586;transcript_name=HG003_chrY_T0001586;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001586:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789728.1;source_transcript_name=TXLNGY-229;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001586;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001586;transcript_name=HG003_chrY_T0001586;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001586:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449319	.	+	.	source_transcript=ENST00000789728.1;source_transcript_name=TXLNGY-229;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001586;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001586;transcript_name=HG003_chrY_T0001586;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001586:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449320	20449427	.	+	.	source_transcript=ENST00000789728.1;source_transcript_name=TXLNGY-229;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001586;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001586;transcript_name=HG003_chrY_T0001586;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001586:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450297	.	+	.	source_transcript=ENST00000789728.1;source_transcript_name=TXLNGY-229;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001586;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001586;transcript_name=HG003_chrY_T0001586;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001586:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789728.1;source_transcript_name=TXLNGY-229;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001586;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001586;transcript_name=HG003_chrY_T0001586;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001586:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000789728.1;source_transcript_name=TXLNGY-229;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001586;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001586;transcript_name=HG003_chrY_T0001586;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001586:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451200	.	+	.	source_transcript=ENST00000789728.1;source_transcript_name=TXLNGY-229;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789728.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789728.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001586;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001586;transcript_name=HG003_chrY_T0001586;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001586:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428127	20454938	1000	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=HG003_chrY_T0001587;Name=TXLNGY
HG003_chrY	CAT	exon	20428127	20428259	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001587:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001587:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001587:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001587:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20449188	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001587:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449189	20449319	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001587:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449320	20449427	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001587:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450297	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001587:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001587:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20451386	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001587:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20451387	20451549	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001587:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20451550	20452556	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001587:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20452557	20452736	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001587:6;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001587:6;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454938	.	+	.	source_transcript=ENST00000488280.2;source_transcript_name=TXLNGY-207;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000488280.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000488280.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001587;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001587;transcript_name=HG003_chrY_T0001587;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001587:7;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428127	20451200	1000	+	.	source_transcript=ENST00000447520.6;source_transcript_name=TXLNGY-205;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447520.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000447520.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001588;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001588;gene_name=TXLNGY;ID=HG003_chrY_T0001588;Name=TXLNGY
HG003_chrY	CAT	exon	20428127	20428259	.	+	.	source_transcript=ENST00000447520.6;source_transcript_name=TXLNGY-205;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447520.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000447520.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001588;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001588;transcript_name=HG003_chrY_T0001588;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001588:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000447520.6;source_transcript_name=TXLNGY-205;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447520.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000447520.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001588;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001588;transcript_name=HG003_chrY_T0001588;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001588:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000447520.6;source_transcript_name=TXLNGY-205;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447520.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000447520.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001588;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001588;transcript_name=HG003_chrY_T0001588;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001588:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450297	.	+	.	source_transcript=ENST00000447520.6;source_transcript_name=TXLNGY-205;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447520.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000447520.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001588;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001588;transcript_name=HG003_chrY_T0001588;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001588:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000447520.6;source_transcript_name=TXLNGY-205;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447520.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000447520.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001588;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001588;transcript_name=HG003_chrY_T0001588;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001588:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000447520.6;source_transcript_name=TXLNGY-205;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447520.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000447520.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001588;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001588;transcript_name=HG003_chrY_T0001588;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001588:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451200	.	+	.	source_transcript=ENST00000447520.6;source_transcript_name=TXLNGY-205;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000447520.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000447520.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001588;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001588;transcript_name=HG003_chrY_T0001588;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001588:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428127	20454935	1000	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=HG003_chrY_T0001589;Name=TXLNGY
HG003_chrY	CAT	exon	20428127	20428259	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001589:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001589:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001589:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001589:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20449188	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001589:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449189	20449319	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001589:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449320	20449427	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001589:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450297	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001589:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001589:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20452556	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001589:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20452557	20452736	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001589:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001589:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454935	.	+	.	source_transcript=ENST00000789722.1;source_transcript_name=TXLNGY-223;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789722.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001589;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001589;transcript_name=HG003_chrY_T0001589;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001589:6;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428127	20451200	1000	+	.	source_transcript=ENST00000686158.2;source_transcript_name=TXLNGY-215;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686158.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686158.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001590;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001590;gene_name=TXLNGY;ID=HG003_chrY_T0001590;Name=TXLNGY
HG003_chrY	CAT	exon	20428127	20428347	.	+	.	source_transcript=ENST00000686158.2;source_transcript_name=TXLNGY-215;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686158.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686158.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001590;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001590;transcript_name=HG003_chrY_T0001590;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001590:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000686158.2;source_transcript_name=TXLNGY-215;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686158.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686158.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001590;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001590;transcript_name=HG003_chrY_T0001590;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001590:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000686158.2;source_transcript_name=TXLNGY-215;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686158.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686158.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001590;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001590;transcript_name=HG003_chrY_T0001590;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001590:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450297	.	+	.	source_transcript=ENST00000686158.2;source_transcript_name=TXLNGY-215;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686158.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686158.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001590;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001590;transcript_name=HG003_chrY_T0001590;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001590:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000686158.2;source_transcript_name=TXLNGY-215;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686158.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686158.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001590;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001590;transcript_name=HG003_chrY_T0001590;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001590:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000686158.2;source_transcript_name=TXLNGY-215;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686158.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686158.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001590;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001590;transcript_name=HG003_chrY_T0001590;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001590:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451200	.	+	.	source_transcript=ENST00000686158.2;source_transcript_name=TXLNGY-215;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000686158.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000686158.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001590;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001590;transcript_name=HG003_chrY_T0001590;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001590:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428127	20454938	1000	+	.	source_transcript=ENST00000789721.1;source_transcript_name=TXLNGY-222;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789721.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001591;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001591;gene_name=TXLNGY;ID=HG003_chrY_T0001591;Name=TXLNGY
HG003_chrY	CAT	exon	20428127	20428259	.	+	.	source_transcript=ENST00000789721.1;source_transcript_name=TXLNGY-222;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001591;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001591;transcript_name=HG003_chrY_T0001591;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001591:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000789721.1;source_transcript_name=TXLNGY-222;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001591;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001591;transcript_name=HG003_chrY_T0001591;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001591:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789721.1;source_transcript_name=TXLNGY-222;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001591;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001591;transcript_name=HG003_chrY_T0001591;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001591:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449319	.	+	.	source_transcript=ENST00000789721.1;source_transcript_name=TXLNGY-222;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001591;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001591;transcript_name=HG003_chrY_T0001591;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001591:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449320	20449427	.	+	.	source_transcript=ENST00000789721.1;source_transcript_name=TXLNGY-222;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001591;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001591;transcript_name=HG003_chrY_T0001591;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001591:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450297	.	+	.	source_transcript=ENST00000789721.1;source_transcript_name=TXLNGY-222;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001591;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001591;transcript_name=HG003_chrY_T0001591;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001591:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789721.1;source_transcript_name=TXLNGY-222;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001591;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001591;transcript_name=HG003_chrY_T0001591;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001591:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20452556	.	+	.	source_transcript=ENST00000789721.1;source_transcript_name=TXLNGY-222;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001591;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001591;transcript_name=HG003_chrY_T0001591;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001591:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20452557	20452736	.	+	.	source_transcript=ENST00000789721.1;source_transcript_name=TXLNGY-222;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001591;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001591;transcript_name=HG003_chrY_T0001591;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001591:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=ENST00000789721.1;source_transcript_name=TXLNGY-222;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001591;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001591;transcript_name=HG003_chrY_T0001591;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001591:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454938	.	+	.	source_transcript=ENST00000789721.1;source_transcript_name=TXLNGY-222;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789721.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001591;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001591;transcript_name=HG003_chrY_T0001591;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001591:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428129	20451200	1000	+	.	source_transcript=ENST00000789729.1;source_transcript_name=TXLNGY-230;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789729.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001592;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001592;gene_name=TXLNGY;ID=HG003_chrY_T0001592;Name=TXLNGY
HG003_chrY	CAT	exon	20428129	20428347	.	+	.	source_transcript=ENST00000789729.1;source_transcript_name=TXLNGY-230;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001592;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001592;transcript_name=HG003_chrY_T0001592;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001592:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000789729.1;source_transcript_name=TXLNGY-230;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001592;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001592;transcript_name=HG003_chrY_T0001592;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001592:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789729.1;source_transcript_name=TXLNGY-230;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001592;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001592;transcript_name=HG003_chrY_T0001592;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001592:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450859	.	+	.	source_transcript=ENST00000789729.1;source_transcript_name=TXLNGY-230;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001592;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001592;transcript_name=HG003_chrY_T0001592;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001592:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451200	.	+	.	source_transcript=ENST00000789729.1;source_transcript_name=TXLNGY-230;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001592;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001592;transcript_name=HG003_chrY_T0001592;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001592:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428129	20451196	1000	+	.	source_transcript=ENST00000789730.1;source_transcript_name=TXLNGY-231;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789730.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001593;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001593;gene_name=TXLNGY;ID=HG003_chrY_T0001593;Name=TXLNGY
HG003_chrY	CAT	exon	20428129	20428347	.	+	.	source_transcript=ENST00000789730.1;source_transcript_name=TXLNGY-231;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001593;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001593;transcript_name=HG003_chrY_T0001593;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001593:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447997	.	+	.	source_transcript=ENST00000789730.1;source_transcript_name=TXLNGY-231;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001593;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001593;transcript_name=HG003_chrY_T0001593;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001593:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447998	20448284	.	+	.	source_transcript=ENST00000789730.1;source_transcript_name=TXLNGY-231;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001593;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001593;transcript_name=HG003_chrY_T0001593;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001593:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449319	.	+	.	source_transcript=ENST00000789730.1;source_transcript_name=TXLNGY-231;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001593;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001593;transcript_name=HG003_chrY_T0001593;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001593:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449320	20449427	.	+	.	source_transcript=ENST00000789730.1;source_transcript_name=TXLNGY-231;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001593;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001593;transcript_name=HG003_chrY_T0001593;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001593:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450297	.	+	.	source_transcript=ENST00000789730.1;source_transcript_name=TXLNGY-231;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001593;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001593;transcript_name=HG003_chrY_T0001593;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001593:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789730.1;source_transcript_name=TXLNGY-231;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001593;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001593;transcript_name=HG003_chrY_T0001593;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001593:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000789730.1;source_transcript_name=TXLNGY-231;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001593;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001593;transcript_name=HG003_chrY_T0001593;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001593:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451196	.	+	.	source_transcript=ENST00000789730.1;source_transcript_name=TXLNGY-231;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789730.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789730.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001593;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001593;transcript_name=HG003_chrY_T0001593;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001593:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428132	20454938	1000	+	.	source_transcript=ENST00000789723.1;source_transcript_name=TXLNGY-224;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789723.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001594;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001594;gene_name=TXLNGY;ID=HG003_chrY_T0001594;Name=TXLNGY
HG003_chrY	CAT	exon	20428132	20428259	.	+	.	source_transcript=ENST00000789723.1;source_transcript_name=TXLNGY-224;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001594;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001594;transcript_name=HG003_chrY_T0001594;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001594:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000789723.1;source_transcript_name=TXLNGY-224;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001594;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001594;transcript_name=HG003_chrY_T0001594;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001594:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448169	.	+	.	source_transcript=ENST00000789723.1;source_transcript_name=TXLNGY-224;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001594;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001594;transcript_name=HG003_chrY_T0001594;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001594:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448170	20450297	.	+	.	source_transcript=ENST00000789723.1;source_transcript_name=TXLNGY-224;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001594;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001594;transcript_name=HG003_chrY_T0001594;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001594:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789723.1;source_transcript_name=TXLNGY-224;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001594;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001594;transcript_name=HG003_chrY_T0001594;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001594:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20452556	.	+	.	source_transcript=ENST00000789723.1;source_transcript_name=TXLNGY-224;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001594;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001594;transcript_name=HG003_chrY_T0001594;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001594:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20452557	20452736	.	+	.	source_transcript=ENST00000789723.1;source_transcript_name=TXLNGY-224;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001594;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001594;transcript_name=HG003_chrY_T0001594;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001594:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=ENST00000789723.1;source_transcript_name=TXLNGY-224;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001594;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001594;transcript_name=HG003_chrY_T0001594;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001594:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454938	.	+	.	source_transcript=ENST00000789723.1;source_transcript_name=TXLNGY-224;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789723.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001594;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001594;transcript_name=HG003_chrY_T0001594;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001594:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428133	20451200	1000	+	.	source_transcript=ENST00000789731.1;source_transcript_name=TXLNGY-232;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789731.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001595;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001595;gene_name=TXLNGY;ID=HG003_chrY_T0001595;Name=TXLNGY
HG003_chrY	CAT	exon	20428133	20428259	.	+	.	source_transcript=ENST00000789731.1;source_transcript_name=TXLNGY-232;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001595;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001595;transcript_name=HG003_chrY_T0001595;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001595:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000789731.1;source_transcript_name=TXLNGY-232;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001595;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001595;transcript_name=HG003_chrY_T0001595;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001595:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789731.1;source_transcript_name=TXLNGY-232;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001595;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001595;transcript_name=HG003_chrY_T0001595;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001595:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000789731.1;source_transcript_name=TXLNGY-232;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001595;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001595;transcript_name=HG003_chrY_T0001595;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001595:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20449188	.	+	.	source_transcript=ENST00000789731.1;source_transcript_name=TXLNGY-232;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001595;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001595;transcript_name=HG003_chrY_T0001595;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001595:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449189	20449319	.	+	.	source_transcript=ENST00000789731.1;source_transcript_name=TXLNGY-232;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001595;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001595;transcript_name=HG003_chrY_T0001595;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001595:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449320	20449427	.	+	.	source_transcript=ENST00000789731.1;source_transcript_name=TXLNGY-232;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001595;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001595;transcript_name=HG003_chrY_T0001595;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001595:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450297	.	+	.	source_transcript=ENST00000789731.1;source_transcript_name=TXLNGY-232;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001595;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001595;transcript_name=HG003_chrY_T0001595;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001595:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789731.1;source_transcript_name=TXLNGY-232;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001595;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001595;transcript_name=HG003_chrY_T0001595;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001595:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000789731.1;source_transcript_name=TXLNGY-232;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001595;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001595;transcript_name=HG003_chrY_T0001595;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001595:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451200	.	+	.	source_transcript=ENST00000789731.1;source_transcript_name=TXLNGY-232;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789731.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789731.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001595;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001595;transcript_name=HG003_chrY_T0001595;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001595:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428135	20448935	1000	+	.	source_transcript=ENST00000789744.1;source_transcript_name=TXLNGY-245;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789744.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789744.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001596;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001596;gene_name=TXLNGY;ID=HG003_chrY_T0001596;Name=TXLNGY
HG003_chrY	CAT	exon	20428135	20428347	.	+	.	source_transcript=ENST00000789744.1;source_transcript_name=TXLNGY-245;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789744.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789744.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001596;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001596;transcript_name=HG003_chrY_T0001596;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001596:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447997	.	+	.	source_transcript=ENST00000789744.1;source_transcript_name=TXLNGY-245;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789744.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789744.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001596;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001596;transcript_name=HG003_chrY_T0001596;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001596:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447998	20448935	.	+	.	source_transcript=ENST00000789744.1;source_transcript_name=TXLNGY-245;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789744.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789744.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001596;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001596;transcript_name=HG003_chrY_T0001596;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001596:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428140	20454932	1000	+	.	source_transcript=ENST00000587095.2;source_transcript_name=TXLNGY-210;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000587095.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000587095.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001597;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001597;gene_name=TXLNGY;ID=HG003_chrY_T0001597;Name=TXLNGY
HG003_chrY	CAT	exon	20428140	20428259	.	+	.	source_transcript=ENST00000587095.2;source_transcript_name=TXLNGY-210;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000587095.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000587095.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001597;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001597;transcript_name=HG003_chrY_T0001597;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001597:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000587095.2;source_transcript_name=TXLNGY-210;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000587095.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000587095.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001597;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001597;transcript_name=HG003_chrY_T0001597;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001597:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000587095.2;source_transcript_name=TXLNGY-210;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000587095.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000587095.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001597;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001597;transcript_name=HG003_chrY_T0001597;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001597:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000587095.2;source_transcript_name=TXLNGY-210;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000587095.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000587095.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001597;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001597;transcript_name=HG003_chrY_T0001597;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001597:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20449188	.	+	.	source_transcript=ENST00000587095.2;source_transcript_name=TXLNGY-210;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000587095.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000587095.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001597;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001597;transcript_name=HG003_chrY_T0001597;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001597:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449189	20449319	.	+	.	source_transcript=ENST00000587095.2;source_transcript_name=TXLNGY-210;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000587095.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000587095.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001597;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001597;transcript_name=HG003_chrY_T0001597;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001597:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449320	20449427	.	+	.	source_transcript=ENST00000587095.2;source_transcript_name=TXLNGY-210;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000587095.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000587095.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001597;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001597;transcript_name=HG003_chrY_T0001597;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001597:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450297	.	+	.	source_transcript=ENST00000587095.2;source_transcript_name=TXLNGY-210;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000587095.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000587095.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001597;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001597;transcript_name=HG003_chrY_T0001597;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001597:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000587095.2;source_transcript_name=TXLNGY-210;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000587095.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000587095.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001597;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001597;transcript_name=HG003_chrY_T0001597;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001597:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20454175	.	+	.	source_transcript=ENST00000587095.2;source_transcript_name=TXLNGY-210;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000587095.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000587095.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001597;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001597;transcript_name=HG003_chrY_T0001597;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001597:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454932	.	+	.	source_transcript=ENST00000587095.2;source_transcript_name=TXLNGY-210;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000587095.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000587095.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001597;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001597;transcript_name=HG003_chrY_T0001597;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001597:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428143	20448935	1000	+	.	source_transcript=ENST00000789745.1;source_transcript_name=TXLNGY-246;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789745.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789745.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001598;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001598;gene_name=TXLNGY;ID=HG003_chrY_T0001598;Name=TXLNGY
HG003_chrY	CAT	exon	20428143	20428347	.	+	.	source_transcript=ENST00000789745.1;source_transcript_name=TXLNGY-246;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789745.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789745.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001598;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001598;transcript_name=HG003_chrY_T0001598;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001598:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20437481	.	+	.	source_transcript=ENST00000789745.1;source_transcript_name=TXLNGY-246;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789745.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789745.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001598;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001598;transcript_name=HG003_chrY_T0001598;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001598:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20437482	20437599	.	+	.	source_transcript=ENST00000789745.1;source_transcript_name=TXLNGY-246;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789745.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789745.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001598;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001598;transcript_name=HG003_chrY_T0001598;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001598:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20437600	20447986	.	+	.	source_transcript=ENST00000789745.1;source_transcript_name=TXLNGY-246;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789745.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789745.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001598;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001598;transcript_name=HG003_chrY_T0001598;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001598:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448935	.	+	.	source_transcript=ENST00000789745.1;source_transcript_name=TXLNGY-246;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789745.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789745.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001598;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001598;transcript_name=HG003_chrY_T0001598;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001598:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428143	20454935	1000	+	.	source_transcript=ENST00000789724.1;source_transcript_name=TXLNGY-225;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789724.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001599;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001599;gene_name=TXLNGY;ID=HG003_chrY_T0001599;Name=TXLNGY
HG003_chrY	CAT	exon	20428143	20428259	.	+	.	source_transcript=ENST00000789724.1;source_transcript_name=TXLNGY-225;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789724.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001599;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001599;transcript_name=HG003_chrY_T0001599;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001599:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000789724.1;source_transcript_name=TXLNGY-225;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789724.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001599;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001599;transcript_name=HG003_chrY_T0001599;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001599:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789724.1;source_transcript_name=TXLNGY-225;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789724.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001599;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001599;transcript_name=HG003_chrY_T0001599;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001599:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450297	.	+	.	source_transcript=ENST00000789724.1;source_transcript_name=TXLNGY-225;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789724.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001599;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001599;transcript_name=HG003_chrY_T0001599;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001599:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789724.1;source_transcript_name=TXLNGY-225;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789724.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001599;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001599;transcript_name=HG003_chrY_T0001599;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001599:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20452556	.	+	.	source_transcript=ENST00000789724.1;source_transcript_name=TXLNGY-225;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789724.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001599;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001599;transcript_name=HG003_chrY_T0001599;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001599:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20452557	20452736	.	+	.	source_transcript=ENST00000789724.1;source_transcript_name=TXLNGY-225;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789724.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001599;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001599;transcript_name=HG003_chrY_T0001599;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001599:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=ENST00000789724.1;source_transcript_name=TXLNGY-225;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789724.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001599;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001599;transcript_name=HG003_chrY_T0001599;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001599:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454935	.	+	.	source_transcript=ENST00000789724.1;source_transcript_name=TXLNGY-225;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789724.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001599;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001599;transcript_name=HG003_chrY_T0001599;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001599:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428145	20451200	1000	+	.	source_transcript=ENST00000789732.1;source_transcript_name=TXLNGY-233;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789732.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001600;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001600;gene_name=TXLNGY;ID=HG003_chrY_T0001600;Name=TXLNGY
HG003_chrY	CAT	exon	20428145	20428259	.	+	.	source_transcript=ENST00000789732.1;source_transcript_name=TXLNGY-233;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001600;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001600;transcript_name=HG003_chrY_T0001600;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001600:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000789732.1;source_transcript_name=TXLNGY-233;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001600;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001600;transcript_name=HG003_chrY_T0001600;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001600:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789732.1;source_transcript_name=TXLNGY-233;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001600;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001600;transcript_name=HG003_chrY_T0001600;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001600:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000789732.1;source_transcript_name=TXLNGY-233;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001600;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001600;transcript_name=HG003_chrY_T0001600;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001600:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20450389	.	+	.	source_transcript=ENST00000789732.1;source_transcript_name=TXLNGY-233;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001600;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001600;transcript_name=HG003_chrY_T0001600;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001600:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000789732.1;source_transcript_name=TXLNGY-233;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001600;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001600;transcript_name=HG003_chrY_T0001600;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001600:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451200	.	+	.	source_transcript=ENST00000789732.1;source_transcript_name=TXLNGY-233;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789732.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789732.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001600;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001600;transcript_name=HG003_chrY_T0001600;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001600:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428149	20451200	1000	+	.	source_transcript=ENST00000789733.1;source_transcript_name=TXLNGY-234;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789733.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001601;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001601;gene_name=TXLNGY;ID=HG003_chrY_T0001601;Name=TXLNGY
HG003_chrY	CAT	exon	20428149	20428259	.	+	.	source_transcript=ENST00000789733.1;source_transcript_name=TXLNGY-234;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789733.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001601;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001601;transcript_name=HG003_chrY_T0001601;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001601:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000789733.1;source_transcript_name=TXLNGY-234;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789733.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001601;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001601;transcript_name=HG003_chrY_T0001601;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001601:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789733.1;source_transcript_name=TXLNGY-234;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789733.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001601;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001601;transcript_name=HG003_chrY_T0001601;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001601:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000789733.1;source_transcript_name=TXLNGY-234;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789733.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001601;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001601;transcript_name=HG003_chrY_T0001601;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001601:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20450166	.	+	.	source_transcript=ENST00000789733.1;source_transcript_name=TXLNGY-234;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789733.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001601;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001601;transcript_name=HG003_chrY_T0001601;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001601:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450167	20450297	.	+	.	source_transcript=ENST00000789733.1;source_transcript_name=TXLNGY-234;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789733.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001601;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001601;transcript_name=HG003_chrY_T0001601;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001601:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789733.1;source_transcript_name=TXLNGY-234;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789733.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001601;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001601;transcript_name=HG003_chrY_T0001601;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001601:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000789733.1;source_transcript_name=TXLNGY-234;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789733.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001601;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001601;transcript_name=HG003_chrY_T0001601;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001601:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451200	.	+	.	source_transcript=ENST00000789733.1;source_transcript_name=TXLNGY-234;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789733.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789733.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001601;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001601;transcript_name=HG003_chrY_T0001601;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001601:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428149	20430218	1000	+	.	source_transcript=ENST00000789748.1;source_transcript_name=TXLNGY-249;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789748.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789748.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001602;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001602;gene_name=TXLNGY;ID=HG003_chrY_T0001602;Name=TXLNGY
HG003_chrY	CAT	exon	20428149	20428347	.	+	.	source_transcript=ENST00000789748.1;source_transcript_name=TXLNGY-249;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789748.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789748.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001602;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001602;transcript_name=HG003_chrY_T0001602;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001602:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20428617	.	+	.	source_transcript=ENST00000789748.1;source_transcript_name=TXLNGY-249;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789748.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789748.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001602;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001602;transcript_name=HG003_chrY_T0001602;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001602:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20428618	20428728	.	+	.	source_transcript=ENST00000789748.1;source_transcript_name=TXLNGY-249;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789748.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789748.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001602;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001602;transcript_name=HG003_chrY_T0001602;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001602:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428729	20430161	.	+	.	source_transcript=ENST00000789748.1;source_transcript_name=TXLNGY-249;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789748.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789748.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001602;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001602;transcript_name=HG003_chrY_T0001602;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001602:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20430162	20430218	.	+	.	source_transcript=ENST00000789748.1;source_transcript_name=TXLNGY-249;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789748.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789748.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001602;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001602;transcript_name=HG003_chrY_T0001602;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001602:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428153	20454943	1000	+	.	source_transcript=ENST00000700762.1;source_transcript_name=TXLNGY-219;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700762.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001603;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001603;gene_name=TXLNGY;ID=HG003_chrY_T0001603;Name=TXLNGY
HG003_chrY	CAT	exon	20428153	20428347	.	+	.	source_transcript=ENST00000700762.1;source_transcript_name=TXLNGY-219;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001603;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001603;transcript_name=HG003_chrY_T0001603;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001603:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000700762.1;source_transcript_name=TXLNGY-219;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001603;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001603;transcript_name=HG003_chrY_T0001603;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001603:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000700762.1;source_transcript_name=TXLNGY-219;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001603;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001603;transcript_name=HG003_chrY_T0001603;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001603:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450297	.	+	.	source_transcript=ENST00000700762.1;source_transcript_name=TXLNGY-219;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001603;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001603;transcript_name=HG003_chrY_T0001603;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001603:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000700762.1;source_transcript_name=TXLNGY-219;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001603;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001603;transcript_name=HG003_chrY_T0001603;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001603:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20452556	.	+	.	source_transcript=ENST00000700762.1;source_transcript_name=TXLNGY-219;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001603;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001603;transcript_name=HG003_chrY_T0001603;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001603:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20452557	20452736	.	+	.	source_transcript=ENST00000700762.1;source_transcript_name=TXLNGY-219;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001603;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001603;transcript_name=HG003_chrY_T0001603;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001603:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=ENST00000700762.1;source_transcript_name=TXLNGY-219;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001603;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001603;transcript_name=HG003_chrY_T0001603;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001603:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454943	.	+	.	source_transcript=ENST00000700762.1;source_transcript_name=TXLNGY-219;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000700762.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000700762.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001603;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001603;transcript_name=HG003_chrY_T0001603;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001603:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428154	20450626	1000	+	.	source_transcript=ENST00000789740.1;source_transcript_name=TXLNGY-241;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789740.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001604;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001604;gene_name=TXLNGY;ID=HG003_chrY_T0001604;Name=TXLNGY
HG003_chrY	CAT	exon	20428154	20428347	.	+	.	source_transcript=ENST00000789740.1;source_transcript_name=TXLNGY-241;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789740.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001604;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001604;transcript_name=HG003_chrY_T0001604;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001604:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20437481	.	+	.	source_transcript=ENST00000789740.1;source_transcript_name=TXLNGY-241;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789740.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001604;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001604;transcript_name=HG003_chrY_T0001604;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001604:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20437482	20437599	.	+	.	source_transcript=ENST00000789740.1;source_transcript_name=TXLNGY-241;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789740.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001604;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001604;transcript_name=HG003_chrY_T0001604;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001604:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20437600	20447986	.	+	.	source_transcript=ENST00000789740.1;source_transcript_name=TXLNGY-241;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789740.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001604;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001604;transcript_name=HG003_chrY_T0001604;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001604:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789740.1;source_transcript_name=TXLNGY-241;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789740.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001604;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001604;transcript_name=HG003_chrY_T0001604;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001604:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000789740.1;source_transcript_name=TXLNGY-241;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789740.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001604;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001604;transcript_name=HG003_chrY_T0001604;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001604:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20450626	.	+	.	source_transcript=ENST00000789740.1;source_transcript_name=TXLNGY-241;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789740.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001604;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001604;transcript_name=HG003_chrY_T0001604;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001604:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428155	20451501	1000	+	.	source_transcript=ENST00000789727.1;source_transcript_name=TXLNGY-228;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789727.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001605;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001605;gene_name=TXLNGY;ID=HG003_chrY_T0001605;Name=TXLNGY
HG003_chrY	CAT	exon	20428155	20428347	.	+	.	source_transcript=ENST00000789727.1;source_transcript_name=TXLNGY-228;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001605;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001605;transcript_name=HG003_chrY_T0001605;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001605:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000789727.1;source_transcript_name=TXLNGY-228;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001605;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001605;transcript_name=HG003_chrY_T0001605;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001605:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789727.1;source_transcript_name=TXLNGY-228;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001605;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001605;transcript_name=HG003_chrY_T0001605;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001605:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450297	.	+	.	source_transcript=ENST00000789727.1;source_transcript_name=TXLNGY-228;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001605;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001605;transcript_name=HG003_chrY_T0001605;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001605:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789727.1;source_transcript_name=TXLNGY-228;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001605;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001605;transcript_name=HG003_chrY_T0001605;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001605:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20451386	.	+	.	source_transcript=ENST00000789727.1;source_transcript_name=TXLNGY-228;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001605;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001605;transcript_name=HG003_chrY_T0001605;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001605:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20451387	20451501	.	+	.	source_transcript=ENST00000789727.1;source_transcript_name=TXLNGY-228;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789727.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789727.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001605;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001605;transcript_name=HG003_chrY_T0001605;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001605:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428157	20454938	1000	+	.	source_transcript=ENST00000789725.1;source_transcript_name=TXLNGY-226;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789725.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001606;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001606;gene_name=TXLNGY;ID=HG003_chrY_T0001606;Name=TXLNGY
HG003_chrY	CAT	exon	20428157	20428347	.	+	.	source_transcript=ENST00000789725.1;source_transcript_name=TXLNGY-226;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001606;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001606;transcript_name=HG003_chrY_T0001606;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001606:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000789725.1;source_transcript_name=TXLNGY-226;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001606;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001606;transcript_name=HG003_chrY_T0001606;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001606:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789725.1;source_transcript_name=TXLNGY-226;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001606;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001606;transcript_name=HG003_chrY_T0001606;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001606:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20454175	.	+	.	source_transcript=ENST00000789725.1;source_transcript_name=TXLNGY-226;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001606;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001606;transcript_name=HG003_chrY_T0001606;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001606:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454938	.	+	.	source_transcript=ENST00000789725.1;source_transcript_name=TXLNGY-226;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789725.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001606;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001606;transcript_name=HG003_chrY_T0001606;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001606:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428171	20451067	1000	+	.	source_transcript=ENST00000789735.1;source_transcript_name=TXLNGY-236;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789735.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001608;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001608;gene_name=TXLNGY;ID=HG003_chrY_T0001608;Name=TXLNGY
HG003_chrY	CAT	exon	20428171	20428347	.	+	.	source_transcript=ENST00000789735.1;source_transcript_name=TXLNGY-236;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789735.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001608;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001608;transcript_name=HG003_chrY_T0001608;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001608:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428348	20447986	.	+	.	source_transcript=ENST00000789735.1;source_transcript_name=TXLNGY-236;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789735.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001608;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001608;transcript_name=HG003_chrY_T0001608;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001608:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789735.1;source_transcript_name=TXLNGY-236;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789735.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001608;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001608;transcript_name=HG003_chrY_T0001608;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001608:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000789735.1;source_transcript_name=TXLNGY-236;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789735.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001608;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001608;transcript_name=HG003_chrY_T0001608;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001608:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20449188	.	+	.	source_transcript=ENST00000789735.1;source_transcript_name=TXLNGY-236;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789735.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001608;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001608;transcript_name=HG003_chrY_T0001608;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001608:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449189	20450297	.	+	.	source_transcript=ENST00000789735.1;source_transcript_name=TXLNGY-236;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789735.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001608;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001608;transcript_name=HG003_chrY_T0001608;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001608:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789735.1;source_transcript_name=TXLNGY-236;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789735.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001608;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001608;transcript_name=HG003_chrY_T0001608;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001608:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000789735.1;source_transcript_name=TXLNGY-236;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789735.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001608;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001608;transcript_name=HG003_chrY_T0001608;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001608:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451067	.	+	.	source_transcript=ENST00000789735.1;source_transcript_name=TXLNGY-236;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789735.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789735.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001608;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001608;transcript_name=HG003_chrY_T0001608;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001608:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428363	20451067	1000	+	.	source_transcript=ENST00000789736.1;source_transcript_name=TXLNGY-237;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789736.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001609;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001609;gene_name=TXLNGY;ID=HG003_chrY_T0001609;Name=TXLNGY
HG003_chrY	CAT	exon	20428363	20428728	.	+	.	source_transcript=ENST00000789736.1;source_transcript_name=TXLNGY-237;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789736.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001609;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001609;transcript_name=HG003_chrY_T0001609;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001609:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428729	20447986	.	+	.	source_transcript=ENST00000789736.1;source_transcript_name=TXLNGY-237;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789736.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001609;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001609;transcript_name=HG003_chrY_T0001609;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001609:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789736.1;source_transcript_name=TXLNGY-237;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789736.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001609;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001609;transcript_name=HG003_chrY_T0001609;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001609:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450859	.	+	.	source_transcript=ENST00000789736.1;source_transcript_name=TXLNGY-237;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789736.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001609;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001609;transcript_name=HG003_chrY_T0001609;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001609:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451067	.	+	.	source_transcript=ENST00000789736.1;source_transcript_name=TXLNGY-237;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789736.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789736.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001609;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001609;transcript_name=HG003_chrY_T0001609;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001609:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428564	20450626	1000	+	.	source_transcript=ENST00000538014.2;source_transcript_name=TXLNGY-208;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000538014.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000538014.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001610;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001610;gene_name=TXLNGY;ID=HG003_chrY_T0001610;Name=TXLNGY
HG003_chrY	CAT	exon	20428564	20428728	.	+	.	source_transcript=ENST00000538014.2;source_transcript_name=TXLNGY-208;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000538014.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000538014.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001610;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001610;transcript_name=HG003_chrY_T0001610;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001610:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428729	20430161	.	+	.	source_transcript=ENST00000538014.2;source_transcript_name=TXLNGY-208;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000538014.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000538014.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001610;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001610;transcript_name=HG003_chrY_T0001610;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001610:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20430162	20430236	.	+	.	source_transcript=ENST00000538014.2;source_transcript_name=TXLNGY-208;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000538014.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000538014.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001610;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001610;transcript_name=HG003_chrY_T0001610;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001610:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20430237	20447986	.	+	.	source_transcript=ENST00000538014.2;source_transcript_name=TXLNGY-208;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000538014.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000538014.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001610;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001610;transcript_name=HG003_chrY_T0001610;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001610:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000538014.2;source_transcript_name=TXLNGY-208;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000538014.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000538014.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001610;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001610;transcript_name=HG003_chrY_T0001610;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001610:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000538014.2;source_transcript_name=TXLNGY-208;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000538014.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000538014.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001610;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001610;transcript_name=HG003_chrY_T0001610;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001610:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20450626	.	+	.	source_transcript=ENST00000538014.2;source_transcript_name=TXLNGY-208;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000538014.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000538014.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001610;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001610;transcript_name=HG003_chrY_T0001610;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001610:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428616	20451200	1000	+	.	source_transcript=ENST00000789737.1;source_transcript_name=TXLNGY-238;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789737.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001611;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001611;gene_name=TXLNGY;ID=HG003_chrY_T0001611;Name=TXLNGY
HG003_chrY	CAT	exon	20428616	20428728	.	+	.	source_transcript=ENST00000789737.1;source_transcript_name=TXLNGY-238;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789737.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001611;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001611;transcript_name=HG003_chrY_T0001611;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001611:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428729	20437481	.	+	.	source_transcript=ENST00000789737.1;source_transcript_name=TXLNGY-238;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789737.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001611;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001611;transcript_name=HG003_chrY_T0001611;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001611:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20437482	20437599	.	+	.	source_transcript=ENST00000789737.1;source_transcript_name=TXLNGY-238;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789737.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001611;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001611;transcript_name=HG003_chrY_T0001611;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001611:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20437600	20447986	.	+	.	source_transcript=ENST00000789737.1;source_transcript_name=TXLNGY-238;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789737.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001611;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001611;transcript_name=HG003_chrY_T0001611;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001611:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789737.1;source_transcript_name=TXLNGY-238;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789737.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001611;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001611;transcript_name=HG003_chrY_T0001611;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001611:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000789737.1;source_transcript_name=TXLNGY-238;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789737.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001611;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001611;transcript_name=HG003_chrY_T0001611;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001611:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20450166	.	+	.	source_transcript=ENST00000789737.1;source_transcript_name=TXLNGY-238;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789737.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001611;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001611;transcript_name=HG003_chrY_T0001611;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001611:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450167	20450297	.	+	.	source_transcript=ENST00000789737.1;source_transcript_name=TXLNGY-238;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789737.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001611;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001611;transcript_name=HG003_chrY_T0001611;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001611:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789737.1;source_transcript_name=TXLNGY-238;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789737.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001611;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001611;transcript_name=HG003_chrY_T0001611;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001611:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000789737.1;source_transcript_name=TXLNGY-238;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789737.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001611;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001611;transcript_name=HG003_chrY_T0001611;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001611:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451200	.	+	.	source_transcript=ENST00000789737.1;source_transcript_name=TXLNGY-238;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789737.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001611;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001611;transcript_name=HG003_chrY_T0001611;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001611:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428616	20454199	1000	+	.	source_transcript=ENST00000789726.1;source_transcript_name=TXLNGY-227;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789726.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001612;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001612;gene_name=TXLNGY;ID=HG003_chrY_T0001612;Name=TXLNGY
HG003_chrY	CAT	exon	20428616	20428728	.	+	.	source_transcript=ENST00000789726.1;source_transcript_name=TXLNGY-227;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001612;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001612;transcript_name=HG003_chrY_T0001612;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001612:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428729	20447986	.	+	.	source_transcript=ENST00000789726.1;source_transcript_name=TXLNGY-227;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001612;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001612;transcript_name=HG003_chrY_T0001612;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001612:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789726.1;source_transcript_name=TXLNGY-227;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001612;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001612;transcript_name=HG003_chrY_T0001612;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001612:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450297	.	+	.	source_transcript=ENST00000789726.1;source_transcript_name=TXLNGY-227;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001612;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001612;transcript_name=HG003_chrY_T0001612;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001612:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789726.1;source_transcript_name=TXLNGY-227;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001612;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001612;transcript_name=HG003_chrY_T0001612;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001612:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20452556	.	+	.	source_transcript=ENST00000789726.1;source_transcript_name=TXLNGY-227;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001612;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001612;transcript_name=HG003_chrY_T0001612;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001612:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20452557	20452736	.	+	.	source_transcript=ENST00000789726.1;source_transcript_name=TXLNGY-227;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001612;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001612;transcript_name=HG003_chrY_T0001612;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001612:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=ENST00000789726.1;source_transcript_name=TXLNGY-227;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001612;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001612;transcript_name=HG003_chrY_T0001612;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001612:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454199	.	+	.	source_transcript=ENST00000789726.1;source_transcript_name=TXLNGY-227;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001612;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001612;transcript_name=HG003_chrY_T0001612;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001612:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428620	20451196	1000	+	.	source_transcript=ENST00000789738.1;source_transcript_name=TXLNGY-239;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789738.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001613;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001613;gene_name=TXLNGY;ID=HG003_chrY_T0001613;Name=TXLNGY
HG003_chrY	CAT	exon	20428620	20428728	.	+	.	source_transcript=ENST00000789738.1;source_transcript_name=TXLNGY-239;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001613;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001613;transcript_name=HG003_chrY_T0001613;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001613:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428729	20447986	.	+	.	source_transcript=ENST00000789738.1;source_transcript_name=TXLNGY-239;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001613;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001613;transcript_name=HG003_chrY_T0001613;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001613:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789738.1;source_transcript_name=TXLNGY-239;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001613;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001613;transcript_name=HG003_chrY_T0001613;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001613:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000789738.1;source_transcript_name=TXLNGY-239;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001613;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001613;transcript_name=HG003_chrY_T0001613;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001613:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20449188	.	+	.	source_transcript=ENST00000789738.1;source_transcript_name=TXLNGY-239;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001613;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001613;transcript_name=HG003_chrY_T0001613;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001613:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449189	20449319	.	+	.	source_transcript=ENST00000789738.1;source_transcript_name=TXLNGY-239;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001613;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001613;transcript_name=HG003_chrY_T0001613;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001613:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449320	20449427	.	+	.	source_transcript=ENST00000789738.1;source_transcript_name=TXLNGY-239;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001613;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001613;transcript_name=HG003_chrY_T0001613;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001613:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450297	.	+	.	source_transcript=ENST00000789738.1;source_transcript_name=TXLNGY-239;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001613;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001613;transcript_name=HG003_chrY_T0001613;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001613:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789738.1;source_transcript_name=TXLNGY-239;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001613;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001613;transcript_name=HG003_chrY_T0001613;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001613:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000789738.1;source_transcript_name=TXLNGY-239;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001613;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001613;transcript_name=HG003_chrY_T0001613;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001613:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20451196	.	+	.	source_transcript=ENST00000789738.1;source_transcript_name=TXLNGY-239;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001613;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001613;transcript_name=HG003_chrY_T0001613;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001613:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428622	20448278	1000	+	.	source_transcript=ENST00000789746.1;source_transcript_name=TXLNGY-247;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789746.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789746.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001614;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001614;gene_name=TXLNGY;ID=HG003_chrY_T0001614;Name=TXLNGY
HG003_chrY	CAT	exon	20428622	20428728	.	+	.	source_transcript=ENST00000789746.1;source_transcript_name=TXLNGY-247;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789746.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789746.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001614;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001614;transcript_name=HG003_chrY_T0001614;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001614:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428729	20429539	.	+	.	source_transcript=ENST00000789746.1;source_transcript_name=TXLNGY-247;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789746.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789746.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001614;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001614;transcript_name=HG003_chrY_T0001614;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001614:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20429540	20429696	.	+	.	source_transcript=ENST00000789746.1;source_transcript_name=TXLNGY-247;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789746.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789746.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001614;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001614;transcript_name=HG003_chrY_T0001614;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001614:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20429697	20447986	.	+	.	source_transcript=ENST00000789746.1;source_transcript_name=TXLNGY-247;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789746.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789746.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001614;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001614;transcript_name=HG003_chrY_T0001614;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001614:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448278	.	+	.	source_transcript=ENST00000789746.1;source_transcript_name=TXLNGY-247;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789746.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789746.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001614;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001614;transcript_name=HG003_chrY_T0001614;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001614:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20428635	20450981	1000	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=HG003_chrY_T0001615;Name=TXLNGY
HG003_chrY	CAT	exon	20428635	20428728	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001615:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428729	20429650	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001615:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20429651	20429696	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001615:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20429697	20447986	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001615:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001615:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20449146	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001615:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449147	20449188	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001615:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449189	20449319	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001615:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20449320	20449427	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001615:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450297	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001615:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001615:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20450859	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001615:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450860	20450981	.	+	.	source_transcript=ENST00000789741.1;source_transcript_name=TXLNGY-242;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001615;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001615;transcript_name=HG003_chrY_T0001615;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001615:6;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20449386	20454379	1000	+	.	source_transcript=ENST00000585549.5;source_transcript_name=TXLNGY-209;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000585549.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000585549.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001616;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001616;gene_name=TXLNGY;ID=HG003_chrY_T0001616;Name=TXLNGY
HG003_chrY	CAT	exon	20449386	20449427	.	+	.	source_transcript=ENST00000585549.5;source_transcript_name=TXLNGY-209;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000585549.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000585549.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001616;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001616;transcript_name=HG003_chrY_T0001616;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001616:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20449428	20450297	.	+	.	source_transcript=ENST00000585549.5;source_transcript_name=TXLNGY-209;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000585549.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000585549.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001616;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001616;transcript_name=HG003_chrY_T0001616;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001616:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000585549.5;source_transcript_name=TXLNGY-209;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000585549.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000585549.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001616;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001616;transcript_name=HG003_chrY_T0001616;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001616:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20452696	.	+	.	source_transcript=ENST00000585549.5;source_transcript_name=TXLNGY-209;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000585549.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000585549.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001616;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001616;transcript_name=HG003_chrY_T0001616;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001616:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20452697	20452736	.	+	.	source_transcript=ENST00000585549.5;source_transcript_name=TXLNGY-209;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000585549.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000585549.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001616;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001616;transcript_name=HG003_chrY_T0001616;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001616:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=ENST00000585549.5;source_transcript_name=TXLNGY-209;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000585549.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000585549.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001616;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001616;transcript_name=HG003_chrY_T0001616;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001616:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454379	.	+	.	source_transcript=ENST00000585549.5;source_transcript_name=TXLNGY-209;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000585549.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000585549.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001616;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001616;transcript_name=HG003_chrY_T0001616;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001616:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20451552	20454938	1000	+	.	source_transcript=ENST00000789747.1;source_transcript_name=TXLNGY-248;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789747.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789747.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001617;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001617;gene_name=TXLNGY;ID=HG003_chrY_T0001617;Name=TXLNGY
HG003_chrY	CAT	exon	20451552	20452736	.	+	.	source_transcript=ENST00000789747.1;source_transcript_name=TXLNGY-248;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789747.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789747.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001617;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001617;transcript_name=HG003_chrY_T0001617;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001617:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=ENST00000789747.1;source_transcript_name=TXLNGY-248;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789747.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789747.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001617;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001617;transcript_name=HG003_chrY_T0001617;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001617:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454938	.	+	.	source_transcript=ENST00000789747.1;source_transcript_name=TXLNGY-248;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000789747.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000789747.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001617;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001617;transcript_name=HG003_chrY_T0001617;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001617:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20453227	20467053	1000	+	.	source_transcript=ENST00000253320.8;source_transcript_name=TXLNGY-202;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000253320.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000253320.8;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001618;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001618;gene_name=TXLNGY;ID=HG003_chrY_T0001618;Name=TXLNGY
HG003_chrY	CAT	exon	20453227	20453591	.	+	.	source_transcript=ENST00000253320.8;source_transcript_name=TXLNGY-202;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000253320.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000253320.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001618;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001618;transcript_name=HG003_chrY_T0001618;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001618:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20453592	20454175	.	+	.	source_transcript=ENST00000253320.8;source_transcript_name=TXLNGY-202;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000253320.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000253320.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001618;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001618;transcript_name=HG003_chrY_T0001618;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001618:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20458446	.	+	.	source_transcript=ENST00000253320.8;source_transcript_name=TXLNGY-202;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000253320.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000253320.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001618;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001618;transcript_name=HG003_chrY_T0001618;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001618:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20458447	20460519	.	+	.	source_transcript=ENST00000253320.8;source_transcript_name=TXLNGY-202;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000253320.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000253320.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001618;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001618;transcript_name=HG003_chrY_T0001618;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001618:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20460520	20460612	.	+	.	source_transcript=ENST00000253320.8;source_transcript_name=TXLNGY-202;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000253320.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000253320.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001618;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001618;transcript_name=HG003_chrY_T0001618;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001618:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20460613	20462996	.	+	.	source_transcript=ENST00000253320.8;source_transcript_name=TXLNGY-202;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000253320.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000253320.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001618;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001618;transcript_name=HG003_chrY_T0001618;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001618:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20462997	20463092	.	+	.	source_transcript=ENST00000253320.8;source_transcript_name=TXLNGY-202;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000253320.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000253320.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001618;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001618;transcript_name=HG003_chrY_T0001618;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001618:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20463093	20464577	.	+	.	source_transcript=ENST00000253320.8;source_transcript_name=TXLNGY-202;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000253320.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000253320.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001618;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001618;transcript_name=HG003_chrY_T0001618;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001618:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20464578	20467053	.	+	.	source_transcript=ENST00000253320.8;source_transcript_name=TXLNGY-202;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000253320.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000253320.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001618;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001618;transcript_name=HG003_chrY_T0001618;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001618:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20453865	20454938	1000	+	.	source_transcript=ENST00000593000.1;source_transcript_name=TXLNGY-214;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000593000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000593000.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001619;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001619;gene_name=TXLNGY;ID=HG003_chrY_T0001619;Name=TXLNGY
HG003_chrY	CAT	exon	20453865	20454938	.	+	.	source_transcript=ENST00000593000.1;source_transcript_name=TXLNGY-214;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000593000.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000593000.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001619;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001619;transcript_name=HG003_chrY_T0001619;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001619:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20458138	20464832	1000	+	.	source_transcript=ENST00000592697.1;source_transcript_name=TXLNGY-213;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000592697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000592697.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001620;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_G0000536;transcript_name=HG003_chrY_T0001620;gene_name=TXLNGY;ID=HG003_chrY_T0001620;Name=TXLNGY
HG003_chrY	CAT	exon	20458138	20458446	.	+	.	source_transcript=ENST00000592697.1;source_transcript_name=TXLNGY-213;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000592697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000592697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001620;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001620;transcript_name=HG003_chrY_T0001620;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001620:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20458447	20459332	.	+	.	source_transcript=ENST00000592697.1;source_transcript_name=TXLNGY-213;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000592697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000592697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001620;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001620;transcript_name=HG003_chrY_T0001620;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001620:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20459333	20459420	.	+	.	source_transcript=ENST00000592697.1;source_transcript_name=TXLNGY-213;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000592697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000592697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001620;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001620;transcript_name=HG003_chrY_T0001620;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001620:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20459421	20460519	.	+	.	source_transcript=ENST00000592697.1;source_transcript_name=TXLNGY-213;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000592697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000592697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001620;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001620;transcript_name=HG003_chrY_T0001620;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001620:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20460520	20460612	.	+	.	source_transcript=ENST00000592697.1;source_transcript_name=TXLNGY-213;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000592697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000592697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001620;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001620;transcript_name=HG003_chrY_T0001620;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001620:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20460613	20462996	.	+	.	source_transcript=ENST00000592697.1;source_transcript_name=TXLNGY-213;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000592697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000592697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001620;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001620;transcript_name=HG003_chrY_T0001620;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001620:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20462997	20463092	.	+	.	source_transcript=ENST00000592697.1;source_transcript_name=TXLNGY-213;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000592697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000592697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001620;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001620;transcript_name=HG003_chrY_T0001620;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001620:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20463093	20464577	.	+	.	source_transcript=ENST00000592697.1;source_transcript_name=TXLNGY-213;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000592697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000592697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001620;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001620;transcript_name=HG003_chrY_T0001620;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001620:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20464578	20464832	.	+	.	source_transcript=ENST00000592697.1;source_transcript_name=TXLNGY-213;source_gene=ENSG00000291033.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291033.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000592697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000592697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001620;gene_id=HG003_chrY_G0000536;Parent=HG003_chrY_T0001620;transcript_name=HG003_chrY_T0001620;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001620:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20428159	20464901	.	+	.	source_gene_common_name=TXLNGY;source_gene=ENSG00000131002.15;gene_id=HG003_chrY_G0000537;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TXLNGY;gene_sources=liftoff;ID=HG003_chrY_G0000537;Name=TXLNGY
HG003_chrY	CAT	transcript	20428159	20464901	1000	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_G0000537;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=HG003_chrY_T0001607;Name=TXLNGY
HG003_chrY	CAT	exon	20428159	20428259	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001607:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20428260	20447986	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001607:0;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20447987	20448284	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001607:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20448285	20450297	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001607:1;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20450298	20450389	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001607:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20450390	20452556	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001607:2;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20452557	20452736	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001607:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20452737	20454175	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001607:3;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20454176	20454370	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001607:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20454371	20456791	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001607:4;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20456792	20456911	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001607:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20456912	20458371	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001607:5;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20458372	20458446	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001607:6;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20458447	20460519	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001607:6;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20460520	20460612	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001607:7;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20460613	20462996	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001607:7;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20462997	20463092	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001607:8;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20463093	20464577	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=intron:HG003_chrY_T0001607:8;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20464578	20464901	.	+	.	source_transcript=ENST00000445715.6;source_transcript_name=TXLNGY-201;source_gene=ENSG00000131002.15;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000131002.15;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445715.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000445715.6;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TXLNGY;transcript_id=HG003_chrY_T0001607;gene_id=HG003_chrY_G0000537;Parent=HG003_chrY_T0001607;transcript_name=HG003_chrY_T0001607;gene_name=TXLNGY;ID=exon:HG003_chrY_T0001607:9;Name=TXLNGY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20458969	20459538	.	+	.	source_gene_common_name=ENSG00000267793;source_gene=ENSG00000267793.1;gene_id=HG003_chrY_G0000538;gene_biotype=transcribed_processed_pseudogene;gene_name=ENSG00000267793;gene_sources=liftoff;ID=HG003_chrY_G0000538;Name=ENSG00000267793
HG003_chrY	CAT	transcript	20458969	20459538	1000	+	.	source_transcript=ENST00000586015.1;source_transcript_name=ENST00000586015;source_gene=ENSG00000267793.1;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000267793.1;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000586015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000586015.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000267793;transcript_id=HG003_chrY_T0001621;gene_id=HG003_chrY_G0000538;Parent=HG003_chrY_G0000538;transcript_name=HG003_chrY_T0001621;gene_name=ENSG00000267793;ID=HG003_chrY_T0001621;Name=ENSG00000267793
HG003_chrY	CAT	exon	20458969	20459538	.	+	.	source_transcript=ENST00000586015.1;source_transcript_name=ENST00000586015;source_gene=ENSG00000267793.1;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000267793.1;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000586015.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000586015.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000267793;transcript_id=HG003_chrY_T0001621;gene_id=HG003_chrY_G0000538;Parent=HG003_chrY_T0001621;transcript_name=HG003_chrY_T0001621;gene_name=ENSG00000267793;ID=exon:HG003_chrY_T0001621:0;Name=ENSG00000267793;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20552706	20555371	.	-	.	source_gene_common_name=ENSG00000260197;source_gene=ENSG00000260197.1;alternative_source_transcripts=ENST00000566193.1,ENST00000566193.1;gene_id=HG003_chrY_G0000539;gene_biotype=lncRNA;gene_name=ENSG00000260197;gene_sources=liftoff;ID=HG003_chrY_G0000539;Name=ENSG00000260197
HG003_chrY	CAT	transcript	20552706	20555371	1000	-	.	source_transcript=ENST00000566193.1;source_transcript_name=ENST00000566193;source_gene=ENSG00000260197.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000260197.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000566193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000566193.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000260197;alternative_source_transcripts=ENST00000566193.1,ENST00000566193.1;transcript_id=HG003_chrY_T0001622;gene_id=HG003_chrY_G0000539;Parent=HG003_chrY_G0000539;transcript_name=HG003_chrY_T0001622;gene_name=ENSG00000260197;ID=HG003_chrY_T0001622;Name=ENSG00000260197
HG003_chrY	CAT	exon	20552706	20555371	.	-	.	source_transcript=ENST00000566193.1;source_transcript_name=ENST00000566193;source_gene=ENSG00000260197.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000260197.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000566193.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000566193.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000260197;alternative_source_transcripts=ENST00000566193.1,ENST00000566193.1;transcript_id=HG003_chrY_T0001622;gene_id=HG003_chrY_G0000539;Parent=HG003_chrY_T0001622;transcript_name=HG003_chrY_T0001622;gene_name=ENSG00000260197;ID=exon:HG003_chrY_T0001622:0;Name=ENSG00000260197;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20564630	20605704	.	-	.	source_gene_common_name=KDM5D;source_gene=ENSG00000012817.16;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;gene_id=HG003_chrY_G0000540;gene_biotype=protein_coding;gene_name=KDM5D;gene_sources=liftoff;ID=HG003_chrY_G0000540;Name=KDM5D
HG003_chrY	CAT	transcript	20564630	20605491	100	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_G0000540;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=HG003_chrY_T0001623;Name=KDM5D
HG003_chrY	CAT	exon	20564630	20567110	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0001623;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569009	20569188	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570574	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570574	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570575	20571140	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602082	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001623:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0001623;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=intron:HG003_chrY_T0001623:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605491	.	-	.	source_transcript=ENST00000317961.9;source_transcript_name=KDM5D-201;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000317961.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000317961.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000317961.9,ENST00000317961.9;transcript_id=HG003_chrY_T0001623;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001623;transcript_name=HG003_chrY_T0001623;gene_name=KDM5D;ID=exon:HG003_chrY_T0001623:26;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20564630	20577460	1000	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_G0000540;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=HG003_chrY_T0001624;Name=KDM5D
HG003_chrY	CAT	exon	20564630	20567110	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=exon:HG003_chrY_T0001624:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=intron:HG003_chrY_T0001624:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567628	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=exon:HG003_chrY_T0001624:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=intron:HG003_chrY_T0001624:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=exon:HG003_chrY_T0001624:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=intron:HG003_chrY_T0001624:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=exon:HG003_chrY_T0001624:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=intron:HG003_chrY_T0001624:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=exon:HG003_chrY_T0001624:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=intron:HG003_chrY_T0001624:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=exon:HG003_chrY_T0001624:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=intron:HG003_chrY_T0001624:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20571025	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=exon:HG003_chrY_T0001624:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571026	20571140	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=intron:HG003_chrY_T0001624:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=exon:HG003_chrY_T0001624:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576348	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=intron:HG003_chrY_T0001624:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576349	20576504	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=exon:HG003_chrY_T0001624:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=intron:HG003_chrY_T0001624:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=exon:HG003_chrY_T0001624:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=intron:HG003_chrY_T0001624:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=exon:HG003_chrY_T0001624:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=intron:HG003_chrY_T0001624:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577460	.	-	.	source_transcript=ENST00000469599.6;source_transcript_name=KDM5D-206;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000469599.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000469599.6;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000469599.6,ENST00000469599.6;transcript_id=HG003_chrY_T0001624;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001624;transcript_name=HG003_chrY_T0001624;gene_name=KDM5D;ID=exon:HG003_chrY_T0001624:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20566182	20605704	100	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_G0000540;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=HG003_chrY_T0001625;Name=KDM5D
HG003_chrY	CAT	exon	20566182	20567110	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0001625;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569009	20569188	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570574	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570574	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570575	20571140	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20584105	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20584106	20584198	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20584106	20584198	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20584199	20592536	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602082	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:26;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001625:26;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0001625;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=intron:HG003_chrY_T0001625:26;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605704	.	-	.	source_transcript=ENST00000541639.5;source_transcript_name=KDM5D-210;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000541639.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000541639.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000541639.5,ENST00000541639.5;transcript_id=HG003_chrY_T0001625;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001625;transcript_name=HG003_chrY_T0001625;gene_name=KDM5D;ID=exon:HG003_chrY_T0001625:27;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20566185	20605526	100	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_G0000540;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=HG003_chrY_T0001626;Name=KDM5D
HG003_chrY	CAT	exon	20566185	20567110	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566760	20567110	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	20566760	20566762	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=stop_codon:HG003_chrY_T0001626;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569009	20569188	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570574	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570574	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570575	20571140	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602499	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001626:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0001626;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=intron:HG003_chrY_T0001626:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605526	.	-	.	source_transcript=ENST00000382806.6;source_transcript_name=KDM5D-202;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382806.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382806.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000382806.6,ENST00000382806.6;transcript_id=HG003_chrY_T0001626;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001626;transcript_name=HG003_chrY_T0001626;gene_name=KDM5D;ID=exon:HG003_chrY_T0001626:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20566190	20583232	1000	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_G0000540;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=HG003_chrY_T0001627;Name=KDM5D
HG003_chrY	CAT	exon	20566190	20567110	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567628	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570574	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570575	20571140	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576876	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576877	20577043	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=intron:HG003_chrY_T0001627:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20583232	.	-	.	source_transcript=ENST00000492117.1;source_transcript_name=KDM5D-209;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000492117.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000492117.1;transcript_score=299.981;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000492117.1,ENST00000492117.1;transcript_id=HG003_chrY_T0001627;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001627;transcript_name=HG003_chrY_T0001627;gene_name=KDM5D;ID=exon:HG003_chrY_T0001627:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20566828	20605688	100	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_G0000540;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=HG003_chrY_T0001628;Name=KDM5D
HG003_chrY	CAT	exon	20566828	20567110	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20566828	20567110	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567111	20567205	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567206	20567405	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567206	20567405	.	-	2	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567406	20567558	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567559	20567628	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567559	20567628	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20567629	20567911	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20567912	20568511	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567912	20568511	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569008	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569009	20569188	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569009	20569188	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569778	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569778	.	-	1	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569779	20570215	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20570216	20570574	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20570216	20570574	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20570575	20571140	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571237	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20571141	20571237	.	-	1	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571238	20576116	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576117	20576264	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576117	20576264	.	-	2	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576265	20576379	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576380	20576504	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576380	20576504	.	-	1	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20576588	20576769	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:11;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577238	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577044	20577238	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577239	20577360	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:12;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577361	20577480	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20577361	20577480	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20577481	20581636	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:13;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581637	20581799	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581637	20581799	.	-	1	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20581800	20581894	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:14;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20581895	20582076	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20581895	20582076	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:15;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:16;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:17;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:18;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:19;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20600292	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:20;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20600293	20600427	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20600293	20600427	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20600428	20602082	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:21;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20603926	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:22;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:23;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001628:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0001628;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=intron:HG003_chrY_T0001628:24;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605688	.	-	.	source_transcript=ENST00000440077.5;source_transcript_name=KDM5D-204;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000440077.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000440077.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000440077.5,ENST00000440077.5;transcript_id=HG003_chrY_T0001628;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001628;transcript_name=HG003_chrY_T0001628;gene_name=KDM5D;ID=exon:HG003_chrY_T0001628:25;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20567947	20569714	100	-	.	source_transcript=ENST00000415360.1;source_transcript_name=KDM5D-203;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415360.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000415360.1,ENST00000415360.1;transcript_id=HG003_chrY_T0001629;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_G0000540;transcript_name=HG003_chrY_T0001629;gene_name=KDM5D;ID=HG003_chrY_T0001629;Name=KDM5D
HG003_chrY	CAT	exon	20567947	20568511	.	-	.	source_transcript=ENST00000415360.1;source_transcript_name=KDM5D-203;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415360.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000415360.1,ENST00000415360.1;transcript_id=HG003_chrY_T0001629;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001629;transcript_name=HG003_chrY_T0001629;gene_name=KDM5D;ID=exon:HG003_chrY_T0001629:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20567947	20568511	.	-	0	source_transcript=ENST00000415360.1;source_transcript_name=KDM5D-203;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415360.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000415360.1,ENST00000415360.1;transcript_id=HG003_chrY_T0001629;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001629;transcript_name=HG003_chrY_T0001629;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001629:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568512	20568698	.	-	.	source_transcript=ENST00000415360.1;source_transcript_name=KDM5D-203;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415360.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000415360.1,ENST00000415360.1;transcript_id=HG003_chrY_T0001629;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001629;transcript_name=HG003_chrY_T0001629;gene_name=KDM5D;ID=intron:HG003_chrY_T0001629:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20568699	20568836	.	-	.	source_transcript=ENST00000415360.1;source_transcript_name=KDM5D-203;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415360.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000415360.1,ENST00000415360.1;transcript_id=HG003_chrY_T0001629;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001629;transcript_name=HG003_chrY_T0001629;gene_name=KDM5D;ID=exon:HG003_chrY_T0001629:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20568699	20568836	.	-	0	source_transcript=ENST00000415360.1;source_transcript_name=KDM5D-203;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415360.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000415360.1,ENST00000415360.1;transcript_id=HG003_chrY_T0001629;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001629;transcript_name=HG003_chrY_T0001629;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001629:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20568837	20569086	.	-	.	source_transcript=ENST00000415360.1;source_transcript_name=KDM5D-203;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415360.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000415360.1,ENST00000415360.1;transcript_id=HG003_chrY_T0001629;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001629;transcript_name=HG003_chrY_T0001629;gene_name=KDM5D;ID=intron:HG003_chrY_T0001629:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569087	20569188	.	-	.	source_transcript=ENST00000415360.1;source_transcript_name=KDM5D-203;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415360.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000415360.1,ENST00000415360.1;transcript_id=HG003_chrY_T0001629;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001629;transcript_name=HG003_chrY_T0001629;gene_name=KDM5D;ID=exon:HG003_chrY_T0001629:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569087	20569188	.	-	0	source_transcript=ENST00000415360.1;source_transcript_name=KDM5D-203;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415360.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000415360.1,ENST00000415360.1;transcript_id=HG003_chrY_T0001629;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001629;transcript_name=HG003_chrY_T0001629;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001629:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20569189	20569639	.	-	.	source_transcript=ENST00000415360.1;source_transcript_name=KDM5D-203;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415360.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000415360.1,ENST00000415360.1;transcript_id=HG003_chrY_T0001629;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001629;transcript_name=HG003_chrY_T0001629;gene_name=KDM5D;ID=intron:HG003_chrY_T0001629:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20569640	20569714	.	-	.	source_transcript=ENST00000415360.1;source_transcript_name=KDM5D-203;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415360.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000415360.1,ENST00000415360.1;transcript_id=HG003_chrY_T0001629;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001629;transcript_name=HG003_chrY_T0001629;gene_name=KDM5D;ID=exon:HG003_chrY_T0001629:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20569640	20569714	.	-	0	source_transcript=ENST00000415360.1;source_transcript_name=KDM5D-203;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415360.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415360.1;transcript_score=200.0;transcript_class=ortholog;valid_start=False;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000415360.1,ENST00000415360.1;transcript_id=HG003_chrY_T0001629;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001629;transcript_name=HG003_chrY_T0001629;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001629:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20570465	20571371	1000	-	.	source_transcript=ENST00000485154.1;source_transcript_name=KDM5D-208;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000485154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000485154.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000485154.1,ENST00000485154.1;transcript_id=HG003_chrY_T0001630;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_G0000540;transcript_name=HG003_chrY_T0001630;gene_name=KDM5D;ID=HG003_chrY_T0001630;Name=KDM5D
HG003_chrY	CAT	exon	20570465	20571025	.	-	.	source_transcript=ENST00000485154.1;source_transcript_name=KDM5D-208;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000485154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000485154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000485154.1,ENST00000485154.1;transcript_id=HG003_chrY_T0001630;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001630;transcript_name=HG003_chrY_T0001630;gene_name=KDM5D;ID=exon:HG003_chrY_T0001630:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20571026	20571140	.	-	.	source_transcript=ENST00000485154.1;source_transcript_name=KDM5D-208;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000485154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000485154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000485154.1,ENST00000485154.1;transcript_id=HG003_chrY_T0001630;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001630;transcript_name=HG003_chrY_T0001630;gene_name=KDM5D;ID=intron:HG003_chrY_T0001630:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20571141	20571371	.	-	.	source_transcript=ENST00000485154.1;source_transcript_name=KDM5D-208;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000485154.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000485154.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000485154.1,ENST00000485154.1;transcript_id=HG003_chrY_T0001630;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001630;transcript_name=HG003_chrY_T0001630;gene_name=KDM5D;ID=exon:HG003_chrY_T0001630:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20575901	20577113	1000	-	.	source_transcript=ENST00000478891.1;source_transcript_name=KDM5D-207;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000478891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000478891.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000478891.1,ENST00000478891.1;transcript_id=HG003_chrY_T0001631;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_G0000540;transcript_name=HG003_chrY_T0001631;gene_name=KDM5D;ID=HG003_chrY_T0001631;Name=KDM5D
HG003_chrY	CAT	exon	20575901	20576504	.	-	.	source_transcript=ENST00000478891.1;source_transcript_name=KDM5D-207;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000478891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000478891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000478891.1,ENST00000478891.1;transcript_id=HG003_chrY_T0001631;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001631;transcript_name=HG003_chrY_T0001631;gene_name=KDM5D;ID=exon:HG003_chrY_T0001631:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576505	20576587	.	-	.	source_transcript=ENST00000478891.1;source_transcript_name=KDM5D-207;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000478891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000478891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000478891.1,ENST00000478891.1;transcript_id=HG003_chrY_T0001631;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001631;transcript_name=HG003_chrY_T0001631;gene_name=KDM5D;ID=intron:HG003_chrY_T0001631:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20576588	20576769	.	-	.	source_transcript=ENST00000478891.1;source_transcript_name=KDM5D-207;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000478891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000478891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000478891.1,ENST00000478891.1;transcript_id=HG003_chrY_T0001631;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001631;transcript_name=HG003_chrY_T0001631;gene_name=KDM5D;ID=exon:HG003_chrY_T0001631:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20576770	20577043	.	-	.	source_transcript=ENST00000478891.1;source_transcript_name=KDM5D-207;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000478891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000478891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000478891.1,ENST00000478891.1;transcript_id=HG003_chrY_T0001631;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001631;transcript_name=HG003_chrY_T0001631;gene_name=KDM5D;ID=intron:HG003_chrY_T0001631:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20577044	20577113	.	-	.	source_transcript=ENST00000478891.1;source_transcript_name=KDM5D-207;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000478891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000478891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000478891.1,ENST00000478891.1;transcript_id=HG003_chrY_T0001631;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001631;transcript_name=HG003_chrY_T0001631;gene_name=KDM5D;ID=exon:HG003_chrY_T0001631:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20582037	20605476	100	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_G0000540;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=HG003_chrY_T0001632;Name=KDM5D
HG003_chrY	CAT	exon	20582037	20582076	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=exon:HG003_chrY_T0001632:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20582037	20582076	.	-	0	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001632:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20582077	20592536	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=intron:HG003_chrY_T0001632:0;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592537	20592695	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=exon:HG003_chrY_T0001632:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592537	20592695	.	-	0	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001632:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592696	20592810	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=intron:HG003_chrY_T0001632:1;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20592811	20592930	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=exon:HG003_chrY_T0001632:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20592811	20592930	.	-	0	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001632:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20592931	20593348	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=intron:HG003_chrY_T0001632:2;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20593349	20593507	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=exon:HG003_chrY_T0001632:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20593349	20593507	.	-	0	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001632:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20593508	20596116	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=intron:HG003_chrY_T0001632:3;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596117	20596262	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=exon:HG003_chrY_T0001632:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596117	20596262	.	-	2	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001632:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596263	20596385	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=intron:HG003_chrY_T0001632:4;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20596386	20596515	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=exon:HG003_chrY_T0001632:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20596386	20596515	.	-	0	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001632:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20596516	20602082	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=intron:HG003_chrY_T0001632:5;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602083	20602253	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=exon:HG003_chrY_T0001632:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602083	20602253	.	-	0	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001632:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602254	20602499	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=intron:HG003_chrY_T0001632:6;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20602500	20602622	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=exon:HG003_chrY_T0001632:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20602500	20602622	.	-	0	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001632:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20602623	20603926	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=intron:HG003_chrY_T0001632:7;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20603927	20604004	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=exon:HG003_chrY_T0001632:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20603927	20604004	.	-	0	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001632:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20604005	20605149	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=intron:HG003_chrY_T0001632:8;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605150	20605318	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=exon:HG003_chrY_T0001632:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	20605150	20605299	.	-	0	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=CDS:HG003_chrY_T0001632:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	20605297	20605299	.	-	0	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=start_codon:HG003_chrY_T0001632;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605319	20605435	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=intron:HG003_chrY_T0001632:9;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20605436	20605476	.	-	.	source_transcript=ENST00000447300.1;source_transcript_name=KDM5D-205;source_gene=ENSG00000012817.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000012817.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000447300.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447300.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5D;alternative_source_transcripts=ENST00000447300.1,ENST00000447300.1;transcript_id=HG003_chrY_T0001632;gene_id=HG003_chrY_G0000540;Parent=HG003_chrY_T0001632;transcript_name=HG003_chrY_T0001632;gene_name=KDM5D;ID=exon:HG003_chrY_T0001632:10;Name=KDM5D;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20605521	20620743	.	+	.	source_gene_common_name=ENSG00000288049;source_gene=ENSG00000288049.2;alternative_source_transcripts=ENST00000653234.1,ENST00000653234.1;gene_id=HG003_chrY_G0000541;gene_biotype=lncRNA;gene_name=ENSG00000288049;gene_sources=liftoff;ID=HG003_chrY_G0000541;Name=ENSG00000288049
HG003_chrY	CAT	transcript	20605521	20618107	1000	+	.	source_transcript=ENST00000653234.1;source_transcript_name=ENST00000653234;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653234.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653234.1;transcript_score=299.97;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000653234.1,ENST00000653234.1;transcript_id=HG003_chrY_T0001633;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_G0000541;transcript_name=HG003_chrY_T0001633;gene_name=ENSG00000288049;ID=HG003_chrY_T0001633;Name=ENSG00000288049
HG003_chrY	CAT	exon	20605521	20606478	.	+	.	source_transcript=ENST00000653234.1;source_transcript_name=ENST00000653234;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653234.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653234.1;transcript_score=299.97;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000653234.1,ENST00000653234.1;transcript_id=HG003_chrY_T0001633;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001633;transcript_name=HG003_chrY_T0001633;gene_name=ENSG00000288049;ID=exon:HG003_chrY_T0001633:0;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20606479	20615390	.	+	.	source_transcript=ENST00000653234.1;source_transcript_name=ENST00000653234;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653234.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653234.1;transcript_score=299.97;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000653234.1,ENST00000653234.1;transcript_id=HG003_chrY_T0001633;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001633;transcript_name=HG003_chrY_T0001633;gene_name=ENSG00000288049;ID=intron:HG003_chrY_T0001633:0;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615391	20615580	.	+	.	source_transcript=ENST00000653234.1;source_transcript_name=ENST00000653234;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653234.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653234.1;transcript_score=299.97;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000653234.1,ENST00000653234.1;transcript_id=HG003_chrY_T0001633;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001633;transcript_name=HG003_chrY_T0001633;gene_name=ENSG00000288049;ID=exon:HG003_chrY_T0001633:1;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20615581	20615969	.	+	.	source_transcript=ENST00000653234.1;source_transcript_name=ENST00000653234;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653234.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653234.1;transcript_score=299.97;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000653234.1,ENST00000653234.1;transcript_id=HG003_chrY_T0001633;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001633;transcript_name=HG003_chrY_T0001633;gene_name=ENSG00000288049;ID=intron:HG003_chrY_T0001633:1;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615970	20618107	.	+	.	source_transcript=ENST00000653234.1;source_transcript_name=ENST00000653234;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000653234.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000653234.1;transcript_score=299.97;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000653234.1,ENST00000653234.1;transcript_id=HG003_chrY_T0001633;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001633;transcript_name=HG003_chrY_T0001633;gene_name=ENSG00000288049;ID=exon:HG003_chrY_T0001633:2;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20605717	20620743	1000	+	.	source_transcript=ENST00000652994.1;source_transcript_name=ENST00000652994;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652994.1;transcript_score=299.98199999999997;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000652994.1,ENST00000652994.1;transcript_id=HG003_chrY_T0001634;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_G0000541;transcript_name=HG003_chrY_T0001634;gene_name=ENSG00000288049;ID=HG003_chrY_T0001634;Name=ENSG00000288049
HG003_chrY	CAT	exon	20605717	20606478	.	+	.	source_transcript=ENST00000652994.1;source_transcript_name=ENST00000652994;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652994.1;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000652994.1,ENST00000652994.1;transcript_id=HG003_chrY_T0001634;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001634;transcript_name=HG003_chrY_T0001634;gene_name=ENSG00000288049;ID=exon:HG003_chrY_T0001634:0;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20606479	20615491	.	+	.	source_transcript=ENST00000652994.1;source_transcript_name=ENST00000652994;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652994.1;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000652994.1,ENST00000652994.1;transcript_id=HG003_chrY_T0001634;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001634;transcript_name=HG003_chrY_T0001634;gene_name=ENSG00000288049;ID=intron:HG003_chrY_T0001634:0;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615492	20615580	.	+	.	source_transcript=ENST00000652994.1;source_transcript_name=ENST00000652994;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652994.1;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000652994.1,ENST00000652994.1;transcript_id=HG003_chrY_T0001634;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001634;transcript_name=HG003_chrY_T0001634;gene_name=ENSG00000288049;ID=exon:HG003_chrY_T0001634:1;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20615581	20615969	.	+	.	source_transcript=ENST00000652994.1;source_transcript_name=ENST00000652994;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652994.1;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000652994.1,ENST00000652994.1;transcript_id=HG003_chrY_T0001634;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001634;transcript_name=HG003_chrY_T0001634;gene_name=ENSG00000288049;ID=intron:HG003_chrY_T0001634:1;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615970	20620743	.	+	.	source_transcript=ENST00000652994.1;source_transcript_name=ENST00000652994;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652994.1;transcript_score=299.98199999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000652994.1,ENST00000652994.1;transcript_id=HG003_chrY_T0001634;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001634;transcript_name=HG003_chrY_T0001634;gene_name=ENSG00000288049;ID=exon:HG003_chrY_T0001634:2;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20605753	20615462	1000	+	.	source_transcript=ENST00000766639.1;source_transcript_name=ENST00000766639;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766639.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766639.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000766639.1,ENST00000766639.1;transcript_id=HG003_chrY_T0001635;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_G0000541;transcript_name=HG003_chrY_T0001635;gene_name=ENSG00000288049;ID=HG003_chrY_T0001635;Name=ENSG00000288049
HG003_chrY	CAT	exon	20605753	20605963	.	+	.	source_transcript=ENST00000766639.1;source_transcript_name=ENST00000766639;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766639.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766639.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000766639.1,ENST00000766639.1;transcript_id=HG003_chrY_T0001635;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001635;transcript_name=HG003_chrY_T0001635;gene_name=ENSG00000288049;ID=exon:HG003_chrY_T0001635:0;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605964	20615390	.	+	.	source_transcript=ENST00000766639.1;source_transcript_name=ENST00000766639;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766639.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766639.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000766639.1,ENST00000766639.1;transcript_id=HG003_chrY_T0001635;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001635;transcript_name=HG003_chrY_T0001635;gene_name=ENSG00000288049;ID=intron:HG003_chrY_T0001635:0;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615391	20615462	.	+	.	source_transcript=ENST00000766639.1;source_transcript_name=ENST00000766639;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766639.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766639.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000766639.1,ENST00000766639.1;transcript_id=HG003_chrY_T0001635;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001635;transcript_name=HG003_chrY_T0001635;gene_name=ENSG00000288049;ID=exon:HG003_chrY_T0001635:1;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	20605766	20616060	1000	+	.	source_transcript=ENST00000766638.1;source_transcript_name=ENST00000766638;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766638.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766638.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000766638.1,ENST00000766638.1;transcript_id=HG003_chrY_T0001636;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_G0000541;transcript_name=HG003_chrY_T0001636;gene_name=ENSG00000288049;ID=HG003_chrY_T0001636;Name=ENSG00000288049
HG003_chrY	CAT	exon	20605766	20605963	.	+	.	source_transcript=ENST00000766638.1;source_transcript_name=ENST00000766638;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766638.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766638.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000766638.1,ENST00000766638.1;transcript_id=HG003_chrY_T0001636;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001636;transcript_name=HG003_chrY_T0001636;gene_name=ENSG00000288049;ID=exon:HG003_chrY_T0001636:0;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20605964	20615491	.	+	.	source_transcript=ENST00000766638.1;source_transcript_name=ENST00000766638;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766638.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766638.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000766638.1,ENST00000766638.1;transcript_id=HG003_chrY_T0001636;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001636;transcript_name=HG003_chrY_T0001636;gene_name=ENSG00000288049;ID=intron:HG003_chrY_T0001636:0;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615492	20615580	.	+	.	source_transcript=ENST00000766638.1;source_transcript_name=ENST00000766638;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766638.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766638.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000766638.1,ENST00000766638.1;transcript_id=HG003_chrY_T0001636;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001636;transcript_name=HG003_chrY_T0001636;gene_name=ENSG00000288049;ID=exon:HG003_chrY_T0001636:1;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20615581	20615969	.	+	.	source_transcript=ENST00000766638.1;source_transcript_name=ENST00000766638;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766638.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766638.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000766638.1,ENST00000766638.1;transcript_id=HG003_chrY_T0001636;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001636;transcript_name=HG003_chrY_T0001636;gene_name=ENSG00000288049;ID=intron:HG003_chrY_T0001636:1;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20615970	20616060	.	+	.	source_transcript=ENST00000766638.1;source_transcript_name=ENST00000766638;source_gene=ENSG00000288049.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288049.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000766638.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000766638.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288049;alternative_source_transcripts=ENST00000766638.1,ENST00000766638.1;transcript_id=HG003_chrY_T0001636;gene_id=HG003_chrY_G0000541;Parent=HG003_chrY_T0001636;transcript_name=HG003_chrY_T0001636;gene_name=ENSG00000288049;ID=exon:HG003_chrY_T0001636:2;Name=ENSG00000288049;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20729605	20744920	.	+	.	source_gene_common_name=ENSG00000300595;source_gene=ENSG00000300595.1;alternative_source_transcripts=ENST00000772853.1,ENST00000772853.1;gene_id=HG003_chrY_G0000542;gene_biotype=lncRNA;gene_name=ENSG00000300595;gene_sources=liftoff;ID=HG003_chrY_G0000542;Name=ENSG00000300595
HG003_chrY	CAT	transcript	20729605	20744920	1000	+	.	source_transcript=ENST00000772853.1;source_transcript_name=ENST00000772853;source_gene=ENSG00000300595.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300595.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772853.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772853.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300595;alternative_source_transcripts=ENST00000772853.1,ENST00000772853.1;transcript_id=HG003_chrY_T0001637;gene_id=HG003_chrY_G0000542;Parent=HG003_chrY_G0000542;transcript_name=HG003_chrY_T0001637;gene_name=ENSG00000300595;ID=HG003_chrY_T0001637;Name=ENSG00000300595
HG003_chrY	CAT	exon	20729605	20729866	.	+	.	source_transcript=ENST00000772853.1;source_transcript_name=ENST00000772853;source_gene=ENSG00000300595.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300595.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772853.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772853.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300595;alternative_source_transcripts=ENST00000772853.1,ENST00000772853.1;transcript_id=HG003_chrY_T0001637;gene_id=HG003_chrY_G0000542;Parent=HG003_chrY_T0001637;transcript_name=HG003_chrY_T0001637;gene_name=ENSG00000300595;ID=exon:HG003_chrY_T0001637:0;Name=ENSG00000300595;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20729867	20744486	.	+	.	source_transcript=ENST00000772853.1;source_transcript_name=ENST00000772853;source_gene=ENSG00000300595.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300595.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772853.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772853.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300595;alternative_source_transcripts=ENST00000772853.1,ENST00000772853.1;transcript_id=HG003_chrY_T0001637;gene_id=HG003_chrY_G0000542;Parent=HG003_chrY_T0001637;transcript_name=HG003_chrY_T0001637;gene_name=ENSG00000300595;ID=intron:HG003_chrY_T0001637:0;Name=ENSG00000300595;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20744487	20744920	.	+	.	source_transcript=ENST00000772853.1;source_transcript_name=ENST00000772853;source_gene=ENSG00000300595.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300595.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772853.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772853.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300595;alternative_source_transcripts=ENST00000772853.1,ENST00000772853.1;transcript_id=HG003_chrY_T0001637;gene_id=HG003_chrY_G0000542;Parent=HG003_chrY_T0001637;transcript_name=HG003_chrY_T0001637;gene_name=ENSG00000300595;ID=exon:HG003_chrY_T0001637:1;Name=ENSG00000300595;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20792887	20793257	.	-	.	source_gene_common_name=ENSG00000274837;source_gene=ENSG00000274837.1;alternative_source_transcripts=ENST00000616477.1,ENST00000616477.1;gene_id=HG003_chrY_G0000543;gene_biotype=processed_pseudogene;gene_name=ENSG00000274837;gene_sources=liftoff;ID=HG003_chrY_G0000543;Name=ENSG00000274837
HG003_chrY	CAT	transcript	20792887	20793257	1000	-	.	source_transcript=ENST00000616477.1;source_transcript_name=ENST00000616477;source_gene=ENSG00000274837.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274837.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000616477.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000616477.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274837;alternative_source_transcripts=ENST00000616477.1,ENST00000616477.1;transcript_id=HG003_chrY_T0001638;gene_id=HG003_chrY_G0000543;Parent=HG003_chrY_G0000543;transcript_name=HG003_chrY_T0001638;gene_name=ENSG00000274837;ID=HG003_chrY_T0001638;Name=ENSG00000274837
HG003_chrY	CAT	exon	20792887	20793257	.	-	.	source_transcript=ENST00000616477.1;source_transcript_name=ENST00000616477;source_gene=ENSG00000274837.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274837.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000616477.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000616477.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274837;alternative_source_transcripts=ENST00000616477.1,ENST00000616477.1;transcript_id=HG003_chrY_T0001638;gene_id=HG003_chrY_G0000543;Parent=HG003_chrY_T0001638;transcript_name=HG003_chrY_T0001638;gene_name=ENSG00000274837;ID=exon:HG003_chrY_T0001638:0;Name=ENSG00000274837;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20847327	20848604	.	-	.	source_gene_common_name=RCC2P2;source_gene=ENSG00000237997.1;alternative_source_transcripts=ENST00000422174.1,ENST00000422174.1;gene_id=HG003_chrY_G0000544;gene_biotype=processed_pseudogene;gene_name=RCC2P2;gene_sources=liftoff;ID=HG003_chrY_G0000544;Name=RCC2P2
HG003_chrY	CAT	transcript	20847327	20848604	1000	-	.	source_transcript=ENST00000422174.1;source_transcript_name=RCC2P2-201;source_gene=ENSG00000237997.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237997.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000422174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422174.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RCC2P2;alternative_source_transcripts=ENST00000422174.1,ENST00000422174.1;transcript_id=HG003_chrY_T0001639;gene_id=HG003_chrY_G0000544;Parent=HG003_chrY_G0000544;transcript_name=HG003_chrY_T0001639;gene_name=RCC2P2;ID=HG003_chrY_T0001639;Name=RCC2P2
HG003_chrY	CAT	exon	20847327	20847456	.	-	.	source_transcript=ENST00000422174.1;source_transcript_name=RCC2P2-201;source_gene=ENSG00000237997.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237997.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000422174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422174.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RCC2P2;alternative_source_transcripts=ENST00000422174.1,ENST00000422174.1;transcript_id=HG003_chrY_T0001639;gene_id=HG003_chrY_G0000544;Parent=HG003_chrY_T0001639;transcript_name=HG003_chrY_T0001639;gene_name=RCC2P2;ID=exon:HG003_chrY_T0001639:0;Name=RCC2P2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20847457	20847816	.	-	.	source_transcript=ENST00000422174.1;source_transcript_name=RCC2P2-201;source_gene=ENSG00000237997.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237997.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000422174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422174.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RCC2P2;alternative_source_transcripts=ENST00000422174.1,ENST00000422174.1;transcript_id=HG003_chrY_T0001639;gene_id=HG003_chrY_G0000544;Parent=HG003_chrY_T0001639;transcript_name=HG003_chrY_T0001639;gene_name=RCC2P2;ID=intron:HG003_chrY_T0001639:0;Name=RCC2P2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20847817	20848604	.	-	.	source_transcript=ENST00000422174.1;source_transcript_name=RCC2P2-201;source_gene=ENSG00000237997.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237997.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000422174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422174.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RCC2P2;alternative_source_transcripts=ENST00000422174.1,ENST00000422174.1;transcript_id=HG003_chrY_T0001639;gene_id=HG003_chrY_G0000544;Parent=HG003_chrY_T0001639;transcript_name=HG003_chrY_T0001639;gene_name=RCC2P2;ID=exon:HG003_chrY_T0001639:1;Name=RCC2P2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	20861937	20872954	.	-	.	source_gene_common_name=ZNF886P;source_gene=ENSG00000232522.1;alternative_source_transcripts=ENST00000450781.1,ENST00000450781.1;gene_id=HG003_chrY_G0000545;gene_biotype=unprocessed_pseudogene;gene_name=ZNF886P;gene_sources=liftoff;ID=HG003_chrY_G0000545;Name=ZNF886P
HG003_chrY	CAT	transcript	20861937	20872954	1000	-	.	source_transcript=ENST00000450781.1;source_transcript_name=ZNF886P-201;source_gene=ENSG00000232522.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232522.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450781.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF886P;alternative_source_transcripts=ENST00000450781.1,ENST00000450781.1;transcript_id=HG003_chrY_T0001640;gene_id=HG003_chrY_G0000545;Parent=HG003_chrY_G0000545;transcript_name=HG003_chrY_T0001640;gene_name=ZNF886P;ID=HG003_chrY_T0001640;Name=ZNF886P
HG003_chrY	CAT	exon	20861937	20862451	.	-	.	source_transcript=ENST00000450781.1;source_transcript_name=ZNF886P-201;source_gene=ENSG00000232522.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232522.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450781.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF886P;alternative_source_transcripts=ENST00000450781.1,ENST00000450781.1;transcript_id=HG003_chrY_T0001640;gene_id=HG003_chrY_G0000545;Parent=HG003_chrY_T0001640;transcript_name=HG003_chrY_T0001640;gene_name=ZNF886P;ID=exon:HG003_chrY_T0001640:0;Name=ZNF886P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20862452	20866492	.	-	.	source_transcript=ENST00000450781.1;source_transcript_name=ZNF886P-201;source_gene=ENSG00000232522.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232522.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450781.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF886P;alternative_source_transcripts=ENST00000450781.1,ENST00000450781.1;transcript_id=HG003_chrY_T0001640;gene_id=HG003_chrY_G0000545;Parent=HG003_chrY_T0001640;transcript_name=HG003_chrY_T0001640;gene_name=ZNF886P;ID=intron:HG003_chrY_T0001640:0;Name=ZNF886P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20866493	20866581	.	-	.	source_transcript=ENST00000450781.1;source_transcript_name=ZNF886P-201;source_gene=ENSG00000232522.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232522.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450781.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF886P;alternative_source_transcripts=ENST00000450781.1,ENST00000450781.1;transcript_id=HG003_chrY_T0001640;gene_id=HG003_chrY_G0000545;Parent=HG003_chrY_T0001640;transcript_name=HG003_chrY_T0001640;gene_name=ZNF886P;ID=exon:HG003_chrY_T0001640:1;Name=ZNF886P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	20866582	20872835	.	-	.	source_transcript=ENST00000450781.1;source_transcript_name=ZNF886P-201;source_gene=ENSG00000232522.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232522.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450781.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF886P;alternative_source_transcripts=ENST00000450781.1,ENST00000450781.1;transcript_id=HG003_chrY_T0001640;gene_id=HG003_chrY_G0000545;Parent=HG003_chrY_T0001640;transcript_name=HG003_chrY_T0001640;gene_name=ZNF886P;ID=intron:HG003_chrY_T0001640:1;Name=ZNF886P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	20872836	20872954	.	-	.	source_transcript=ENST00000450781.1;source_transcript_name=ZNF886P-201;source_gene=ENSG00000232522.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232522.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450781.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF886P;alternative_source_transcripts=ENST00000450781.1,ENST00000450781.1;transcript_id=HG003_chrY_T0001640;gene_id=HG003_chrY_G0000545;Parent=HG003_chrY_T0001640;transcript_name=HG003_chrY_T0001640;gene_name=ZNF886P;ID=exon:HG003_chrY_T0001640:2;Name=ZNF886P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21219478	21226223	.	+	.	source_gene_common_name=ZNF885P;source_gene=ENSG00000228764.1;alternative_source_transcripts=ENST00000420174.1,ENST00000420174.1;gene_id=HG003_chrY_G0000546;gene_biotype=processed_pseudogene;gene_name=ZNF885P;gene_sources=liftoff;ID=HG003_chrY_G0000546;Name=ZNF885P
HG003_chrY	CAT	transcript	21219478	21226223	1000	+	.	source_transcript=ENST00000420174.1;source_transcript_name=ZNF885P-201;source_gene=ENSG00000228764.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228764.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420174.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF885P;alternative_source_transcripts=ENST00000420174.1,ENST00000420174.1;transcript_id=HG003_chrY_T0001641;gene_id=HG003_chrY_G0000546;Parent=HG003_chrY_G0000546;transcript_name=HG003_chrY_T0001641;gene_name=ZNF885P;ID=HG003_chrY_T0001641;Name=ZNF885P
HG003_chrY	CAT	exon	21219478	21219537	.	+	.	source_transcript=ENST00000420174.1;source_transcript_name=ZNF885P-201;source_gene=ENSG00000228764.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228764.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420174.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF885P;alternative_source_transcripts=ENST00000420174.1,ENST00000420174.1;transcript_id=HG003_chrY_T0001641;gene_id=HG003_chrY_G0000546;Parent=HG003_chrY_T0001641;transcript_name=HG003_chrY_T0001641;gene_name=ZNF885P;ID=exon:HG003_chrY_T0001641:0;Name=ZNF885P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21219538	21224934	.	+	.	source_transcript=ENST00000420174.1;source_transcript_name=ZNF885P-201;source_gene=ENSG00000228764.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228764.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420174.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF885P;alternative_source_transcripts=ENST00000420174.1,ENST00000420174.1;transcript_id=HG003_chrY_T0001641;gene_id=HG003_chrY_G0000546;Parent=HG003_chrY_T0001641;transcript_name=HG003_chrY_T0001641;gene_name=ZNF885P;ID=intron:HG003_chrY_T0001641:0;Name=ZNF885P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21224935	21225446	.	+	.	source_transcript=ENST00000420174.1;source_transcript_name=ZNF885P-201;source_gene=ENSG00000228764.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228764.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420174.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF885P;alternative_source_transcripts=ENST00000420174.1,ENST00000420174.1;transcript_id=HG003_chrY_T0001641;gene_id=HG003_chrY_G0000546;Parent=HG003_chrY_T0001641;transcript_name=HG003_chrY_T0001641;gene_name=ZNF885P;ID=exon:HG003_chrY_T0001641:1;Name=ZNF885P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21225447	21225697	.	+	.	source_transcript=ENST00000420174.1;source_transcript_name=ZNF885P-201;source_gene=ENSG00000228764.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228764.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420174.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF885P;alternative_source_transcripts=ENST00000420174.1,ENST00000420174.1;transcript_id=HG003_chrY_T0001641;gene_id=HG003_chrY_G0000546;Parent=HG003_chrY_T0001641;transcript_name=HG003_chrY_T0001641;gene_name=ZNF885P;ID=intron:HG003_chrY_T0001641:1;Name=ZNF885P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21225698	21226223	.	+	.	source_transcript=ENST00000420174.1;source_transcript_name=ZNF885P-201;source_gene=ENSG00000228764.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000228764.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420174.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420174.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF885P;alternative_source_transcripts=ENST00000420174.1,ENST00000420174.1;transcript_id=HG003_chrY_T0001641;gene_id=HG003_chrY_G0000546;Parent=HG003_chrY_T0001641;transcript_name=HG003_chrY_T0001641;gene_name=ZNF885P;ID=exon:HG003_chrY_T0001641:2;Name=ZNF885P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21294343	21404936	.	-	.	source_gene_common_name=TTTY10;source_gene=ENSG00000229236.4;alternative_source_transcripts=ENST00000661812.1,ENST00000661812.1;gene_id=HG003_chrY_G0000547;gene_biotype=lncRNA;gene_name=TTTY10;gene_sources=liftoff;ID=HG003_chrY_G0000547;Name=TTTY10
HG003_chrY	CAT	transcript	21294343	21404914	1000	-	.	source_transcript=ENST00000661812.1;source_transcript_name=TTTY10-208;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000661812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000661812.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000661812.1,ENST00000661812.1;transcript_id=HG003_chrY_T0001642;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001642;gene_name=TTTY10;ID=HG003_chrY_T0001642;Name=TTTY10
HG003_chrY	CAT	exon	21294343	21295249	.	-	.	source_transcript=ENST00000661812.1;source_transcript_name=TTTY10-208;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000661812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000661812.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000661812.1,ENST00000661812.1;transcript_id=HG003_chrY_T0001642;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001642;transcript_name=HG003_chrY_T0001642;gene_name=TTTY10;ID=exon:HG003_chrY_T0001642:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21295250	21295854	.	-	.	source_transcript=ENST00000661812.1;source_transcript_name=TTTY10-208;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000661812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000661812.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000661812.1,ENST00000661812.1;transcript_id=HG003_chrY_T0001642;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001642;transcript_name=HG003_chrY_T0001642;gene_name=TTTY10;ID=intron:HG003_chrY_T0001642:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21295855	21296094	.	-	.	source_transcript=ENST00000661812.1;source_transcript_name=TTTY10-208;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000661812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000661812.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000661812.1,ENST00000661812.1;transcript_id=HG003_chrY_T0001642;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001642;transcript_name=HG003_chrY_T0001642;gene_name=TTTY10;ID=exon:HG003_chrY_T0001642:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21296095	21297615	.	-	.	source_transcript=ENST00000661812.1;source_transcript_name=TTTY10-208;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000661812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000661812.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000661812.1,ENST00000661812.1;transcript_id=HG003_chrY_T0001642;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001642;transcript_name=HG003_chrY_T0001642;gene_name=TTTY10;ID=intron:HG003_chrY_T0001642:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21297616	21297675	.	-	.	source_transcript=ENST00000661812.1;source_transcript_name=TTTY10-208;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000661812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000661812.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000661812.1,ENST00000661812.1;transcript_id=HG003_chrY_T0001642;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001642;transcript_name=HG003_chrY_T0001642;gene_name=TTTY10;ID=exon:HG003_chrY_T0001642:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21297676	21336767	.	-	.	source_transcript=ENST00000661812.1;source_transcript_name=TTTY10-208;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000661812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000661812.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000661812.1,ENST00000661812.1;transcript_id=HG003_chrY_T0001642;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001642;transcript_name=HG003_chrY_T0001642;gene_name=TTTY10;ID=intron:HG003_chrY_T0001642:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21336768	21336872	.	-	.	source_transcript=ENST00000661812.1;source_transcript_name=TTTY10-208;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000661812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000661812.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000661812.1,ENST00000661812.1;transcript_id=HG003_chrY_T0001642;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001642;transcript_name=HG003_chrY_T0001642;gene_name=TTTY10;ID=exon:HG003_chrY_T0001642:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21404522	.	-	.	source_transcript=ENST00000661812.1;source_transcript_name=TTTY10-208;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000661812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000661812.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000661812.1,ENST00000661812.1;transcript_id=HG003_chrY_T0001642;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001642;transcript_name=HG003_chrY_T0001642;gene_name=TTTY10;ID=intron:HG003_chrY_T0001642:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404914	.	-	.	source_transcript=ENST00000661812.1;source_transcript_name=TTTY10-208;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000661812.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000661812.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000661812.1,ENST00000661812.1;transcript_id=HG003_chrY_T0001642;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001642;transcript_name=HG003_chrY_T0001642;gene_name=TTTY10;ID=exon:HG003_chrY_T0001642:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21294343	21404932	1000	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=HG003_chrY_T0001643;Name=TTTY10
HG003_chrY	CAT	exon	21294343	21295249	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=exon:HG003_chrY_T0001643:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21295250	21295854	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=intron:HG003_chrY_T0001643:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21295855	21296094	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=exon:HG003_chrY_T0001643:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21296095	21297615	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=intron:HG003_chrY_T0001643:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21297616	21297675	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=exon:HG003_chrY_T0001643:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21297676	21299298	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=intron:HG003_chrY_T0001643:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21299299	21299408	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=exon:HG003_chrY_T0001643:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21299409	21336767	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=intron:HG003_chrY_T0001643:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21336768	21336872	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=exon:HG003_chrY_T0001643:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21347686	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=intron:HG003_chrY_T0001643:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21347687	21347745	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=exon:HG003_chrY_T0001643:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21347746	21348451	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=intron:HG003_chrY_T0001643:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21348452	21348649	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=exon:HG003_chrY_T0001643:6;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21348650	21350547	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=intron:HG003_chrY_T0001643:6;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21350548	21350716	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=exon:HG003_chrY_T0001643:7;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21350717	21353683	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=intron:HG003_chrY_T0001643:7;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21353684	21353856	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=exon:HG003_chrY_T0001643:8;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21353857	21404522	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=intron:HG003_chrY_T0001643:8;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404932	.	-	.	source_transcript=ENST00000666990.2;source_transcript_name=TTTY10-211;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666990.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000666990.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666990.2,ENST00000666990.2;transcript_id=HG003_chrY_T0001643;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001643;transcript_name=HG003_chrY_T0001643;gene_name=TTTY10;ID=exon:HG003_chrY_T0001643:9;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21294343	21404914	1000	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=HG003_chrY_T0001644;Name=TTTY10
HG003_chrY	CAT	exon	21294343	21295249	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=exon:HG003_chrY_T0001644:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21295250	21295854	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=intron:HG003_chrY_T0001644:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21295855	21296094	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=exon:HG003_chrY_T0001644:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21296095	21297615	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=intron:HG003_chrY_T0001644:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21297616	21297675	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=exon:HG003_chrY_T0001644:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21297676	21299298	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=intron:HG003_chrY_T0001644:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21299299	21299408	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=exon:HG003_chrY_T0001644:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21299409	21336767	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=intron:HG003_chrY_T0001644:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21336768	21336872	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=exon:HG003_chrY_T0001644:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21350547	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=intron:HG003_chrY_T0001644:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21350548	21350716	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=exon:HG003_chrY_T0001644:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21350717	21353683	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=intron:HG003_chrY_T0001644:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21353684	21353856	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=exon:HG003_chrY_T0001644:6;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21353857	21404522	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=intron:HG003_chrY_T0001644:6;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404914	.	-	.	source_transcript=ENST00000670518.1;source_transcript_name=TTTY10-213;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000670518.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000670518.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000670518.1,ENST00000670518.1;transcript_id=HG003_chrY_T0001644;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001644;transcript_name=HG003_chrY_T0001644;gene_name=TTTY10;ID=exon:HG003_chrY_T0001644:7;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21294416	21404639	1000	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=HG003_chrY_T0001645;Name=TTTY10
HG003_chrY	CAT	exon	21294416	21295249	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=exon:HG003_chrY_T0001645:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21295250	21295854	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=intron:HG003_chrY_T0001645:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21295855	21296094	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=exon:HG003_chrY_T0001645:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21296095	21297615	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=intron:HG003_chrY_T0001645:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21297616	21297675	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=exon:HG003_chrY_T0001645:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21297676	21299298	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=intron:HG003_chrY_T0001645:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21299299	21299408	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=exon:HG003_chrY_T0001645:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21299409	21336767	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=intron:HG003_chrY_T0001645:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21336768	21336872	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=exon:HG003_chrY_T0001645:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21347686	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=intron:HG003_chrY_T0001645:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21347687	21347745	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=exon:HG003_chrY_T0001645:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21347746	21348451	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=intron:HG003_chrY_T0001645:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21348452	21348649	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=exon:HG003_chrY_T0001645:6;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21348650	21350547	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=intron:HG003_chrY_T0001645:6;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21350548	21350716	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=exon:HG003_chrY_T0001645:7;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21350717	21404522	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=intron:HG003_chrY_T0001645:7;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404639	.	-	.	source_transcript=ENST00000657696.1;source_transcript_name=TTTY10-204;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000657696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000657696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000657696.1,ENST00000657696.1;transcript_id=HG003_chrY_T0001645;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001645;transcript_name=HG003_chrY_T0001645;gene_name=TTTY10;ID=exon:HG003_chrY_T0001645:8;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21294507	21404673	1000	-	.	source_transcript=ENST00000660111.1;source_transcript_name=TTTY10-207;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660111.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000660111.1,ENST00000660111.1;transcript_id=HG003_chrY_T0001646;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001646;gene_name=TTTY10;ID=HG003_chrY_T0001646;Name=TTTY10
HG003_chrY	CAT	exon	21294507	21295249	.	-	.	source_transcript=ENST00000660111.1;source_transcript_name=TTTY10-207;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000660111.1,ENST00000660111.1;transcript_id=HG003_chrY_T0001646;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001646;transcript_name=HG003_chrY_T0001646;gene_name=TTTY10;ID=exon:HG003_chrY_T0001646:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21295250	21295854	.	-	.	source_transcript=ENST00000660111.1;source_transcript_name=TTTY10-207;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000660111.1,ENST00000660111.1;transcript_id=HG003_chrY_T0001646;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001646;transcript_name=HG003_chrY_T0001646;gene_name=TTTY10;ID=intron:HG003_chrY_T0001646:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21295855	21296094	.	-	.	source_transcript=ENST00000660111.1;source_transcript_name=TTTY10-207;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000660111.1,ENST00000660111.1;transcript_id=HG003_chrY_T0001646;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001646;transcript_name=HG003_chrY_T0001646;gene_name=TTTY10;ID=exon:HG003_chrY_T0001646:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21296095	21297615	.	-	.	source_transcript=ENST00000660111.1;source_transcript_name=TTTY10-207;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000660111.1,ENST00000660111.1;transcript_id=HG003_chrY_T0001646;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001646;transcript_name=HG003_chrY_T0001646;gene_name=TTTY10;ID=intron:HG003_chrY_T0001646:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21297616	21297675	.	-	.	source_transcript=ENST00000660111.1;source_transcript_name=TTTY10-207;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000660111.1,ENST00000660111.1;transcript_id=HG003_chrY_T0001646;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001646;transcript_name=HG003_chrY_T0001646;gene_name=TTTY10;ID=exon:HG003_chrY_T0001646:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21297676	21299298	.	-	.	source_transcript=ENST00000660111.1;source_transcript_name=TTTY10-207;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000660111.1,ENST00000660111.1;transcript_id=HG003_chrY_T0001646;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001646;transcript_name=HG003_chrY_T0001646;gene_name=TTTY10;ID=intron:HG003_chrY_T0001646:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21299299	21299408	.	-	.	source_transcript=ENST00000660111.1;source_transcript_name=TTTY10-207;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000660111.1,ENST00000660111.1;transcript_id=HG003_chrY_T0001646;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001646;transcript_name=HG003_chrY_T0001646;gene_name=TTTY10;ID=exon:HG003_chrY_T0001646:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21299409	21336767	.	-	.	source_transcript=ENST00000660111.1;source_transcript_name=TTTY10-207;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000660111.1,ENST00000660111.1;transcript_id=HG003_chrY_T0001646;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001646;transcript_name=HG003_chrY_T0001646;gene_name=TTTY10;ID=intron:HG003_chrY_T0001646:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21336768	21336872	.	-	.	source_transcript=ENST00000660111.1;source_transcript_name=TTTY10-207;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000660111.1,ENST00000660111.1;transcript_id=HG003_chrY_T0001646;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001646;transcript_name=HG003_chrY_T0001646;gene_name=TTTY10;ID=exon:HG003_chrY_T0001646:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21404522	.	-	.	source_transcript=ENST00000660111.1;source_transcript_name=TTTY10-207;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000660111.1,ENST00000660111.1;transcript_id=HG003_chrY_T0001646;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001646;transcript_name=HG003_chrY_T0001646;gene_name=TTTY10;ID=intron:HG003_chrY_T0001646:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404673	.	-	.	source_transcript=ENST00000660111.1;source_transcript_name=TTTY10-207;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660111.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660111.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000660111.1,ENST00000660111.1;transcript_id=HG003_chrY_T0001646;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001646;transcript_name=HG003_chrY_T0001646;gene_name=TTTY10;ID=exon:HG003_chrY_T0001646:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21294743	21404779	1000	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=HG003_chrY_T0001647;Name=TTTY10
HG003_chrY	CAT	exon	21294743	21295249	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=exon:HG003_chrY_T0001647:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21295250	21295854	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=intron:HG003_chrY_T0001647:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21295855	21296094	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=exon:HG003_chrY_T0001647:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21296095	21297615	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=intron:HG003_chrY_T0001647:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21297616	21297675	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=exon:HG003_chrY_T0001647:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21297676	21299298	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=intron:HG003_chrY_T0001647:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21299299	21299408	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=exon:HG003_chrY_T0001647:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21299409	21336767	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=intron:HG003_chrY_T0001647:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21336768	21336872	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=exon:HG003_chrY_T0001647:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21347686	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=intron:HG003_chrY_T0001647:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21347687	21347745	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=exon:HG003_chrY_T0001647:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21347746	21348303	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=intron:HG003_chrY_T0001647:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21348304	21348416	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=exon:HG003_chrY_T0001647:6;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21348417	21350547	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=intron:HG003_chrY_T0001647:6;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21350548	21350716	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=exon:HG003_chrY_T0001647:7;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21350717	21353683	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=intron:HG003_chrY_T0001647:7;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21353684	21353856	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=exon:HG003_chrY_T0001647:8;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21353857	21394484	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=intron:HG003_chrY_T0001647:8;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21394485	21394608	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=exon:HG003_chrY_T0001647:9;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21394609	21404522	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=intron:HG003_chrY_T0001647:9;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404779	.	-	.	source_transcript=ENST00000662223.1;source_transcript_name=TTTY10-209;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000662223.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662223.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000662223.1,ENST00000662223.1;transcript_id=HG003_chrY_T0001647;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001647;transcript_name=HG003_chrY_T0001647;gene_name=TTTY10;ID=exon:HG003_chrY_T0001647:10;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21294791	21404673	1000	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=HG003_chrY_T0001648;Name=TTTY10
HG003_chrY	CAT	exon	21294791	21295249	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=exon:HG003_chrY_T0001648:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21295250	21295854	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=intron:HG003_chrY_T0001648:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21295855	21296094	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=exon:HG003_chrY_T0001648:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21296095	21297615	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=intron:HG003_chrY_T0001648:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21297616	21297675	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=exon:HG003_chrY_T0001648:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21297676	21336767	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=intron:HG003_chrY_T0001648:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21336768	21336872	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=exon:HG003_chrY_T0001648:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21350547	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=intron:HG003_chrY_T0001648:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21350548	21350716	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=exon:HG003_chrY_T0001648:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21350717	21353683	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=intron:HG003_chrY_T0001648:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21353684	21353856	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=exon:HG003_chrY_T0001648:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21353857	21404522	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=intron:HG003_chrY_T0001648:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404673	.	-	.	source_transcript=ENST00000658891.1;source_transcript_name=TTTY10-205;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000658891.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000658891.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000658891.1,ENST00000658891.1;transcript_id=HG003_chrY_T0001648;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001648;transcript_name=HG003_chrY_T0001648;gene_name=TTTY10;ID=exon:HG003_chrY_T0001648:6;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21295095	21348644	1000	-	.	source_transcript=ENST00000455084.1;source_transcript_name=TTTY10-201;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455084.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455084.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000455084.1,ENST00000455084.1;transcript_id=HG003_chrY_T0001649;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001649;gene_name=TTTY10;ID=HG003_chrY_T0001649;Name=TTTY10
HG003_chrY	CAT	exon	21295095	21295249	.	-	.	source_transcript=ENST00000455084.1;source_transcript_name=TTTY10-201;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455084.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455084.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000455084.1,ENST00000455084.1;transcript_id=HG003_chrY_T0001649;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001649;transcript_name=HG003_chrY_T0001649;gene_name=TTTY10;ID=exon:HG003_chrY_T0001649:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21295250	21295854	.	-	.	source_transcript=ENST00000455084.1;source_transcript_name=TTTY10-201;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455084.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455084.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000455084.1,ENST00000455084.1;transcript_id=HG003_chrY_T0001649;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001649;transcript_name=HG003_chrY_T0001649;gene_name=TTTY10;ID=intron:HG003_chrY_T0001649:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21295855	21296094	.	-	.	source_transcript=ENST00000455084.1;source_transcript_name=TTTY10-201;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455084.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455084.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000455084.1,ENST00000455084.1;transcript_id=HG003_chrY_T0001649;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001649;transcript_name=HG003_chrY_T0001649;gene_name=TTTY10;ID=exon:HG003_chrY_T0001649:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21296095	21297615	.	-	.	source_transcript=ENST00000455084.1;source_transcript_name=TTTY10-201;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455084.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455084.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000455084.1,ENST00000455084.1;transcript_id=HG003_chrY_T0001649;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001649;transcript_name=HG003_chrY_T0001649;gene_name=TTTY10;ID=intron:HG003_chrY_T0001649:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21297616	21297675	.	-	.	source_transcript=ENST00000455084.1;source_transcript_name=TTTY10-201;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455084.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455084.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000455084.1,ENST00000455084.1;transcript_id=HG003_chrY_T0001649;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001649;transcript_name=HG003_chrY_T0001649;gene_name=TTTY10;ID=exon:HG003_chrY_T0001649:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21297676	21299298	.	-	.	source_transcript=ENST00000455084.1;source_transcript_name=TTTY10-201;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455084.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455084.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000455084.1,ENST00000455084.1;transcript_id=HG003_chrY_T0001649;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001649;transcript_name=HG003_chrY_T0001649;gene_name=TTTY10;ID=intron:HG003_chrY_T0001649:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21299299	21299408	.	-	.	source_transcript=ENST00000455084.1;source_transcript_name=TTTY10-201;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455084.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455084.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000455084.1,ENST00000455084.1;transcript_id=HG003_chrY_T0001649;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001649;transcript_name=HG003_chrY_T0001649;gene_name=TTTY10;ID=exon:HG003_chrY_T0001649:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21299409	21336767	.	-	.	source_transcript=ENST00000455084.1;source_transcript_name=TTTY10-201;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455084.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455084.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000455084.1,ENST00000455084.1;transcript_id=HG003_chrY_T0001649;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001649;transcript_name=HG003_chrY_T0001649;gene_name=TTTY10;ID=intron:HG003_chrY_T0001649:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21336768	21336872	.	-	.	source_transcript=ENST00000455084.1;source_transcript_name=TTTY10-201;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455084.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455084.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000455084.1,ENST00000455084.1;transcript_id=HG003_chrY_T0001649;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001649;transcript_name=HG003_chrY_T0001649;gene_name=TTTY10;ID=exon:HG003_chrY_T0001649:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21347686	.	-	.	source_transcript=ENST00000455084.1;source_transcript_name=TTTY10-201;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455084.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455084.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000455084.1,ENST00000455084.1;transcript_id=HG003_chrY_T0001649;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001649;transcript_name=HG003_chrY_T0001649;gene_name=TTTY10;ID=intron:HG003_chrY_T0001649:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21347687	21348644	.	-	.	source_transcript=ENST00000455084.1;source_transcript_name=TTTY10-201;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000455084.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000455084.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000455084.1,ENST00000455084.1;transcript_id=HG003_chrY_T0001649;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001649;transcript_name=HG003_chrY_T0001649;gene_name=TTTY10;ID=exon:HG003_chrY_T0001649:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21295602	21404908	1000	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=HG003_chrY_T0001650;Name=TTTY10
HG003_chrY	CAT	exon	21295602	21296094	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=exon:HG003_chrY_T0001650:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21296095	21297615	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=intron:HG003_chrY_T0001650:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21297616	21297675	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=exon:HG003_chrY_T0001650:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21297676	21299298	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=intron:HG003_chrY_T0001650:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21299299	21299408	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=exon:HG003_chrY_T0001650:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21299409	21336767	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=intron:HG003_chrY_T0001650:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21336768	21336872	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=exon:HG003_chrY_T0001650:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21347686	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=intron:HG003_chrY_T0001650:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21347687	21347745	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=exon:HG003_chrY_T0001650:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21347746	21348303	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=intron:HG003_chrY_T0001650:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21348304	21348416	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=exon:HG003_chrY_T0001650:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21348417	21350547	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=intron:HG003_chrY_T0001650:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21350548	21350716	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=exon:HG003_chrY_T0001650:6;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21350717	21353683	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=intron:HG003_chrY_T0001650:6;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21353684	21353856	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=exon:HG003_chrY_T0001650:7;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21353857	21404522	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=intron:HG003_chrY_T0001650:7;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404908	.	-	.	source_transcript=ENST00000651837.1;source_transcript_name=TTTY10-202;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651837.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651837.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000651837.1,ENST00000651837.1;transcript_id=HG003_chrY_T0001650;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001650;transcript_name=HG003_chrY_T0001650;gene_name=TTTY10;ID=exon:HG003_chrY_T0001650:8;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21295919	21300571	1000	-	.	source_transcript=ENST00000654569.1;source_transcript_name=TTTY10-203;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000654569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000654569.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000654569.1,ENST00000654569.1;transcript_id=HG003_chrY_T0001651;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001651;gene_name=TTTY10;ID=HG003_chrY_T0001651;Name=TTTY10
HG003_chrY	CAT	exon	21295919	21296094	.	-	.	source_transcript=ENST00000654569.1;source_transcript_name=TTTY10-203;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000654569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000654569.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000654569.1,ENST00000654569.1;transcript_id=HG003_chrY_T0001651;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001651;transcript_name=HG003_chrY_T0001651;gene_name=TTTY10;ID=exon:HG003_chrY_T0001651:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21296095	21297615	.	-	.	source_transcript=ENST00000654569.1;source_transcript_name=TTTY10-203;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000654569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000654569.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000654569.1,ENST00000654569.1;transcript_id=HG003_chrY_T0001651;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001651;transcript_name=HG003_chrY_T0001651;gene_name=TTTY10;ID=intron:HG003_chrY_T0001651:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21297616	21297675	.	-	.	source_transcript=ENST00000654569.1;source_transcript_name=TTTY10-203;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000654569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000654569.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000654569.1,ENST00000654569.1;transcript_id=HG003_chrY_T0001651;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001651;transcript_name=HG003_chrY_T0001651;gene_name=TTTY10;ID=exon:HG003_chrY_T0001651:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21297676	21299298	.	-	.	source_transcript=ENST00000654569.1;source_transcript_name=TTTY10-203;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000654569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000654569.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000654569.1,ENST00000654569.1;transcript_id=HG003_chrY_T0001651;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001651;transcript_name=HG003_chrY_T0001651;gene_name=TTTY10;ID=intron:HG003_chrY_T0001651:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21299299	21299408	.	-	.	source_transcript=ENST00000654569.1;source_transcript_name=TTTY10-203;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000654569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000654569.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000654569.1,ENST00000654569.1;transcript_id=HG003_chrY_T0001651;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001651;transcript_name=HG003_chrY_T0001651;gene_name=TTTY10;ID=exon:HG003_chrY_T0001651:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21299409	21300187	.	-	.	source_transcript=ENST00000654569.1;source_transcript_name=TTTY10-203;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000654569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000654569.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000654569.1,ENST00000654569.1;transcript_id=HG003_chrY_T0001651;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001651;transcript_name=HG003_chrY_T0001651;gene_name=TTTY10;ID=intron:HG003_chrY_T0001651:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21300188	21300571	.	-	.	source_transcript=ENST00000654569.1;source_transcript_name=TTTY10-203;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000654569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000654569.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000654569.1,ENST00000654569.1;transcript_id=HG003_chrY_T0001651;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001651;transcript_name=HG003_chrY_T0001651;gene_name=TTTY10;ID=exon:HG003_chrY_T0001651:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21332625	21404748	1000	-	.	source_transcript=ENST00000667496.1;source_transcript_name=TTTY10-212;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000667496.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000667496.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000667496.1,ENST00000667496.1;transcript_id=HG003_chrY_T0001652;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001652;gene_name=TTTY10;ID=HG003_chrY_T0001652;Name=TTTY10
HG003_chrY	CAT	exon	21332625	21336872	.	-	.	source_transcript=ENST00000667496.1;source_transcript_name=TTTY10-212;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000667496.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000667496.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000667496.1,ENST00000667496.1;transcript_id=HG003_chrY_T0001652;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001652;transcript_name=HG003_chrY_T0001652;gene_name=TTTY10;ID=exon:HG003_chrY_T0001652:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21404522	.	-	.	source_transcript=ENST00000667496.1;source_transcript_name=TTTY10-212;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000667496.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000667496.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000667496.1,ENST00000667496.1;transcript_id=HG003_chrY_T0001652;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001652;transcript_name=HG003_chrY_T0001652;gene_name=TTTY10;ID=intron:HG003_chrY_T0001652:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404748	.	-	.	source_transcript=ENST00000667496.1;source_transcript_name=TTTY10-212;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000667496.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000667496.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000667496.1,ENST00000667496.1;transcript_id=HG003_chrY_T0001652;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001652;transcript_name=HG003_chrY_T0001652;gene_name=TTTY10;ID=exon:HG003_chrY_T0001652:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21333892	21348272	1000	-	.	source_transcript=ENST00000659275.1;source_transcript_name=TTTY10-206;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000659275.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000659275.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000659275.1,ENST00000659275.1;transcript_id=HG003_chrY_T0001653;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001653;gene_name=TTTY10;ID=HG003_chrY_T0001653;Name=TTTY10
HG003_chrY	CAT	exon	21333892	21336872	.	-	.	source_transcript=ENST00000659275.1;source_transcript_name=TTTY10-206;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000659275.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000659275.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000659275.1,ENST00000659275.1;transcript_id=HG003_chrY_T0001653;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001653;transcript_name=HG003_chrY_T0001653;gene_name=TTTY10;ID=exon:HG003_chrY_T0001653:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21347686	.	-	.	source_transcript=ENST00000659275.1;source_transcript_name=TTTY10-206;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000659275.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000659275.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000659275.1,ENST00000659275.1;transcript_id=HG003_chrY_T0001653;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001653;transcript_name=HG003_chrY_T0001653;gene_name=TTTY10;ID=intron:HG003_chrY_T0001653:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21347687	21348272	.	-	.	source_transcript=ENST00000659275.1;source_transcript_name=TTTY10-206;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000659275.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000659275.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000659275.1,ENST00000659275.1;transcript_id=HG003_chrY_T0001653;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001653;transcript_name=HG003_chrY_T0001653;gene_name=TTTY10;ID=exon:HG003_chrY_T0001653:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21336183	21404562	1000	-	.	source_transcript=ENST00000755216.1;source_transcript_name=TTTY10-214;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755216.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755216.1,ENST00000755216.1;transcript_id=HG003_chrY_T0001654;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001654;gene_name=TTTY10;ID=HG003_chrY_T0001654;Name=TTTY10
HG003_chrY	CAT	exon	21336183	21336872	.	-	.	source_transcript=ENST00000755216.1;source_transcript_name=TTTY10-214;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755216.1,ENST00000755216.1;transcript_id=HG003_chrY_T0001654;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001654;transcript_name=HG003_chrY_T0001654;gene_name=TTTY10;ID=exon:HG003_chrY_T0001654:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21348451	.	-	.	source_transcript=ENST00000755216.1;source_transcript_name=TTTY10-214;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755216.1,ENST00000755216.1;transcript_id=HG003_chrY_T0001654;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001654;transcript_name=HG003_chrY_T0001654;gene_name=TTTY10;ID=intron:HG003_chrY_T0001654:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21348452	21348649	.	-	.	source_transcript=ENST00000755216.1;source_transcript_name=TTTY10-214;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755216.1,ENST00000755216.1;transcript_id=HG003_chrY_T0001654;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001654;transcript_name=HG003_chrY_T0001654;gene_name=TTTY10;ID=exon:HG003_chrY_T0001654:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21348650	21350547	.	-	.	source_transcript=ENST00000755216.1;source_transcript_name=TTTY10-214;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755216.1,ENST00000755216.1;transcript_id=HG003_chrY_T0001654;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001654;transcript_name=HG003_chrY_T0001654;gene_name=TTTY10;ID=intron:HG003_chrY_T0001654:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21350548	21350716	.	-	.	source_transcript=ENST00000755216.1;source_transcript_name=TTTY10-214;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755216.1,ENST00000755216.1;transcript_id=HG003_chrY_T0001654;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001654;transcript_name=HG003_chrY_T0001654;gene_name=TTTY10;ID=exon:HG003_chrY_T0001654:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21350717	21353683	.	-	.	source_transcript=ENST00000755216.1;source_transcript_name=TTTY10-214;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755216.1,ENST00000755216.1;transcript_id=HG003_chrY_T0001654;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001654;transcript_name=HG003_chrY_T0001654;gene_name=TTTY10;ID=intron:HG003_chrY_T0001654:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21353684	21353856	.	-	.	source_transcript=ENST00000755216.1;source_transcript_name=TTTY10-214;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755216.1,ENST00000755216.1;transcript_id=HG003_chrY_T0001654;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001654;transcript_name=HG003_chrY_T0001654;gene_name=TTTY10;ID=exon:HG003_chrY_T0001654:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21353857	21404522	.	-	.	source_transcript=ENST00000755216.1;source_transcript_name=TTTY10-214;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755216.1,ENST00000755216.1;transcript_id=HG003_chrY_T0001654;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001654;transcript_name=HG003_chrY_T0001654;gene_name=TTTY10;ID=intron:HG003_chrY_T0001654:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404562	.	-	.	source_transcript=ENST00000755216.1;source_transcript_name=TTTY10-214;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755216.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755216.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755216.1,ENST00000755216.1;transcript_id=HG003_chrY_T0001654;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001654;transcript_name=HG003_chrY_T0001654;gene_name=TTTY10;ID=exon:HG003_chrY_T0001654:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21336185	21404936	1000	-	.	source_transcript=ENST00000666666.1;source_transcript_name=TTTY10-210;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000666666.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666666.1,ENST00000666666.1;transcript_id=HG003_chrY_T0001655;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001655;gene_name=TTTY10;ID=HG003_chrY_T0001655;Name=TTTY10
HG003_chrY	CAT	exon	21336185	21336872	.	-	.	source_transcript=ENST00000666666.1;source_transcript_name=TTTY10-210;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000666666.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666666.1,ENST00000666666.1;transcript_id=HG003_chrY_T0001655;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001655;transcript_name=HG003_chrY_T0001655;gene_name=TTTY10;ID=exon:HG003_chrY_T0001655:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21348451	.	-	.	source_transcript=ENST00000666666.1;source_transcript_name=TTTY10-210;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000666666.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666666.1,ENST00000666666.1;transcript_id=HG003_chrY_T0001655;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001655;transcript_name=HG003_chrY_T0001655;gene_name=TTTY10;ID=intron:HG003_chrY_T0001655:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21348452	21348649	.	-	.	source_transcript=ENST00000666666.1;source_transcript_name=TTTY10-210;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000666666.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666666.1,ENST00000666666.1;transcript_id=HG003_chrY_T0001655;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001655;transcript_name=HG003_chrY_T0001655;gene_name=TTTY10;ID=exon:HG003_chrY_T0001655:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21348650	21350547	.	-	.	source_transcript=ENST00000666666.1;source_transcript_name=TTTY10-210;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000666666.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666666.1,ENST00000666666.1;transcript_id=HG003_chrY_T0001655;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001655;transcript_name=HG003_chrY_T0001655;gene_name=TTTY10;ID=intron:HG003_chrY_T0001655:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21350548	21350716	.	-	.	source_transcript=ENST00000666666.1;source_transcript_name=TTTY10-210;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000666666.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666666.1,ENST00000666666.1;transcript_id=HG003_chrY_T0001655;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001655;transcript_name=HG003_chrY_T0001655;gene_name=TTTY10;ID=exon:HG003_chrY_T0001655:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21350717	21404522	.	-	.	source_transcript=ENST00000666666.1;source_transcript_name=TTTY10-210;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000666666.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666666.1,ENST00000666666.1;transcript_id=HG003_chrY_T0001655;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001655;transcript_name=HG003_chrY_T0001655;gene_name=TTTY10;ID=intron:HG003_chrY_T0001655:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404936	.	-	.	source_transcript=ENST00000666666.1;source_transcript_name=TTTY10-210;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000666666.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000666666.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000666666.1,ENST00000666666.1;transcript_id=HG003_chrY_T0001655;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001655;transcript_name=HG003_chrY_T0001655;gene_name=TTTY10;ID=exon:HG003_chrY_T0001655:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21336498	21404562	1000	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=HG003_chrY_T0001656;Name=TTTY10
HG003_chrY	CAT	exon	21336498	21336872	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=exon:HG003_chrY_T0001656:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21336873	21347686	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=intron:HG003_chrY_T0001656:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21347687	21347745	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=exon:HG003_chrY_T0001656:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21347746	21348303	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=intron:HG003_chrY_T0001656:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21348304	21348416	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=exon:HG003_chrY_T0001656:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21348417	21350547	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=intron:HG003_chrY_T0001656:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21350548	21350716	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=exon:HG003_chrY_T0001656:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21350717	21353683	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=intron:HG003_chrY_T0001656:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21353684	21353856	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=exon:HG003_chrY_T0001656:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21353857	21356610	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=intron:HG003_chrY_T0001656:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21356611	21356702	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=exon:HG003_chrY_T0001656:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21356703	21404522	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=intron:HG003_chrY_T0001656:5;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404562	.	-	.	source_transcript=ENST00000755217.1;source_transcript_name=TTTY10-215;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755217.1,ENST00000755217.1;transcript_id=HG003_chrY_T0001656;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001656;transcript_name=HG003_chrY_T0001656;gene_name=TTTY10;ID=exon:HG003_chrY_T0001656:6;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21348526	21404900	1000	-	.	source_transcript=ENST00000755218.1;source_transcript_name=TTTY10-216;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755218.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755218.1,ENST00000755218.1;transcript_id=HG003_chrY_T0001657;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001657;gene_name=TTTY10;ID=HG003_chrY_T0001657;Name=TTTY10
HG003_chrY	CAT	exon	21348526	21348649	.	-	.	source_transcript=ENST00000755218.1;source_transcript_name=TTTY10-216;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755218.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755218.1,ENST00000755218.1;transcript_id=HG003_chrY_T0001657;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001657;transcript_name=HG003_chrY_T0001657;gene_name=TTTY10;ID=exon:HG003_chrY_T0001657:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21348650	21350547	.	-	.	source_transcript=ENST00000755218.1;source_transcript_name=TTTY10-216;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755218.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755218.1,ENST00000755218.1;transcript_id=HG003_chrY_T0001657;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001657;transcript_name=HG003_chrY_T0001657;gene_name=TTTY10;ID=intron:HG003_chrY_T0001657:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21350548	21350716	.	-	.	source_transcript=ENST00000755218.1;source_transcript_name=TTTY10-216;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755218.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755218.1,ENST00000755218.1;transcript_id=HG003_chrY_T0001657;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001657;transcript_name=HG003_chrY_T0001657;gene_name=TTTY10;ID=exon:HG003_chrY_T0001657:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21350717	21353683	.	-	.	source_transcript=ENST00000755218.1;source_transcript_name=TTTY10-216;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755218.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755218.1,ENST00000755218.1;transcript_id=HG003_chrY_T0001657;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001657;transcript_name=HG003_chrY_T0001657;gene_name=TTTY10;ID=intron:HG003_chrY_T0001657:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21353684	21353856	.	-	.	source_transcript=ENST00000755218.1;source_transcript_name=TTTY10-216;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755218.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755218.1,ENST00000755218.1;transcript_id=HG003_chrY_T0001657;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001657;transcript_name=HG003_chrY_T0001657;gene_name=TTTY10;ID=exon:HG003_chrY_T0001657:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21353857	21356610	.	-	.	source_transcript=ENST00000755218.1;source_transcript_name=TTTY10-216;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755218.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755218.1,ENST00000755218.1;transcript_id=HG003_chrY_T0001657;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001657;transcript_name=HG003_chrY_T0001657;gene_name=TTTY10;ID=intron:HG003_chrY_T0001657:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21356611	21356702	.	-	.	source_transcript=ENST00000755218.1;source_transcript_name=TTTY10-216;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755218.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755218.1,ENST00000755218.1;transcript_id=HG003_chrY_T0001657;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001657;transcript_name=HG003_chrY_T0001657;gene_name=TTTY10;ID=exon:HG003_chrY_T0001657:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21356703	21404522	.	-	.	source_transcript=ENST00000755218.1;source_transcript_name=TTTY10-216;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755218.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755218.1,ENST00000755218.1;transcript_id=HG003_chrY_T0001657;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001657;transcript_name=HG003_chrY_T0001657;gene_name=TTTY10;ID=intron:HG003_chrY_T0001657:3;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404900	.	-	.	source_transcript=ENST00000755218.1;source_transcript_name=TTTY10-216;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755218.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755218.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755218.1,ENST00000755218.1;transcript_id=HG003_chrY_T0001657;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001657;transcript_name=HG003_chrY_T0001657;gene_name=TTTY10;ID=exon:HG003_chrY_T0001657:4;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21350128	21404914	1000	-	.	source_transcript=ENST00000755219.1;source_transcript_name=TTTY10-217;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755219.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755219.1,ENST00000755219.1;transcript_id=HG003_chrY_T0001658;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001658;gene_name=TTTY10;ID=HG003_chrY_T0001658;Name=TTTY10
HG003_chrY	CAT	exon	21350128	21350716	.	-	.	source_transcript=ENST00000755219.1;source_transcript_name=TTTY10-217;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755219.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755219.1,ENST00000755219.1;transcript_id=HG003_chrY_T0001658;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001658;transcript_name=HG003_chrY_T0001658;gene_name=TTTY10;ID=exon:HG003_chrY_T0001658:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21350717	21353683	.	-	.	source_transcript=ENST00000755219.1;source_transcript_name=TTTY10-217;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755219.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755219.1,ENST00000755219.1;transcript_id=HG003_chrY_T0001658;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001658;transcript_name=HG003_chrY_T0001658;gene_name=TTTY10;ID=intron:HG003_chrY_T0001658:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21353684	21353856	.	-	.	source_transcript=ENST00000755219.1;source_transcript_name=TTTY10-217;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755219.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755219.1,ENST00000755219.1;transcript_id=HG003_chrY_T0001658;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001658;transcript_name=HG003_chrY_T0001658;gene_name=TTTY10;ID=exon:HG003_chrY_T0001658:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21353857	21404522	.	-	.	source_transcript=ENST00000755219.1;source_transcript_name=TTTY10-217;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755219.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755219.1,ENST00000755219.1;transcript_id=HG003_chrY_T0001658;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001658;transcript_name=HG003_chrY_T0001658;gene_name=TTTY10;ID=intron:HG003_chrY_T0001658:1;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21404523	21404914	.	-	.	source_transcript=ENST00000755219.1;source_transcript_name=TTTY10-217;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755219.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755219.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755219.1,ENST00000755219.1;transcript_id=HG003_chrY_T0001658;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001658;transcript_name=HG003_chrY_T0001658;gene_name=TTTY10;ID=exon:HG003_chrY_T0001658:2;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21404349	21404900	1000	-	.	source_transcript=ENST00000755220.1;source_transcript_name=TTTY10-218;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755220.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755220.1,ENST00000755220.1;transcript_id=HG003_chrY_T0001660;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_G0000547;transcript_name=HG003_chrY_T0001660;gene_name=TTTY10;ID=HG003_chrY_T0001660;Name=TTTY10
HG003_chrY	CAT	exon	21404349	21404900	.	-	.	source_transcript=ENST00000755220.1;source_transcript_name=TTTY10-218;source_gene=ENSG00000229236.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000229236.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000755220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000755220.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY10;alternative_source_transcripts=ENST00000755220.1,ENST00000755220.1;transcript_id=HG003_chrY_T0001660;gene_id=HG003_chrY_G0000547;Parent=HG003_chrY_T0001660;transcript_name=HG003_chrY_T0001660;gene_name=TTTY10;ID=exon:HG003_chrY_T0001660:0;Name=TTTY10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21399639	21399936	.	-	.	source_gene_common_name=KDM5DP1;source_gene=ENSG00000277438.1;alternative_source_transcripts=ENST00000622542.1,ENST00000622542.1;gene_id=HG003_chrY_G0000548;gene_biotype=processed_pseudogene;gene_name=KDM5DP1;gene_sources=liftoff;ID=HG003_chrY_G0000548;Name=KDM5DP1
HG003_chrY	CAT	transcript	21399639	21399936	1000	-	.	source_transcript=ENST00000622542.1;source_transcript_name=KDM5DP1-201;source_gene=ENSG00000277438.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000277438.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000622542.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000622542.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5DP1;alternative_source_transcripts=ENST00000622542.1,ENST00000622542.1;transcript_id=HG003_chrY_T0001659;gene_id=HG003_chrY_G0000548;Parent=HG003_chrY_G0000548;transcript_name=HG003_chrY_T0001659;gene_name=KDM5DP1;ID=HG003_chrY_T0001659;Name=KDM5DP1
HG003_chrY	CAT	exon	21399639	21399936	.	-	.	source_transcript=ENST00000622542.1;source_transcript_name=KDM5DP1-201;source_gene=ENSG00000277438.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000277438.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000622542.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000622542.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=KDM5DP1;alternative_source_transcripts=ENST00000622542.1,ENST00000622542.1;transcript_id=HG003_chrY_T0001659;gene_id=HG003_chrY_G0000548;Parent=HG003_chrY_T0001659;transcript_name=HG003_chrY_T0001659;gene_name=KDM5DP1;ID=exon:HG003_chrY_T0001659:0;Name=KDM5DP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21405193	21422572	.	+	.	source_gene_common_name=EIF1AY;source_gene=ENSG00000198692.10;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;gene_id=HG003_chrY_G0000549;gene_biotype=protein_coding;gene_name=EIF1AY;gene_sources=liftoff;ID=HG003_chrY_G0000549;Name=EIF1AY
HG003_chrY	CAT	transcript	21405193	21422572	100	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_G0000549;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=HG003_chrY_T0001661;Name=EIF1AY
HG003_chrY	CAT	exon	21405193	21405304	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001661:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21405289	21405304	.	+	0	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001661:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	21405289	21405291	.	+	0	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=start_codon:HG003_chrY_T0001661;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21405305	21409024	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001661:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21409025	21409108	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001661:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21409025	21409108	.	+	2	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001661:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21409109	21412006	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001661:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21412007	21412110	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001661:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21412007	21412110	.	+	2	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001661:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21412111	21413891	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001661:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21413892	21413942	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001661:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21413892	21413942	.	+	0	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001661:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21413943	21417441	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001661:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21417442	21417523	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001661:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21417442	21417523	.	+	0	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001661:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21417524	21418901	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001661:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21418902	21418993	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001661:5;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21418902	21418993	.	+	2	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001661:5;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21418994	21421758	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001661:5;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21421759	21422572	.	+	.	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001661:6;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21421759	21421764	.	+	0	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001661:6;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	21421762	21421764	.	+	0	source_transcript=ENST00000361365.7;source_transcript_name=EIF1AY-201;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000361365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000361365.7,ENST00000361365.7;transcript_id=HG003_chrY_T0001661;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001661;transcript_name=HG003_chrY_T0001661;gene_name=EIF1AY;ID=stop_codon:HG003_chrY_T0001661;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21405195	21417947	1000	+	.	source_transcript=ENST00000465253.1;source_transcript_name=EIF1AY-204;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000465253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000465253.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000465253.1,ENST00000465253.1;transcript_id=HG003_chrY_T0001662;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_G0000549;transcript_name=HG003_chrY_T0001662;gene_name=EIF1AY;ID=HG003_chrY_T0001662;Name=EIF1AY
HG003_chrY	CAT	exon	21405195	21405304	.	+	.	source_transcript=ENST00000465253.1;source_transcript_name=EIF1AY-204;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000465253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000465253.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000465253.1,ENST00000465253.1;transcript_id=HG003_chrY_T0001662;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001662;transcript_name=HG003_chrY_T0001662;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001662:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21405305	21409024	.	+	.	source_transcript=ENST00000465253.1;source_transcript_name=EIF1AY-204;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000465253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000465253.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000465253.1,ENST00000465253.1;transcript_id=HG003_chrY_T0001662;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001662;transcript_name=HG003_chrY_T0001662;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001662:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21409025	21409108	.	+	.	source_transcript=ENST00000465253.1;source_transcript_name=EIF1AY-204;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000465253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000465253.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000465253.1,ENST00000465253.1;transcript_id=HG003_chrY_T0001662;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001662;transcript_name=HG003_chrY_T0001662;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001662:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21409109	21412006	.	+	.	source_transcript=ENST00000465253.1;source_transcript_name=EIF1AY-204;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000465253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000465253.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000465253.1,ENST00000465253.1;transcript_id=HG003_chrY_T0001662;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001662;transcript_name=HG003_chrY_T0001662;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001662:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21412007	21412110	.	+	.	source_transcript=ENST00000465253.1;source_transcript_name=EIF1AY-204;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000465253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000465253.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000465253.1,ENST00000465253.1;transcript_id=HG003_chrY_T0001662;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001662;transcript_name=HG003_chrY_T0001662;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001662:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21412111	21413891	.	+	.	source_transcript=ENST00000465253.1;source_transcript_name=EIF1AY-204;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000465253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000465253.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000465253.1,ENST00000465253.1;transcript_id=HG003_chrY_T0001662;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001662;transcript_name=HG003_chrY_T0001662;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001662:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21413892	21413942	.	+	.	source_transcript=ENST00000465253.1;source_transcript_name=EIF1AY-204;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000465253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000465253.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000465253.1,ENST00000465253.1;transcript_id=HG003_chrY_T0001662;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001662;transcript_name=HG003_chrY_T0001662;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001662:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21413943	21417441	.	+	.	source_transcript=ENST00000465253.1;source_transcript_name=EIF1AY-204;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000465253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000465253.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000465253.1,ENST00000465253.1;transcript_id=HG003_chrY_T0001662;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001662;transcript_name=HG003_chrY_T0001662;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001662:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21417442	21417947	.	+	.	source_transcript=ENST00000465253.1;source_transcript_name=EIF1AY-204;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000465253.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000465253.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000465253.1,ENST00000465253.1;transcript_id=HG003_chrY_T0001662;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001662;transcript_name=HG003_chrY_T0001662;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001662:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21405211	21422048	100	+	.	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_G0000549;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=HG003_chrY_T0001663;Name=EIF1AY
HG003_chrY	CAT	exon	21405211	21405304	.	+	.	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001663:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21405289	21405304	.	+	0	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001663:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	21405289	21405291	.	+	0	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=start_codon:HG003_chrY_T0001663;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21405305	21409024	.	+	.	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001663:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21409025	21409108	.	+	.	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001663:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21409025	21409108	.	+	2	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001663:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21409109	21412006	.	+	.	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001663:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21412007	21412110	.	+	.	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001663:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21412007	21412110	.	+	2	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001663:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21412111	21417441	.	+	.	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001663:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21417442	21417523	.	+	.	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001663:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21417442	21417523	.	+	0	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001663:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21417524	21418901	.	+	.	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001663:3;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21418902	21418993	.	+	.	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001663:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21418902	21418993	.	+	2	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001663:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21418994	21421758	.	+	.	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001663:4;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21421759	21422048	.	+	.	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001663:5;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21421759	21421764	.	+	0	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=CDS:HG003_chrY_T0001663:5;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	21421762	21421764	.	+	0	source_transcript=ENST00000382772.3;source_transcript_name=EIF1AY-202;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382772.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000382772.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000382772.3,ENST00000382772.3;transcript_id=HG003_chrY_T0001663;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001663;transcript_name=HG003_chrY_T0001663;gene_name=EIF1AY;ID=stop_codon:HG003_chrY_T0001663;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21416136	21422048	1000	+	.	source_transcript=ENST00000464196.5;source_transcript_name=EIF1AY-203;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000464196.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000464196.5;transcript_score=299.93600000000004;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000464196.5,ENST00000464196.5;transcript_id=HG003_chrY_T0001664;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_G0000549;transcript_name=HG003_chrY_T0001664;gene_name=EIF1AY;ID=HG003_chrY_T0001664;Name=EIF1AY
HG003_chrY	CAT	exon	21416136	21418993	.	+	.	source_transcript=ENST00000464196.5;source_transcript_name=EIF1AY-203;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000464196.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000464196.5;transcript_score=299.93600000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000464196.5,ENST00000464196.5;transcript_id=HG003_chrY_T0001664;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001664;transcript_name=HG003_chrY_T0001664;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001664:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21418994	21421758	.	+	.	source_transcript=ENST00000464196.5;source_transcript_name=EIF1AY-203;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000464196.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000464196.5;transcript_score=299.93600000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000464196.5,ENST00000464196.5;transcript_id=HG003_chrY_T0001664;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001664;transcript_name=HG003_chrY_T0001664;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001664:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21421759	21422048	.	+	.	source_transcript=ENST00000464196.5;source_transcript_name=EIF1AY-203;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000464196.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000464196.5;transcript_score=299.93600000000004;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000464196.5,ENST00000464196.5;transcript_id=HG003_chrY_T0001664;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001664;transcript_name=HG003_chrY_T0001664;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001664:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21417265	21422048	1000	+	.	source_transcript=ENST00000485584.1;source_transcript_name=EIF1AY-205;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000485584.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000485584.1;transcript_score=299.844;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000485584.1,ENST00000485584.1;transcript_id=HG003_chrY_T0001665;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_G0000549;transcript_name=HG003_chrY_T0001665;gene_name=EIF1AY;ID=HG003_chrY_T0001665;Name=EIF1AY
HG003_chrY	CAT	exon	21417265	21417523	.	+	.	source_transcript=ENST00000485584.1;source_transcript_name=EIF1AY-205;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000485584.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000485584.1;transcript_score=299.844;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000485584.1,ENST00000485584.1;transcript_id=HG003_chrY_T0001665;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001665;transcript_name=HG003_chrY_T0001665;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001665:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21417524	21418901	.	+	.	source_transcript=ENST00000485584.1;source_transcript_name=EIF1AY-205;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000485584.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000485584.1;transcript_score=299.844;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000485584.1,ENST00000485584.1;transcript_id=HG003_chrY_T0001665;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001665;transcript_name=HG003_chrY_T0001665;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001665:0;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21418902	21418993	.	+	.	source_transcript=ENST00000485584.1;source_transcript_name=EIF1AY-205;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000485584.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000485584.1;transcript_score=299.844;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000485584.1,ENST00000485584.1;transcript_id=HG003_chrY_T0001665;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001665;transcript_name=HG003_chrY_T0001665;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001665:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21418994	21421758	.	+	.	source_transcript=ENST00000485584.1;source_transcript_name=EIF1AY-205;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000485584.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000485584.1;transcript_score=299.844;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000485584.1,ENST00000485584.1;transcript_id=HG003_chrY_T0001665;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001665;transcript_name=HG003_chrY_T0001665;gene_name=EIF1AY;ID=intron:HG003_chrY_T0001665:1;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21421759	21422048	.	+	.	source_transcript=ENST00000485584.1;source_transcript_name=EIF1AY-205;source_gene=ENSG00000198692.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000198692.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000485584.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000485584.1;transcript_score=299.844;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=EIF1AY;alternative_source_transcripts=ENST00000485584.1,ENST00000485584.1;transcript_id=HG003_chrY_T0001665;gene_id=HG003_chrY_G0000549;Parent=HG003_chrY_T0001665;transcript_name=HG003_chrY_T0001665;gene_name=EIF1AY;ID=exon:HG003_chrY_T0001665:2;Name=EIF1AY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21554765	21563956	.	-	.	source_gene_common_name=ENSG00000286247;source_gene=ENSG00000286247.2;alternative_source_transcripts=ENST00000651369.1,ENST00000651369.1;gene_id=HG003_chrY_G0000550;gene_biotype=lncRNA;gene_name=ENSG00000286247;gene_sources=liftoff;ID=HG003_chrY_G0000550;Name=ENSG00000286247
HG003_chrY	CAT	transcript	21554765	21563956	1000	-	.	source_transcript=ENST00000651369.1;source_transcript_name=ENST00000651369;source_gene=ENSG00000286247.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286247.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651369.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651369.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286247;alternative_source_transcripts=ENST00000651369.1,ENST00000651369.1;transcript_id=HG003_chrY_T0001666;gene_id=HG003_chrY_G0000550;Parent=HG003_chrY_G0000550;transcript_name=HG003_chrY_T0001666;gene_name=ENSG00000286247;ID=HG003_chrY_T0001666;Name=ENSG00000286247
HG003_chrY	CAT	exon	21554765	21555531	.	-	.	source_transcript=ENST00000651369.1;source_transcript_name=ENST00000651369;source_gene=ENSG00000286247.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286247.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651369.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651369.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286247;alternative_source_transcripts=ENST00000651369.1,ENST00000651369.1;transcript_id=HG003_chrY_T0001666;gene_id=HG003_chrY_G0000550;Parent=HG003_chrY_T0001666;transcript_name=HG003_chrY_T0001666;gene_name=ENSG00000286247;ID=exon:HG003_chrY_T0001666:0;Name=ENSG00000286247;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21555532	21563898	.	-	.	source_transcript=ENST00000651369.1;source_transcript_name=ENST00000651369;source_gene=ENSG00000286247.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286247.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651369.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651369.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286247;alternative_source_transcripts=ENST00000651369.1,ENST00000651369.1;transcript_id=HG003_chrY_T0001666;gene_id=HG003_chrY_G0000550;Parent=HG003_chrY_T0001666;transcript_name=HG003_chrY_T0001666;gene_name=ENSG00000286247;ID=intron:HG003_chrY_T0001666:0;Name=ENSG00000286247;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21563899	21563956	.	-	.	source_transcript=ENST00000651369.1;source_transcript_name=ENST00000651369;source_gene=ENSG00000286247.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286247.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651369.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000651369.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286247;alternative_source_transcripts=ENST00000651369.1,ENST00000651369.1;transcript_id=HG003_chrY_T0001666;gene_id=HG003_chrY_G0000550;Parent=HG003_chrY_T0001666;transcript_name=HG003_chrY_T0001666;gene_name=ENSG00000286247;ID=exon:HG003_chrY_T0001666:1;Name=ENSG00000286247;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21555236	21556714	1000	-	.	source_transcript=ENST00000840781.1;source_transcript_name=ENST00000840781;source_gene=ENSG00000286247.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286247.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840781.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286247;alternative_source_transcripts=ENST00000840781.1,ENST00000840781.1;transcript_id=HG003_chrY_T0001667;gene_id=HG003_chrY_G0000550;Parent=HG003_chrY_G0000550;transcript_name=HG003_chrY_T0001667;gene_name=ENSG00000286247;ID=HG003_chrY_T0001667;Name=ENSG00000286247
HG003_chrY	CAT	exon	21555236	21555531	.	-	.	source_transcript=ENST00000840781.1;source_transcript_name=ENST00000840781;source_gene=ENSG00000286247.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286247.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840781.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286247;alternative_source_transcripts=ENST00000840781.1,ENST00000840781.1;transcript_id=HG003_chrY_T0001667;gene_id=HG003_chrY_G0000550;Parent=HG003_chrY_T0001667;transcript_name=HG003_chrY_T0001667;gene_name=ENSG00000286247;ID=exon:HG003_chrY_T0001667:0;Name=ENSG00000286247;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21555532	21556640	.	-	.	source_transcript=ENST00000840781.1;source_transcript_name=ENST00000840781;source_gene=ENSG00000286247.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286247.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840781.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286247;alternative_source_transcripts=ENST00000840781.1,ENST00000840781.1;transcript_id=HG003_chrY_T0001667;gene_id=HG003_chrY_G0000550;Parent=HG003_chrY_T0001667;transcript_name=HG003_chrY_T0001667;gene_name=ENSG00000286247;ID=intron:HG003_chrY_T0001667:0;Name=ENSG00000286247;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21556641	21556714	.	-	.	source_transcript=ENST00000840781.1;source_transcript_name=ENST00000840781;source_gene=ENSG00000286247.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286247.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000840781.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000840781.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286247;alternative_source_transcripts=ENST00000840781.1,ENST00000840781.1;transcript_id=HG003_chrY_T0001667;gene_id=HG003_chrY_G0000550;Parent=HG003_chrY_T0001667;transcript_name=HG003_chrY_T0001667;gene_name=ENSG00000286247;ID=exon:HG003_chrY_T0001667:1;Name=ENSG00000286247;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21556688	21572330	.	+	.	source_gene_common_name=TBL1YP1;source_gene=ENSG00000225624.1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;gene_id=HG003_chrY_G0000551;gene_biotype=unprocessed_pseudogene;gene_name=TBL1YP1;gene_sources=liftoff;ID=HG003_chrY_G0000551;Name=TBL1YP1
HG003_chrY	CAT	transcript	21556688	21572330	1000	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_G0000551;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=HG003_chrY_T0001668;Name=TBL1YP1
HG003_chrY	CAT	exon	21556688	21556931	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=exon:HG003_chrY_T0001668:0;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21556932	21558834	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=intron:HG003_chrY_T0001668:0;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21558835	21558965	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=exon:HG003_chrY_T0001668:1;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21558966	21559356	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=intron:HG003_chrY_T0001668:1;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21559357	21559504	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=exon:HG003_chrY_T0001668:2;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21559505	21560202	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=intron:HG003_chrY_T0001668:2;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21560203	21560266	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=exon:HG003_chrY_T0001668:3;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21560267	21560375	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=intron:HG003_chrY_T0001668:3;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21560376	21560474	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=exon:HG003_chrY_T0001668:4;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21560475	21563512	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=intron:HG003_chrY_T0001668:4;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21563513	21563580	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=exon:HG003_chrY_T0001668:5;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21563581	21570329	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=intron:HG003_chrY_T0001668:5;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21570330	21570403	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=exon:HG003_chrY_T0001668:6;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21570404	21570740	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=intron:HG003_chrY_T0001668:6;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21570741	21570865	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=exon:HG003_chrY_T0001668:7;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21570866	21572257	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=intron:HG003_chrY_T0001668:7;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21572258	21572330	.	+	.	source_transcript=ENST00000440297.1;source_transcript_name=TBL1YP1-201;source_gene=ENSG00000225624.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225624.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TBL1YP1;alternative_source_transcripts=ENST00000440297.1,ENST00000440297.1;transcript_id=HG003_chrY_T0001668;gene_id=HG003_chrY_G0000551;Parent=HG003_chrY_T0001668;transcript_name=HG003_chrY_T0001668;gene_name=TBL1YP1;ID=exon:HG003_chrY_T0001668:8;Name=TBL1YP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21585539	21610464	.	+	.	source_gene_common_name=RPS4Y2;source_gene=ENSG00000280969.2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;gene_id=HG003_chrY_G0000552;gene_biotype=protein_coding;gene_name=RPS4Y2;gene_sources=liftoff;ID=HG003_chrY_G0000552;Name=RPS4Y2
HG003_chrY	CAT	transcript	21585539	21610464	100	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_G0000552;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=HG003_chrY_T0001669;Name=RPS4Y2
HG003_chrY	CAT	exon	21585539	21585597	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0001669:0;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21585595	21585597	.	+	0	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0001669:0;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	21585595	21585597	.	+	0	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=start_codon:HG003_chrY_T0001669;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21585598	21586208	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=intron:HG003_chrY_T0001669:0;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21586209	21586286	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0001669:1;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21586209	21586286	.	+	0	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0001669:1;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21586287	21589299	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=intron:HG003_chrY_T0001669:1;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21589300	21589480	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0001669:2;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21589300	21589480	.	+	0	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0001669:2;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21589481	21590715	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=intron:HG003_chrY_T0001669:2;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21590716	21590813	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0001669:3;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21590716	21590813	.	+	2	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0001669:3;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21590814	21598236	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=intron:HG003_chrY_T0001669:3;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21598237	21598408	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0001669:4;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21598237	21598408	.	+	0	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0001669:4;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21598409	21608940	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=intron:HG003_chrY_T0001669:4;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21608941	21609098	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0001669:5;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21608941	21609098	.	+	2	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0001669:5;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21609099	21610362	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=intron:HG003_chrY_T0001669:5;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21610363	21610464	.	+	.	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=exon:HG003_chrY_T0001669:6;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	21610363	21610464	.	+	0	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=CDS:HG003_chrY_T0001669:6;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	21610462	21610464	.	+	0	source_transcript=ENST00000629237.2;source_transcript_name=RPS4Y2-201;source_gene=ENSG00000280969.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000280969.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000629237.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000629237.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RPS4Y2;alternative_source_transcripts=ENST00000629237.2,ENST00000629237.2;transcript_id=HG003_chrY_T0001669;gene_id=HG003_chrY_G0000552;Parent=HG003_chrY_T0001669;transcript_name=HG003_chrY_T0001669;gene_name=RPS4Y2;ID=stop_codon:HG003_chrY_T0001669;Name=RPS4Y2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21638207	21641240	.	-	.	source_gene_common_name=HSFY4P;source_gene=ENSG00000224482.1;alternative_source_transcripts=ENST00000415994.1,ENST00000415994.1;gene_id=HG003_chrY_G0000553;gene_biotype=unprocessed_pseudogene;gene_name=HSFY4P;gene_sources=liftoff;ID=HG003_chrY_G0000553;Name=HSFY4P
HG003_chrY	CAT	transcript	21638207	21641240	1000	-	.	source_transcript=ENST00000415994.1;source_transcript_name=HSFY4P-201;source_gene=ENSG00000224482.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224482.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000415994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415994.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY4P;alternative_source_transcripts=ENST00000415994.1,ENST00000415994.1;transcript_id=HG003_chrY_T0001670;gene_id=HG003_chrY_G0000553;Parent=HG003_chrY_G0000553;transcript_name=HG003_chrY_T0001670;gene_name=HSFY4P;ID=HG003_chrY_T0001670;Name=HSFY4P
HG003_chrY	CAT	exon	21638207	21638896	.	-	.	source_transcript=ENST00000415994.1;source_transcript_name=HSFY4P-201;source_gene=ENSG00000224482.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224482.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000415994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415994.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY4P;alternative_source_transcripts=ENST00000415994.1,ENST00000415994.1;transcript_id=HG003_chrY_T0001670;gene_id=HG003_chrY_G0000553;Parent=HG003_chrY_T0001670;transcript_name=HG003_chrY_T0001670;gene_name=HSFY4P;ID=exon:HG003_chrY_T0001670:0;Name=HSFY4P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21638897	21640749	.	-	.	source_transcript=ENST00000415994.1;source_transcript_name=HSFY4P-201;source_gene=ENSG00000224482.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224482.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000415994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415994.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY4P;alternative_source_transcripts=ENST00000415994.1,ENST00000415994.1;transcript_id=HG003_chrY_T0001670;gene_id=HG003_chrY_G0000553;Parent=HG003_chrY_T0001670;transcript_name=HG003_chrY_T0001670;gene_name=HSFY4P;ID=intron:HG003_chrY_T0001670:0;Name=HSFY4P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21640750	21641240	.	-	.	source_transcript=ENST00000415994.1;source_transcript_name=HSFY4P-201;source_gene=ENSG00000224482.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224482.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000415994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415994.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY4P;alternative_source_transcripts=ENST00000415994.1,ENST00000415994.1;transcript_id=HG003_chrY_T0001670;gene_id=HG003_chrY_G0000553;Parent=HG003_chrY_T0001670;transcript_name=HG003_chrY_T0001670;gene_name=HSFY4P;ID=exon:HG003_chrY_T0001670:1;Name=HSFY4P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21672697	21673151	.	-	.	source_gene_common_name=ENSG00000216844;source_gene=ENSG00000216844.1;alternative_source_transcripts=ENST00000406090.1,ENST00000406090.1;gene_id=HG003_chrY_G0000554;gene_biotype=processed_pseudogene;gene_name=ENSG00000216844;gene_sources=liftoff;ID=HG003_chrY_G0000554;Name=ENSG00000216844
HG003_chrY	CAT	transcript	21672697	21673151	1000	-	.	source_transcript=ENST00000406090.1;source_transcript_name=ENST00000406090;source_gene=ENSG00000216844.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000216844.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000406090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000406090.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000216844;alternative_source_transcripts=ENST00000406090.1,ENST00000406090.1;transcript_id=HG003_chrY_T0001671;gene_id=HG003_chrY_G0000554;Parent=HG003_chrY_G0000554;transcript_name=HG003_chrY_T0001671;gene_name=ENSG00000216844;ID=HG003_chrY_T0001671;Name=ENSG00000216844
HG003_chrY	CAT	exon	21672697	21673151	.	-	.	source_transcript=ENST00000406090.1;source_transcript_name=ENST00000406090;source_gene=ENSG00000216844.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000216844.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000406090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000406090.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000216844;alternative_source_transcripts=ENST00000406090.1,ENST00000406090.1;transcript_id=HG003_chrY_T0001671;gene_id=HG003_chrY_G0000554;Parent=HG003_chrY_T0001671;transcript_name=HG003_chrY_T0001671;gene_name=ENSG00000216844;ID=exon:HG003_chrY_T0001671:0;Name=ENSG00000216844;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21690778	21691778	.	+	.	source_gene_common_name=GAPDHP17;source_gene=ENSG00000229551.2;alternative_source_transcripts=ENST00000449858.2,ENST00000449858.2;gene_id=HG003_chrY_G0000555;gene_biotype=processed_pseudogene;gene_name=GAPDHP17;gene_sources=liftoff;ID=HG003_chrY_G0000555;Name=GAPDHP17
HG003_chrY	CAT	transcript	21690778	21691778	1000	+	.	source_transcript=ENST00000449858.2;source_transcript_name=GAPDHP17-201;source_gene=ENSG00000229551.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229551.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000449858.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000449858.2;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GAPDHP17;alternative_source_transcripts=ENST00000449858.2,ENST00000449858.2;transcript_id=HG003_chrY_T0001672;gene_id=HG003_chrY_G0000555;Parent=HG003_chrY_G0000555;transcript_name=HG003_chrY_T0001672;gene_name=GAPDHP17;ID=HG003_chrY_T0001672;Name=GAPDHP17
HG003_chrY	CAT	exon	21690778	21691778	.	+	.	source_transcript=ENST00000449858.2;source_transcript_name=GAPDHP17-201;source_gene=ENSG00000229551.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000229551.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000449858.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000449858.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GAPDHP17;alternative_source_transcripts=ENST00000449858.2,ENST00000449858.2;transcript_id=HG003_chrY_T0001672;gene_id=HG003_chrY_G0000555;Parent=HG003_chrY_T0001672;transcript_name=HG003_chrY_T0001672;gene_name=GAPDHP17;ID=exon:HG003_chrY_T0001672:0;Name=GAPDHP17;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21736783	21737001	.	-	.	source_gene_common_name=TMEM167AP1;source_gene=ENSG00000226504.1;alternative_source_transcripts=ENST00000423409.1,ENST00000423409.1;gene_id=HG003_chrY_G0000556;gene_biotype=processed_pseudogene;gene_name=TMEM167AP1;gene_sources=liftoff;ID=HG003_chrY_G0000556;Name=TMEM167AP1
HG003_chrY	CAT	transcript	21736783	21737001	1000	-	.	source_transcript=ENST00000423409.1;source_transcript_name=TMEM167AP1-201;source_gene=ENSG00000226504.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000226504.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000423409.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423409.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMEM167AP1;alternative_source_transcripts=ENST00000423409.1,ENST00000423409.1;transcript_id=HG003_chrY_T0001673;gene_id=HG003_chrY_G0000556;Parent=HG003_chrY_G0000556;transcript_name=HG003_chrY_T0001673;gene_name=TMEM167AP1;ID=HG003_chrY_T0001673;Name=TMEM167AP1
HG003_chrY	CAT	exon	21736783	21737001	.	-	.	source_transcript=ENST00000423409.1;source_transcript_name=TMEM167AP1-201;source_gene=ENSG00000226504.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000226504.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000423409.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423409.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TMEM167AP1;alternative_source_transcripts=ENST00000423409.1,ENST00000423409.1;transcript_id=HG003_chrY_T0001673;gene_id=HG003_chrY_G0000556;Parent=HG003_chrY_T0001673;transcript_name=HG003_chrY_T0001673;gene_name=TMEM167AP1;ID=exon:HG003_chrY_T0001673:0;Name=TMEM167AP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21860423	21866858	.	+	.	source_gene_common_name=ENSG00000254488;source_gene=ENSG00000254488.1;alternative_source_transcripts=ENST00000527562.1;gene_id=HG003_chrY_G0000557;gene_biotype=lncRNA;gene_name=ENSG00000254488;gene_sources=liftoff;ID=HG003_chrY_G0000557;Name=ENSG00000254488
HG003_chrY	CAT	transcript	21860423	21866858	1000	+	.	source_transcript=ENST00000527562.1;source_transcript_name=ENST00000527562;source_gene=ENSG00000254488.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000254488.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000527562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000527562.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000254488;alternative_source_transcripts=ENST00000527562.1;transcript_id=HG003_chrY_T0001674;gene_id=HG003_chrY_G0000557;Parent=HG003_chrY_G0000557;transcript_name=HG003_chrY_T0001674;gene_name=ENSG00000254488;ID=HG003_chrY_T0001674;Name=ENSG00000254488
HG003_chrY	CAT	exon	21860423	21860548	.	+	.	source_transcript=ENST00000527562.1;source_transcript_name=ENST00000527562;source_gene=ENSG00000254488.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000254488.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000527562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000527562.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000254488;alternative_source_transcripts=ENST00000527562.1;transcript_id=HG003_chrY_T0001674;gene_id=HG003_chrY_G0000557;Parent=HG003_chrY_T0001674;transcript_name=HG003_chrY_T0001674;gene_name=ENSG00000254488;ID=exon:HG003_chrY_T0001674:0;Name=ENSG00000254488;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21860549	21862777	.	+	.	source_transcript=ENST00000527562.1;source_transcript_name=ENST00000527562;source_gene=ENSG00000254488.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000254488.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000527562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000527562.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000254488;alternative_source_transcripts=ENST00000527562.1;transcript_id=HG003_chrY_T0001674;gene_id=HG003_chrY_G0000557;Parent=HG003_chrY_T0001674;transcript_name=HG003_chrY_T0001674;gene_name=ENSG00000254488;ID=intron:HG003_chrY_T0001674:0;Name=ENSG00000254488;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21862778	21862878	.	+	.	source_transcript=ENST00000527562.1;source_transcript_name=ENST00000527562;source_gene=ENSG00000254488.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000254488.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000527562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000527562.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000254488;alternative_source_transcripts=ENST00000527562.1;transcript_id=HG003_chrY_T0001674;gene_id=HG003_chrY_G0000557;Parent=HG003_chrY_T0001674;transcript_name=HG003_chrY_T0001674;gene_name=ENSG00000254488;ID=exon:HG003_chrY_T0001674:1;Name=ENSG00000254488;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21862879	21866102	.	+	.	source_transcript=ENST00000527562.1;source_transcript_name=ENST00000527562;source_gene=ENSG00000254488.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000254488.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000527562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000527562.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000254488;alternative_source_transcripts=ENST00000527562.1;transcript_id=HG003_chrY_T0001674;gene_id=HG003_chrY_G0000557;Parent=HG003_chrY_T0001674;transcript_name=HG003_chrY_T0001674;gene_name=ENSG00000254488;ID=intron:HG003_chrY_T0001674:1;Name=ENSG00000254488;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21866103	21866858	.	+	.	source_transcript=ENST00000527562.1;source_transcript_name=ENST00000527562;source_gene=ENSG00000254488.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000254488.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000527562.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000527562.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000254488;alternative_source_transcripts=ENST00000527562.1;transcript_id=HG003_chrY_T0001674;gene_id=HG003_chrY_G0000557;Parent=HG003_chrY_T0001674;transcript_name=HG003_chrY_T0001674;gene_name=ENSG00000254488;ID=exon:HG003_chrY_T0001674:2;Name=ENSG00000254488;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21960334	21960645	.	+	.	source_gene_common_name=TOMM22P1;source_gene=ENSG00000237427.1;alternative_source_transcripts=ENST00000418578.1,ENST00000418578.1;gene_id=HG003_chrY_G0000558;gene_biotype=processed_pseudogene;gene_name=TOMM22P1;gene_sources=liftoff;ID=HG003_chrY_G0000558;Name=TOMM22P1
HG003_chrY	CAT	transcript	21960334	21960645	1000	+	.	source_transcript=ENST00000418578.1;source_transcript_name=TOMM22P1-201;source_gene=ENSG00000237427.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237427.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000418578.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418578.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TOMM22P1;alternative_source_transcripts=ENST00000418578.1,ENST00000418578.1;transcript_id=HG003_chrY_T0001675;gene_id=HG003_chrY_G0000558;Parent=HG003_chrY_G0000558;transcript_name=HG003_chrY_T0001675;gene_name=TOMM22P1;ID=HG003_chrY_T0001675;Name=TOMM22P1
HG003_chrY	CAT	exon	21960334	21960645	.	+	.	source_transcript=ENST00000418578.1;source_transcript_name=TOMM22P1-201;source_gene=ENSG00000237427.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000237427.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000418578.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418578.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TOMM22P1;alternative_source_transcripts=ENST00000418578.1,ENST00000418578.1;transcript_id=HG003_chrY_T0001675;gene_id=HG003_chrY_G0000558;Parent=HG003_chrY_T0001675;transcript_name=HG003_chrY_T0001675;gene_name=TOMM22P1;ID=exon:HG003_chrY_T0001675:0;Name=TOMM22P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21964711	21967331	.	-	.	source_gene_common_name=ENSG00000297760;source_gene=ENSG00000297760.1;alternative_source_transcripts=ENST00000750840.1,ENST00000750840.1;gene_id=HG003_chrY_G0000559;gene_biotype=lncRNA;gene_name=ENSG00000297760;gene_sources=liftoff;ID=HG003_chrY_G0000559;Name=ENSG00000297760
HG003_chrY	CAT	transcript	21964711	21967331	1000	-	.	source_transcript=ENST00000750840.1;source_transcript_name=ENST00000750840;source_gene=ENSG00000297760.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297760.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000750840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000750840.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297760;alternative_source_transcripts=ENST00000750840.1,ENST00000750840.1;transcript_id=HG003_chrY_T0001676;gene_id=HG003_chrY_G0000559;Parent=HG003_chrY_G0000559;transcript_name=HG003_chrY_T0001676;gene_name=ENSG00000297760;ID=HG003_chrY_T0001676;Name=ENSG00000297760
HG003_chrY	CAT	exon	21964711	21966176	.	-	.	source_transcript=ENST00000750840.1;source_transcript_name=ENST00000750840;source_gene=ENSG00000297760.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297760.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000750840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000750840.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297760;alternative_source_transcripts=ENST00000750840.1,ENST00000750840.1;transcript_id=HG003_chrY_T0001676;gene_id=HG003_chrY_G0000559;Parent=HG003_chrY_T0001676;transcript_name=HG003_chrY_T0001676;gene_name=ENSG00000297760;ID=exon:HG003_chrY_T0001676:0;Name=ENSG00000297760;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21966177	21967224	.	-	.	source_transcript=ENST00000750840.1;source_transcript_name=ENST00000750840;source_gene=ENSG00000297760.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297760.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000750840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000750840.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297760;alternative_source_transcripts=ENST00000750840.1,ENST00000750840.1;transcript_id=HG003_chrY_T0001676;gene_id=HG003_chrY_G0000559;Parent=HG003_chrY_T0001676;transcript_name=HG003_chrY_T0001676;gene_name=ENSG00000297760;ID=intron:HG003_chrY_T0001676:0;Name=ENSG00000297760;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21967225	21967331	.	-	.	source_transcript=ENST00000750840.1;source_transcript_name=ENST00000750840;source_gene=ENSG00000297760.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000297760.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000750840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000750840.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000297760;alternative_source_transcripts=ENST00000750840.1,ENST00000750840.1;transcript_id=HG003_chrY_T0001676;gene_id=HG003_chrY_G0000559;Parent=HG003_chrY_T0001676;transcript_name=HG003_chrY_T0001676;gene_name=ENSG00000297760;ID=exon:HG003_chrY_T0001676:1;Name=ENSG00000297760;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	21968111	22087295	.	+	.	source_gene_common_name=ENSG00000289707;source_gene=ENSG00000289707.2;alternative_source_transcripts=ENST00000696464.1,ENST00000696464.1;gene_id=HG003_chrY_G0000560;gene_biotype=lncRNA;gene_name=ENSG00000289707;gene_sources=liftoff;ID=HG003_chrY_G0000560;Name=ENSG00000289707
HG003_chrY	CAT	transcript	21968111	22003062	1000	+	.	source_transcript=ENST00000696464.1;source_transcript_name=ENST00000696464;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696464.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696464.1,ENST00000696464.1;transcript_id=HG003_chrY_T0001677;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_G0000560;transcript_name=HG003_chrY_T0001677;gene_name=ENSG00000289707;ID=HG003_chrY_T0001677;Name=ENSG00000289707
HG003_chrY	CAT	exon	21968111	21968346	.	+	.	source_transcript=ENST00000696464.1;source_transcript_name=ENST00000696464;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696464.1,ENST00000696464.1;transcript_id=HG003_chrY_T0001677;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001677;transcript_name=HG003_chrY_T0001677;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001677:0;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21968347	21977899	.	+	.	source_transcript=ENST00000696464.1;source_transcript_name=ENST00000696464;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696464.1,ENST00000696464.1;transcript_id=HG003_chrY_T0001677;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001677;transcript_name=HG003_chrY_T0001677;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001677:0;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21977900	21977994	.	+	.	source_transcript=ENST00000696464.1;source_transcript_name=ENST00000696464;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696464.1,ENST00000696464.1;transcript_id=HG003_chrY_T0001677;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001677;transcript_name=HG003_chrY_T0001677;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001677:1;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21977995	21981061	.	+	.	source_transcript=ENST00000696464.1;source_transcript_name=ENST00000696464;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696464.1,ENST00000696464.1;transcript_id=HG003_chrY_T0001677;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001677;transcript_name=HG003_chrY_T0001677;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001677:1;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21981062	21981115	.	+	.	source_transcript=ENST00000696464.1;source_transcript_name=ENST00000696464;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696464.1,ENST00000696464.1;transcript_id=HG003_chrY_T0001677;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001677;transcript_name=HG003_chrY_T0001677;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001677:2;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21981116	21982311	.	+	.	source_transcript=ENST00000696464.1;source_transcript_name=ENST00000696464;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696464.1,ENST00000696464.1;transcript_id=HG003_chrY_T0001677;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001677;transcript_name=HG003_chrY_T0001677;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001677:2;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21982312	21982446	.	+	.	source_transcript=ENST00000696464.1;source_transcript_name=ENST00000696464;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696464.1,ENST00000696464.1;transcript_id=HG003_chrY_T0001677;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001677;transcript_name=HG003_chrY_T0001677;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001677:3;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21982447	21999424	.	+	.	source_transcript=ENST00000696464.1;source_transcript_name=ENST00000696464;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696464.1,ENST00000696464.1;transcript_id=HG003_chrY_T0001677;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001677;transcript_name=HG003_chrY_T0001677;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001677:3;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21999425	22003062	.	+	.	source_transcript=ENST00000696464.1;source_transcript_name=ENST00000696464;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696464.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696464.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696464.1,ENST00000696464.1;transcript_id=HG003_chrY_T0001677;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001677;transcript_name=HG003_chrY_T0001677;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001677:4;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	21968111	22087295	1000	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_G0000560;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=HG003_chrY_T0001678;Name=ENSG00000289707
HG003_chrY	CAT	exon	21968111	21968346	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001678:0;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21968347	21977899	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001678:0;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21977900	21977994	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001678:1;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21977995	21981061	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001678:1;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21981062	21981115	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001678:2;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21981116	21982311	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001678:2;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	21982312	21982446	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001678:3;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	21982447	22026609	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001678:3;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22026610	22026673	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001678:4;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22026674	22057820	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001678:4;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22057821	22057928	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001678:5;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22057929	22080018	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001678:5;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22080019	22080177	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001678:6;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22080178	22082591	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001678:6;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22082592	22082662	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001678:7;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22082663	22084882	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001678:7;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22084883	22087295	.	+	.	source_transcript=ENST00000696465.1;source_transcript_name=ENST00000696465;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000696465.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696465.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000696465.1,ENST00000696465.1;transcript_id=HG003_chrY_T0001678;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001678;transcript_name=HG003_chrY_T0001678;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001678:8;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22057606	22082662	1000	+	.	source_transcript=ENST00000813958.1;source_transcript_name=ENST00000813958;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000813958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000813958.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000813958.1,ENST00000813958.1;transcript_id=HG003_chrY_T0001680;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_G0000560;transcript_name=HG003_chrY_T0001680;gene_name=ENSG00000289707;ID=HG003_chrY_T0001680;Name=ENSG00000289707
HG003_chrY	CAT	exon	22057606	22057643	.	+	.	source_transcript=ENST00000813958.1;source_transcript_name=ENST00000813958;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000813958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000813958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000813958.1,ENST00000813958.1;transcript_id=HG003_chrY_T0001680;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001680;transcript_name=HG003_chrY_T0001680;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001680:0;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22057644	22057820	.	+	.	source_transcript=ENST00000813958.1;source_transcript_name=ENST00000813958;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000813958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000813958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000813958.1,ENST00000813958.1;transcript_id=HG003_chrY_T0001680;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001680;transcript_name=HG003_chrY_T0001680;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001680:0;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22057821	22057928	.	+	.	source_transcript=ENST00000813958.1;source_transcript_name=ENST00000813958;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000813958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000813958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000813958.1,ENST00000813958.1;transcript_id=HG003_chrY_T0001680;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001680;transcript_name=HG003_chrY_T0001680;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001680:1;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22057929	22080018	.	+	.	source_transcript=ENST00000813958.1;source_transcript_name=ENST00000813958;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000813958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000813958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000813958.1,ENST00000813958.1;transcript_id=HG003_chrY_T0001680;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001680;transcript_name=HG003_chrY_T0001680;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001680:1;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22080019	22080177	.	+	.	source_transcript=ENST00000813958.1;source_transcript_name=ENST00000813958;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000813958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000813958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000813958.1,ENST00000813958.1;transcript_id=HG003_chrY_T0001680;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001680;transcript_name=HG003_chrY_T0001680;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001680:2;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22080178	22082591	.	+	.	source_transcript=ENST00000813958.1;source_transcript_name=ENST00000813958;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000813958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000813958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000813958.1,ENST00000813958.1;transcript_id=HG003_chrY_T0001680;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001680;transcript_name=HG003_chrY_T0001680;gene_name=ENSG00000289707;ID=intron:HG003_chrY_T0001680:2;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22082592	22082662	.	+	.	source_transcript=ENST00000813958.1;source_transcript_name=ENST00000813958;source_gene=ENSG00000289707.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000289707.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000813958.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000813958.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289707;alternative_source_transcripts=ENST00000813958.1,ENST00000813958.1;transcript_id=HG003_chrY_T0001680;gene_id=HG003_chrY_G0000560;Parent=HG003_chrY_T0001680;transcript_name=HG003_chrY_T0001680;gene_name=ENSG00000289707;ID=exon:HG003_chrY_T0001680:3;Name=ENSG00000289707;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22050575	22051558	.	-	.	source_gene_common_name=NEFLP1;source_gene=ENSG00000232634.1;alternative_source_transcripts=ENST00000436364.1,ENST00000436364.1;gene_id=HG003_chrY_G0000561;gene_biotype=processed_pseudogene;gene_name=NEFLP1;gene_sources=liftoff;ID=HG003_chrY_G0000561;Name=NEFLP1
HG003_chrY	CAT	transcript	22050575	22051558	1000	-	.	source_transcript=ENST00000436364.1;source_transcript_name=NEFLP1-201;source_gene=ENSG00000232634.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232634.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000436364.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436364.1;transcript_score=199.898;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NEFLP1;alternative_source_transcripts=ENST00000436364.1,ENST00000436364.1;transcript_id=HG003_chrY_T0001679;gene_id=HG003_chrY_G0000561;Parent=HG003_chrY_G0000561;transcript_name=HG003_chrY_T0001679;gene_name=NEFLP1;ID=HG003_chrY_T0001679;Name=NEFLP1
HG003_chrY	CAT	exon	22050575	22051558	.	-	.	source_transcript=ENST00000436364.1;source_transcript_name=NEFLP1-201;source_gene=ENSG00000232634.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232634.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000436364.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436364.1;transcript_score=199.898;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=NEFLP1;alternative_source_transcripts=ENST00000436364.1,ENST00000436364.1;transcript_id=HG003_chrY_T0001679;gene_id=HG003_chrY_G0000561;Parent=HG003_chrY_T0001679;transcript_name=HG003_chrY_T0001679;gene_name=NEFLP1;ID=exon:HG003_chrY_T0001679:0;Name=NEFLP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22140732	22148359	.	+	.	source_gene_common_name=ENSG00000226918;source_gene=ENSG00000226918.1;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;gene_id=HG003_chrY_G0000562;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000226918;gene_sources=liftoff;ID=HG003_chrY_G0000562;Name=ENSG00000226918
HG003_chrY	CAT	transcript	22140732	22148359	1000	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_G0000562;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=HG003_chrY_T0001681;Name=ENSG00000226918
HG003_chrY	CAT	exon	22140732	22140840	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=exon:HG003_chrY_T0001681:0;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22140841	22141285	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=intron:HG003_chrY_T0001681:0;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22141286	22141464	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=exon:HG003_chrY_T0001681:1;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22141465	22143641	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=intron:HG003_chrY_T0001681:1;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22143642	22143759	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=exon:HG003_chrY_T0001681:2;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22143760	22144070	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=intron:HG003_chrY_T0001681:2;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22144071	22144101	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=exon:HG003_chrY_T0001681:3;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22144102	22146097	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=intron:HG003_chrY_T0001681:3;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22146098	22146212	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=exon:HG003_chrY_T0001681:4;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22146213	22147079	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=intron:HG003_chrY_T0001681:4;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22147080	22147190	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=exon:HG003_chrY_T0001681:5;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22147191	22147271	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=intron:HG003_chrY_T0001681:5;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22147272	22147360	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=exon:HG003_chrY_T0001681:6;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22147361	22147783	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=intron:HG003_chrY_T0001681:6;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22147784	22147961	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=exon:HG003_chrY_T0001681:7;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22147962	22148237	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=intron:HG003_chrY_T0001681:7;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22148238	22148359	.	+	.	source_transcript=ENST00000437359.1;source_transcript_name=ENST00000437359;source_gene=ENSG00000226918.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226918.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437359.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437359.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000226918;alternative_source_transcripts=ENST00000437359.1,ENST00000437359.1;transcript_id=HG003_chrY_T0001681;gene_id=HG003_chrY_G0000562;Parent=HG003_chrY_T0001681;transcript_name=HG003_chrY_T0001681;gene_name=ENSG00000226918;ID=exon:HG003_chrY_T0001681:8;Name=ENSG00000226918;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22212420	22215825	.	-	.	source_gene_common_name=PRORY;source_gene=ENSG00000183146.4;alternative_source_transcripts=ENST00000382764.1,ENST00000382764.1;gene_id=HG003_chrY_G0000563;gene_biotype=lncRNA;gene_name=PRORY;gene_sources=liftoff;ID=HG003_chrY_G0000563;Name=PRORY
HG003_chrY	CAT	transcript	22212420	22215825	1000	-	.	source_transcript=ENST00000382764.1;source_transcript_name=PRORY-201;source_gene=ENSG00000183146.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183146.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382764.1;transcript_score=299.772;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=ENST00000382764.1,ENST00000382764.1;transcript_id=HG003_chrY_T0001682;gene_id=HG003_chrY_G0000563;Parent=HG003_chrY_G0000563;transcript_name=HG003_chrY_T0001682;gene_name=PRORY;ID=HG003_chrY_T0001682;Name=PRORY
HG003_chrY	CAT	exon	22212420	22212745	.	-	.	source_transcript=ENST00000382764.1;source_transcript_name=PRORY-201;source_gene=ENSG00000183146.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183146.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382764.1;transcript_score=299.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=ENST00000382764.1,ENST00000382764.1;transcript_id=HG003_chrY_T0001682;gene_id=HG003_chrY_G0000563;Parent=HG003_chrY_T0001682;transcript_name=HG003_chrY_T0001682;gene_name=PRORY;ID=exon:HG003_chrY_T0001682:0;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22212746	22212896	.	-	.	source_transcript=ENST00000382764.1;source_transcript_name=PRORY-201;source_gene=ENSG00000183146.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183146.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382764.1;transcript_score=299.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=ENST00000382764.1,ENST00000382764.1;transcript_id=HG003_chrY_T0001682;gene_id=HG003_chrY_G0000563;Parent=HG003_chrY_T0001682;transcript_name=HG003_chrY_T0001682;gene_name=PRORY;ID=intron:HG003_chrY_T0001682:0;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22212897	22213261	.	-	.	source_transcript=ENST00000382764.1;source_transcript_name=PRORY-201;source_gene=ENSG00000183146.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183146.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382764.1;transcript_score=299.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=ENST00000382764.1,ENST00000382764.1;transcript_id=HG003_chrY_T0001682;gene_id=HG003_chrY_G0000563;Parent=HG003_chrY_T0001682;transcript_name=HG003_chrY_T0001682;gene_name=PRORY;ID=exon:HG003_chrY_T0001682:1;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22213262	22213377	.	-	.	source_transcript=ENST00000382764.1;source_transcript_name=PRORY-201;source_gene=ENSG00000183146.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183146.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382764.1;transcript_score=299.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=ENST00000382764.1,ENST00000382764.1;transcript_id=HG003_chrY_T0001682;gene_id=HG003_chrY_G0000563;Parent=HG003_chrY_T0001682;transcript_name=HG003_chrY_T0001682;gene_name=PRORY;ID=intron:HG003_chrY_T0001682:1;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22213378	22213434	.	-	.	source_transcript=ENST00000382764.1;source_transcript_name=PRORY-201;source_gene=ENSG00000183146.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183146.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382764.1;transcript_score=299.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=ENST00000382764.1,ENST00000382764.1;transcript_id=HG003_chrY_T0001682;gene_id=HG003_chrY_G0000563;Parent=HG003_chrY_T0001682;transcript_name=HG003_chrY_T0001682;gene_name=PRORY;ID=exon:HG003_chrY_T0001682:2;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22213435	22215696	.	-	.	source_transcript=ENST00000382764.1;source_transcript_name=PRORY-201;source_gene=ENSG00000183146.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183146.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382764.1;transcript_score=299.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=ENST00000382764.1,ENST00000382764.1;transcript_id=HG003_chrY_T0001682;gene_id=HG003_chrY_G0000563;Parent=HG003_chrY_T0001682;transcript_name=HG003_chrY_T0001682;gene_name=PRORY;ID=intron:HG003_chrY_T0001682:2;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22215697	22215825	.	-	.	source_transcript=ENST00000382764.1;source_transcript_name=PRORY-201;source_gene=ENSG00000183146.4;source_gene_biotype=lncRNA;original_gene_id=ENSG00000183146.4;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000382764.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382764.1;transcript_score=299.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PRORY;alternative_source_transcripts=ENST00000382764.1,ENST00000382764.1;transcript_id=HG003_chrY_T0001682;gene_id=HG003_chrY_G0000563;Parent=HG003_chrY_T0001682;transcript_name=HG003_chrY_T0001682;gene_name=PRORY;ID=exon:HG003_chrY_T0001682:3;Name=PRORY;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22224103	22281395	.	-	.	source_gene_common_name=ENSG00000293672;source_gene=ENSG00000293672.1;gene_id=HG003_chrY_G0000564;gene_biotype=lncRNA;gene_name=ENSG00000293672;gene_sources=liftoff;ID=HG003_chrY_G0000564;Name=ENSG00000293672
HG003_chrY	CAT	transcript	22224103	22281395	1000	-	.	source_transcript=ENST00000717385.1;source_transcript_name=ENST00000717385;source_gene=ENSG00000293672.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293672.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717385.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717385.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293672;transcript_id=HG003_chrY_T0001683;gene_id=HG003_chrY_G0000564;Parent=HG003_chrY_G0000564;transcript_name=HG003_chrY_T0001683;gene_name=ENSG00000293672;ID=HG003_chrY_T0001683;Name=ENSG00000293672
HG003_chrY	CAT	exon	22224103	22224757	.	-	.	source_transcript=ENST00000717385.1;source_transcript_name=ENST00000717385;source_gene=ENSG00000293672.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293672.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717385.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293672;transcript_id=HG003_chrY_T0001683;gene_id=HG003_chrY_G0000564;Parent=HG003_chrY_T0001683;transcript_name=HG003_chrY_T0001683;gene_name=ENSG00000293672;ID=exon:HG003_chrY_T0001683:0;Name=ENSG00000293672;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22224758	22225165	.	-	.	source_transcript=ENST00000717385.1;source_transcript_name=ENST00000717385;source_gene=ENSG00000293672.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293672.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717385.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293672;transcript_id=HG003_chrY_T0001683;gene_id=HG003_chrY_G0000564;Parent=HG003_chrY_T0001683;transcript_name=HG003_chrY_T0001683;gene_name=ENSG00000293672;ID=intron:HG003_chrY_T0001683:0;Name=ENSG00000293672;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22225166	22225254	.	-	.	source_transcript=ENST00000717385.1;source_transcript_name=ENST00000717385;source_gene=ENSG00000293672.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293672.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717385.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293672;transcript_id=HG003_chrY_T0001683;gene_id=HG003_chrY_G0000564;Parent=HG003_chrY_T0001683;transcript_name=HG003_chrY_T0001683;gene_name=ENSG00000293672;ID=exon:HG003_chrY_T0001683:1;Name=ENSG00000293672;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22225255	22281110	.	-	.	source_transcript=ENST00000717385.1;source_transcript_name=ENST00000717385;source_gene=ENSG00000293672.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293672.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717385.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293672;transcript_id=HG003_chrY_T0001683;gene_id=HG003_chrY_G0000564;Parent=HG003_chrY_T0001683;transcript_name=HG003_chrY_T0001683;gene_name=ENSG00000293672;ID=intron:HG003_chrY_T0001683:1;Name=ENSG00000293672;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22281111	22281395	.	-	.	source_transcript=ENST00000717385.1;source_transcript_name=ENST00000717385;source_gene=ENSG00000293672.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293672.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717385.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717385.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293672;transcript_id=HG003_chrY_T0001683;gene_id=HG003_chrY_G0000564;Parent=HG003_chrY_T0001683;transcript_name=HG003_chrY_T0001683;gene_name=ENSG00000293672;ID=exon:HG003_chrY_T0001683:2;Name=ENSG00000293672;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22224174	22234237	.	-	.	source_gene_common_name=ENSG00000290954;source_gene=ENSG00000290954.2;gene_id=HG003_chrY_G0000565;gene_biotype=lncRNA;gene_name=ENSG00000290954;gene_sources=liftoff;ID=HG003_chrY_G0000565;Name=ENSG00000290954
HG003_chrY	CAT	transcript	22224174	22234203	1000	-	.	source_transcript=ENST00000717386.1;source_transcript_name=ENST00000717386;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717386.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717386.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001684;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_G0000565;transcript_name=HG003_chrY_T0001684;gene_name=ENSG00000290954;ID=HG003_chrY_T0001684;Name=ENSG00000290954
HG003_chrY	CAT	exon	22224174	22224757	.	-	.	source_transcript=ENST00000717386.1;source_transcript_name=ENST00000717386;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717386.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001684;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001684;transcript_name=HG003_chrY_T0001684;gene_name=ENSG00000290954;ID=exon:HG003_chrY_T0001684:0;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22224758	22225165	.	-	.	source_transcript=ENST00000717386.1;source_transcript_name=ENST00000717386;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717386.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001684;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001684;transcript_name=HG003_chrY_T0001684;gene_name=ENSG00000290954;ID=intron:HG003_chrY_T0001684:0;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22225166	22225254	.	-	.	source_transcript=ENST00000717386.1;source_transcript_name=ENST00000717386;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717386.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001684;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001684;transcript_name=HG003_chrY_T0001684;gene_name=ENSG00000290954;ID=exon:HG003_chrY_T0001684:1;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22225255	22225336	.	-	.	source_transcript=ENST00000717386.1;source_transcript_name=ENST00000717386;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717386.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001684;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001684;transcript_name=HG003_chrY_T0001684;gene_name=ENSG00000290954;ID=intron:HG003_chrY_T0001684:1;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22225337	22225447	.	-	.	source_transcript=ENST00000717386.1;source_transcript_name=ENST00000717386;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717386.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001684;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001684;transcript_name=HG003_chrY_T0001684;gene_name=ENSG00000290954;ID=exon:HG003_chrY_T0001684:2;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22225448	22230942	.	-	.	source_transcript=ENST00000717386.1;source_transcript_name=ENST00000717386;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717386.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001684;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001684;transcript_name=HG003_chrY_T0001684;gene_name=ENSG00000290954;ID=intron:HG003_chrY_T0001684:2;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22230943	22231055	.	-	.	source_transcript=ENST00000717386.1;source_transcript_name=ENST00000717386;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717386.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001684;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001684;transcript_name=HG003_chrY_T0001684;gene_name=ENSG00000290954;ID=exon:HG003_chrY_T0001684:3;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22231056	22233383	.	-	.	source_transcript=ENST00000717386.1;source_transcript_name=ENST00000717386;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717386.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001684;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001684;transcript_name=HG003_chrY_T0001684;gene_name=ENSG00000290954;ID=intron:HG003_chrY_T0001684:3;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22233384	22233448	.	-	.	source_transcript=ENST00000717386.1;source_transcript_name=ENST00000717386;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717386.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001684;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001684;transcript_name=HG003_chrY_T0001684;gene_name=ENSG00000290954;ID=exon:HG003_chrY_T0001684:4;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22233449	22234094	.	-	.	source_transcript=ENST00000717386.1;source_transcript_name=ENST00000717386;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717386.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001684;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001684;transcript_name=HG003_chrY_T0001684;gene_name=ENSG00000290954;ID=intron:HG003_chrY_T0001684:4;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22234095	22234203	.	-	.	source_transcript=ENST00000717386.1;source_transcript_name=ENST00000717386;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717386.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717386.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001684;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001684;transcript_name=HG003_chrY_T0001684;gene_name=ENSG00000290954;ID=exon:HG003_chrY_T0001684:5;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22224614	22234237	1000	-	.	source_transcript=ENST00000444169.2;source_transcript_name=ENST00000444169;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444169.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000444169.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001686;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_G0000565;transcript_name=HG003_chrY_T0001686;gene_name=ENSG00000290954;ID=HG003_chrY_T0001686;Name=ENSG00000290954
HG003_chrY	CAT	exon	22224614	22224757	.	-	.	source_transcript=ENST00000444169.2;source_transcript_name=ENST00000444169;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444169.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000444169.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001686;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001686;transcript_name=HG003_chrY_T0001686;gene_name=ENSG00000290954;ID=exon:HG003_chrY_T0001686:0;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22224758	22225165	.	-	.	source_transcript=ENST00000444169.2;source_transcript_name=ENST00000444169;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444169.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000444169.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001686;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001686;transcript_name=HG003_chrY_T0001686;gene_name=ENSG00000290954;ID=intron:HG003_chrY_T0001686:0;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22225166	22225254	.	-	.	source_transcript=ENST00000444169.2;source_transcript_name=ENST00000444169;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444169.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000444169.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001686;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001686;transcript_name=HG003_chrY_T0001686;gene_name=ENSG00000290954;ID=exon:HG003_chrY_T0001686:1;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22225255	22225336	.	-	.	source_transcript=ENST00000444169.2;source_transcript_name=ENST00000444169;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444169.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000444169.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001686;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001686;transcript_name=HG003_chrY_T0001686;gene_name=ENSG00000290954;ID=intron:HG003_chrY_T0001686:1;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22225337	22225447	.	-	.	source_transcript=ENST00000444169.2;source_transcript_name=ENST00000444169;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444169.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000444169.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001686;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001686;transcript_name=HG003_chrY_T0001686;gene_name=ENSG00000290954;ID=exon:HG003_chrY_T0001686:2;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22225448	22230388	.	-	.	source_transcript=ENST00000444169.2;source_transcript_name=ENST00000444169;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444169.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000444169.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001686;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001686;transcript_name=HG003_chrY_T0001686;gene_name=ENSG00000290954;ID=intron:HG003_chrY_T0001686:2;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22230389	22230492	.	-	.	source_transcript=ENST00000444169.2;source_transcript_name=ENST00000444169;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444169.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000444169.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001686;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001686;transcript_name=HG003_chrY_T0001686;gene_name=ENSG00000290954;ID=exon:HG003_chrY_T0001686:3;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22230493	22230942	.	-	.	source_transcript=ENST00000444169.2;source_transcript_name=ENST00000444169;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444169.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000444169.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001686;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001686;transcript_name=HG003_chrY_T0001686;gene_name=ENSG00000290954;ID=intron:HG003_chrY_T0001686:3;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22230943	22231055	.	-	.	source_transcript=ENST00000444169.2;source_transcript_name=ENST00000444169;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444169.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000444169.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001686;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001686;transcript_name=HG003_chrY_T0001686;gene_name=ENSG00000290954;ID=exon:HG003_chrY_T0001686:4;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22231056	22234094	.	-	.	source_transcript=ENST00000444169.2;source_transcript_name=ENST00000444169;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444169.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000444169.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001686;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001686;transcript_name=HG003_chrY_T0001686;gene_name=ENSG00000290954;ID=intron:HG003_chrY_T0001686:4;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22234095	22234237	.	-	.	source_transcript=ENST00000444169.2;source_transcript_name=ENST00000444169;source_gene=ENSG00000290954.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290954.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000444169.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000444169.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290954;transcript_id=HG003_chrY_T0001686;gene_id=HG003_chrY_G0000565;Parent=HG003_chrY_T0001686;transcript_name=HG003_chrY_T0001686;gene_name=ENSG00000290954;ID=exon:HG003_chrY_T0001686:5;Name=ENSG00000290954;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22224457	22231051	.	-	.	source_gene_common_name=RBMY2EP;source_gene=ENSG00000223637.9;gene_id=HG003_chrY_G0000566;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RBMY2EP;gene_sources=liftoff;ID=HG003_chrY_G0000566;Name=RBMY2EP
HG003_chrY	CAT	transcript	22224457	22231051	1000	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_G0000566;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=HG003_chrY_T0001685;Name=RBMY2EP
HG003_chrY	CAT	exon	22224457	22224757	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=exon:HG003_chrY_T0001685:0;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22224758	22225165	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=intron:HG003_chrY_T0001685:0;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22225166	22225254	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=exon:HG003_chrY_T0001685:1;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22225255	22225336	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=intron:HG003_chrY_T0001685:1;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22225337	22225447	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=exon:HG003_chrY_T0001685:2;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22225448	22225811	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=intron:HG003_chrY_T0001685:2;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22225812	22225922	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=exon:HG003_chrY_T0001685:3;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22225923	22226803	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=intron:HG003_chrY_T0001685:3;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22226804	22226918	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=exon:HG003_chrY_T0001685:4;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22226919	22230388	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=intron:HG003_chrY_T0001685:4;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22230389	22230492	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=exon:HG003_chrY_T0001685:5;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22230493	22230942	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=intron:HG003_chrY_T0001685:5;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22230943	22231051	.	-	.	source_transcript=ENST00000456360.5;source_transcript_name=RBMY2EP-201;source_gene=ENSG00000223637.9;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000223637.9;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000456360.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000456360.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2EP;transcript_id=HG003_chrY_T0001685;gene_id=HG003_chrY_G0000566;Parent=HG003_chrY_T0001685;transcript_name=HG003_chrY_T0001685;gene_name=RBMY2EP;ID=exon:HG003_chrY_T0001685:6;Name=RBMY2EP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22235236	22235461	.	+	.	source_gene_common_name=ENSG00000236615;source_gene=ENSG00000236615.1;alternative_source_transcripts=ENST00000428616.1,ENST00000428616.1;gene_id=HG003_chrY_G0000567;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000236615;gene_sources=liftoff;ID=HG003_chrY_G0000567;Name=ENSG00000236615
HG003_chrY	CAT	transcript	22235236	22235461	1000	+	.	source_transcript=ENST00000428616.1;source_transcript_name=ENST00000428616;source_gene=ENSG00000236615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000428616.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428616.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236615;alternative_source_transcripts=ENST00000428616.1,ENST00000428616.1;transcript_id=HG003_chrY_T0001687;gene_id=HG003_chrY_G0000567;Parent=HG003_chrY_G0000567;transcript_name=HG003_chrY_T0001687;gene_name=ENSG00000236615;ID=HG003_chrY_T0001687;Name=ENSG00000236615
HG003_chrY	CAT	exon	22235236	22235461	.	+	.	source_transcript=ENST00000428616.1;source_transcript_name=ENST00000428616;source_gene=ENSG00000236615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000428616.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428616.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236615;alternative_source_transcripts=ENST00000428616.1,ENST00000428616.1;transcript_id=HG003_chrY_T0001687;gene_id=HG003_chrY_G0000567;Parent=HG003_chrY_T0001687;transcript_name=HG003_chrY_T0001687;gene_name=ENSG00000236615;ID=exon:HG003_chrY_T0001687:0;Name=ENSG00000236615;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22253494	22285683	.	-	.	source_gene_common_name=ENSG00000288057;source_gene=ENSG00000288057.2;gene_id=HG003_chrY_G0000568;gene_biotype=lncRNA;gene_name=ENSG00000288057;gene_sources=liftoff;ID=HG003_chrY_G0000568;Name=ENSG00000288057
HG003_chrY	CAT	transcript	22253494	22285683	1000	-	.	source_transcript=ENST00000660183.1;source_transcript_name=ENST00000660183;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660183.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001688;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_G0000568;transcript_name=HG003_chrY_T0001688;gene_name=ENSG00000288057;ID=HG003_chrY_T0001688;Name=ENSG00000288057
HG003_chrY	CAT	exon	22253494	22255729	.	-	.	source_transcript=ENST00000660183.1;source_transcript_name=ENST00000660183;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001688;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_T0001688;transcript_name=HG003_chrY_T0001688;gene_name=ENSG00000288057;ID=exon:HG003_chrY_T0001688:0;Name=ENSG00000288057;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22255730	22281110	.	-	.	source_transcript=ENST00000660183.1;source_transcript_name=ENST00000660183;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001688;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_T0001688;transcript_name=HG003_chrY_T0001688;gene_name=ENSG00000288057;ID=intron:HG003_chrY_T0001688:0;Name=ENSG00000288057;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22281111	22281273	.	-	.	source_transcript=ENST00000660183.1;source_transcript_name=ENST00000660183;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001688;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_T0001688;transcript_name=HG003_chrY_T0001688;gene_name=ENSG00000288057;ID=exon:HG003_chrY_T0001688:1;Name=ENSG00000288057;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22281274	22283989	.	-	.	source_transcript=ENST00000660183.1;source_transcript_name=ENST00000660183;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001688;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_T0001688;transcript_name=HG003_chrY_T0001688;gene_name=ENSG00000288057;ID=intron:HG003_chrY_T0001688:1;Name=ENSG00000288057;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22283990	22284129	.	-	.	source_transcript=ENST00000660183.1;source_transcript_name=ENST00000660183;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001688;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_T0001688;transcript_name=HG003_chrY_T0001688;gene_name=ENSG00000288057;ID=exon:HG003_chrY_T0001688:2;Name=ENSG00000288057;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22284130	22285364	.	-	.	source_transcript=ENST00000660183.1;source_transcript_name=ENST00000660183;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001688;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_T0001688;transcript_name=HG003_chrY_T0001688;gene_name=ENSG00000288057;ID=intron:HG003_chrY_T0001688:2;Name=ENSG00000288057;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22285365	22285683	.	-	.	source_transcript=ENST00000660183.1;source_transcript_name=ENST00000660183;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000660183.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000660183.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001688;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_T0001688;transcript_name=HG003_chrY_T0001688;gene_name=ENSG00000288057;ID=exon:HG003_chrY_T0001688:3;Name=ENSG00000288057;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22255346	22281312	1000	-	.	source_transcript=ENST00000717387.1;source_transcript_name=ENST00000717387;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717387.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717387.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001689;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_G0000568;transcript_name=HG003_chrY_T0001689;gene_name=ENSG00000288057;ID=HG003_chrY_T0001689;Name=ENSG00000288057
HG003_chrY	CAT	exon	22255346	22255729	.	-	.	source_transcript=ENST00000717387.1;source_transcript_name=ENST00000717387;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717387.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717387.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001689;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_T0001689;transcript_name=HG003_chrY_T0001689;gene_name=ENSG00000288057;ID=exon:HG003_chrY_T0001689:0;Name=ENSG00000288057;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22255730	22260871	.	-	.	source_transcript=ENST00000717387.1;source_transcript_name=ENST00000717387;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717387.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717387.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001689;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_T0001689;transcript_name=HG003_chrY_T0001689;gene_name=ENSG00000288057;ID=intron:HG003_chrY_T0001689:0;Name=ENSG00000288057;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22260872	22260960	.	-	.	source_transcript=ENST00000717387.1;source_transcript_name=ENST00000717387;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717387.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717387.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001689;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_T0001689;transcript_name=HG003_chrY_T0001689;gene_name=ENSG00000288057;ID=exon:HG003_chrY_T0001689:1;Name=ENSG00000288057;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22260961	22281110	.	-	.	source_transcript=ENST00000717387.1;source_transcript_name=ENST00000717387;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717387.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717387.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001689;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_T0001689;transcript_name=HG003_chrY_T0001689;gene_name=ENSG00000288057;ID=intron:HG003_chrY_T0001689:1;Name=ENSG00000288057;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22281111	22281312	.	-	.	source_transcript=ENST00000717387.1;source_transcript_name=ENST00000717387;source_gene=ENSG00000288057.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000288057.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000717387.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000717387.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000288057;transcript_id=HG003_chrY_T0001689;gene_id=HG003_chrY_G0000568;Parent=HG003_chrY_T0001689;transcript_name=HG003_chrY_T0001689;gene_name=ENSG00000288057;ID=exon:HG003_chrY_T0001689:2;Name=ENSG00000288057;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22260163	22266712	.	-	.	source_gene_common_name=RBMY2TP;source_gene=ENSG00000237269.1;gene_id=HG003_chrY_G0000569;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RBMY2TP;gene_sources=liftoff;ID=HG003_chrY_G0000569;Name=RBMY2TP
HG003_chrY	CAT	transcript	22260163	22266712	1000	-	.	source_transcript=ENST00000451162.1;source_transcript_name=RBMY2TP-201;source_gene=ENSG00000237269.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000237269.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451162.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2TP;transcript_id=HG003_chrY_T0001690;gene_id=HG003_chrY_G0000569;Parent=HG003_chrY_G0000569;transcript_name=HG003_chrY_T0001690;gene_name=RBMY2TP;ID=HG003_chrY_T0001690;Name=RBMY2TP
HG003_chrY	CAT	exon	22260163	22260463	.	-	.	source_transcript=ENST00000451162.1;source_transcript_name=RBMY2TP-201;source_gene=ENSG00000237269.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000237269.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451162.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2TP;transcript_id=HG003_chrY_T0001690;gene_id=HG003_chrY_G0000569;Parent=HG003_chrY_T0001690;transcript_name=HG003_chrY_T0001690;gene_name=RBMY2TP;ID=exon:HG003_chrY_T0001690:0;Name=RBMY2TP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22260464	22260871	.	-	.	source_transcript=ENST00000451162.1;source_transcript_name=RBMY2TP-201;source_gene=ENSG00000237269.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000237269.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451162.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2TP;transcript_id=HG003_chrY_T0001690;gene_id=HG003_chrY_G0000569;Parent=HG003_chrY_T0001690;transcript_name=HG003_chrY_T0001690;gene_name=RBMY2TP;ID=intron:HG003_chrY_T0001690:0;Name=RBMY2TP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22260872	22260960	.	-	.	source_transcript=ENST00000451162.1;source_transcript_name=RBMY2TP-201;source_gene=ENSG00000237269.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000237269.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451162.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2TP;transcript_id=HG003_chrY_T0001690;gene_id=HG003_chrY_G0000569;Parent=HG003_chrY_T0001690;transcript_name=HG003_chrY_T0001690;gene_name=RBMY2TP;ID=exon:HG003_chrY_T0001690:1;Name=RBMY2TP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22260961	22261053	.	-	.	source_transcript=ENST00000451162.1;source_transcript_name=RBMY2TP-201;source_gene=ENSG00000237269.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000237269.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451162.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2TP;transcript_id=HG003_chrY_T0001690;gene_id=HG003_chrY_G0000569;Parent=HG003_chrY_T0001690;transcript_name=HG003_chrY_T0001690;gene_name=RBMY2TP;ID=intron:HG003_chrY_T0001690:1;Name=RBMY2TP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22261054	22261164	.	-	.	source_transcript=ENST00000451162.1;source_transcript_name=RBMY2TP-201;source_gene=ENSG00000237269.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000237269.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451162.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2TP;transcript_id=HG003_chrY_T0001690;gene_id=HG003_chrY_G0000569;Parent=HG003_chrY_T0001690;transcript_name=HG003_chrY_T0001690;gene_name=RBMY2TP;ID=exon:HG003_chrY_T0001690:2;Name=RBMY2TP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22261165	22262050	.	-	.	source_transcript=ENST00000451162.1;source_transcript_name=RBMY2TP-201;source_gene=ENSG00000237269.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000237269.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451162.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2TP;transcript_id=HG003_chrY_T0001690;gene_id=HG003_chrY_G0000569;Parent=HG003_chrY_T0001690;transcript_name=HG003_chrY_T0001690;gene_name=RBMY2TP;ID=intron:HG003_chrY_T0001690:2;Name=RBMY2TP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22262051	22262165	.	-	.	source_transcript=ENST00000451162.1;source_transcript_name=RBMY2TP-201;source_gene=ENSG00000237269.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000237269.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451162.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2TP;transcript_id=HG003_chrY_T0001690;gene_id=HG003_chrY_G0000569;Parent=HG003_chrY_T0001690;transcript_name=HG003_chrY_T0001690;gene_name=RBMY2TP;ID=exon:HG003_chrY_T0001690:3;Name=RBMY2TP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22262166	22264157	.	-	.	source_transcript=ENST00000451162.1;source_transcript_name=RBMY2TP-201;source_gene=ENSG00000237269.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000237269.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451162.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2TP;transcript_id=HG003_chrY_T0001690;gene_id=HG003_chrY_G0000569;Parent=HG003_chrY_T0001690;transcript_name=HG003_chrY_T0001690;gene_name=RBMY2TP;ID=intron:HG003_chrY_T0001690:3;Name=RBMY2TP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22264158	22264310	.	-	.	source_transcript=ENST00000451162.1;source_transcript_name=RBMY2TP-201;source_gene=ENSG00000237269.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000237269.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451162.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2TP;transcript_id=HG003_chrY_T0001690;gene_id=HG003_chrY_G0000569;Parent=HG003_chrY_T0001690;transcript_name=HG003_chrY_T0001690;gene_name=RBMY2TP;ID=exon:HG003_chrY_T0001690:4;Name=RBMY2TP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22264311	22266534	.	-	.	source_transcript=ENST00000451162.1;source_transcript_name=RBMY2TP-201;source_gene=ENSG00000237269.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000237269.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451162.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2TP;transcript_id=HG003_chrY_T0001690;gene_id=HG003_chrY_G0000569;Parent=HG003_chrY_T0001690;transcript_name=HG003_chrY_T0001690;gene_name=RBMY2TP;ID=intron:HG003_chrY_T0001690:4;Name=RBMY2TP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22266535	22266712	.	-	.	source_transcript=ENST00000451162.1;source_transcript_name=RBMY2TP-201;source_gene=ENSG00000237269.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000237269.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451162.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451162.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2TP;transcript_id=HG003_chrY_T0001690;gene_id=HG003_chrY_G0000569;Parent=HG003_chrY_T0001690;transcript_name=HG003_chrY_T0001690;gene_name=RBMY2TP;ID=exon:HG003_chrY_T0001690:5;Name=RBMY2TP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22297625	22300150	.	+	.	source_gene_common_name=TSPY14P;source_gene=ENSG00000169849.8;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;gene_id=HG003_chrY_G0000570;gene_biotype=unprocessed_pseudogene;gene_name=TSPY14P;gene_sources=liftoff;ID=HG003_chrY_G0000570;Name=TSPY14P
HG003_chrY	CAT	transcript	22297625	22300150	1000	+	.	source_transcript=ENST00000303979.7;source_transcript_name=TSPY14P-201;source_gene=ENSG00000169849.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169849.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000303979.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000303979.7;transcript_score=299.89099999999996;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY14P;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;transcript_id=HG003_chrY_T0001691;gene_id=HG003_chrY_G0000570;Parent=HG003_chrY_G0000570;transcript_name=HG003_chrY_T0001691;gene_name=TSPY14P;ID=HG003_chrY_T0001691;Name=TSPY14P
HG003_chrY	CAT	exon	22297625	22298098	.	+	.	source_transcript=ENST00000303979.7;source_transcript_name=TSPY14P-201;source_gene=ENSG00000169849.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169849.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000303979.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000303979.7;transcript_score=299.89099999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY14P;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;transcript_id=HG003_chrY_T0001691;gene_id=HG003_chrY_G0000570;Parent=HG003_chrY_T0001691;transcript_name=HG003_chrY_T0001691;gene_name=TSPY14P;ID=exon:HG003_chrY_T0001691:0;Name=TSPY14P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22298099	22298707	.	+	.	source_transcript=ENST00000303979.7;source_transcript_name=TSPY14P-201;source_gene=ENSG00000169849.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169849.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000303979.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000303979.7;transcript_score=299.89099999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY14P;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;transcript_id=HG003_chrY_T0001691;gene_id=HG003_chrY_G0000570;Parent=HG003_chrY_T0001691;transcript_name=HG003_chrY_T0001691;gene_name=TSPY14P;ID=intron:HG003_chrY_T0001691:0;Name=TSPY14P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22298708	22298785	.	+	.	source_transcript=ENST00000303979.7;source_transcript_name=TSPY14P-201;source_gene=ENSG00000169849.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169849.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000303979.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000303979.7;transcript_score=299.89099999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY14P;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;transcript_id=HG003_chrY_T0001691;gene_id=HG003_chrY_G0000570;Parent=HG003_chrY_T0001691;transcript_name=HG003_chrY_T0001691;gene_name=TSPY14P;ID=exon:HG003_chrY_T0001691:1;Name=TSPY14P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22298786	22298913	.	+	.	source_transcript=ENST00000303979.7;source_transcript_name=TSPY14P-201;source_gene=ENSG00000169849.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169849.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000303979.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000303979.7;transcript_score=299.89099999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY14P;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;transcript_id=HG003_chrY_T0001691;gene_id=HG003_chrY_G0000570;Parent=HG003_chrY_T0001691;transcript_name=HG003_chrY_T0001691;gene_name=TSPY14P;ID=intron:HG003_chrY_T0001691:1;Name=TSPY14P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22298914	22299025	.	+	.	source_transcript=ENST00000303979.7;source_transcript_name=TSPY14P-201;source_gene=ENSG00000169849.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169849.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000303979.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000303979.7;transcript_score=299.89099999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY14P;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;transcript_id=HG003_chrY_T0001691;gene_id=HG003_chrY_G0000570;Parent=HG003_chrY_T0001691;transcript_name=HG003_chrY_T0001691;gene_name=TSPY14P;ID=exon:HG003_chrY_T0001691:2;Name=TSPY14P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22299026	22299124	.	+	.	source_transcript=ENST00000303979.7;source_transcript_name=TSPY14P-201;source_gene=ENSG00000169849.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169849.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000303979.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000303979.7;transcript_score=299.89099999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY14P;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;transcript_id=HG003_chrY_T0001691;gene_id=HG003_chrY_G0000570;Parent=HG003_chrY_T0001691;transcript_name=HG003_chrY_T0001691;gene_name=TSPY14P;ID=intron:HG003_chrY_T0001691:2;Name=TSPY14P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22299125	22299270	.	+	.	source_transcript=ENST00000303979.7;source_transcript_name=TSPY14P-201;source_gene=ENSG00000169849.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169849.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000303979.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000303979.7;transcript_score=299.89099999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY14P;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;transcript_id=HG003_chrY_T0001691;gene_id=HG003_chrY_G0000570;Parent=HG003_chrY_T0001691;transcript_name=HG003_chrY_T0001691;gene_name=TSPY14P;ID=exon:HG003_chrY_T0001691:3;Name=TSPY14P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22299271	22299378	.	+	.	source_transcript=ENST00000303979.7;source_transcript_name=TSPY14P-201;source_gene=ENSG00000169849.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169849.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000303979.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000303979.7;transcript_score=299.89099999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY14P;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;transcript_id=HG003_chrY_T0001691;gene_id=HG003_chrY_G0000570;Parent=HG003_chrY_T0001691;transcript_name=HG003_chrY_T0001691;gene_name=TSPY14P;ID=intron:HG003_chrY_T0001691:3;Name=TSPY14P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22299379	22299460	.	+	.	source_transcript=ENST00000303979.7;source_transcript_name=TSPY14P-201;source_gene=ENSG00000169849.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169849.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000303979.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000303979.7;transcript_score=299.89099999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY14P;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;transcript_id=HG003_chrY_T0001691;gene_id=HG003_chrY_G0000570;Parent=HG003_chrY_T0001691;transcript_name=HG003_chrY_T0001691;gene_name=TSPY14P;ID=exon:HG003_chrY_T0001691:4;Name=TSPY14P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22299461	22300127	.	+	.	source_transcript=ENST00000303979.7;source_transcript_name=TSPY14P-201;source_gene=ENSG00000169849.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169849.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000303979.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000303979.7;transcript_score=299.89099999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY14P;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;transcript_id=HG003_chrY_T0001691;gene_id=HG003_chrY_G0000570;Parent=HG003_chrY_T0001691;transcript_name=HG003_chrY_T0001691;gene_name=TSPY14P;ID=intron:HG003_chrY_T0001691:4;Name=TSPY14P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22300128	22300150	.	+	.	source_transcript=ENST00000303979.7;source_transcript_name=TSPY14P-201;source_gene=ENSG00000169849.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169849.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000303979.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000303979.7;transcript_score=299.89099999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY14P;alternative_source_transcripts=ENST00000303979.7,ENST00000303979.7;transcript_id=HG003_chrY_T0001691;gene_id=HG003_chrY_G0000570;Parent=HG003_chrY_T0001691;transcript_name=HG003_chrY_T0001691;gene_name=TSPY14P;ID=exon:HG003_chrY_T0001691:5;Name=TSPY14P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22322986	22331434	.	+	.	source_gene_common_name=RBMY1HP;source_gene=ENSG00000169811.8;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;gene_id=HG003_chrY_G0000571;gene_biotype=unprocessed_pseudogene;gene_name=RBMY1HP;gene_sources=liftoff;ID=HG003_chrY_G0000571;Name=RBMY1HP
HG003_chrY	CAT	transcript	22322986	22331434	1000	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_G0000571;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=HG003_chrY_T0001692;Name=RBMY1HP
HG003_chrY	CAT	exon	22322986	22323163	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=exon:HG003_chrY_T0001692:0;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22323164	22325076	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=intron:HG003_chrY_T0001692:0;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22325077	22325229	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=exon:HG003_chrY_T0001692:1;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22325230	22327239	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=intron:HG003_chrY_T0001692:1;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22327240	22327354	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=exon:HG003_chrY_T0001692:2;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22327355	22328309	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=intron:HG003_chrY_T0001692:2;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22328310	22328420	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=exon:HG003_chrY_T0001692:3;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22328421	22328861	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=intron:HG003_chrY_T0001692:3;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22328862	22328972	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=exon:HG003_chrY_T0001692:4;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22328973	22329406	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=intron:HG003_chrY_T0001692:4;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22329407	22329517	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=exon:HG003_chrY_T0001692:5;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22329518	22329950	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=intron:HG003_chrY_T0001692:5;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22329951	22330061	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=exon:HG003_chrY_T0001692:6;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22330062	22330438	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=intron:HG003_chrY_T0001692:6;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22330439	22330549	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=exon:HG003_chrY_T0001692:7;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22330550	22330635	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=intron:HG003_chrY_T0001692:7;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22330636	22330724	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=exon:HG003_chrY_T0001692:8;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22330725	22331135	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=intron:HG003_chrY_T0001692:8;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22331136	22331434	.	+	.	source_transcript=ENST00000382759.2;source_transcript_name=RBMY1HP-201;source_gene=ENSG00000169811.8;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000169811.8;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000382759.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382759.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1HP;alternative_source_transcripts=ENST00000382759.2,ENST00000382759.2;transcript_id=HG003_chrY_T0001692;gene_id=HG003_chrY_G0000571;Parent=HG003_chrY_T0001692;transcript_name=HG003_chrY_T0001692;gene_name=RBMY1HP;ID=exon:HG003_chrY_T0001692:9;Name=RBMY1HP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22337765	22339936	.	-	.	source_gene_common_name=ENSG00000242393;source_gene=ENSG00000242393.1;alternative_source_transcripts=ENST00000456659.1,ENST00000456659.1;gene_id=HG003_chrY_G0000572;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000242393;gene_sources=liftoff;ID=HG003_chrY_G0000572;Name=ENSG00000242393
HG003_chrY	CAT	transcript	22337765	22339936	1000	-	.	source_transcript=ENST00000456659.1;source_transcript_name=ENST00000456659;source_gene=ENSG00000242393.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000242393.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456659.1;transcript_score=299.861;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000242393;alternative_source_transcripts=ENST00000456659.1,ENST00000456659.1;transcript_id=HG003_chrY_T0001693;gene_id=HG003_chrY_G0000572;Parent=HG003_chrY_G0000572;transcript_name=HG003_chrY_T0001693;gene_name=ENSG00000242393;ID=HG003_chrY_T0001693;Name=ENSG00000242393
HG003_chrY	CAT	exon	22337765	22337812	.	-	.	source_transcript=ENST00000456659.1;source_transcript_name=ENST00000456659;source_gene=ENSG00000242393.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000242393.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456659.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000242393;alternative_source_transcripts=ENST00000456659.1,ENST00000456659.1;transcript_id=HG003_chrY_T0001693;gene_id=HG003_chrY_G0000572;Parent=HG003_chrY_T0001693;transcript_name=HG003_chrY_T0001693;gene_name=ENSG00000242393;ID=exon:HG003_chrY_T0001693:0;Name=ENSG00000242393;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22337813	22337929	.	-	.	source_transcript=ENST00000456659.1;source_transcript_name=ENST00000456659;source_gene=ENSG00000242393.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000242393.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456659.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000242393;alternative_source_transcripts=ENST00000456659.1,ENST00000456659.1;transcript_id=HG003_chrY_T0001693;gene_id=HG003_chrY_G0000572;Parent=HG003_chrY_T0001693;transcript_name=HG003_chrY_T0001693;gene_name=ENSG00000242393;ID=intron:HG003_chrY_T0001693:0;Name=ENSG00000242393;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22337930	22338075	.	-	.	source_transcript=ENST00000456659.1;source_transcript_name=ENST00000456659;source_gene=ENSG00000242393.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000242393.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456659.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000242393;alternative_source_transcripts=ENST00000456659.1,ENST00000456659.1;transcript_id=HG003_chrY_T0001693;gene_id=HG003_chrY_G0000572;Parent=HG003_chrY_T0001693;transcript_name=HG003_chrY_T0001693;gene_name=ENSG00000242393;ID=exon:HG003_chrY_T0001693:1;Name=ENSG00000242393;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22338076	22338161	.	-	.	source_transcript=ENST00000456659.1;source_transcript_name=ENST00000456659;source_gene=ENSG00000242393.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000242393.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456659.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000242393;alternative_source_transcripts=ENST00000456659.1,ENST00000456659.1;transcript_id=HG003_chrY_T0001693;gene_id=HG003_chrY_G0000572;Parent=HG003_chrY_T0001693;transcript_name=HG003_chrY_T0001693;gene_name=ENSG00000242393;ID=intron:HG003_chrY_T0001693:1;Name=ENSG00000242393;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22338162	22338225	.	-	.	source_transcript=ENST00000456659.1;source_transcript_name=ENST00000456659;source_gene=ENSG00000242393.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000242393.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456659.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000242393;alternative_source_transcripts=ENST00000456659.1,ENST00000456659.1;transcript_id=HG003_chrY_T0001693;gene_id=HG003_chrY_G0000572;Parent=HG003_chrY_T0001693;transcript_name=HG003_chrY_T0001693;gene_name=ENSG00000242393;ID=exon:HG003_chrY_T0001693:2;Name=ENSG00000242393;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22338226	22338488	.	-	.	source_transcript=ENST00000456659.1;source_transcript_name=ENST00000456659;source_gene=ENSG00000242393.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000242393.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456659.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000242393;alternative_source_transcripts=ENST00000456659.1,ENST00000456659.1;transcript_id=HG003_chrY_T0001693;gene_id=HG003_chrY_G0000572;Parent=HG003_chrY_T0001693;transcript_name=HG003_chrY_T0001693;gene_name=ENSG00000242393;ID=intron:HG003_chrY_T0001693:2;Name=ENSG00000242393;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22338489	22338554	.	-	.	source_transcript=ENST00000456659.1;source_transcript_name=ENST00000456659;source_gene=ENSG00000242393.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000242393.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456659.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000242393;alternative_source_transcripts=ENST00000456659.1,ENST00000456659.1;transcript_id=HG003_chrY_T0001693;gene_id=HG003_chrY_G0000572;Parent=HG003_chrY_T0001693;transcript_name=HG003_chrY_T0001693;gene_name=ENSG00000242393;ID=exon:HG003_chrY_T0001693:3;Name=ENSG00000242393;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22338555	22339543	.	-	.	source_transcript=ENST00000456659.1;source_transcript_name=ENST00000456659;source_gene=ENSG00000242393.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000242393.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456659.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000242393;alternative_source_transcripts=ENST00000456659.1,ENST00000456659.1;transcript_id=HG003_chrY_T0001693;gene_id=HG003_chrY_G0000572;Parent=HG003_chrY_T0001693;transcript_name=HG003_chrY_T0001693;gene_name=ENSG00000242393;ID=intron:HG003_chrY_T0001693:3;Name=ENSG00000242393;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22339544	22339936	.	-	.	source_transcript=ENST00000456659.1;source_transcript_name=ENST00000456659;source_gene=ENSG00000242393.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000242393.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456659.1;transcript_score=299.861;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000242393;alternative_source_transcripts=ENST00000456659.1,ENST00000456659.1;transcript_id=HG003_chrY_T0001693;gene_id=HG003_chrY_G0000572;Parent=HG003_chrY_T0001693;transcript_name=HG003_chrY_T0001693;gene_name=ENSG00000242393;ID=exon:HG003_chrY_T0001693:4;Name=ENSG00000242393;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22340804	22355242	.	+	.	source_gene_common_name=RBMY1B;source_gene=ENSG00000242875.7;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;gene_id=HG003_chrY_G0000573;gene_biotype=protein_coding;gene_name=RBMY1B;gene_sources=liftoff;ID=HG003_chrY_G0000573;Name=RBMY1B
HG003_chrY	CAT	transcript	22340804	22355242	100	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_G0000573;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=HG003_chrY_T0001694;Name=RBMY1B
HG003_chrY	CAT	exon	22340804	22340951	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001694:0;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22340952	22342812	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001694:0;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22342813	22342925	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001694:1;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22342817	22342925	.	+	0	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001694:0;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22342817	22342819	.	+	0	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=start_codon:HG003_chrY_T0001694;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22342926	22343389	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001694:1;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22343390	22343493	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001694:2;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22343390	22343493	.	+	2	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001694:1;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22343494	22346512	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001694:2;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22346513	22346690	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001694:3;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22346513	22346690	.	+	0	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001694:2;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22346691	22348605	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001694:3;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22348606	22348758	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001694:4;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22348606	22348758	.	+	2	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001694:3;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22348759	22350768	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001694:4;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22350769	22350883	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001694:5;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22350769	22350883	.	+	2	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001694:4;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22350884	22351838	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001694:5;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22351839	22351949	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001694:6;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22351839	22351949	.	+	1	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001694:5;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22351950	22352390	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001694:6;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22352391	22352501	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001694:7;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22352391	22352501	.	+	1	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001694:6;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22352502	22352935	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001694:7;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22352936	22353046	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001694:8;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22352936	22353046	.	+	1	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001694:7;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22353047	22353967	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001694:8;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22353968	22354078	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001694:9;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22353968	22354078	.	+	1	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001694:8;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22354079	22354165	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001694:9;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22354166	22354254	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001694:10;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22354166	22354254	.	+	1	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001694:9;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22354255	22354665	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001694:10;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22354666	22355242	.	+	.	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001694:11;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22354666	22354964	.	+	2	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001694:10;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22354962	22354964	.	+	0	source_transcript=ENST00000383020.7;source_transcript_name=RBMY1B-202;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000383020.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000383020.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000383020.7,ENST00000383020.7;transcript_id=HG003_chrY_T0001694;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001694;transcript_name=HG003_chrY_T0001694;gene_name=RBMY1B;ID=stop_codon:HG003_chrY_T0001694;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22340829	22355242	1000	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_G0000573;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=HG003_chrY_T0001695;Name=RBMY1B
HG003_chrY	CAT	exon	22340829	22340951	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001695:0;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22340952	22342812	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001695:0;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22342813	22342925	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001695:1;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22342817	22342925	.	+	0	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001695:0;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22342817	22342819	.	+	0	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=start_codon:HG003_chrY_T0001695;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22342926	22343389	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001695:1;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22343390	22343493	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001695:2;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22343390	22343493	.	+	2	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001695:1;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22343494	22348605	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001695:2;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22348606	22348758	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001695:3;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22348606	22348638	.	+	0	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=CDS:HG003_chrY_T0001695:2;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22348636	22348638	.	+	0	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=stop_codon:HG003_chrY_T0001695;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22348759	22350768	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001695:3;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22350769	22350883	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001695:4;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22350884	22351838	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001695:4;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22351839	22351949	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001695:5;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22351950	22352390	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001695:5;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22352391	22352501	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001695:6;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22352502	22352935	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001695:6;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22352936	22353046	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001695:7;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22353047	22353967	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001695:7;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22353968	22354078	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001695:8;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22354079	22354165	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001695:8;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22354166	22354254	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001695:9;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22354255	22354665	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=intron:HG003_chrY_T0001695:9;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22354666	22355242	.	+	.	source_transcript=ENST00000382639.7;source_transcript_name=RBMY1B-201;source_gene=ENSG00000242875.7;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242875.7;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382639.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382639.7;transcript_score=299.884;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1B;alternative_source_transcripts=ENST00000382639.7,ENST00000382639.7;transcript_id=HG003_chrY_T0001695;gene_id=HG003_chrY_G0000573;Parent=HG003_chrY_T0001695;transcript_name=HG003_chrY_T0001695;gene_name=RBMY1B;ID=exon:HG003_chrY_T0001695:10;Name=RBMY1B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22361295	22363466	.	-	.	source_gene_common_name=ENSG00000228257;source_gene=ENSG00000228257.1;alternative_source_transcripts=ENST00000452426.1,ENST00000452426.1;gene_id=HG003_chrY_G0000574;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000228257;gene_sources=liftoff;ID=HG003_chrY_G0000574;Name=ENSG00000228257
HG003_chrY	CAT	transcript	22361295	22363466	1000	-	.	source_transcript=ENST00000452426.1;source_transcript_name=ENST00000452426;source_gene=ENSG00000228257.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228257.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452426.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228257;alternative_source_transcripts=ENST00000452426.1,ENST00000452426.1;transcript_id=HG003_chrY_T0001696;gene_id=HG003_chrY_G0000574;Parent=HG003_chrY_G0000574;transcript_name=HG003_chrY_T0001696;gene_name=ENSG00000228257;ID=HG003_chrY_T0001696;Name=ENSG00000228257
HG003_chrY	CAT	exon	22361295	22361342	.	-	.	source_transcript=ENST00000452426.1;source_transcript_name=ENST00000452426;source_gene=ENSG00000228257.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228257.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228257;alternative_source_transcripts=ENST00000452426.1,ENST00000452426.1;transcript_id=HG003_chrY_T0001696;gene_id=HG003_chrY_G0000574;Parent=HG003_chrY_T0001696;transcript_name=HG003_chrY_T0001696;gene_name=ENSG00000228257;ID=exon:HG003_chrY_T0001696:0;Name=ENSG00000228257;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22361343	22361459	.	-	.	source_transcript=ENST00000452426.1;source_transcript_name=ENST00000452426;source_gene=ENSG00000228257.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228257.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228257;alternative_source_transcripts=ENST00000452426.1,ENST00000452426.1;transcript_id=HG003_chrY_T0001696;gene_id=HG003_chrY_G0000574;Parent=HG003_chrY_T0001696;transcript_name=HG003_chrY_T0001696;gene_name=ENSG00000228257;ID=intron:HG003_chrY_T0001696:0;Name=ENSG00000228257;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22361460	22361605	.	-	.	source_transcript=ENST00000452426.1;source_transcript_name=ENST00000452426;source_gene=ENSG00000228257.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228257.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228257;alternative_source_transcripts=ENST00000452426.1,ENST00000452426.1;transcript_id=HG003_chrY_T0001696;gene_id=HG003_chrY_G0000574;Parent=HG003_chrY_T0001696;transcript_name=HG003_chrY_T0001696;gene_name=ENSG00000228257;ID=exon:HG003_chrY_T0001696:1;Name=ENSG00000228257;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22361606	22361691	.	-	.	source_transcript=ENST00000452426.1;source_transcript_name=ENST00000452426;source_gene=ENSG00000228257.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228257.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228257;alternative_source_transcripts=ENST00000452426.1,ENST00000452426.1;transcript_id=HG003_chrY_T0001696;gene_id=HG003_chrY_G0000574;Parent=HG003_chrY_T0001696;transcript_name=HG003_chrY_T0001696;gene_name=ENSG00000228257;ID=intron:HG003_chrY_T0001696:1;Name=ENSG00000228257;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22361692	22361755	.	-	.	source_transcript=ENST00000452426.1;source_transcript_name=ENST00000452426;source_gene=ENSG00000228257.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228257.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228257;alternative_source_transcripts=ENST00000452426.1,ENST00000452426.1;transcript_id=HG003_chrY_T0001696;gene_id=HG003_chrY_G0000574;Parent=HG003_chrY_T0001696;transcript_name=HG003_chrY_T0001696;gene_name=ENSG00000228257;ID=exon:HG003_chrY_T0001696:2;Name=ENSG00000228257;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22361756	22362018	.	-	.	source_transcript=ENST00000452426.1;source_transcript_name=ENST00000452426;source_gene=ENSG00000228257.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228257.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228257;alternative_source_transcripts=ENST00000452426.1,ENST00000452426.1;transcript_id=HG003_chrY_T0001696;gene_id=HG003_chrY_G0000574;Parent=HG003_chrY_T0001696;transcript_name=HG003_chrY_T0001696;gene_name=ENSG00000228257;ID=intron:HG003_chrY_T0001696:2;Name=ENSG00000228257;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22362019	22362084	.	-	.	source_transcript=ENST00000452426.1;source_transcript_name=ENST00000452426;source_gene=ENSG00000228257.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228257.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228257;alternative_source_transcripts=ENST00000452426.1,ENST00000452426.1;transcript_id=HG003_chrY_T0001696;gene_id=HG003_chrY_G0000574;Parent=HG003_chrY_T0001696;transcript_name=HG003_chrY_T0001696;gene_name=ENSG00000228257;ID=exon:HG003_chrY_T0001696:3;Name=ENSG00000228257;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22362085	22363069	.	-	.	source_transcript=ENST00000452426.1;source_transcript_name=ENST00000452426;source_gene=ENSG00000228257.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228257.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228257;alternative_source_transcripts=ENST00000452426.1,ENST00000452426.1;transcript_id=HG003_chrY_T0001696;gene_id=HG003_chrY_G0000574;Parent=HG003_chrY_T0001696;transcript_name=HG003_chrY_T0001696;gene_name=ENSG00000228257;ID=intron:HG003_chrY_T0001696:3;Name=ENSG00000228257;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22363070	22363466	.	-	.	source_transcript=ENST00000452426.1;source_transcript_name=ENST00000452426;source_gene=ENSG00000228257.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228257.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452426.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000228257;alternative_source_transcripts=ENST00000452426.1,ENST00000452426.1;transcript_id=HG003_chrY_T0001696;gene_id=HG003_chrY_G0000574;Parent=HG003_chrY_T0001696;transcript_name=HG003_chrY_T0001696;gene_name=ENSG00000228257;ID=exon:HG003_chrY_T0001696:4;Name=ENSG00000228257;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22364334	22378782	.	+	.	source_gene_common_name=RBMY1D;source_gene=ENSG00000244395.6;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;gene_id=HG003_chrY_G0000575;gene_biotype=protein_coding;gene_name=RBMY1D;gene_sources=liftoff;ID=HG003_chrY_G0000575;Name=RBMY1D
HG003_chrY	CAT	transcript	22364334	22378782	100	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_G0000575;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=HG003_chrY_T0001697;Name=RBMY1D
HG003_chrY	CAT	exon	22364334	22364481	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001697:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22364482	22366342	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001697:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366343	22366455	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001697:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366347	22366455	.	+	0	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001697:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22366347	22366349	.	+	0	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=start_codon:HG003_chrY_T0001697;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22366456	22366929	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001697:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366930	22367033	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001697:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366930	22367033	.	+	2	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001697:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22367034	22370052	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001697:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22370053	22370230	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001697:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22370053	22370230	.	+	0	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001697:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22370231	22372145	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001697:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22372146	22372298	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001697:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22372146	22372298	.	+	2	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001697:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22372299	22374308	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001697:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22374309	22374423	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001697:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22374309	22374423	.	+	2	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001697:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22374424	22375378	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001697:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375379	22375489	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001697:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375379	22375489	.	+	1	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001697:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22375490	22375930	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001697:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375931	22376041	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001697:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375931	22376041	.	+	1	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001697:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376042	22376475	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001697:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22376476	22376586	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001697:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22376476	22376586	.	+	1	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001697:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376587	22377507	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001697:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377508	22377618	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001697:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377508	22377618	.	+	1	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001697:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377619	22377705	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001697:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377706	22377794	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001697:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377706	22377794	.	+	1	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001697:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377795	22378205	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001697:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22378206	22378782	.	+	.	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001697:11;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22378206	22378504	.	+	2	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001697:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22378502	22378504	.	+	0	source_transcript=ENST00000382680.5;source_transcript_name=RBMY1D-202;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382680.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382680.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000382707.6,ENST00000382707.6;transcript_id=HG003_chrY_T0001697;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001697;transcript_name=HG003_chrY_T0001697;gene_name=RBMY1D;ID=stop_codon:HG003_chrY_T0001697;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22364359	22378782	1000	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_G0000575;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=HG003_chrY_T0001698;Name=RBMY1D
HG003_chrY	CAT	exon	22364359	22364481	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001698:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22364482	22366342	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001698:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366343	22366455	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001698:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366347	22366455	.	+	0	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001698:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22366347	22366349	.	+	0	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=start_codon:HG003_chrY_T0001698;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22366456	22366929	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001698:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366930	22367033	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001698:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366930	22367033	.	+	2	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001698:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22367034	22372145	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001698:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22372146	22372298	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001698:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22372146	22372178	.	+	0	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001698:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22372176	22372178	.	+	0	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=stop_codon:HG003_chrY_T0001698;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22372299	22374308	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001698:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22374309	22374423	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001698:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22374424	22375378	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001698:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375379	22375489	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001698:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22375490	22375930	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001698:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375931	22376041	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001698:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376042	22376475	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001698:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22376476	22376586	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001698:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376587	22377507	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001698:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377508	22377618	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001698:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377619	22377705	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001698:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377706	22377794	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001698:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377795	22378205	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001698:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22378206	22378782	.	+	.	source_transcript=ENST00000382653.6;source_transcript_name=RBMY1D-201;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000382653.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382653.6;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;alternative_source_transcripts=ENST00000361046.4,ENST00000361046.4;transcript_id=HG003_chrY_T0001698;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001698;transcript_name=HG003_chrY_T0001698;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001698:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22364421	22378550	100	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_G0000575;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=HG003_chrY_T0001699;Name=RBMY1D
HG003_chrY	CAT	exon	22364421	22364481	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001699:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22364482	22366342	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001699:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366343	22366455	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001699:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366347	22366455	.	+	0	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001699:0;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22366347	22366349	.	+	0	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=start_codon:HG003_chrY_T0001699;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22366456	22366929	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001699:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22366930	22367033	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001699:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22366930	22367033	.	+	2	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001699:1;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22367034	22370052	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001699:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22370053	22370230	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001699:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22370053	22370230	.	+	0	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001699:2;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22370231	22372145	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001699:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22372146	22372298	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001699:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22372146	22372298	.	+	2	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001699:3;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22372299	22374308	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001699:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22374309	22374423	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001699:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22374309	22374423	.	+	2	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001699:4;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22374424	22375378	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001699:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375379	22375489	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001699:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375379	22375489	.	+	1	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001699:5;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22375490	22375930	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001699:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22375931	22376041	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001699:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22375931	22376041	.	+	1	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001699:6;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376042	22376475	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001699:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22376476	22376586	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001699:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22376476	22376586	.	+	1	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001699:7;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22376587	22377705	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001699:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22377706	22377794	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001699:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22377706	22377794	.	+	1	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001699:8;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22377795	22378205	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=intron:HG003_chrY_T0001699:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22378206	22378550	.	+	.	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=exon:HG003_chrY_T0001699:10;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22378206	22378504	.	+	2	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=CDS:HG003_chrY_T0001699:9;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22378502	22378504	.	+	0	source_transcript=ENST00000418956.2;source_transcript_name=RBMY1D-203;source_gene=ENSG00000244395.6;source_gene_biotype=protein_coding;original_gene_id=ENSG00000244395.6;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000418956.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000418956.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1D;transcript_id=HG003_chrY_T0001699;gene_id=HG003_chrY_G0000575;Parent=HG003_chrY_T0001699;transcript_name=HG003_chrY_T0001699;gene_name=RBMY1D;ID=stop_codon:HG003_chrY_T0001699;Name=RBMY1D;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22385306	22387525	.	-	.	source_gene_common_name=ENSG00000229725;source_gene=ENSG00000229725.1;gene_id=HG003_chrY_G0000576;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000229725;gene_sources=liftoff;ID=HG003_chrY_G0000576;Name=ENSG00000229725
HG003_chrY	CAT	transcript	22385306	22387525	1000	-	.	source_transcript=ENST00000414540.1;source_transcript_name=ENST00000414540;source_gene=ENSG00000229725.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229725.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414540.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414540.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229725;transcript_id=HG003_chrY_T0001700;gene_id=HG003_chrY_G0000576;Parent=HG003_chrY_G0000576;transcript_name=HG003_chrY_T0001700;gene_name=ENSG00000229725;ID=HG003_chrY_T0001700;Name=ENSG00000229725
HG003_chrY	CAT	exon	22385306	22385355	.	-	.	source_transcript=ENST00000414540.1;source_transcript_name=ENST00000414540;source_gene=ENSG00000229725.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229725.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414540.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414540.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229725;transcript_id=HG003_chrY_T0001700;gene_id=HG003_chrY_G0000576;Parent=HG003_chrY_T0001700;transcript_name=HG003_chrY_T0001700;gene_name=ENSG00000229725;ID=exon:HG003_chrY_T0001700:0;Name=ENSG00000229725;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22385356	22385726	.	-	.	source_transcript=ENST00000414540.1;source_transcript_name=ENST00000414540;source_gene=ENSG00000229725.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229725.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414540.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414540.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229725;transcript_id=HG003_chrY_T0001700;gene_id=HG003_chrY_G0000576;Parent=HG003_chrY_T0001700;transcript_name=HG003_chrY_T0001700;gene_name=ENSG00000229725;ID=intron:HG003_chrY_T0001700:0;Name=ENSG00000229725;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22385727	22385894	.	-	.	source_transcript=ENST00000414540.1;source_transcript_name=ENST00000414540;source_gene=ENSG00000229725.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229725.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414540.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414540.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229725;transcript_id=HG003_chrY_T0001700;gene_id=HG003_chrY_G0000576;Parent=HG003_chrY_T0001700;transcript_name=HG003_chrY_T0001700;gene_name=ENSG00000229725;ID=exon:HG003_chrY_T0001700:1;Name=ENSG00000229725;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22385895	22387138	.	-	.	source_transcript=ENST00000414540.1;source_transcript_name=ENST00000414540;source_gene=ENSG00000229725.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229725.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414540.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414540.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229725;transcript_id=HG003_chrY_T0001700;gene_id=HG003_chrY_G0000576;Parent=HG003_chrY_T0001700;transcript_name=HG003_chrY_T0001700;gene_name=ENSG00000229725;ID=intron:HG003_chrY_T0001700:1;Name=ENSG00000229725;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22387139	22387525	.	-	.	source_transcript=ENST00000414540.1;source_transcript_name=ENST00000414540;source_gene=ENSG00000229725.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229725.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414540.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414540.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229725;transcript_id=HG003_chrY_T0001700;gene_id=HG003_chrY_G0000576;Parent=HG003_chrY_T0001700;transcript_name=HG003_chrY_T0001700;gene_name=ENSG00000229725;ID=exon:HG003_chrY_T0001700:2;Name=ENSG00000229725;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22394538	22434520	.	-	.	source_gene_common_name=TTTY13;source_gene=ENSG00000184991.3;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;gene_id=HG003_chrY_G0000577;gene_biotype=lncRNA;gene_name=TTTY13;gene_sources=liftoff;ID=HG003_chrY_G0000577;Name=TTTY13
HG003_chrY	CAT	transcript	22394538	22434520	1000	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_G0000577;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=HG003_chrY_T0001701;Name=TTTY13
HG003_chrY	CAT	exon	22394538	22395635	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=exon:HG003_chrY_T0001701:0;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22395636	22395779	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=intron:HG003_chrY_T0001701:0;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22395780	22395854	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=exon:HG003_chrY_T0001701:1;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22395855	22400441	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=intron:HG003_chrY_T0001701:1;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22400442	22400600	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=exon:HG003_chrY_T0001701:2;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22400601	22412962	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=intron:HG003_chrY_T0001701:2;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22412963	22413104	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=exon:HG003_chrY_T0001701:3;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22413105	22414224	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=intron:HG003_chrY_T0001701:3;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22414225	22414316	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=exon:HG003_chrY_T0001701:4;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22414317	22416942	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=intron:HG003_chrY_T0001701:4;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22416943	22417104	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=exon:HG003_chrY_T0001701:5;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22417105	22434306	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=intron:HG003_chrY_T0001701:5;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22434307	22434520	.	-	.	source_transcript=ENST00000652128.1;source_transcript_name=TTTY13-202;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000652128.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000652128.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000652128.1,ENST00000652128.1;transcript_id=HG003_chrY_T0001701;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001701;transcript_name=HG003_chrY_T0001701;gene_name=TTTY13;ID=exon:HG003_chrY_T0001701:6;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22413042	22424108	1000	-	.	source_transcript=ENST00000330337.2;source_transcript_name=TTTY13-201;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000330337.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000330337.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000330337.2,ENST00000330337.2;transcript_id=HG003_chrY_T0001702;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_G0000577;transcript_name=HG003_chrY_T0001702;gene_name=TTTY13;ID=HG003_chrY_T0001702;Name=TTTY13
HG003_chrY	CAT	exon	22413042	22413104	.	-	.	source_transcript=ENST00000330337.2;source_transcript_name=TTTY13-201;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000330337.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000330337.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000330337.2,ENST00000330337.2;transcript_id=HG003_chrY_T0001702;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001702;transcript_name=HG003_chrY_T0001702;gene_name=TTTY13;ID=exon:HG003_chrY_T0001702:0;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22413105	22414224	.	-	.	source_transcript=ENST00000330337.2;source_transcript_name=TTTY13-201;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000330337.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000330337.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000330337.2,ENST00000330337.2;transcript_id=HG003_chrY_T0001702;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001702;transcript_name=HG003_chrY_T0001702;gene_name=TTTY13;ID=intron:HG003_chrY_T0001702:0;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22414225	22414316	.	-	.	source_transcript=ENST00000330337.2;source_transcript_name=TTTY13-201;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000330337.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000330337.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000330337.2,ENST00000330337.2;transcript_id=HG003_chrY_T0001702;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001702;transcript_name=HG003_chrY_T0001702;gene_name=TTTY13;ID=exon:HG003_chrY_T0001702:1;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22414317	22416942	.	-	.	source_transcript=ENST00000330337.2;source_transcript_name=TTTY13-201;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000330337.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000330337.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000330337.2,ENST00000330337.2;transcript_id=HG003_chrY_T0001702;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001702;transcript_name=HG003_chrY_T0001702;gene_name=TTTY13;ID=intron:HG003_chrY_T0001702:1;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22416943	22417104	.	-	.	source_transcript=ENST00000330337.2;source_transcript_name=TTTY13-201;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000330337.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000330337.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000330337.2,ENST00000330337.2;transcript_id=HG003_chrY_T0001702;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001702;transcript_name=HG003_chrY_T0001702;gene_name=TTTY13;ID=exon:HG003_chrY_T0001702:2;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22417105	22418713	.	-	.	source_transcript=ENST00000330337.2;source_transcript_name=TTTY13-201;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000330337.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000330337.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000330337.2,ENST00000330337.2;transcript_id=HG003_chrY_T0001702;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001702;transcript_name=HG003_chrY_T0001702;gene_name=TTTY13;ID=intron:HG003_chrY_T0001702:2;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22418714	22418812	.	-	.	source_transcript=ENST00000330337.2;source_transcript_name=TTTY13-201;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000330337.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000330337.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000330337.2,ENST00000330337.2;transcript_id=HG003_chrY_T0001702;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001702;transcript_name=HG003_chrY_T0001702;gene_name=TTTY13;ID=exon:HG003_chrY_T0001702:3;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22418813	22419407	.	-	.	source_transcript=ENST00000330337.2;source_transcript_name=TTTY13-201;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000330337.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000330337.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000330337.2,ENST00000330337.2;transcript_id=HG003_chrY_T0001702;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001702;transcript_name=HG003_chrY_T0001702;gene_name=TTTY13;ID=intron:HG003_chrY_T0001702:3;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22419408	22419569	.	-	.	source_transcript=ENST00000330337.2;source_transcript_name=TTTY13-201;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000330337.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000330337.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000330337.2,ENST00000330337.2;transcript_id=HG003_chrY_T0001702;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001702;transcript_name=HG003_chrY_T0001702;gene_name=TTTY13;ID=exon:HG003_chrY_T0001702:4;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22419570	22424027	.	-	.	source_transcript=ENST00000330337.2;source_transcript_name=TTTY13-201;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000330337.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000330337.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000330337.2,ENST00000330337.2;transcript_id=HG003_chrY_T0001702;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001702;transcript_name=HG003_chrY_T0001702;gene_name=TTTY13;ID=intron:HG003_chrY_T0001702:4;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22424028	22424108	.	-	.	source_transcript=ENST00000330337.2;source_transcript_name=TTTY13-201;source_gene=ENSG00000184991.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000184991.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000330337.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000330337.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY13;alternative_source_transcripts=ENST00000330337.2,ENST00000330337.2;transcript_id=HG003_chrY_T0001702;gene_id=HG003_chrY_G0000577;Parent=HG003_chrY_T0001702;transcript_name=HG003_chrY_T0001702;gene_name=TTTY13;ID=exon:HG003_chrY_T0001702:5;Name=TTTY13;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22461122	22461454	.	-	.	source_gene_common_name=ELOCP5;source_gene=ENSG00000271123.1;alternative_source_transcripts=ENST00000604924.1,ENST00000604924.1;gene_id=HG003_chrY_G0000578;gene_biotype=processed_pseudogene;gene_name=ELOCP5;gene_sources=liftoff;ID=HG003_chrY_G0000578;Name=ELOCP5
HG003_chrY	CAT	transcript	22461122	22461454	1000	-	.	source_transcript=ENST00000604924.1;source_transcript_name=ELOCP5-201;source_gene=ENSG00000271123.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000271123.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000604924.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000604924.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP5;alternative_source_transcripts=ENST00000604924.1,ENST00000604924.1;transcript_id=HG003_chrY_T0001703;gene_id=HG003_chrY_G0000578;Parent=HG003_chrY_G0000578;transcript_name=HG003_chrY_T0001703;gene_name=ELOCP5;ID=HG003_chrY_T0001703;Name=ELOCP5
HG003_chrY	CAT	exon	22461122	22461454	.	-	.	source_transcript=ENST00000604924.1;source_transcript_name=ELOCP5-201;source_gene=ENSG00000271123.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000271123.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000604924.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000604924.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP5;alternative_source_transcripts=ENST00000604924.1,ENST00000604924.1;transcript_id=HG003_chrY_T0001703;gene_id=HG003_chrY_G0000578;Parent=HG003_chrY_T0001703;transcript_name=HG003_chrY_T0001703;gene_name=ELOCP5;ID=exon:HG003_chrY_T0001703:0;Name=ELOCP5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22466914	22468480	.	-	.	source_gene_common_name=CDY10P;source_gene=ENSG00000226042.1;alternative_source_transcripts=ENST00000452415.1,ENST00000452415.1;gene_id=HG003_chrY_G0000579;gene_biotype=unprocessed_pseudogene;gene_name=CDY10P;gene_sources=liftoff;ID=HG003_chrY_G0000579;Name=CDY10P
HG003_chrY	CAT	transcript	22466914	22468480	1000	-	.	source_transcript=ENST00000452415.1;source_transcript_name=CDY10P-201;source_gene=ENSG00000226042.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226042.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452415.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452415.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY10P;alternative_source_transcripts=ENST00000452415.1,ENST00000452415.1;transcript_id=HG003_chrY_T0001704;gene_id=HG003_chrY_G0000579;Parent=HG003_chrY_G0000579;transcript_name=HG003_chrY_T0001704;gene_name=CDY10P;ID=HG003_chrY_T0001704;Name=CDY10P
HG003_chrY	CAT	exon	22466914	22468480	.	-	.	source_transcript=ENST00000452415.1;source_transcript_name=CDY10P-201;source_gene=ENSG00000226042.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226042.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000452415.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000452415.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY10P;alternative_source_transcripts=ENST00000452415.1,ENST00000452415.1;transcript_id=HG003_chrY_T0001704;gene_id=HG003_chrY_G0000579;Parent=HG003_chrY_T0001704;transcript_name=HG003_chrY_T0001704;gene_name=CDY10P;ID=exon:HG003_chrY_T0001704:0;Name=CDY10P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22491365	22503696	.	+	.	source_gene_common_name=USP9YP3;source_gene=ENSG00000237023.1;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;gene_id=HG003_chrY_G0000580;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP3;gene_sources=liftoff;ID=HG003_chrY_G0000580;Name=USP9YP3
HG003_chrY	CAT	transcript	22491365	22503696	1000	+	.	source_transcript=ENST00000434481.1;source_transcript_name=USP9YP3-201;source_gene=ENSG00000237023.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237023.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434481.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP3;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;transcript_id=HG003_chrY_T0001705;gene_id=HG003_chrY_G0000580;Parent=HG003_chrY_G0000580;transcript_name=HG003_chrY_T0001705;gene_name=USP9YP3;ID=HG003_chrY_T0001705;Name=USP9YP3
HG003_chrY	CAT	exon	22491365	22491581	.	+	.	source_transcript=ENST00000434481.1;source_transcript_name=USP9YP3-201;source_gene=ENSG00000237023.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237023.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP3;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;transcript_id=HG003_chrY_T0001705;gene_id=HG003_chrY_G0000580;Parent=HG003_chrY_T0001705;transcript_name=HG003_chrY_T0001705;gene_name=USP9YP3;ID=exon:HG003_chrY_T0001705:0;Name=USP9YP3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22491582	22494199	.	+	.	source_transcript=ENST00000434481.1;source_transcript_name=USP9YP3-201;source_gene=ENSG00000237023.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237023.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP3;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;transcript_id=HG003_chrY_T0001705;gene_id=HG003_chrY_G0000580;Parent=HG003_chrY_T0001705;transcript_name=HG003_chrY_T0001705;gene_name=USP9YP3;ID=intron:HG003_chrY_T0001705:0;Name=USP9YP3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22494200	22494414	.	+	.	source_transcript=ENST00000434481.1;source_transcript_name=USP9YP3-201;source_gene=ENSG00000237023.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237023.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP3;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;transcript_id=HG003_chrY_T0001705;gene_id=HG003_chrY_G0000580;Parent=HG003_chrY_T0001705;transcript_name=HG003_chrY_T0001705;gene_name=USP9YP3;ID=exon:HG003_chrY_T0001705:1;Name=USP9YP3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22494415	22496535	.	+	.	source_transcript=ENST00000434481.1;source_transcript_name=USP9YP3-201;source_gene=ENSG00000237023.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237023.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP3;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;transcript_id=HG003_chrY_T0001705;gene_id=HG003_chrY_G0000580;Parent=HG003_chrY_T0001705;transcript_name=HG003_chrY_T0001705;gene_name=USP9YP3;ID=intron:HG003_chrY_T0001705:1;Name=USP9YP3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22496536	22496713	.	+	.	source_transcript=ENST00000434481.1;source_transcript_name=USP9YP3-201;source_gene=ENSG00000237023.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237023.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP3;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;transcript_id=HG003_chrY_T0001705;gene_id=HG003_chrY_G0000580;Parent=HG003_chrY_T0001705;transcript_name=HG003_chrY_T0001705;gene_name=USP9YP3;ID=exon:HG003_chrY_T0001705:2;Name=USP9YP3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22496714	22499520	.	+	.	source_transcript=ENST00000434481.1;source_transcript_name=USP9YP3-201;source_gene=ENSG00000237023.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237023.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP3;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;transcript_id=HG003_chrY_T0001705;gene_id=HG003_chrY_G0000580;Parent=HG003_chrY_T0001705;transcript_name=HG003_chrY_T0001705;gene_name=USP9YP3;ID=intron:HG003_chrY_T0001705:2;Name=USP9YP3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22499521	22499647	.	+	.	source_transcript=ENST00000434481.1;source_transcript_name=USP9YP3-201;source_gene=ENSG00000237023.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237023.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP3;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;transcript_id=HG003_chrY_T0001705;gene_id=HG003_chrY_G0000580;Parent=HG003_chrY_T0001705;transcript_name=HG003_chrY_T0001705;gene_name=USP9YP3;ID=exon:HG003_chrY_T0001705:3;Name=USP9YP3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22499648	22502257	.	+	.	source_transcript=ENST00000434481.1;source_transcript_name=USP9YP3-201;source_gene=ENSG00000237023.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237023.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP3;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;transcript_id=HG003_chrY_T0001705;gene_id=HG003_chrY_G0000580;Parent=HG003_chrY_T0001705;transcript_name=HG003_chrY_T0001705;gene_name=USP9YP3;ID=intron:HG003_chrY_T0001705:3;Name=USP9YP3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22502258	22503161	.	+	.	source_transcript=ENST00000434481.1;source_transcript_name=USP9YP3-201;source_gene=ENSG00000237023.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237023.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP3;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;transcript_id=HG003_chrY_T0001705;gene_id=HG003_chrY_G0000580;Parent=HG003_chrY_T0001705;transcript_name=HG003_chrY_T0001705;gene_name=USP9YP3;ID=exon:HG003_chrY_T0001705:4;Name=USP9YP3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22503162	22503571	.	+	.	source_transcript=ENST00000434481.1;source_transcript_name=USP9YP3-201;source_gene=ENSG00000237023.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237023.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP3;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;transcript_id=HG003_chrY_T0001705;gene_id=HG003_chrY_G0000580;Parent=HG003_chrY_T0001705;transcript_name=HG003_chrY_T0001705;gene_name=USP9YP3;ID=intron:HG003_chrY_T0001705:4;Name=USP9YP3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22503572	22503696	.	+	.	source_transcript=ENST00000434481.1;source_transcript_name=USP9YP3-201;source_gene=ENSG00000237023.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237023.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP3;alternative_source_transcripts=ENST00000434481.1,ENST00000434481.1;transcript_id=HG003_chrY_T0001705;gene_id=HG003_chrY_G0000580;Parent=HG003_chrY_T0001705;transcript_name=HG003_chrY_T0001705;gene_name=USP9YP3;ID=exon:HG003_chrY_T0001705:5;Name=USP9YP3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22506934	22510806	.	-	.	source_gene_common_name=USP9YP8;source_gene=ENSG00000229416.1;alternative_source_transcripts=ENST00000441913.1,ENST00000441913.1;gene_id=HG003_chrY_G0000581;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP8;gene_sources=liftoff;ID=HG003_chrY_G0000581;Name=USP9YP8
HG003_chrY	CAT	transcript	22506934	22510806	1000	-	.	source_transcript=ENST00000441913.1;source_transcript_name=USP9YP8-201;source_gene=ENSG00000229416.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229416.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000441913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441913.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP8;alternative_source_transcripts=ENST00000441913.1,ENST00000441913.1;transcript_id=HG003_chrY_T0001706;gene_id=HG003_chrY_G0000581;Parent=HG003_chrY_G0000581;transcript_name=HG003_chrY_T0001706;gene_name=USP9YP8;ID=HG003_chrY_T0001706;Name=USP9YP8
HG003_chrY	CAT	exon	22506934	22507123	.	-	.	source_transcript=ENST00000441913.1;source_transcript_name=USP9YP8-201;source_gene=ENSG00000229416.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229416.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000441913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441913.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP8;alternative_source_transcripts=ENST00000441913.1,ENST00000441913.1;transcript_id=HG003_chrY_T0001706;gene_id=HG003_chrY_G0000581;Parent=HG003_chrY_T0001706;transcript_name=HG003_chrY_T0001706;gene_name=USP9YP8;ID=exon:HG003_chrY_T0001706:0;Name=USP9YP8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22507124	22508687	.	-	.	source_transcript=ENST00000441913.1;source_transcript_name=USP9YP8-201;source_gene=ENSG00000229416.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229416.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000441913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441913.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP8;alternative_source_transcripts=ENST00000441913.1,ENST00000441913.1;transcript_id=HG003_chrY_T0001706;gene_id=HG003_chrY_G0000581;Parent=HG003_chrY_T0001706;transcript_name=HG003_chrY_T0001706;gene_name=USP9YP8;ID=intron:HG003_chrY_T0001706:0;Name=USP9YP8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22508688	22508911	.	-	.	source_transcript=ENST00000441913.1;source_transcript_name=USP9YP8-201;source_gene=ENSG00000229416.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229416.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000441913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441913.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP8;alternative_source_transcripts=ENST00000441913.1,ENST00000441913.1;transcript_id=HG003_chrY_T0001706;gene_id=HG003_chrY_G0000581;Parent=HG003_chrY_T0001706;transcript_name=HG003_chrY_T0001706;gene_name=USP9YP8;ID=exon:HG003_chrY_T0001706:1;Name=USP9YP8;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22508912	22510720	.	-	.	source_transcript=ENST00000441913.1;source_transcript_name=USP9YP8-201;source_gene=ENSG00000229416.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229416.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000441913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441913.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP8;alternative_source_transcripts=ENST00000441913.1,ENST00000441913.1;transcript_id=HG003_chrY_T0001706;gene_id=HG003_chrY_G0000581;Parent=HG003_chrY_T0001706;transcript_name=HG003_chrY_T0001706;gene_name=USP9YP8;ID=intron:HG003_chrY_T0001706:1;Name=USP9YP8;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22510721	22510806	.	-	.	source_transcript=ENST00000441913.1;source_transcript_name=USP9YP8-201;source_gene=ENSG00000229416.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229416.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000441913.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441913.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP8;alternative_source_transcripts=ENST00000441913.1,ENST00000441913.1;transcript_id=HG003_chrY_T0001706;gene_id=HG003_chrY_G0000581;Parent=HG003_chrY_T0001706;transcript_name=HG003_chrY_T0001706;gene_name=USP9YP8;ID=exon:HG003_chrY_T0001706:2;Name=USP9YP8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22526262	22527912	.	+	.	source_gene_common_name=CDY11P;source_gene=ENSG00000230029.1;alternative_source_transcripts=ENST00000447168.1,ENST00000447168.1;gene_id=HG003_chrY_G0000582;gene_biotype=unprocessed_pseudogene;gene_name=CDY11P;gene_sources=liftoff;ID=HG003_chrY_G0000582;Name=CDY11P
HG003_chrY	CAT	transcript	22526262	22527912	1000	+	.	source_transcript=ENST00000447168.1;source_transcript_name=CDY11P-201;source_gene=ENSG00000230029.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230029.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447168.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY11P;alternative_source_transcripts=ENST00000447168.1,ENST00000447168.1;transcript_id=HG003_chrY_T0001707;gene_id=HG003_chrY_G0000582;Parent=HG003_chrY_G0000582;transcript_name=HG003_chrY_T0001707;gene_name=CDY11P;ID=HG003_chrY_T0001707;Name=CDY11P
HG003_chrY	CAT	exon	22526262	22527912	.	+	.	source_transcript=ENST00000447168.1;source_transcript_name=CDY11P-201;source_gene=ENSG00000230029.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230029.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447168.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447168.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY11P;alternative_source_transcripts=ENST00000447168.1,ENST00000447168.1;transcript_id=HG003_chrY_T0001707;gene_id=HG003_chrY_G0000582;Parent=HG003_chrY_T0001707;transcript_name=HG003_chrY_T0001707;gene_name=CDY11P;ID=exon:HG003_chrY_T0001707:0;Name=CDY11P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22607293	22607932	.	-	.	source_gene_common_name=OFD1P16Y;source_gene=ENSG00000277519.1;alternative_source_transcripts=ENST00000620993.1,ENST00000620993.1;gene_id=HG003_chrY_G0000583;gene_biotype=unprocessed_pseudogene;gene_name=OFD1P16Y;gene_sources=liftoff;ID=HG003_chrY_G0000583;Name=OFD1P16Y
HG003_chrY	CAT	transcript	22607293	22607932	1000	-	.	source_transcript=ENST00000620993.1;source_transcript_name=OFD1P16Y-201;source_gene=ENSG00000277519.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000277519.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000620993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000620993.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P16Y;alternative_source_transcripts=ENST00000620993.1,ENST00000620993.1;transcript_id=HG003_chrY_T0001708;gene_id=HG003_chrY_G0000583;Parent=HG003_chrY_G0000583;transcript_name=HG003_chrY_T0001708;gene_name=OFD1P16Y;ID=HG003_chrY_T0001708;Name=OFD1P16Y
HG003_chrY	CAT	exon	22607293	22607469	.	-	.	source_transcript=ENST00000620993.1;source_transcript_name=OFD1P16Y-201;source_gene=ENSG00000277519.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000277519.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000620993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000620993.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P16Y;alternative_source_transcripts=ENST00000620993.1,ENST00000620993.1;transcript_id=HG003_chrY_T0001708;gene_id=HG003_chrY_G0000583;Parent=HG003_chrY_T0001708;transcript_name=HG003_chrY_T0001708;gene_name=OFD1P16Y;ID=exon:HG003_chrY_T0001708:0;Name=OFD1P16Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22607470	22607791	.	-	.	source_transcript=ENST00000620993.1;source_transcript_name=OFD1P16Y-201;source_gene=ENSG00000277519.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000277519.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000620993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000620993.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P16Y;alternative_source_transcripts=ENST00000620993.1,ENST00000620993.1;transcript_id=HG003_chrY_T0001708;gene_id=HG003_chrY_G0000583;Parent=HG003_chrY_T0001708;transcript_name=HG003_chrY_T0001708;gene_name=OFD1P16Y;ID=intron:HG003_chrY_T0001708:0;Name=OFD1P16Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22607792	22607932	.	-	.	source_transcript=ENST00000620993.1;source_transcript_name=OFD1P16Y-201;source_gene=ENSG00000277519.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000277519.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000620993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000620993.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P16Y;alternative_source_transcripts=ENST00000620993.1,ENST00000620993.1;transcript_id=HG003_chrY_T0001708;gene_id=HG003_chrY_G0000583;Parent=HG003_chrY_T0001708;transcript_name=HG003_chrY_T0001708;gene_name=OFD1P16Y;ID=exon:HG003_chrY_T0001708:1;Name=OFD1P16Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22614972	22636433	.	+	.	source_gene_common_name=ENSG00000286187;source_gene=ENSG00000286187.2;alternative_source_transcripts=ENST00000807569.1,ENST00000807569.1;gene_id=HG003_chrY_G0000584;gene_biotype=lncRNA;gene_name=ENSG00000286187;gene_sources=liftoff;ID=HG003_chrY_G0000584;Name=ENSG00000286187
HG003_chrY	CAT	transcript	22614972	22628883	1000	+	.	source_transcript=ENST00000807569.1;source_transcript_name=ENST00000807569;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000807569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000807569.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000807569.1,ENST00000807569.1;transcript_id=HG003_chrY_T0001709;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_G0000584;transcript_name=HG003_chrY_T0001709;gene_name=ENSG00000286187;ID=HG003_chrY_T0001709;Name=ENSG00000286187
HG003_chrY	CAT	exon	22614972	22615290	.	+	.	source_transcript=ENST00000807569.1;source_transcript_name=ENST00000807569;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000807569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000807569.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000807569.1,ENST00000807569.1;transcript_id=HG003_chrY_T0001709;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001709;transcript_name=HG003_chrY_T0001709;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001709:0;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22615291	22628391	.	+	.	source_transcript=ENST00000807569.1;source_transcript_name=ENST00000807569;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000807569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000807569.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000807569.1,ENST00000807569.1;transcript_id=HG003_chrY_T0001709;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001709;transcript_name=HG003_chrY_T0001709;gene_name=ENSG00000286187;ID=intron:HG003_chrY_T0001709:0;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22628392	22628551	.	+	.	source_transcript=ENST00000807569.1;source_transcript_name=ENST00000807569;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000807569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000807569.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000807569.1,ENST00000807569.1;transcript_id=HG003_chrY_T0001709;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001709;transcript_name=HG003_chrY_T0001709;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001709:1;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22628552	22628711	.	+	.	source_transcript=ENST00000807569.1;source_transcript_name=ENST00000807569;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000807569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000807569.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000807569.1,ENST00000807569.1;transcript_id=HG003_chrY_T0001709;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001709;transcript_name=HG003_chrY_T0001709;gene_name=ENSG00000286187;ID=intron:HG003_chrY_T0001709:1;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22628712	22628883	.	+	.	source_transcript=ENST00000807569.1;source_transcript_name=ENST00000807569;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000807569.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000807569.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000807569.1,ENST00000807569.1;transcript_id=HG003_chrY_T0001709;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001709;transcript_name=HG003_chrY_T0001709;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001709:2;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22615003	22636433	1000	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_G0000584;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=HG003_chrY_T0001710;Name=ENSG00000286187
HG003_chrY	CAT	exon	22615003	22615290	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001710:0;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22615291	22626913	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=intron:HG003_chrY_T0001710:0;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22626914	22627219	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001710:1;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22627220	22628391	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=intron:HG003_chrY_T0001710:1;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22628392	22628551	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001710:2;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22628552	22628711	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=intron:HG003_chrY_T0001710:2;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22628712	22630877	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001710:3;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22630878	22631060	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=intron:HG003_chrY_T0001710:3;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22631061	22631222	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001710:4;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22631223	22631875	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=intron:HG003_chrY_T0001710:4;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22631876	22633240	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001710:5;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22633241	22633527	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=intron:HG003_chrY_T0001710:5;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22633528	22636433	.	+	.	source_transcript=ENST00000651708.2;source_transcript_name=ENST00000651708;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000651708.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000651708.2;transcript_score=299.986;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000651708.2,ENST00000651708.2;transcript_id=HG003_chrY_T0001710;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001710;transcript_name=HG003_chrY_T0001710;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001710:6;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22626767	22628877	1000	+	.	source_transcript=ENST00000807570.1;source_transcript_name=ENST00000807570;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000807570.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000807570.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000807570.1,ENST00000807570.1;transcript_id=HG003_chrY_T0001711;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_G0000584;transcript_name=HG003_chrY_T0001711;gene_name=ENSG00000286187;ID=HG003_chrY_T0001711;Name=ENSG00000286187
HG003_chrY	CAT	exon	22626767	22627219	.	+	.	source_transcript=ENST00000807570.1;source_transcript_name=ENST00000807570;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000807570.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000807570.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000807570.1,ENST00000807570.1;transcript_id=HG003_chrY_T0001711;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001711;transcript_name=HG003_chrY_T0001711;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001711:0;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22627220	22628391	.	+	.	source_transcript=ENST00000807570.1;source_transcript_name=ENST00000807570;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000807570.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000807570.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000807570.1,ENST00000807570.1;transcript_id=HG003_chrY_T0001711;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001711;transcript_name=HG003_chrY_T0001711;gene_name=ENSG00000286187;ID=intron:HG003_chrY_T0001711:0;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22628392	22628551	.	+	.	source_transcript=ENST00000807570.1;source_transcript_name=ENST00000807570;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000807570.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000807570.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000807570.1,ENST00000807570.1;transcript_id=HG003_chrY_T0001711;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001711;transcript_name=HG003_chrY_T0001711;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001711:1;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22628552	22628711	.	+	.	source_transcript=ENST00000807570.1;source_transcript_name=ENST00000807570;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000807570.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000807570.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000807570.1,ENST00000807570.1;transcript_id=HG003_chrY_T0001711;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001711;transcript_name=HG003_chrY_T0001711;gene_name=ENSG00000286187;ID=intron:HG003_chrY_T0001711:1;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22628712	22628877	.	+	.	source_transcript=ENST00000807570.1;source_transcript_name=ENST00000807570;source_gene=ENSG00000286187.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000286187.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000807570.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000807570.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286187;alternative_source_transcripts=ENST00000807570.1,ENST00000807570.1;transcript_id=HG003_chrY_T0001711;gene_id=HG003_chrY_G0000584;Parent=HG003_chrY_T0001711;transcript_name=HG003_chrY_T0001711;gene_name=ENSG00000286187;ID=exon:HG003_chrY_T0001711:2;Name=ENSG00000286187;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22661049	22663268	.	+	.	source_gene_common_name=ENSG00000229725;source_gene=ENSG00000229725.1;alternative_source_transcripts=ENST00000414540.1,ENST00000414540.1;gene_id=HG003_chrY_G0000585;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000229725;gene_sources=liftoff;ID=HG003_chrY_G0000585;Name=ENSG00000229725
HG003_chrY	CAT	transcript	22661049	22663268	1000	+	.	source_transcript=ENST00000414540.1;source_transcript_name=ENST00000414540;source_gene=ENSG00000229725.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229725.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414540.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414540.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229725;alternative_source_transcripts=ENST00000414540.1,ENST00000414540.1;transcript_id=HG003_chrY_T0001712;gene_id=HG003_chrY_G0000585;Parent=HG003_chrY_G0000585;transcript_name=HG003_chrY_T0001712;gene_name=ENSG00000229725;ID=HG003_chrY_T0001712;Name=ENSG00000229725
HG003_chrY	CAT	exon	22661049	22661435	.	+	.	source_transcript=ENST00000414540.1;source_transcript_name=ENST00000414540;source_gene=ENSG00000229725.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229725.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414540.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414540.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229725;alternative_source_transcripts=ENST00000414540.1,ENST00000414540.1;transcript_id=HG003_chrY_T0001712;gene_id=HG003_chrY_G0000585;Parent=HG003_chrY_T0001712;transcript_name=HG003_chrY_T0001712;gene_name=ENSG00000229725;ID=exon:HG003_chrY_T0001712:0;Name=ENSG00000229725;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22661436	22662679	.	+	.	source_transcript=ENST00000414540.1;source_transcript_name=ENST00000414540;source_gene=ENSG00000229725.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229725.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414540.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414540.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229725;alternative_source_transcripts=ENST00000414540.1,ENST00000414540.1;transcript_id=HG003_chrY_T0001712;gene_id=HG003_chrY_G0000585;Parent=HG003_chrY_T0001712;transcript_name=HG003_chrY_T0001712;gene_name=ENSG00000229725;ID=intron:HG003_chrY_T0001712:0;Name=ENSG00000229725;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22662680	22662847	.	+	.	source_transcript=ENST00000414540.1;source_transcript_name=ENST00000414540;source_gene=ENSG00000229725.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229725.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414540.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414540.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229725;alternative_source_transcripts=ENST00000414540.1,ENST00000414540.1;transcript_id=HG003_chrY_T0001712;gene_id=HG003_chrY_G0000585;Parent=HG003_chrY_T0001712;transcript_name=HG003_chrY_T0001712;gene_name=ENSG00000229725;ID=exon:HG003_chrY_T0001712:1;Name=ENSG00000229725;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22662848	22663218	.	+	.	source_transcript=ENST00000414540.1;source_transcript_name=ENST00000414540;source_gene=ENSG00000229725.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229725.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414540.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414540.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229725;alternative_source_transcripts=ENST00000414540.1,ENST00000414540.1;transcript_id=HG003_chrY_T0001712;gene_id=HG003_chrY_G0000585;Parent=HG003_chrY_T0001712;transcript_name=HG003_chrY_T0001712;gene_name=ENSG00000229725;ID=intron:HG003_chrY_T0001712:1;Name=ENSG00000229725;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22663219	22663268	.	+	.	source_transcript=ENST00000414540.1;source_transcript_name=ENST00000414540;source_gene=ENSG00000229725.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229725.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414540.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414540.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000229725;alternative_source_transcripts=ENST00000414540.1,ENST00000414540.1;transcript_id=HG003_chrY_T0001712;gene_id=HG003_chrY_G0000585;Parent=HG003_chrY_T0001712;transcript_name=HG003_chrY_T0001712;gene_name=ENSG00000229725;ID=exon:HG003_chrY_T0001712:2;Name=ENSG00000229725;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22669795	22684243	.	-	.	source_gene_common_name=RBMY1A1;source_gene=ENSG00000234414.8;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;gene_id=HG003_chrY_G0000586;gene_biotype=protein_coding;gene_name=RBMY1A1;gene_sources=liftoff;ID=HG003_chrY_G0000586;Name=RBMY1A1
HG003_chrY	CAT	transcript	22669795	22684243	100	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_G0000586;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=HG003_chrY_T0001713;Name=RBMY1A1
HG003_chrY	CAT	exon	22669795	22670371	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001713:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670073	22670371	.	-	2	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001713:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22670073	22670075	.	-	0	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=stop_codon:HG003_chrY_T0001713;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22670372	22670782	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001713:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22670783	22670871	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001713:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670783	22670871	.	-	1	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001713:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22670872	22670958	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001713:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22670959	22671069	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001713:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22670959	22671069	.	-	1	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001713:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22671070	22671990	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001713:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22671991	22672101	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001713:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22671991	22672101	.	-	1	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001713:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22672102	22672535	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001713:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22672536	22672646	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001713:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22672536	22672646	.	-	1	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001713:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22672647	22673087	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001713:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22673088	22673198	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001713:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22673088	22673198	.	-	1	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001713:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22673199	22674153	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001713:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22674154	22674268	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001713:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22674154	22674268	.	-	2	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001713:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22674269	22676278	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001713:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22676279	22676431	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001713:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22676279	22676431	.	-	2	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001713:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22676432	22678346	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001713:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22678347	22678524	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001713:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22678347	22678524	.	-	0	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001713:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22678525	22681543	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001713:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22681544	22681647	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001713:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22681544	22681647	.	-	2	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001713:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22681648	22682121	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001713:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22682122	22682234	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001713:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22682122	22682230	.	-	0	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001713:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22682228	22682230	.	-	0	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=start_codon:HG003_chrY_T0001713;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22682235	22684095	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001713:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22684096	22684243	.	-	.	source_transcript=ENST00000382707.6;source_transcript_name=RBMY1A1-202;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382707.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382707.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382680.5,ENST00000382680.5;transcript_id=HG003_chrY_T0001713;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001713;transcript_name=HG003_chrY_T0001713;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001713:11;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22669795	22684218	1000	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_G0000586;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=HG003_chrY_T0001714;Name=RBMY1A1
HG003_chrY	CAT	exon	22669795	22670371	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001714:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22670372	22670782	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001714:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22670783	22670871	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001714:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22670872	22670958	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001714:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22670959	22671069	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001714:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22671070	22671990	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001714:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22671991	22672101	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001714:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22672102	22672535	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001714:3;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22672536	22672646	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001714:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22672647	22673087	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001714:4;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22673088	22673198	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001714:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22673199	22674153	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001714:5;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22674154	22674268	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001714:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22674269	22676278	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001714:6;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22676279	22676431	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001714:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22676399	22676431	.	-	0	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001714:0;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22676399	22676401	.	-	0	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=stop_codon:HG003_chrY_T0001714;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22676432	22681543	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001714:7;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22681544	22681647	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001714:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22681544	22681647	.	-	2	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001714:1;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22681648	22682121	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001714:8;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22682122	22682234	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001714:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22682122	22682230	.	-	0	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=CDS:HG003_chrY_T0001714:2;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22682228	22682230	.	-	0	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=start_codon:HG003_chrY_T0001714;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22682235	22684095	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=intron:HG003_chrY_T0001714:9;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22684096	22684218	.	-	.	source_transcript=ENST00000361046.4;source_transcript_name=RBMY1A1-201;source_gene=ENSG00000234414.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000234414.8;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000361046.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000361046.4;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1A1;alternative_source_transcripts=ENST00000382653.6,ENST00000382653.6;transcript_id=HG003_chrY_T0001714;gene_id=HG003_chrY_G0000586;Parent=HG003_chrY_T0001714;transcript_name=HG003_chrY_T0001714;gene_name=RBMY1A1;ID=exon:HG003_chrY_T0001714:10;Name=RBMY1A1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22685111	22687276	.	+	.	source_gene_common_name=ENSG00000251618;source_gene=ENSG00000251618.1;alternative_source_transcripts=ENST00000509611.1,ENST00000509611.1;gene_id=HG003_chrY_G0000587;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000251618;gene_sources=liftoff;ID=HG003_chrY_G0000587;Name=ENSG00000251618
HG003_chrY	CAT	transcript	22685111	22687276	1000	+	.	source_transcript=ENST00000509611.1;source_transcript_name=ENST00000509611;source_gene=ENSG00000251618.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000251618.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509611.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509611.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000251618;alternative_source_transcripts=ENST00000509611.1,ENST00000509611.1;transcript_id=HG003_chrY_T0001715;gene_id=HG003_chrY_G0000587;Parent=HG003_chrY_G0000587;transcript_name=HG003_chrY_T0001715;gene_name=ENSG00000251618;ID=HG003_chrY_T0001715;Name=ENSG00000251618
HG003_chrY	CAT	exon	22685111	22685495	.	+	.	source_transcript=ENST00000509611.1;source_transcript_name=ENST00000509611;source_gene=ENSG00000251618.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000251618.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509611.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509611.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000251618;alternative_source_transcripts=ENST00000509611.1,ENST00000509611.1;transcript_id=HG003_chrY_T0001715;gene_id=HG003_chrY_G0000587;Parent=HG003_chrY_T0001715;transcript_name=HG003_chrY_T0001715;gene_name=ENSG00000251618;ID=exon:HG003_chrY_T0001715:0;Name=ENSG00000251618;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22685496	22686492	.	+	.	source_transcript=ENST00000509611.1;source_transcript_name=ENST00000509611;source_gene=ENSG00000251618.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000251618.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509611.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509611.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000251618;alternative_source_transcripts=ENST00000509611.1,ENST00000509611.1;transcript_id=HG003_chrY_T0001715;gene_id=HG003_chrY_G0000587;Parent=HG003_chrY_T0001715;transcript_name=HG003_chrY_T0001715;gene_name=ENSG00000251618;ID=intron:HG003_chrY_T0001715:0;Name=ENSG00000251618;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22686493	22686577	.	+	.	source_transcript=ENST00000509611.1;source_transcript_name=ENST00000509611;source_gene=ENSG00000251618.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000251618.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509611.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509611.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000251618;alternative_source_transcripts=ENST00000509611.1,ENST00000509611.1;transcript_id=HG003_chrY_T0001715;gene_id=HG003_chrY_G0000587;Parent=HG003_chrY_T0001715;transcript_name=HG003_chrY_T0001715;gene_name=ENSG00000251618;ID=exon:HG003_chrY_T0001715:1;Name=ENSG00000251618;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22686578	22686821	.	+	.	source_transcript=ENST00000509611.1;source_transcript_name=ENST00000509611;source_gene=ENSG00000251618.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000251618.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509611.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509611.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000251618;alternative_source_transcripts=ENST00000509611.1,ENST00000509611.1;transcript_id=HG003_chrY_T0001715;gene_id=HG003_chrY_G0000587;Parent=HG003_chrY_T0001715;transcript_name=HG003_chrY_T0001715;gene_name=ENSG00000251618;ID=intron:HG003_chrY_T0001715:1;Name=ENSG00000251618;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22686822	22686900	.	+	.	source_transcript=ENST00000509611.1;source_transcript_name=ENST00000509611;source_gene=ENSG00000251618.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000251618.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509611.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509611.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000251618;alternative_source_transcripts=ENST00000509611.1,ENST00000509611.1;transcript_id=HG003_chrY_T0001715;gene_id=HG003_chrY_G0000587;Parent=HG003_chrY_T0001715;transcript_name=HG003_chrY_T0001715;gene_name=ENSG00000251618;ID=exon:HG003_chrY_T0001715:2;Name=ENSG00000251618;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22686901	22686985	.	+	.	source_transcript=ENST00000509611.1;source_transcript_name=ENST00000509611;source_gene=ENSG00000251618.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000251618.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509611.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509611.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000251618;alternative_source_transcripts=ENST00000509611.1,ENST00000509611.1;transcript_id=HG003_chrY_T0001715;gene_id=HG003_chrY_G0000587;Parent=HG003_chrY_T0001715;transcript_name=HG003_chrY_T0001715;gene_name=ENSG00000251618;ID=intron:HG003_chrY_T0001715:2;Name=ENSG00000251618;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22686986	22687117	.	+	.	source_transcript=ENST00000509611.1;source_transcript_name=ENST00000509611;source_gene=ENSG00000251618.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000251618.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509611.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509611.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000251618;alternative_source_transcripts=ENST00000509611.1,ENST00000509611.1;transcript_id=HG003_chrY_T0001715;gene_id=HG003_chrY_G0000587;Parent=HG003_chrY_T0001715;transcript_name=HG003_chrY_T0001715;gene_name=ENSG00000251618;ID=exon:HG003_chrY_T0001715:3;Name=ENSG00000251618;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22687118	22687234	.	+	.	source_transcript=ENST00000509611.1;source_transcript_name=ENST00000509611;source_gene=ENSG00000251618.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000251618.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509611.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509611.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000251618;alternative_source_transcripts=ENST00000509611.1,ENST00000509611.1;transcript_id=HG003_chrY_T0001715;gene_id=HG003_chrY_G0000587;Parent=HG003_chrY_T0001715;transcript_name=HG003_chrY_T0001715;gene_name=ENSG00000251618;ID=intron:HG003_chrY_T0001715:3;Name=ENSG00000251618;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22687235	22687276	.	+	.	source_transcript=ENST00000509611.1;source_transcript_name=ENST00000509611;source_gene=ENSG00000251618.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000251618.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000509611.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000509611.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000251618;alternative_source_transcripts=ENST00000509611.1,ENST00000509611.1;transcript_id=HG003_chrY_T0001715;gene_id=HG003_chrY_G0000587;Parent=HG003_chrY_T0001715;transcript_name=HG003_chrY_T0001715;gene_name=ENSG00000251618;ID=exon:HG003_chrY_T0001715:4;Name=ENSG00000251618;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22693335	22707747	.	-	.	source_gene_common_name=RBMY1E;source_gene=ENSG00000242389.9;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;gene_id=HG003_chrY_G0000588;gene_biotype=protein_coding;gene_name=RBMY1E;gene_sources=liftoff;ID=HG003_chrY_G0000588;Name=RBMY1E
HG003_chrY	CAT	transcript	22693335	22707747	1000	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_G0000588;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=HG003_chrY_T0001716;Name=RBMY1E
HG003_chrY	CAT	exon	22693335	22693911	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001716:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22693912	22694322	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001716:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694323	22694411	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001716:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694412	22694497	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001716:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694498	22694608	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001716:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694609	22695529	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001716:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22695530	22695640	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001716:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22695641	22696074	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001716:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696075	22696185	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001716:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696186	22696626	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001716:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696627	22696737	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001716:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696738	22697692	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001716:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22697693	22697807	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001716:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22697808	22699817	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001716:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22699818	22699970	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001716:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22699938	22699970	.	-	0	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001716:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22699938	22699940	.	-	0	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=stop_codon:HG003_chrY_T0001716;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22699971	22705082	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001716:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705083	22705186	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001716:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705083	22705186	.	-	2	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001716:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705187	22705650	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001716:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705651	22705763	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001716:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705651	22705759	.	-	0	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001716:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22705757	22705759	.	-	0	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=start_codon:HG003_chrY_T0001716;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705764	22707624	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001716:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22707625	22707747	.	-	.	source_transcript=ENST00000358944.8;source_transcript_name=RBMY1E-201;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000358944.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000358944.8;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000358944.8,ENST00000358944.8;transcript_id=HG003_chrY_T0001716;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001716;transcript_name=HG003_chrY_T0001716;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001716:10;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22693337	22707737	100	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_G0000588;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=HG003_chrY_T0001717;Name=RBMY1E
HG003_chrY	CAT	exon	22693337	22693911	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001717:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22693613	22693911	.	-	2	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001717:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22693613	22693615	.	-	0	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=stop_codon:HG003_chrY_T0001717;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22693912	22694322	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001717:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694323	22694411	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001717:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22694323	22694411	.	-	1	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001717:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694412	22695529	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001717:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22695530	22695640	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001717:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22695530	22695640	.	-	1	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001717:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22695641	22696074	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001717:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696075	22696185	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001717:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696075	22696185	.	-	1	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001717:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696186	22696626	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001717:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696627	22696737	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001717:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696627	22696737	.	-	1	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001717:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696738	22697692	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001717:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22697693	22697807	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001717:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22697693	22697807	.	-	2	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001717:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22697808	22699817	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001717:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22699818	22699970	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001717:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22699818	22699970	.	-	2	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001717:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22699971	22701885	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001717:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22701886	22702063	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001717:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22701886	22702063	.	-	0	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001717:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22702064	22705082	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001717:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705083	22705186	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001717:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705083	22705186	.	-	2	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001717:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705187	22705650	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001717:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705651	22705763	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001717:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705651	22705759	.	-	0	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001717:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22705757	22705759	.	-	0	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=start_codon:HG003_chrY_T0001717;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705764	22707624	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001717:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22707625	22707737	.	-	.	source_transcript=ENST00000382658.5;source_transcript_name=RBMY1E-202;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382658.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382658.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382658.5,ENST00000382658.5;transcript_id=HG003_chrY_T0001717;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001717;transcript_name=HG003_chrY_T0001717;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001717:10;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22693339	22707737	100	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_G0000588;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=HG003_chrY_T0001718;Name=RBMY1E
HG003_chrY	CAT	exon	22693339	22693911	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001718:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22693613	22693911	.	-	2	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001718:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22693613	22693615	.	-	0	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=stop_codon:HG003_chrY_T0001718;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22693912	22694322	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001718:0;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694323	22694411	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001718:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22694323	22694411	.	-	1	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001718:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694412	22694497	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001718:1;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22694498	22694608	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001718:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22694498	22694608	.	-	1	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001718:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22694609	22695529	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001718:2;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22695530	22695640	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001718:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22695530	22695640	.	-	1	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001718:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22695641	22696074	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001718:3;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696075	22696185	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001718:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696075	22696185	.	-	1	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001718:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696186	22696626	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001718:4;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22696627	22696737	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001718:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22696627	22696737	.	-	1	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001718:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22696738	22697692	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001718:5;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22697693	22697807	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001718:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22697693	22697807	.	-	2	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001718:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22697808	22699817	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001718:6;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22699818	22699970	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001718:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22699818	22699970	.	-	2	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001718:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22699971	22701885	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001718:7;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22701886	22702063	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001718:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22701886	22702063	.	-	0	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001718:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22702064	22705082	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001718:8;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705083	22705186	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001718:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705083	22705186	.	-	2	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001718:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705187	22705650	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001718:9;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22705651	22705763	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001718:10;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22705651	22705759	.	-	0	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=CDS:HG003_chrY_T0001718:10;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22705757	22705759	.	-	0	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=start_codon:HG003_chrY_T0001718;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22705764	22707624	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=intron:HG003_chrY_T0001718:10;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22707625	22707737	.	-	.	source_transcript=ENST00000382659.7;source_transcript_name=RBMY1E-203;source_gene=ENSG00000242389.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000242389.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382659.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382659.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1E;alternative_source_transcripts=ENST00000382659.7,ENST00000382659.7;transcript_id=HG003_chrY_T0001718;gene_id=HG003_chrY_G0000588;Parent=HG003_chrY_T0001718;transcript_name=HG003_chrY_T0001718;gene_name=RBMY1E;ID=exon:HG003_chrY_T0001718:11;Name=RBMY1E;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22708640	22710811	.	+	.	source_gene_common_name=ENSG00000227444;source_gene=ENSG00000227444.1;alternative_source_transcripts=ENST00000426983.1;gene_id=HG003_chrY_G0000589;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000227444;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000589;Name=ENSG00000227444
HG003_chrY	CAT	transcript	22708640	22710811	1000	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=transMap;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;alternative_source_transcripts=ENST00000426983.1;transcript_id=HG003_chrY_T0001719;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_G0000589;transcript_name=HG003_chrY_T0001719;gene_name=ENSG00000227444;ID=HG003_chrY_T0001719;Name=ENSG00000227444
HG003_chrY	CAT	exon	22708640	22709033	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=transMap;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;alternative_source_transcripts=ENST00000426983.1;transcript_id=HG003_chrY_T0001719;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001719;transcript_name=HG003_chrY_T0001719;gene_name=ENSG00000227444;ID=exon:HG003_chrY_T0001719:0;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22709034	22710021	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=transMap;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;alternative_source_transcripts=ENST00000426983.1;transcript_id=HG003_chrY_T0001719;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001719;transcript_name=HG003_chrY_T0001719;gene_name=ENSG00000227444;ID=intron:HG003_chrY_T0001719:0;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22710022	22710106	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=transMap;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;alternative_source_transcripts=ENST00000426983.1;transcript_id=HG003_chrY_T0001719;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001719;transcript_name=HG003_chrY_T0001719;gene_name=ENSG00000227444;ID=exon:HG003_chrY_T0001719:1;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22710107	22710350	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=transMap;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;alternative_source_transcripts=ENST00000426983.1;transcript_id=HG003_chrY_T0001719;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001719;transcript_name=HG003_chrY_T0001719;gene_name=ENSG00000227444;ID=intron:HG003_chrY_T0001719:1;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22710351	22710646	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=transMap;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;alternative_source_transcripts=ENST00000426983.1;transcript_id=HG003_chrY_T0001719;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001719;transcript_name=HG003_chrY_T0001719;gene_name=ENSG00000227444;ID=exon:HG003_chrY_T0001719:2;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22710647	22710763	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=transMap;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;alternative_source_transcripts=ENST00000426983.1;transcript_id=HG003_chrY_T0001719;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001719;transcript_name=HG003_chrY_T0001719;gene_name=ENSG00000227444;ID=intron:HG003_chrY_T0001719:2;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22710764	22710811	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=transMap;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;alternative_source_transcripts=ENST00000426983.1;transcript_id=HG003_chrY_T0001719;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001719;transcript_name=HG003_chrY_T0001719;gene_name=ENSG00000227444;ID=exon:HG003_chrY_T0001719:3;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22708640	22710811	1000	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;transcript_id=HG003_chrY_T0001720;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_G0000589;transcript_name=HG003_chrY_T0001720;gene_name=ENSG00000227444;ID=HG003_chrY_T0001720;Name=ENSG00000227444
HG003_chrY	CAT	exon	22708640	22709033	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;transcript_id=HG003_chrY_T0001720;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001720;transcript_name=HG003_chrY_T0001720;gene_name=ENSG00000227444;ID=exon:HG003_chrY_T0001720:0;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22709034	22710021	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;transcript_id=HG003_chrY_T0001720;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001720;transcript_name=HG003_chrY_T0001720;gene_name=ENSG00000227444;ID=intron:HG003_chrY_T0001720:0;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22710022	22710106	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;transcript_id=HG003_chrY_T0001720;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001720;transcript_name=HG003_chrY_T0001720;gene_name=ENSG00000227444;ID=exon:HG003_chrY_T0001720:1;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22710107	22710350	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;transcript_id=HG003_chrY_T0001720;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001720;transcript_name=HG003_chrY_T0001720;gene_name=ENSG00000227444;ID=intron:HG003_chrY_T0001720:1;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22710351	22710429	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;transcript_id=HG003_chrY_T0001720;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001720;transcript_name=HG003_chrY_T0001720;gene_name=ENSG00000227444;ID=exon:HG003_chrY_T0001720:2;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22710430	22710502	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;transcript_id=HG003_chrY_T0001720;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001720;transcript_name=HG003_chrY_T0001720;gene_name=ENSG00000227444;ID=intron:HG003_chrY_T0001720:2;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22710503	22710646	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;transcript_id=HG003_chrY_T0001720;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001720;transcript_name=HG003_chrY_T0001720;gene_name=ENSG00000227444;ID=exon:HG003_chrY_T0001720:3;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22710647	22710763	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;transcript_id=HG003_chrY_T0001720;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001720;transcript_name=HG003_chrY_T0001720;gene_name=ENSG00000227444;ID=intron:HG003_chrY_T0001720:3;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22710764	22710811	.	+	.	source_transcript=ENST00000426983.1;source_transcript_name=ENST00000426983;source_gene=ENSG00000227444.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227444.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426983.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426983.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000227444;transcript_id=HG003_chrY_T0001720;gene_id=HG003_chrY_G0000589;Parent=HG003_chrY_T0001720;transcript_name=HG003_chrY_T0001720;gene_name=ENSG00000227444;ID=exon:HG003_chrY_T0001720:4;Name=ENSG00000227444;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22717226	22726860	.	-	.	source_gene_common_name=RBMY2AP;source_gene=ENSG00000226092.4;gene_id=HG003_chrY_G0000590;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RBMY2AP;gene_sources=liftoff;ID=HG003_chrY_G0000590;Name=RBMY2AP
HG003_chrY	CAT	transcript	22717226	22726860	1000	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_G0000590;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=HG003_chrY_T0001721;Name=RBMY2AP
HG003_chrY	CAT	exon	22717226	22717524	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=exon:HG003_chrY_T0001721:0;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22717525	22717948	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=intron:HG003_chrY_T0001721:0;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22717949	22718036	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=exon:HG003_chrY_T0001721:1;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22718037	22718118	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=intron:HG003_chrY_T0001721:1;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22718119	22718229	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=exon:HG003_chrY_T0001721:2;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22718230	22719098	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=intron:HG003_chrY_T0001721:2;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22719099	22719213	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=exon:HG003_chrY_T0001721:3;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22719214	22721220	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=intron:HG003_chrY_T0001721:3;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22721221	22721373	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=exon:HG003_chrY_T0001721:4;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22721374	22723308	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=intron:HG003_chrY_T0001721:4;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22723309	22723486	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=exon:HG003_chrY_T0001721:5;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22723487	22726194	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=intron:HG003_chrY_T0001721:5;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22726195	22726298	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=exon:HG003_chrY_T0001721:6;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22726299	22726751	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=intron:HG003_chrY_T0001721:6;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22726752	22726860	.	-	.	source_transcript=ENST00000445405.1;source_transcript_name=RBMY2AP-201;source_gene=ENSG00000226092.4;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000226092.4;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445405.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2AP;transcript_id=HG003_chrY_T0001721;gene_id=HG003_chrY_G0000590;Parent=HG003_chrY_T0001721;transcript_name=HG003_chrY_T0001721;gene_name=RBMY2AP;ID=exon:HG003_chrY_T0001721:7;Name=RBMY2AP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22719016	22728862	.	-	.	source_gene_common_name=ENSG00000295847;source_gene=ENSG00000295847.1;gene_id=HG003_chrY_G0000591;gene_biotype=lncRNA;gene_name=ENSG00000295847;gene_sources=liftoff;ID=HG003_chrY_G0000591;Name=ENSG00000295847
HG003_chrY	CAT	transcript	22719016	22728862	1000	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_G0000591;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=HG003_chrY_T0001722;Name=ENSG00000295847
HG003_chrY	CAT	exon	22719016	22719213	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001722:0;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22719214	22721220	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=intron:HG003_chrY_T0001722:0;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22721221	22721373	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001722:1;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22721374	22723308	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=intron:HG003_chrY_T0001722:1;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22723309	22723486	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001722:2;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22723487	22726194	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=intron:HG003_chrY_T0001722:2;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22726195	22726298	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001722:3;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22726299	22726751	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=intron:HG003_chrY_T0001722:3;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22726752	22726864	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001722:4;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22726865	22727878	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=intron:HG003_chrY_T0001722:4;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22727879	22727958	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001722:5;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22727959	22728712	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=intron:HG003_chrY_T0001722:5;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22728713	22728862	.	-	.	source_transcript=ENST00000733072.1;source_transcript_name=ENST00000733072;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733072.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733072.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001722;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001722;transcript_name=HG003_chrY_T0001722;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001722:6;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22720385	22728831	1000	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_G0000591;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=HG003_chrY_T0001723;Name=ENSG00000295847
HG003_chrY	CAT	exon	22720385	22720642	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001723:0;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22720643	22721220	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=intron:HG003_chrY_T0001723:0;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22721221	22721373	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001723:1;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22721374	22723308	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=intron:HG003_chrY_T0001723:1;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22723309	22723486	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001723:2;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22723487	22726194	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=intron:HG003_chrY_T0001723:2;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22726195	22726298	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001723:3;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22726299	22726751	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=intron:HG003_chrY_T0001723:3;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22726752	22726864	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001723:4;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22726865	22727878	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=intron:HG003_chrY_T0001723:4;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22727879	22727958	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001723:5;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22727959	22728712	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=intron:HG003_chrY_T0001723:5;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22728713	22728831	.	-	.	source_transcript=ENST00000733073.1;source_transcript_name=ENST00000733073;source_gene=ENSG00000295847.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295847.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000733073.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000733073.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295847;transcript_id=HG003_chrY_T0001723;gene_id=HG003_chrY_G0000591;Parent=HG003_chrY_T0001723;transcript_name=HG003_chrY_T0001723;gene_name=ENSG00000295847;ID=exon:HG003_chrY_T0001723:6;Name=ENSG00000295847;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22729722	22731303	.	+	.	source_gene_common_name=ENSG00000237968;source_gene=ENSG00000237968.1;alternative_source_transcripts=ENST00000426526.1;gene_id=HG003_chrY_G0000592;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000237968;gene_sources=liftoff;ID=HG003_chrY_G0000592;Name=ENSG00000237968
HG003_chrY	CAT	transcript	22729722	22731303	1000	+	.	source_transcript=ENST00000426526.1;source_transcript_name=ENST00000426526;source_gene=ENSG00000237968.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237968.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426526.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426526.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000237968;alternative_source_transcripts=ENST00000426526.1;transcript_id=HG003_chrY_T0001724;gene_id=HG003_chrY_G0000592;Parent=HG003_chrY_G0000592;transcript_name=HG003_chrY_T0001724;gene_name=ENSG00000237968;ID=HG003_chrY_T0001724;Name=ENSG00000237968
HG003_chrY	CAT	exon	22729722	22730053	.	+	.	source_transcript=ENST00000426526.1;source_transcript_name=ENST00000426526;source_gene=ENSG00000237968.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237968.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426526.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426526.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000237968;alternative_source_transcripts=ENST00000426526.1;transcript_id=HG003_chrY_T0001724;gene_id=HG003_chrY_G0000592;Parent=HG003_chrY_T0001724;transcript_name=HG003_chrY_T0001724;gene_name=ENSG00000237968;ID=exon:HG003_chrY_T0001724:0;Name=ENSG00000237968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22730054	22730532	.	+	.	source_transcript=ENST00000426526.1;source_transcript_name=ENST00000426526;source_gene=ENSG00000237968.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237968.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426526.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426526.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000237968;alternative_source_transcripts=ENST00000426526.1;transcript_id=HG003_chrY_T0001724;gene_id=HG003_chrY_G0000592;Parent=HG003_chrY_T0001724;transcript_name=HG003_chrY_T0001724;gene_name=ENSG00000237968;ID=intron:HG003_chrY_T0001724:0;Name=ENSG00000237968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22730533	22730571	.	+	.	source_transcript=ENST00000426526.1;source_transcript_name=ENST00000426526;source_gene=ENSG00000237968.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237968.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426526.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426526.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000237968;alternative_source_transcripts=ENST00000426526.1;transcript_id=HG003_chrY_T0001724;gene_id=HG003_chrY_G0000592;Parent=HG003_chrY_T0001724;transcript_name=HG003_chrY_T0001724;gene_name=ENSG00000237968;ID=exon:HG003_chrY_T0001724:1;Name=ENSG00000237968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22730572	22730769	.	+	.	source_transcript=ENST00000426526.1;source_transcript_name=ENST00000426526;source_gene=ENSG00000237968.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237968.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426526.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426526.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000237968;alternative_source_transcripts=ENST00000426526.1;transcript_id=HG003_chrY_T0001724;gene_id=HG003_chrY_G0000592;Parent=HG003_chrY_T0001724;transcript_name=HG003_chrY_T0001724;gene_name=ENSG00000237968;ID=intron:HG003_chrY_T0001724:1;Name=ENSG00000237968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22730770	22730879	.	+	.	source_transcript=ENST00000426526.1;source_transcript_name=ENST00000426526;source_gene=ENSG00000237968.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237968.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426526.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426526.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000237968;alternative_source_transcripts=ENST00000426526.1;transcript_id=HG003_chrY_T0001724;gene_id=HG003_chrY_G0000592;Parent=HG003_chrY_T0001724;transcript_name=HG003_chrY_T0001724;gene_name=ENSG00000237968;ID=exon:HG003_chrY_T0001724:2;Name=ENSG00000237968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22730880	22730966	.	+	.	source_transcript=ENST00000426526.1;source_transcript_name=ENST00000426526;source_gene=ENSG00000237968.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237968.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426526.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426526.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000237968;alternative_source_transcripts=ENST00000426526.1;transcript_id=HG003_chrY_T0001724;gene_id=HG003_chrY_G0000592;Parent=HG003_chrY_T0001724;transcript_name=HG003_chrY_T0001724;gene_name=ENSG00000237968;ID=intron:HG003_chrY_T0001724:2;Name=ENSG00000237968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22730967	22731110	.	+	.	source_transcript=ENST00000426526.1;source_transcript_name=ENST00000426526;source_gene=ENSG00000237968.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237968.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426526.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426526.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000237968;alternative_source_transcripts=ENST00000426526.1;transcript_id=HG003_chrY_T0001724;gene_id=HG003_chrY_G0000592;Parent=HG003_chrY_T0001724;transcript_name=HG003_chrY_T0001724;gene_name=ENSG00000237968;ID=exon:HG003_chrY_T0001724:3;Name=ENSG00000237968;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22731111	22731227	.	+	.	source_transcript=ENST00000426526.1;source_transcript_name=ENST00000426526;source_gene=ENSG00000237968.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237968.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426526.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426526.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000237968;alternative_source_transcripts=ENST00000426526.1;transcript_id=HG003_chrY_T0001724;gene_id=HG003_chrY_G0000592;Parent=HG003_chrY_T0001724;transcript_name=HG003_chrY_T0001724;gene_name=ENSG00000237968;ID=intron:HG003_chrY_T0001724:3;Name=ENSG00000237968;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22731228	22731303	.	+	.	source_transcript=ENST00000426526.1;source_transcript_name=ENST00000426526;source_gene=ENSG00000237968.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237968.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426526.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426526.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000237968;alternative_source_transcripts=ENST00000426526.1;transcript_id=HG003_chrY_T0001724;gene_id=HG003_chrY_G0000592;Parent=HG003_chrY_T0001724;transcript_name=HG003_chrY_T0001724;gene_name=ENSG00000237968;ID=exon:HG003_chrY_T0001724:4;Name=ENSG00000237968;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22735077	22740532	.	-	.	source_gene_common_name=ENSG00000299625;source_gene=ENSG00000299625.1_2;gene_id=HG003_chrY_G0000593;gene_biotype=lncRNA;gene_name=ENSG00000299625;gene_sources=liftoff;ID=HG003_chrY_G0000593;Name=ENSG00000299625
HG003_chrY	CAT	transcript	22735077	22740531	1000	-	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001725;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_G0000593;transcript_name=HG003_chrY_T0001725;gene_name=ENSG00000299625;ID=HG003_chrY_T0001725;Name=ENSG00000299625
HG003_chrY	CAT	exon	22735077	22735782	.	-	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001725;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_T0001725;transcript_name=HG003_chrY_T0001725;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001725:0;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22735783	22736146	.	-	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001725;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_T0001725;transcript_name=HG003_chrY_T0001725;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0001725:0;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22736147	22736273	.	-	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001725;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_T0001725;transcript_name=HG003_chrY_T0001725;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001725:1;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22736274	22738142	.	-	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001725;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_T0001725;transcript_name=HG003_chrY_T0001725;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0001725:1;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22738143	22738276	.	-	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001725;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_T0001725;transcript_name=HG003_chrY_T0001725;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001725:2;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22738277	22740192	.	-	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001725;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_T0001725;transcript_name=HG003_chrY_T0001725;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0001725:2;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22740193	22740531	.	-	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001725;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_T0001725;transcript_name=HG003_chrY_T0001725;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001725:3;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22735083	22740532	1000	-	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001726;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_G0000593;transcript_name=HG003_chrY_T0001726;gene_name=ENSG00000299625;ID=HG003_chrY_T0001726;Name=ENSG00000299625
HG003_chrY	CAT	exon	22735083	22735782	.	-	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001726;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_T0001726;transcript_name=HG003_chrY_T0001726;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001726:0;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22735783	22736146	.	-	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001726;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_T0001726;transcript_name=HG003_chrY_T0001726;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0001726:0;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22736147	22736273	.	-	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001726;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_T0001726;transcript_name=HG003_chrY_T0001726;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001726:1;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22736274	22740192	.	-	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001726;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_T0001726;transcript_name=HG003_chrY_T0001726;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0001726:1;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22740193	22740532	.	-	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1_2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1_2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001726;gene_id=HG003_chrY_G0000593;Parent=HG003_chrY_T0001726;transcript_name=HG003_chrY_T0001726;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001726:2;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22762027	22795061	.	+	.	source_gene_common_name=OFD1P8Y;source_gene=ENSG00000231159.1;alternative_source_transcripts=ENST00000449148.1;gene_id=HG003_chrY_G0000594;gene_biotype=unprocessed_pseudogene;gene_name=OFD1P8Y;gene_sources=liftoff;ID=HG003_chrY_G0000594;Name=OFD1P8Y
HG003_chrY	CAT	transcript	22762027	22795061	1000	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_G0000594;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=HG003_chrY_T0001727;Name=OFD1P8Y
HG003_chrY	CAT	exon	22762027	22762133	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=exon:HG003_chrY_T0001727:0;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22762134	22763645	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=intron:HG003_chrY_T0001727:0;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22763646	22763773	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=exon:HG003_chrY_T0001727:1;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22763774	22764307	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=intron:HG003_chrY_T0001727:1;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22764308	22764417	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=exon:HG003_chrY_T0001727:2;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22764418	22766134	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=intron:HG003_chrY_T0001727:2;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22766135	22766750	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=exon:HG003_chrY_T0001727:3;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22766751	22767123	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=intron:HG003_chrY_T0001727:3;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22767124	22767234	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=exon:HG003_chrY_T0001727:4;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22767235	22786574	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=intron:HG003_chrY_T0001727:4;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22786575	22786675	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=exon:HG003_chrY_T0001727:5;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22786676	22793307	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=intron:HG003_chrY_T0001727:5;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22793308	22793459	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=exon:HG003_chrY_T0001727:6;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22793460	22794655	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=intron:HG003_chrY_T0001727:6;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22794656	22794721	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=exon:HG003_chrY_T0001727:7;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22794722	22795019	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=intron:HG003_chrY_T0001727:7;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22795020	22795061	.	+	.	source_transcript=ENST00000449148.1;source_transcript_name=OFD1P8Y-201;source_gene=ENSG00000231159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449148.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449148.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P8Y;alternative_source_transcripts=ENST00000449148.1;transcript_id=HG003_chrY_T0001727;gene_id=HG003_chrY_G0000594;Parent=HG003_chrY_T0001727;transcript_name=HG003_chrY_T0001727;gene_name=OFD1P8Y;ID=exon:HG003_chrY_T0001727:8;Name=OFD1P8Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22790848	22839199	.	-	.	source_gene_common_name=ENSG00000310035;source_gene=ENSG00000310035.1;gene_id=HG003_chrY_G0000595;gene_biotype=lncRNA;gene_name=ENSG00000310035;gene_sources=liftoff;ID=HG003_chrY_G0000595;Name=ENSG00000310035
HG003_chrY	CAT	transcript	22790848	22839138	1000	-	.	source_transcript=ENST00000846705.1;source_transcript_name=ENST00000846705;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846705.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001728;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_G0000595;transcript_name=HG003_chrY_T0001728;gene_name=ENSG00000310035;ID=HG003_chrY_T0001728;Name=ENSG00000310035
HG003_chrY	CAT	exon	22790848	22791122	.	-	.	source_transcript=ENST00000846705.1;source_transcript_name=ENST00000846705;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001728;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001728;transcript_name=HG003_chrY_T0001728;gene_name=ENSG00000310035;ID=exon:HG003_chrY_T0001728:0;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22791123	22798668	.	-	.	source_transcript=ENST00000846705.1;source_transcript_name=ENST00000846705;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001728;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001728;transcript_name=HG003_chrY_T0001728;gene_name=ENSG00000310035;ID=intron:HG003_chrY_T0001728:0;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22798669	22798971	.	-	.	source_transcript=ENST00000846705.1;source_transcript_name=ENST00000846705;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001728;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001728;transcript_name=HG003_chrY_T0001728;gene_name=ENSG00000310035;ID=exon:HG003_chrY_T0001728:1;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22798972	22834148	.	-	.	source_transcript=ENST00000846705.1;source_transcript_name=ENST00000846705;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001728;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001728;transcript_name=HG003_chrY_T0001728;gene_name=ENSG00000310035;ID=intron:HG003_chrY_T0001728:1;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22834149	22834310	.	-	.	source_transcript=ENST00000846705.1;source_transcript_name=ENST00000846705;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001728;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001728;transcript_name=HG003_chrY_T0001728;gene_name=ENSG00000310035;ID=exon:HG003_chrY_T0001728:2;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22834311	22838874	.	-	.	source_transcript=ENST00000846705.1;source_transcript_name=ENST00000846705;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001728;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001728;transcript_name=HG003_chrY_T0001728;gene_name=ENSG00000310035;ID=intron:HG003_chrY_T0001728:2;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22838875	22839138	.	-	.	source_transcript=ENST00000846705.1;source_transcript_name=ENST00000846705;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846705.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846705.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001728;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001728;transcript_name=HG003_chrY_T0001728;gene_name=ENSG00000310035;ID=exon:HG003_chrY_T0001728:3;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22798343	22839199	1000	-	.	source_transcript=ENST00000846706.1;source_transcript_name=ENST00000846706;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846706.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001729;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_G0000595;transcript_name=HG003_chrY_T0001729;gene_name=ENSG00000310035;ID=HG003_chrY_T0001729;Name=ENSG00000310035
HG003_chrY	CAT	exon	22798343	22798971	.	-	.	source_transcript=ENST00000846706.1;source_transcript_name=ENST00000846706;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001729;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001729;transcript_name=HG003_chrY_T0001729;gene_name=ENSG00000310035;ID=exon:HG003_chrY_T0001729:0;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22798972	22834148	.	-	.	source_transcript=ENST00000846706.1;source_transcript_name=ENST00000846706;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001729;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001729;transcript_name=HG003_chrY_T0001729;gene_name=ENSG00000310035;ID=intron:HG003_chrY_T0001729:0;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22834149	22834310	.	-	.	source_transcript=ENST00000846706.1;source_transcript_name=ENST00000846706;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001729;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001729;transcript_name=HG003_chrY_T0001729;gene_name=ENSG00000310035;ID=exon:HG003_chrY_T0001729:1;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22834311	22838874	.	-	.	source_transcript=ENST00000846706.1;source_transcript_name=ENST00000846706;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001729;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001729;transcript_name=HG003_chrY_T0001729;gene_name=ENSG00000310035;ID=intron:HG003_chrY_T0001729:1;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22838875	22839199	.	-	.	source_transcript=ENST00000846706.1;source_transcript_name=ENST00000846706;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846706.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846706.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001729;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001729;transcript_name=HG003_chrY_T0001729;gene_name=ENSG00000310035;ID=exon:HG003_chrY_T0001729:2;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22815845	22839185	1000	-	.	source_transcript=ENST00000846707.1;source_transcript_name=ENST00000846707;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846707.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001730;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_G0000595;transcript_name=HG003_chrY_T0001730;gene_name=ENSG00000310035;ID=HG003_chrY_T0001730;Name=ENSG00000310035
HG003_chrY	CAT	exon	22815845	22816212	.	-	.	source_transcript=ENST00000846707.1;source_transcript_name=ENST00000846707;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001730;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001730;transcript_name=HG003_chrY_T0001730;gene_name=ENSG00000310035;ID=exon:HG003_chrY_T0001730:0;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22816213	22838874	.	-	.	source_transcript=ENST00000846707.1;source_transcript_name=ENST00000846707;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001730;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001730;transcript_name=HG003_chrY_T0001730;gene_name=ENSG00000310035;ID=intron:HG003_chrY_T0001730:0;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22838875	22839185	.	-	.	source_transcript=ENST00000846707.1;source_transcript_name=ENST00000846707;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846707.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846707.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001730;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001730;transcript_name=HG003_chrY_T0001730;gene_name=ENSG00000310035;ID=exon:HG003_chrY_T0001730:1;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22815920	22839123	1000	-	.	source_transcript=ENST00000846708.1;source_transcript_name=ENST00000846708;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846708.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001731;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_G0000595;transcript_name=HG003_chrY_T0001731;gene_name=ENSG00000310035;ID=HG003_chrY_T0001731;Name=ENSG00000310035
HG003_chrY	CAT	exon	22815920	22816212	.	-	.	source_transcript=ENST00000846708.1;source_transcript_name=ENST00000846708;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001731;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001731;transcript_name=HG003_chrY_T0001731;gene_name=ENSG00000310035;ID=exon:HG003_chrY_T0001731:0;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22816213	22834152	.	-	.	source_transcript=ENST00000846708.1;source_transcript_name=ENST00000846708;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001731;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001731;transcript_name=HG003_chrY_T0001731;gene_name=ENSG00000310035;ID=intron:HG003_chrY_T0001731:0;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22834153	22834310	.	-	.	source_transcript=ENST00000846708.1;source_transcript_name=ENST00000846708;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001731;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001731;transcript_name=HG003_chrY_T0001731;gene_name=ENSG00000310035;ID=exon:HG003_chrY_T0001731:1;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22834311	22838874	.	-	.	source_transcript=ENST00000846708.1;source_transcript_name=ENST00000846708;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001731;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001731;transcript_name=HG003_chrY_T0001731;gene_name=ENSG00000310035;ID=intron:HG003_chrY_T0001731:1;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22838875	22839123	.	-	.	source_transcript=ENST00000846708.1;source_transcript_name=ENST00000846708;source_gene=ENSG00000310035.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310035.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000846708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000846708.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310035;transcript_id=HG003_chrY_T0001731;gene_id=HG003_chrY_G0000595;Parent=HG003_chrY_T0001731;transcript_name=HG003_chrY_T0001731;gene_name=ENSG00000310035;ID=exon:HG003_chrY_T0001731:2;Name=ENSG00000310035;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22818043	22821211	.	+	.	source_gene_common_name=ENSG00000295422;source_gene=ENSG00000295422.1;gene_id=HG003_chrY_G0000596;gene_biotype=lncRNA;gene_name=ENSG00000295422;gene_sources=liftoff;ID=HG003_chrY_G0000596;Name=ENSG00000295422
HG003_chrY	CAT	transcript	22818043	22821211	1000	+	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;transcript_id=HG003_chrY_T0001732;gene_id=HG003_chrY_G0000596;Parent=HG003_chrY_G0000596;transcript_name=HG003_chrY_T0001732;gene_name=ENSG00000295422;ID=HG003_chrY_T0001732;Name=ENSG00000295422
HG003_chrY	CAT	exon	22818043	22818153	.	+	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;transcript_id=HG003_chrY_T0001732;gene_id=HG003_chrY_G0000596;Parent=HG003_chrY_T0001732;transcript_name=HG003_chrY_T0001732;gene_name=ENSG00000295422;ID=exon:HG003_chrY_T0001732:0;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22818154	22818270	.	+	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;transcript_id=HG003_chrY_T0001732;gene_id=HG003_chrY_G0000596;Parent=HG003_chrY_T0001732;transcript_name=HG003_chrY_T0001732;gene_name=ENSG00000295422;ID=intron:HG003_chrY_T0001732:0;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22818271	22818331	.	+	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;transcript_id=HG003_chrY_T0001732;gene_id=HG003_chrY_G0000596;Parent=HG003_chrY_T0001732;transcript_name=HG003_chrY_T0001732;gene_name=ENSG00000295422;ID=exon:HG003_chrY_T0001732:1;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22818332	22819866	.	+	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;transcript_id=HG003_chrY_T0001732;gene_id=HG003_chrY_G0000596;Parent=HG003_chrY_T0001732;transcript_name=HG003_chrY_T0001732;gene_name=ENSG00000295422;ID=intron:HG003_chrY_T0001732:1;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22819867	22821211	.	+	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;transcript_id=HG003_chrY_T0001732;gene_id=HG003_chrY_G0000596;Parent=HG003_chrY_T0001732;transcript_name=HG003_chrY_T0001732;gene_name=ENSG00000295422;ID=exon:HG003_chrY_T0001732:2;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22838275	22839068	.	-	.	source_gene_common_name=HSFY5P;source_gene=ENSG00000232475.1;gene_id=HG003_chrY_G0000597;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=HSFY5P;gene_sources=liftoff;ID=HG003_chrY_G0000597;Name=HSFY5P
HG003_chrY	CAT	transcript	22838275	22839068	1000	-	.	source_transcript=ENST00000453726.1;source_transcript_name=HSFY5P-201;source_gene=ENSG00000232475.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232475.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000453726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453726.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY5P;transcript_id=HG003_chrY_T0001733;gene_id=HG003_chrY_G0000597;Parent=HG003_chrY_G0000597;transcript_name=HG003_chrY_T0001733;gene_name=HSFY5P;ID=HG003_chrY_T0001733;Name=HSFY5P
HG003_chrY	CAT	exon	22838275	22838424	.	-	.	source_transcript=ENST00000453726.1;source_transcript_name=HSFY5P-201;source_gene=ENSG00000232475.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232475.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000453726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY5P;transcript_id=HG003_chrY_T0001733;gene_id=HG003_chrY_G0000597;Parent=HG003_chrY_T0001733;transcript_name=HG003_chrY_T0001733;gene_name=HSFY5P;ID=exon:HG003_chrY_T0001733:0;Name=HSFY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22838425	22838909	.	-	.	source_transcript=ENST00000453726.1;source_transcript_name=HSFY5P-201;source_gene=ENSG00000232475.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232475.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000453726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY5P;transcript_id=HG003_chrY_T0001733;gene_id=HG003_chrY_G0000597;Parent=HG003_chrY_T0001733;transcript_name=HG003_chrY_T0001733;gene_name=HSFY5P;ID=intron:HG003_chrY_T0001733:0;Name=HSFY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22838910	22839068	.	-	.	source_transcript=ENST00000453726.1;source_transcript_name=HSFY5P-201;source_gene=ENSG00000232475.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000232475.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000453726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453726.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY5P;transcript_id=HG003_chrY_T0001733;gene_id=HG003_chrY_G0000597;Parent=HG003_chrY_T0001733;transcript_name=HG003_chrY_T0001733;gene_name=HSFY5P;ID=exon:HG003_chrY_T0001733:1;Name=HSFY5P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22839476	22847834	.	-	.	source_gene_common_name=USP9YP17;source_gene=ENSG00000229553.1;alternative_source_transcripts=ENST00000444617.1;gene_id=HG003_chrY_G0000598;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP17;gene_sources=liftoff;ID=HG003_chrY_G0000598;Name=USP9YP17
HG003_chrY	CAT	transcript	22839476	22847834	1000	-	.	source_transcript=ENST00000444617.1;source_transcript_name=USP9YP17-201;source_gene=ENSG00000229553.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229553.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444617.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP17;alternative_source_transcripts=ENST00000444617.1;transcript_id=HG003_chrY_T0001734;gene_id=HG003_chrY_G0000598;Parent=HG003_chrY_G0000598;transcript_name=HG003_chrY_T0001734;gene_name=USP9YP17;ID=HG003_chrY_T0001734;Name=USP9YP17
HG003_chrY	CAT	exon	22839476	22839514	.	-	.	source_transcript=ENST00000444617.1;source_transcript_name=USP9YP17-201;source_gene=ENSG00000229553.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229553.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444617.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP17;alternative_source_transcripts=ENST00000444617.1;transcript_id=HG003_chrY_T0001734;gene_id=HG003_chrY_G0000598;Parent=HG003_chrY_T0001734;transcript_name=HG003_chrY_T0001734;gene_name=USP9YP17;ID=exon:HG003_chrY_T0001734:0;Name=USP9YP17;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22839515	22841230	.	-	.	source_transcript=ENST00000444617.1;source_transcript_name=USP9YP17-201;source_gene=ENSG00000229553.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229553.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444617.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP17;alternative_source_transcripts=ENST00000444617.1;transcript_id=HG003_chrY_T0001734;gene_id=HG003_chrY_G0000598;Parent=HG003_chrY_T0001734;transcript_name=HG003_chrY_T0001734;gene_name=USP9YP17;ID=intron:HG003_chrY_T0001734:0;Name=USP9YP17;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22841231	22841359	.	-	.	source_transcript=ENST00000444617.1;source_transcript_name=USP9YP17-201;source_gene=ENSG00000229553.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229553.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444617.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP17;alternative_source_transcripts=ENST00000444617.1;transcript_id=HG003_chrY_T0001734;gene_id=HG003_chrY_G0000598;Parent=HG003_chrY_T0001734;transcript_name=HG003_chrY_T0001734;gene_name=USP9YP17;ID=exon:HG003_chrY_T0001734:1;Name=USP9YP17;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22841360	22843717	.	-	.	source_transcript=ENST00000444617.1;source_transcript_name=USP9YP17-201;source_gene=ENSG00000229553.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229553.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444617.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP17;alternative_source_transcripts=ENST00000444617.1;transcript_id=HG003_chrY_T0001734;gene_id=HG003_chrY_G0000598;Parent=HG003_chrY_T0001734;transcript_name=HG003_chrY_T0001734;gene_name=USP9YP17;ID=intron:HG003_chrY_T0001734:1;Name=USP9YP17;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22843718	22843906	.	-	.	source_transcript=ENST00000444617.1;source_transcript_name=USP9YP17-201;source_gene=ENSG00000229553.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229553.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444617.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP17;alternative_source_transcripts=ENST00000444617.1;transcript_id=HG003_chrY_T0001734;gene_id=HG003_chrY_G0000598;Parent=HG003_chrY_T0001734;transcript_name=HG003_chrY_T0001734;gene_name=USP9YP17;ID=exon:HG003_chrY_T0001734:2;Name=USP9YP17;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22843907	22845692	.	-	.	source_transcript=ENST00000444617.1;source_transcript_name=USP9YP17-201;source_gene=ENSG00000229553.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229553.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444617.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP17;alternative_source_transcripts=ENST00000444617.1;transcript_id=HG003_chrY_T0001734;gene_id=HG003_chrY_G0000598;Parent=HG003_chrY_T0001734;transcript_name=HG003_chrY_T0001734;gene_name=USP9YP17;ID=intron:HG003_chrY_T0001734:2;Name=USP9YP17;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22845693	22845810	.	-	.	source_transcript=ENST00000444617.1;source_transcript_name=USP9YP17-201;source_gene=ENSG00000229553.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229553.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444617.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP17;alternative_source_transcripts=ENST00000444617.1;transcript_id=HG003_chrY_T0001734;gene_id=HG003_chrY_G0000598;Parent=HG003_chrY_T0001734;transcript_name=HG003_chrY_T0001734;gene_name=USP9YP17;ID=exon:HG003_chrY_T0001734:3;Name=USP9YP17;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22845811	22847613	.	-	.	source_transcript=ENST00000444617.1;source_transcript_name=USP9YP17-201;source_gene=ENSG00000229553.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229553.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444617.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP17;alternative_source_transcripts=ENST00000444617.1;transcript_id=HG003_chrY_T0001734;gene_id=HG003_chrY_G0000598;Parent=HG003_chrY_T0001734;transcript_name=HG003_chrY_T0001734;gene_name=USP9YP17;ID=intron:HG003_chrY_T0001734:3;Name=USP9YP17;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22847614	22847834	.	-	.	source_transcript=ENST00000444617.1;source_transcript_name=USP9YP17-201;source_gene=ENSG00000229553.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229553.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444617.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP17;alternative_source_transcripts=ENST00000444617.1;transcript_id=HG003_chrY_T0001734;gene_id=HG003_chrY_G0000598;Parent=HG003_chrY_T0001734;transcript_name=HG003_chrY_T0001734;gene_name=USP9YP17;ID=exon:HG003_chrY_T0001734:4;Name=USP9YP17;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22854419	22855433	.	+	.	source_gene_common_name=CDY12P;source_gene=ENSG00000228850.1;alternative_source_transcripts=ENST00000440679.1;gene_id=HG003_chrY_G0000599;gene_biotype=unprocessed_pseudogene;gene_name=CDY12P;gene_sources=liftoff;ID=HG003_chrY_G0000599;Name=CDY12P
HG003_chrY	CAT	transcript	22854419	22855433	1000	+	.	source_transcript=ENST00000440679.1;source_transcript_name=CDY12P-201;source_gene=ENSG00000228850.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228850.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440679.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY12P;alternative_source_transcripts=ENST00000440679.1;transcript_id=HG003_chrY_T0001735;gene_id=HG003_chrY_G0000599;Parent=HG003_chrY_G0000599;transcript_name=HG003_chrY_T0001735;gene_name=CDY12P;ID=HG003_chrY_T0001735;Name=CDY12P
HG003_chrY	CAT	exon	22854419	22855433	.	+	.	source_transcript=ENST00000440679.1;source_transcript_name=CDY12P-201;source_gene=ENSG00000228850.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228850.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440679.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440679.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY12P;alternative_source_transcripts=ENST00000440679.1;transcript_id=HG003_chrY_T0001735;gene_id=HG003_chrY_G0000599;Parent=HG003_chrY_T0001735;transcript_name=HG003_chrY_T0001735;gene_name=CDY12P;ID=exon:HG003_chrY_T0001735:0;Name=CDY12P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22858541	22858872	.	+	.	source_gene_common_name=ELOCP15;source_gene=ENSG00000232029.1;alternative_source_transcripts=ENST00000442090.1;gene_id=HG003_chrY_G0000600;gene_biotype=processed_pseudogene;gene_name=ELOCP15;gene_sources=liftoff;ID=HG003_chrY_G0000600;Name=ELOCP15
HG003_chrY	CAT	transcript	22858541	22858872	1000	+	.	source_transcript=ENST00000442090.1;source_transcript_name=ELOCP15-201;source_gene=ENSG00000232029.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232029.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000442090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442090.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP15;alternative_source_transcripts=ENST00000442090.1;transcript_id=HG003_chrY_T0001736;gene_id=HG003_chrY_G0000600;Parent=HG003_chrY_G0000600;transcript_name=HG003_chrY_T0001736;gene_name=ELOCP15;ID=HG003_chrY_T0001736;Name=ELOCP15
HG003_chrY	CAT	exon	22858541	22858872	.	+	.	source_transcript=ENST00000442090.1;source_transcript_name=ELOCP15-201;source_gene=ENSG00000232029.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232029.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000442090.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442090.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP15;alternative_source_transcripts=ENST00000442090.1;transcript_id=HG003_chrY_T0001736;gene_id=HG003_chrY_G0000600;Parent=HG003_chrY_T0001736;transcript_name=HG003_chrY_T0001736;gene_name=ELOCP15;ID=exon:HG003_chrY_T0001736:0;Name=ELOCP15;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22861477	22937204	.	-	.	source_gene_common_name=ENSG00000236951;source_gene=ENSG00000236951.7;alternative_source_transcripts=ENST00000303804.6;gene_id=HG003_chrY_G0000601;gene_biotype=lncRNA;gene_name=ENSG00000236951;gene_sources=liftoff;ID=HG003_chrY_G0000601;Name=ENSG00000236951
HG003_chrY	CAT	transcript	22861477	22892104	1000	-	.	source_transcript=ENST00000303804.6;source_transcript_name=ENST00000303804;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303804.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000303804.6;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000303804.6;transcript_id=HG003_chrY_T0001737;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_G0000601;transcript_name=HG003_chrY_T0001737;gene_name=ENSG00000236951;ID=HG003_chrY_T0001737;Name=ENSG00000236951
HG003_chrY	CAT	exon	22861477	22862302	.	-	.	source_transcript=ENST00000303804.6;source_transcript_name=ENST00000303804;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303804.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000303804.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000303804.6;transcript_id=HG003_chrY_T0001737;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001737;transcript_name=HG003_chrY_T0001737;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001737:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22862303	22871792	.	-	.	source_transcript=ENST00000303804.6;source_transcript_name=ENST00000303804;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303804.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000303804.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000303804.6;transcript_id=HG003_chrY_T0001737;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001737;transcript_name=HG003_chrY_T0001737;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001737:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22871793	22871908	.	-	.	source_transcript=ENST00000303804.6;source_transcript_name=ENST00000303804;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303804.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000303804.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000303804.6;transcript_id=HG003_chrY_T0001737;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001737;transcript_name=HG003_chrY_T0001737;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001737:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22871909	22874483	.	-	.	source_transcript=ENST00000303804.6;source_transcript_name=ENST00000303804;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303804.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000303804.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000303804.6;transcript_id=HG003_chrY_T0001737;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001737;transcript_name=HG003_chrY_T0001737;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001737:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22874484	22874604	.	-	.	source_transcript=ENST00000303804.6;source_transcript_name=ENST00000303804;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303804.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000303804.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000303804.6;transcript_id=HG003_chrY_T0001737;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001737;transcript_name=HG003_chrY_T0001737;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001737:2;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22874605	22885445	.	-	.	source_transcript=ENST00000303804.6;source_transcript_name=ENST00000303804;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303804.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000303804.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000303804.6;transcript_id=HG003_chrY_T0001737;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001737;transcript_name=HG003_chrY_T0001737;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001737:2;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22885446	22885532	.	-	.	source_transcript=ENST00000303804.6;source_transcript_name=ENST00000303804;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303804.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000303804.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000303804.6;transcript_id=HG003_chrY_T0001737;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001737;transcript_name=HG003_chrY_T0001737;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001737:3;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22885533	22885633	.	-	.	source_transcript=ENST00000303804.6;source_transcript_name=ENST00000303804;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303804.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000303804.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000303804.6;transcript_id=HG003_chrY_T0001737;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001737;transcript_name=HG003_chrY_T0001737;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001737:3;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22885634	22885722	.	-	.	source_transcript=ENST00000303804.6;source_transcript_name=ENST00000303804;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303804.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000303804.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000303804.6;transcript_id=HG003_chrY_T0001737;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001737;transcript_name=HG003_chrY_T0001737;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001737:4;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22885723	22891839	.	-	.	source_transcript=ENST00000303804.6;source_transcript_name=ENST00000303804;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303804.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000303804.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000303804.6;transcript_id=HG003_chrY_T0001737;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001737;transcript_name=HG003_chrY_T0001737;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001737:4;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22891840	22892104	.	-	.	source_transcript=ENST00000303804.6;source_transcript_name=ENST00000303804;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303804.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000303804.6;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000303804.6;transcript_id=HG003_chrY_T0001737;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001737;transcript_name=HG003_chrY_T0001737;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001737:5;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22861477	22892104	1000	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_G0000601;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=HG003_chrY_T0001738;Name=ENSG00000236951
HG003_chrY	CAT	exon	22861477	22862302	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001738:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22862303	22863364	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001738:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22863365	22863479	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001738:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22863480	22871792	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001738:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22871793	22871908	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001738:2;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22871909	22874483	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001738:2;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22874484	22874604	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001738:3;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22874605	22885445	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001738:3;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22885446	22885532	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001738:4;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22885533	22885633	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001738:4;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22885634	22885722	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001738:5;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22885723	22891839	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001738:5;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22891840	22892104	.	-	.	source_transcript=ENST00000472391.2;source_transcript_name=ENST00000472391;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000472391.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000472391.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000472391.2;transcript_id=HG003_chrY_T0001738;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001738;transcript_name=HG003_chrY_T0001738;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001738:6;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22890549	22895604	1000	-	.	source_transcript=ENST00000417910.5;source_transcript_name=ENST00000417910;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417910.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000417910.5;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000417910.5;transcript_id=HG003_chrY_T0001739;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_G0000601;transcript_name=HG003_chrY_T0001739;gene_name=ENSG00000236951;ID=HG003_chrY_T0001739;Name=ENSG00000236951
HG003_chrY	CAT	exon	22890549	22890790	.	-	.	source_transcript=ENST00000417910.5;source_transcript_name=ENST00000417910;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417910.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000417910.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000417910.5;transcript_id=HG003_chrY_T0001739;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001739;transcript_name=HG003_chrY_T0001739;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001739:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22890791	22891839	.	-	.	source_transcript=ENST00000417910.5;source_transcript_name=ENST00000417910;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417910.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000417910.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000417910.5;transcript_id=HG003_chrY_T0001739;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001739;transcript_name=HG003_chrY_T0001739;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001739:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22891840	22892104	.	-	.	source_transcript=ENST00000417910.5;source_transcript_name=ENST00000417910;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417910.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000417910.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000417910.5;transcript_id=HG003_chrY_T0001739;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001739;transcript_name=HG003_chrY_T0001739;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001739:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22892105	22892619	.	-	.	source_transcript=ENST00000417910.5;source_transcript_name=ENST00000417910;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417910.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000417910.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000417910.5;transcript_id=HG003_chrY_T0001739;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001739;transcript_name=HG003_chrY_T0001739;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001739:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22892620	22892737	.	-	.	source_transcript=ENST00000417910.5;source_transcript_name=ENST00000417910;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417910.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000417910.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000417910.5;transcript_id=HG003_chrY_T0001739;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001739;transcript_name=HG003_chrY_T0001739;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001739:2;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22892738	22895484	.	-	.	source_transcript=ENST00000417910.5;source_transcript_name=ENST00000417910;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417910.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000417910.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000417910.5;transcript_id=HG003_chrY_T0001739;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001739;transcript_name=HG003_chrY_T0001739;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001739:2;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22895485	22895604	.	-	.	source_transcript=ENST00000417910.5;source_transcript_name=ENST00000417910;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417910.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000417910.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000417910.5;transcript_id=HG003_chrY_T0001739;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001739;transcript_name=HG003_chrY_T0001739;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001739:3;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22891240	22911202	1000	-	.	source_transcript=ENST00000775784.1;source_transcript_name=ENST00000775784;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000775784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000775784.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000775784.1;transcript_id=HG003_chrY_T0001740;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_G0000601;transcript_name=HG003_chrY_T0001740;gene_name=ENSG00000236951;ID=HG003_chrY_T0001740;Name=ENSG00000236951
HG003_chrY	CAT	exon	22891240	22892104	.	-	.	source_transcript=ENST00000775784.1;source_transcript_name=ENST00000775784;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000775784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000775784.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000775784.1;transcript_id=HG003_chrY_T0001740;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001740;transcript_name=HG003_chrY_T0001740;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001740:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22892105	22892619	.	-	.	source_transcript=ENST00000775784.1;source_transcript_name=ENST00000775784;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000775784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000775784.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000775784.1;transcript_id=HG003_chrY_T0001740;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001740;transcript_name=HG003_chrY_T0001740;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001740:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22892620	22892741	.	-	.	source_transcript=ENST00000775784.1;source_transcript_name=ENST00000775784;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000775784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000775784.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000775784.1;transcript_id=HG003_chrY_T0001740;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001740;transcript_name=HG003_chrY_T0001740;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001740:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22892742	22911005	.	-	.	source_transcript=ENST00000775784.1;source_transcript_name=ENST00000775784;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000775784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000775784.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000775784.1;transcript_id=HG003_chrY_T0001740;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001740;transcript_name=HG003_chrY_T0001740;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001740:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22911006	22911202	.	-	.	source_transcript=ENST00000775784.1;source_transcript_name=ENST00000775784;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000775784.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000775784.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000775784.1;transcript_id=HG003_chrY_T0001740;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001740;transcript_name=HG003_chrY_T0001740;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001740:2;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22891427	22937204	1000	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_G0000601;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=HG003_chrY_T0001741;Name=ENSG00000236951
HG003_chrY	CAT	exon	22891427	22892104	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22892105	22892619	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001741:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22892620	22892737	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22892738	22893281	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001741:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22893282	22893478	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:2;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22893479	22893598	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001741:2;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22893599	22893684	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:3;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22893685	22895484	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001741:3;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22895485	22895820	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:4;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22895821	22897286	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001741:4;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22897287	22897376	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:5;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22897377	22911005	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001741:5;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22911006	22911359	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:6;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22911360	22911789	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001741:6;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22911790	22911908	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:7;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22911909	22919086	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001741:7;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22919087	22919172	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:8;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22919173	22919480	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001741:8;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22919481	22919703	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:9;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22919704	22929669	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001741:9;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22929670	22929810	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:10;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22929811	22936359	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001741:10;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22936360	22936669	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:11;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22936670	22937003	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001741:11;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22937004	22937204	.	-	.	source_transcript=ENST00000419158.1;source_transcript_name=ENST00000419158;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000419158.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419158.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000419158.1;transcript_id=HG003_chrY_T0001741;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001741;transcript_name=HG003_chrY_T0001741;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001741:12;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22909200	22911212	1000	-	.	source_transcript=ENST00000775785.1;source_transcript_name=ENST00000775785;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000775785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000775785.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000775785.1;transcript_id=HG003_chrY_T0001742;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_G0000601;transcript_name=HG003_chrY_T0001742;gene_name=ENSG00000236951;ID=HG003_chrY_T0001742;Name=ENSG00000236951
HG003_chrY	CAT	exon	22909200	22909409	.	-	.	source_transcript=ENST00000775785.1;source_transcript_name=ENST00000775785;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000775785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000775785.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000775785.1;transcript_id=HG003_chrY_T0001742;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001742;transcript_name=HG003_chrY_T0001742;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001742:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22909410	22911005	.	-	.	source_transcript=ENST00000775785.1;source_transcript_name=ENST00000775785;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000775785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000775785.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000775785.1;transcript_id=HG003_chrY_T0001742;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001742;transcript_name=HG003_chrY_T0001742;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001742:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22911006	22911212	.	-	.	source_transcript=ENST00000775785.1;source_transcript_name=ENST00000775785;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000775785.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000775785.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000775785.1;transcript_id=HG003_chrY_T0001742;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001742;transcript_name=HG003_chrY_T0001742;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001742:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22926109	22937130	1000	-	.	source_transcript=ENST00000774613.1;source_transcript_name=ENST00000774613;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000774613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000774613.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000774613.1;transcript_id=HG003_chrY_T0001744;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_G0000601;transcript_name=HG003_chrY_T0001744;gene_name=ENSG00000236951;ID=HG003_chrY_T0001744;Name=ENSG00000236951
HG003_chrY	CAT	exon	22926109	22926903	.	-	.	source_transcript=ENST00000774613.1;source_transcript_name=ENST00000774613;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000774613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000774613.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000774613.1;transcript_id=HG003_chrY_T0001744;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001744;transcript_name=HG003_chrY_T0001744;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001744:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22926904	22929669	.	-	.	source_transcript=ENST00000774613.1;source_transcript_name=ENST00000774613;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000774613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000774613.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000774613.1;transcript_id=HG003_chrY_T0001744;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001744;transcript_name=HG003_chrY_T0001744;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001744:0;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22929670	22929810	.	-	.	source_transcript=ENST00000774613.1;source_transcript_name=ENST00000774613;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000774613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000774613.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000774613.1;transcript_id=HG003_chrY_T0001744;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001744;transcript_name=HG003_chrY_T0001744;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001744:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22929811	22937003	.	-	.	source_transcript=ENST00000774613.1;source_transcript_name=ENST00000774613;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000774613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000774613.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000774613.1;transcript_id=HG003_chrY_T0001744;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001744;transcript_name=HG003_chrY_T0001744;gene_name=ENSG00000236951;ID=intron:HG003_chrY_T0001744:1;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22937004	22937130	.	-	.	source_transcript=ENST00000774613.1;source_transcript_name=ENST00000774613;source_gene=ENSG00000236951.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000236951.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000774613.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000774613.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236951;alternative_source_transcripts=ENST00000774613.1;transcript_id=HG003_chrY_T0001744;gene_id=HG003_chrY_G0000601;Parent=HG003_chrY_T0001744;transcript_name=HG003_chrY_T0001744;gene_name=ENSG00000236951;ID=exon:HG003_chrY_T0001744:2;Name=ENSG00000236951;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22921666	22936551	.	+	.	source_gene_common_name=TTTY6;source_gene=ENSG00000131538.8;alternative_source_transcripts=ENST00000253848.4;gene_id=HG003_chrY_G0000602;gene_biotype=lncRNA;gene_name=TTTY6;gene_sources=liftoff;ID=HG003_chrY_G0000602;Name=TTTY6
HG003_chrY	CAT	transcript	22921666	22936551	1000	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_G0000602;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=HG003_chrY_T0001743;Name=TTTY6
HG003_chrY	CAT	exon	22921666	22921720	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=exon:HG003_chrY_T0001743:0;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22921721	22924099	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=intron:HG003_chrY_T0001743:0;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22924100	22924173	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=exon:HG003_chrY_T0001743:1;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22924174	22928913	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=intron:HG003_chrY_T0001743:1;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22928914	22929075	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=exon:HG003_chrY_T0001743:2;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22929076	22931357	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=intron:HG003_chrY_T0001743:2;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22931358	22931518	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=exon:HG003_chrY_T0001743:3;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22931519	22934685	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=intron:HG003_chrY_T0001743:3;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22934686	22934799	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=exon:HG003_chrY_T0001743:4;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22934800	22935017	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=intron:HG003_chrY_T0001743:4;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22935018	22935155	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=exon:HG003_chrY_T0001743:5;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22935156	22936312	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=intron:HG003_chrY_T0001743:5;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22936313	22936551	.	+	.	source_transcript=ENST00000253838.4;source_transcript_name=TTTY6-201;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000253838.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000253838.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;alternative_source_transcripts=ENST00000253848.4;transcript_id=HG003_chrY_T0001743;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001743;transcript_name=HG003_chrY_T0001743;gene_name=TTTY6;ID=exon:HG003_chrY_T0001743:6;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22932408	22936549	1000	+	.	source_transcript=ENST00000769610.1;source_transcript_name=TTTY6-202;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000769610.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000769610.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=HG003_chrY_T0001745;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_G0000602;transcript_name=HG003_chrY_T0001745;gene_name=TTTY6;ID=HG003_chrY_T0001745;Name=TTTY6
HG003_chrY	CAT	exon	22932408	22932688	.	+	.	source_transcript=ENST00000769610.1;source_transcript_name=TTTY6-202;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000769610.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000769610.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=HG003_chrY_T0001745;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001745;transcript_name=HG003_chrY_T0001745;gene_name=TTTY6;ID=exon:HG003_chrY_T0001745:0;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22932689	22936312	.	+	.	source_transcript=ENST00000769610.1;source_transcript_name=TTTY6-202;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000769610.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000769610.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=HG003_chrY_T0001745;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001745;transcript_name=HG003_chrY_T0001745;gene_name=TTTY6;ID=intron:HG003_chrY_T0001745:0;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22936313	22936549	.	+	.	source_transcript=ENST00000769610.1;source_transcript_name=TTTY6-202;source_gene=ENSG00000131538.8;source_gene_biotype=lncRNA;original_gene_id=ENSG00000131538.8;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000769610.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000769610.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY6;transcript_id=HG003_chrY_T0001745;gene_id=HG003_chrY_G0000602;Parent=HG003_chrY_T0001745;transcript_name=HG003_chrY_T0001745;gene_name=TTTY6;ID=exon:HG003_chrY_T0001745:1;Name=TTTY6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22958265	22972708	.	-	.	source_gene_common_name=RBMY1F;source_gene=ENSG00000169800.14;gene_id=HG003_chrY_G0000603;gene_biotype=protein_coding;gene_name=RBMY1F;gene_sources=liftoff;ID=HG003_chrY_G0000603;Name=RBMY1F
HG003_chrY	CAT	transcript	22958265	22972649	100	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_G0000603;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=HG003_chrY_T0001746;Name=RBMY1F
HG003_chrY	CAT	exon	22958265	22958841	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001746:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22958543	22958841	.	-	2	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001746:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22958543	22958545	.	-	0	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=stop_codon:HG003_chrY_T0001746;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22958842	22959252	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001746:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22959253	22959341	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001746:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22959253	22959341	.	-	1	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001746:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22959342	22959427	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001746:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22959428	22959538	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001746:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22959428	22959538	.	-	1	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001746:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22959539	22960461	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001746:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22960462	22960572	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001746:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22960462	22960572	.	-	1	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001746:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22960573	22961006	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001746:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961007	22961117	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001746:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22961007	22961117	.	-	1	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001746:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961118	22961557	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001746:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961558	22961668	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001746:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22961558	22961668	.	-	1	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001746:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961669	22962623	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001746:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22962624	22962738	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001746:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22962624	22962738	.	-	2	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001746:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22962739	22964748	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001746:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22964749	22964901	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001746:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22964749	22964901	.	-	2	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001746:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22964902	22966816	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001746:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22966817	22966994	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001746:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22966817	22966994	.	-	0	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001746:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22966995	22970016	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001746:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970017	22970120	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001746:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22970017	22970120	.	-	2	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001746:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22970121	22970586	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001746:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970587	22970699	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001746:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22970587	22970695	.	-	0	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001746:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22970693	22970695	.	-	0	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=start_codon:HG003_chrY_T0001746;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22970700	22972560	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001746:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22972561	22972649	.	-	.	source_transcript=ENST00000303766.12;source_transcript_name=RBMY1F-201;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000303766.12;alignment_mode=liftoff;normalized_transcript_id=ENST00000303766.12;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001746;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001746;transcript_name=HG003_chrY_T0001746;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001746:11;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22958265	22972708	100	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_G0000603;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=HG003_chrY_T0001747;Name=RBMY1F
HG003_chrY	CAT	exon	22958265	22958841	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001747:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22958543	22958841	.	-	2	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001747:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	22958543	22958545	.	-	0	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=stop_codon:HG003_chrY_T0001747;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22958842	22959252	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001747:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22959253	22959341	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001747:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22959253	22959341	.	-	1	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001747:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22959342	22960461	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001747:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22960462	22960572	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001747:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22960462	22960572	.	-	1	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001747:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22960573	22961006	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001747:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961007	22961117	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001747:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22961007	22961117	.	-	1	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001747:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961118	22961557	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001747:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961558	22961668	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001747:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22961558	22961668	.	-	1	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001747:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961669	22962623	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001747:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22962624	22962738	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001747:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22962624	22962738	.	-	2	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001747:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22962739	22964748	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001747:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22964749	22964901	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001747:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22964749	22964901	.	-	2	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001747:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22964902	22966816	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001747:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22966817	22966994	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001747:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22966817	22966994	.	-	0	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001747:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22966995	22970016	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001747:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970017	22970120	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001747:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22970017	22970120	.	-	2	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001747:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22970121	22970586	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001747:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970587	22970699	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001747:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	22970587	22970695	.	-	0	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=CDS:HG003_chrY_T0001747:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	22970693	22970695	.	-	0	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=start_codon:HG003_chrY_T0001747;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22970700	22972560	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001747:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22972561	22972708	.	-	.	source_transcript=ENST00000454978.2;source_transcript_name=RBMY1F-202;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000454978.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000454978.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001747;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001747;transcript_name=HG003_chrY_T0001747;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001747:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22958265	22972683	1000	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_G0000603;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=HG003_chrY_T0001748;Name=RBMY1F
HG003_chrY	CAT	exon	22958265	22958841	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001748:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22958842	22959252	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001748:0;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22959253	22959341	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001748:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22959342	22959427	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001748:1;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22959428	22959538	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001748:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22959539	22960461	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001748:2;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22960462	22960572	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001748:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22960573	22961006	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001748:3;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961007	22961117	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001748:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961118	22961557	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001748:4;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22961558	22961668	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001748:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22961669	22962623	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001748:5;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22962624	22962738	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001748:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22962739	22964748	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001748:6;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22964749	22964901	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001748:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22964902	22970016	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001748:7;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970017	22970120	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001748:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22970121	22970586	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001748:8;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22970587	22970699	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001748:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22970700	22972560	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=intron:HG003_chrY_T0001748:9;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22972561	22972683	.	-	.	source_transcript=ENST00000481858.1;source_transcript_name=RBMY1F-203;source_gene=ENSG00000169800.14;source_gene_biotype=protein_coding;original_gene_id=ENSG00000169800.14;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000481858.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000481858.1;transcript_score=299.942;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1F;transcript_id=HG003_chrY_T0001748;gene_id=HG003_chrY_G0000603;Parent=HG003_chrY_T0001748;transcript_name=HG003_chrY_T0001748;gene_name=RBMY1F;ID=exon:HG003_chrY_T0001748:10;Name=RBMY1F;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	22982073	23018032	.	+	.	source_gene_common_name=ENSG00000235059;source_gene=ENSG00000235059.7;gene_id=HG003_chrY_G0000604;gene_biotype=lncRNA;gene_name=ENSG00000235059;gene_sources=transMap;ID=HG003_chrY_G0000604;Name=ENSG00000235059
HG003_chrY	CAT	transcript	22982073	22988274	1000	+	.	source_transcript=ENST00000801164.1;source_transcript_name=ENST00000801164;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801164.1;alignment_mode=transMap;normalized_transcript_id=ENST00000801164.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001749;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_G0000604;transcript_name=HG003_chrY_T0001749;gene_name=ENSG00000235059;ID=HG003_chrY_T0001749;Name=ENSG00000235059
HG003_chrY	CAT	exon	22982073	22982234	.	+	.	source_transcript=ENST00000801164.1;source_transcript_name=ENST00000801164;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801164.1;alignment_mode=transMap;normalized_transcript_id=ENST00000801164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001749;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001749;transcript_name=HG003_chrY_T0001749;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001749:0;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22982235	22983700	.	+	.	source_transcript=ENST00000801164.1;source_transcript_name=ENST00000801164;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801164.1;alignment_mode=transMap;normalized_transcript_id=ENST00000801164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001749;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001749;transcript_name=HG003_chrY_T0001749;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001749:0;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22983701	22984036	.	+	.	source_transcript=ENST00000801164.1;source_transcript_name=ENST00000801164;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801164.1;alignment_mode=transMap;normalized_transcript_id=ENST00000801164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001749;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001749;transcript_name=HG003_chrY_T0001749;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001749:1;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22984037	22986779	.	+	.	source_transcript=ENST00000801164.1;source_transcript_name=ENST00000801164;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801164.1;alignment_mode=transMap;normalized_transcript_id=ENST00000801164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001749;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001749;transcript_name=HG003_chrY_T0001749;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001749:1;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22986780	22986901	.	+	.	source_transcript=ENST00000801164.1;source_transcript_name=ENST00000801164;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801164.1;alignment_mode=transMap;normalized_transcript_id=ENST00000801164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001749;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001749;transcript_name=HG003_chrY_T0001749;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001749:2;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22986902	22987416	.	+	.	source_transcript=ENST00000801164.1;source_transcript_name=ENST00000801164;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801164.1;alignment_mode=transMap;normalized_transcript_id=ENST00000801164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001749;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001749;transcript_name=HG003_chrY_T0001749;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001749:2;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22987417	22988274	.	+	.	source_transcript=ENST00000801164.1;source_transcript_name=ENST00000801164;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801164.1;alignment_mode=transMap;normalized_transcript_id=ENST00000801164.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001749;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001749;transcript_name=HG003_chrY_T0001749;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001749:3;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22982145	22988094	1000	+	.	source_transcript=ENST00000446299.6;source_transcript_name=ENST00000446299;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000446299.6;alignment_mode=transMap;normalized_transcript_id=ENST00000446299.6;transcript_score=250.931;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001750;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_G0000604;transcript_name=HG003_chrY_T0001750;gene_name=ENSG00000235059;ID=HG003_chrY_T0001750;Name=ENSG00000235059
HG003_chrY	CAT	exon	22982145	22982234	.	+	.	source_transcript=ENST00000446299.6;source_transcript_name=ENST00000446299;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000446299.6;alignment_mode=transMap;normalized_transcript_id=ENST00000446299.6;transcript_score=250.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001750;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001750;transcript_name=HG003_chrY_T0001750;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001750:0;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22982235	22983700	.	+	.	source_transcript=ENST00000446299.6;source_transcript_name=ENST00000446299;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000446299.6;alignment_mode=transMap;normalized_transcript_id=ENST00000446299.6;transcript_score=250.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001750;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001750;transcript_name=HG003_chrY_T0001750;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001750:0;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22983701	22984036	.	+	.	source_transcript=ENST00000446299.6;source_transcript_name=ENST00000446299;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000446299.6;alignment_mode=transMap;normalized_transcript_id=ENST00000446299.6;transcript_score=250.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001750;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001750;transcript_name=HG003_chrY_T0001750;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001750:1;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22984037	22985836	.	+	.	source_transcript=ENST00000446299.6;source_transcript_name=ENST00000446299;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000446299.6;alignment_mode=transMap;normalized_transcript_id=ENST00000446299.6;transcript_score=250.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001750;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001750;transcript_name=HG003_chrY_T0001750;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001750:1;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22985837	22985922	.	+	.	source_transcript=ENST00000446299.6;source_transcript_name=ENST00000446299;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000446299.6;alignment_mode=transMap;normalized_transcript_id=ENST00000446299.6;transcript_score=250.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001750;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001750;transcript_name=HG003_chrY_T0001750;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001750:2;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22985923	22986042	.	+	.	source_transcript=ENST00000446299.6;source_transcript_name=ENST00000446299;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000446299.6;alignment_mode=transMap;normalized_transcript_id=ENST00000446299.6;transcript_score=250.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001750;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001750;transcript_name=HG003_chrY_T0001750;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001750:2;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22986043	22986239	.	+	.	source_transcript=ENST00000446299.6;source_transcript_name=ENST00000446299;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000446299.6;alignment_mode=transMap;normalized_transcript_id=ENST00000446299.6;transcript_score=250.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001750;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001750;transcript_name=HG003_chrY_T0001750;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001750:3;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22986240	22986783	.	+	.	source_transcript=ENST00000446299.6;source_transcript_name=ENST00000446299;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000446299.6;alignment_mode=transMap;normalized_transcript_id=ENST00000446299.6;transcript_score=250.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001750;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001750;transcript_name=HG003_chrY_T0001750;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001750:3;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22986784	22986901	.	+	.	source_transcript=ENST00000446299.6;source_transcript_name=ENST00000446299;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000446299.6;alignment_mode=transMap;normalized_transcript_id=ENST00000446299.6;transcript_score=250.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001750;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001750;transcript_name=HG003_chrY_T0001750;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001750:4;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22986902	22987416	.	+	.	source_transcript=ENST00000446299.6;source_transcript_name=ENST00000446299;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000446299.6;alignment_mode=transMap;normalized_transcript_id=ENST00000446299.6;transcript_score=250.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001750;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001750;transcript_name=HG003_chrY_T0001750;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001750:4;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22987417	22988094	.	+	.	source_transcript=ENST00000446299.6;source_transcript_name=ENST00000446299;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000446299.6;alignment_mode=transMap;normalized_transcript_id=ENST00000446299.6;transcript_score=250.931;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001750;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001750;transcript_name=HG003_chrY_T0001750;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001750:5;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22983917	22988974	1000	+	.	source_transcript=ENST00000439653.1;source_transcript_name=ENST00000439653;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439653.1;alignment_mode=transMap;normalized_transcript_id=ENST00000439653.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001751;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_G0000604;transcript_name=HG003_chrY_T0001751;gene_name=ENSG00000235059;ID=HG003_chrY_T0001751;Name=ENSG00000235059
HG003_chrY	CAT	exon	22983917	22984036	.	+	.	source_transcript=ENST00000439653.1;source_transcript_name=ENST00000439653;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439653.1;alignment_mode=transMap;normalized_transcript_id=ENST00000439653.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001751;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001751;transcript_name=HG003_chrY_T0001751;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001751:0;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22984037	22986783	.	+	.	source_transcript=ENST00000439653.1;source_transcript_name=ENST00000439653;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439653.1;alignment_mode=transMap;normalized_transcript_id=ENST00000439653.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001751;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001751;transcript_name=HG003_chrY_T0001751;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001751:0;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22986784	22986901	.	+	.	source_transcript=ENST00000439653.1;source_transcript_name=ENST00000439653;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439653.1;alignment_mode=transMap;normalized_transcript_id=ENST00000439653.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001751;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001751;transcript_name=HG003_chrY_T0001751;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001751:1;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22986902	22987416	.	+	.	source_transcript=ENST00000439653.1;source_transcript_name=ENST00000439653;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439653.1;alignment_mode=transMap;normalized_transcript_id=ENST00000439653.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001751;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001751;transcript_name=HG003_chrY_T0001751;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001751:1;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22987417	22987681	.	+	.	source_transcript=ENST00000439653.1;source_transcript_name=ENST00000439653;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439653.1;alignment_mode=transMap;normalized_transcript_id=ENST00000439653.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001751;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001751;transcript_name=HG003_chrY_T0001751;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001751:2;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22987682	22988732	.	+	.	source_transcript=ENST00000439653.1;source_transcript_name=ENST00000439653;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439653.1;alignment_mode=transMap;normalized_transcript_id=ENST00000439653.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001751;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001751;transcript_name=HG003_chrY_T0001751;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001751:2;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22988733	22988974	.	+	.	source_transcript=ENST00000439653.1;source_transcript_name=ENST00000439653;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000439653.1;alignment_mode=transMap;normalized_transcript_id=ENST00000439653.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001751;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001751;transcript_name=HG003_chrY_T0001751;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001751:3;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22986780	22988281	1000	+	.	source_transcript=ENST00000801163.1;source_transcript_name=ENST00000801163;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801163.1;alignment_mode=transMap;normalized_transcript_id=ENST00000801163.1;transcript_score=283.361;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001752;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_G0000604;transcript_name=HG003_chrY_T0001752;gene_name=ENSG00000235059;ID=HG003_chrY_T0001752;Name=ENSG00000235059
HG003_chrY	CAT	exon	22986780	22986901	.	+	.	source_transcript=ENST00000801163.1;source_transcript_name=ENST00000801163;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801163.1;alignment_mode=transMap;normalized_transcript_id=ENST00000801163.1;transcript_score=283.361;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001752;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001752;transcript_name=HG003_chrY_T0001752;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001752:0;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22986902	22987416	.	+	.	source_transcript=ENST00000801163.1;source_transcript_name=ENST00000801163;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801163.1;alignment_mode=transMap;normalized_transcript_id=ENST00000801163.1;transcript_score=283.361;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001752;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001752;transcript_name=HG003_chrY_T0001752;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001752:0;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22987417	22988281	.	+	.	source_transcript=ENST00000801163.1;source_transcript_name=ENST00000801163;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801163.1;alignment_mode=transMap;normalized_transcript_id=ENST00000801163.1;transcript_score=283.361;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001752;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001752;transcript_name=HG003_chrY_T0001752;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001752:1;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22987417	23018032	1000	+	.	source_transcript=ENST00000303728.6;source_transcript_name=ENST00000303728;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303728.6;alignment_mode=transMap;normalized_transcript_id=ENST00000303728.6;transcript_score=299.93399999999997;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001753;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_G0000604;transcript_name=HG003_chrY_T0001753;gene_name=ENSG00000235059;ID=HG003_chrY_T0001753;Name=ENSG00000235059
HG003_chrY	CAT	exon	22987417	22987681	.	+	.	source_transcript=ENST00000303728.6;source_transcript_name=ENST00000303728;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303728.6;alignment_mode=transMap;normalized_transcript_id=ENST00000303728.6;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001753;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001753;transcript_name=HG003_chrY_T0001753;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001753:0;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22987682	22993778	.	+	.	source_transcript=ENST00000303728.6;source_transcript_name=ENST00000303728;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303728.6;alignment_mode=transMap;normalized_transcript_id=ENST00000303728.6;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001753;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001753;transcript_name=HG003_chrY_T0001753;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001753:0;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22993779	22993867	.	+	.	source_transcript=ENST00000303728.6;source_transcript_name=ENST00000303728;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303728.6;alignment_mode=transMap;normalized_transcript_id=ENST00000303728.6;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001753;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001753;transcript_name=HG003_chrY_T0001753;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001753:1;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22993868	22993968	.	+	.	source_transcript=ENST00000303728.6;source_transcript_name=ENST00000303728;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303728.6;alignment_mode=transMap;normalized_transcript_id=ENST00000303728.6;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001753;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001753;transcript_name=HG003_chrY_T0001753;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001753:1;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22993969	22994055	.	+	.	source_transcript=ENST00000303728.6;source_transcript_name=ENST00000303728;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303728.6;alignment_mode=transMap;normalized_transcript_id=ENST00000303728.6;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001753;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001753;transcript_name=HG003_chrY_T0001753;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001753:2;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22994056	23004896	.	+	.	source_transcript=ENST00000303728.6;source_transcript_name=ENST00000303728;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303728.6;alignment_mode=transMap;normalized_transcript_id=ENST00000303728.6;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001753;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001753;transcript_name=HG003_chrY_T0001753;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001753:2;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23004897	23005017	.	+	.	source_transcript=ENST00000303728.6;source_transcript_name=ENST00000303728;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303728.6;alignment_mode=transMap;normalized_transcript_id=ENST00000303728.6;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001753;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001753;transcript_name=HG003_chrY_T0001753;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001753:3;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23005018	23007592	.	+	.	source_transcript=ENST00000303728.6;source_transcript_name=ENST00000303728;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303728.6;alignment_mode=transMap;normalized_transcript_id=ENST00000303728.6;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001753;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001753;transcript_name=HG003_chrY_T0001753;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001753:3;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23007593	23007708	.	+	.	source_transcript=ENST00000303728.6;source_transcript_name=ENST00000303728;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303728.6;alignment_mode=transMap;normalized_transcript_id=ENST00000303728.6;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001753;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001753;transcript_name=HG003_chrY_T0001753;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001753:4;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23007709	23017206	.	+	.	source_transcript=ENST00000303728.6;source_transcript_name=ENST00000303728;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303728.6;alignment_mode=transMap;normalized_transcript_id=ENST00000303728.6;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001753;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001753;transcript_name=HG003_chrY_T0001753;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001753:4;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23017207	23018032	.	+	.	source_transcript=ENST00000303728.6;source_transcript_name=ENST00000303728;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303728.6;alignment_mode=transMap;normalized_transcript_id=ENST00000303728.6;transcript_score=299.93399999999997;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001753;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001753;transcript_name=HG003_chrY_T0001753;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001753:5;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	22987417	23018032	1000	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_G0000604;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=HG003_chrY_T0001754;Name=ENSG00000235059
HG003_chrY	CAT	exon	22987417	22987681	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001754:0;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22987682	22993778	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001754:0;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22993779	22993867	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001754:1;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22993868	22993968	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001754:1;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	22993969	22994055	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001754:2;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	22994056	23004896	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001754:2;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23004897	23005017	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001754:3;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23005018	23007592	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001754:3;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23007593	23007708	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001754:4;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23007709	23016029	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001754:4;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23016030	23016144	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001754:5;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23016145	23017206	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=intron:HG003_chrY_T0001754:5;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23017207	23018032	.	+	.	source_transcript=ENST00000477123.2;source_transcript_name=ENST00000477123;source_gene=ENSG00000235059.7;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235059.7;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000477123.2;alignment_mode=transMap;normalized_transcript_id=ENST00000477123.2;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235059;transcript_id=HG003_chrY_T0001754;gene_id=HG003_chrY_G0000604;Parent=HG003_chrY_T0001754;transcript_name=HG003_chrY_T0001754;gene_name=ENSG00000235059;ID=exon:HG003_chrY_T0001754:6;Name=ENSG00000235059;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23020637	23020968	.	-	.	source_gene_common_name=ELOCP8;source_gene=ENSG00000234131.1;alternative_source_transcripts=ENST00000439309.1;gene_id=HG003_chrY_G0000605;gene_biotype=processed_pseudogene;gene_name=ELOCP8;gene_sources=liftoff;ID=HG003_chrY_G0000605;Name=ELOCP8
HG003_chrY	CAT	transcript	23020637	23020968	1000	-	.	source_transcript=ENST00000439309.1;source_transcript_name=ELOCP8-201;source_gene=ENSG00000234131.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234131.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000439309.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439309.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP8;alternative_source_transcripts=ENST00000439309.1;transcript_id=HG003_chrY_T0001755;gene_id=HG003_chrY_G0000605;Parent=HG003_chrY_G0000605;transcript_name=HG003_chrY_T0001755;gene_name=ELOCP8;ID=HG003_chrY_T0001755;Name=ELOCP8
HG003_chrY	CAT	exon	23020637	23020968	.	-	.	source_transcript=ENST00000439309.1;source_transcript_name=ELOCP8-201;source_gene=ENSG00000234131.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234131.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000439309.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439309.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP8;alternative_source_transcripts=ENST00000439309.1;transcript_id=HG003_chrY_T0001755;gene_id=HG003_chrY_G0000605;Parent=HG003_chrY_T0001755;transcript_name=HG003_chrY_T0001755;gene_name=ELOCP8;ID=exon:HG003_chrY_T0001755:0;Name=ELOCP8;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23024076	23025090	.	-	.	source_gene_common_name=CDY13P;source_gene=ENSG00000224873.1;alternative_source_transcripts=ENST00000445813.1;gene_id=HG003_chrY_G0000606;gene_biotype=unprocessed_pseudogene;gene_name=CDY13P;gene_sources=liftoff;ID=HG003_chrY_G0000606;Name=CDY13P
HG003_chrY	CAT	transcript	23024076	23025090	1000	-	.	source_transcript=ENST00000445813.1;source_transcript_name=CDY13P-201;source_gene=ENSG00000224873.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224873.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445813.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY13P;alternative_source_transcripts=ENST00000445813.1;transcript_id=HG003_chrY_T0001756;gene_id=HG003_chrY_G0000606;Parent=HG003_chrY_G0000606;transcript_name=HG003_chrY_T0001756;gene_name=CDY13P;ID=HG003_chrY_T0001756;Name=CDY13P
HG003_chrY	CAT	exon	23024076	23025090	.	-	.	source_transcript=ENST00000445813.1;source_transcript_name=CDY13P-201;source_gene=ENSG00000224873.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224873.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445813.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445813.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY13P;alternative_source_transcripts=ENST00000445813.1;transcript_id=HG003_chrY_T0001756;gene_id=HG003_chrY_G0000606;Parent=HG003_chrY_T0001756;transcript_name=HG003_chrY_T0001756;gene_name=CDY13P;ID=exon:HG003_chrY_T0001756:0;Name=CDY13P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23031675	23040033	.	+	.	source_gene_common_name=USP9YP24;source_gene=ENSG00000230814.1;alternative_source_transcripts=ENST00000434374.1;gene_id=HG003_chrY_G0000607;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP24;gene_sources=liftoff;ID=HG003_chrY_G0000607;Name=USP9YP24
HG003_chrY	CAT	transcript	23031675	23040033	1000	+	.	source_transcript=ENST00000434374.1;source_transcript_name=USP9YP24-201;source_gene=ENSG00000230814.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230814.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434374.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP24;alternative_source_transcripts=ENST00000434374.1;transcript_id=HG003_chrY_T0001757;gene_id=HG003_chrY_G0000607;Parent=HG003_chrY_G0000607;transcript_name=HG003_chrY_T0001757;gene_name=USP9YP24;ID=HG003_chrY_T0001757;Name=USP9YP24
HG003_chrY	CAT	exon	23031675	23031895	.	+	.	source_transcript=ENST00000434374.1;source_transcript_name=USP9YP24-201;source_gene=ENSG00000230814.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230814.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP24;alternative_source_transcripts=ENST00000434374.1;transcript_id=HG003_chrY_T0001757;gene_id=HG003_chrY_G0000607;Parent=HG003_chrY_T0001757;transcript_name=HG003_chrY_T0001757;gene_name=USP9YP24;ID=exon:HG003_chrY_T0001757:0;Name=USP9YP24;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23031896	23033697	.	+	.	source_transcript=ENST00000434374.1;source_transcript_name=USP9YP24-201;source_gene=ENSG00000230814.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230814.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP24;alternative_source_transcripts=ENST00000434374.1;transcript_id=HG003_chrY_T0001757;gene_id=HG003_chrY_G0000607;Parent=HG003_chrY_T0001757;transcript_name=HG003_chrY_T0001757;gene_name=USP9YP24;ID=intron:HG003_chrY_T0001757:0;Name=USP9YP24;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23033698	23033816	.	+	.	source_transcript=ENST00000434374.1;source_transcript_name=USP9YP24-201;source_gene=ENSG00000230814.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230814.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP24;alternative_source_transcripts=ENST00000434374.1;transcript_id=HG003_chrY_T0001757;gene_id=HG003_chrY_G0000607;Parent=HG003_chrY_T0001757;transcript_name=HG003_chrY_T0001757;gene_name=USP9YP24;ID=exon:HG003_chrY_T0001757:1;Name=USP9YP24;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23033817	23035602	.	+	.	source_transcript=ENST00000434374.1;source_transcript_name=USP9YP24-201;source_gene=ENSG00000230814.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230814.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP24;alternative_source_transcripts=ENST00000434374.1;transcript_id=HG003_chrY_T0001757;gene_id=HG003_chrY_G0000607;Parent=HG003_chrY_T0001757;transcript_name=HG003_chrY_T0001757;gene_name=USP9YP24;ID=intron:HG003_chrY_T0001757:1;Name=USP9YP24;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23035603	23035791	.	+	.	source_transcript=ENST00000434374.1;source_transcript_name=USP9YP24-201;source_gene=ENSG00000230814.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230814.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP24;alternative_source_transcripts=ENST00000434374.1;transcript_id=HG003_chrY_T0001757;gene_id=HG003_chrY_G0000607;Parent=HG003_chrY_T0001757;transcript_name=HG003_chrY_T0001757;gene_name=USP9YP24;ID=exon:HG003_chrY_T0001757:2;Name=USP9YP24;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23035792	23038149	.	+	.	source_transcript=ENST00000434374.1;source_transcript_name=USP9YP24-201;source_gene=ENSG00000230814.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230814.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP24;alternative_source_transcripts=ENST00000434374.1;transcript_id=HG003_chrY_T0001757;gene_id=HG003_chrY_G0000607;Parent=HG003_chrY_T0001757;transcript_name=HG003_chrY_T0001757;gene_name=USP9YP24;ID=intron:HG003_chrY_T0001757:2;Name=USP9YP24;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23038150	23038278	.	+	.	source_transcript=ENST00000434374.1;source_transcript_name=USP9YP24-201;source_gene=ENSG00000230814.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230814.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP24;alternative_source_transcripts=ENST00000434374.1;transcript_id=HG003_chrY_T0001757;gene_id=HG003_chrY_G0000607;Parent=HG003_chrY_T0001757;transcript_name=HG003_chrY_T0001757;gene_name=USP9YP24;ID=exon:HG003_chrY_T0001757:3;Name=USP9YP24;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23038279	23039994	.	+	.	source_transcript=ENST00000434374.1;source_transcript_name=USP9YP24-201;source_gene=ENSG00000230814.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230814.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP24;alternative_source_transcripts=ENST00000434374.1;transcript_id=HG003_chrY_T0001757;gene_id=HG003_chrY_G0000607;Parent=HG003_chrY_T0001757;transcript_name=HG003_chrY_T0001757;gene_name=USP9YP24;ID=intron:HG003_chrY_T0001757:3;Name=USP9YP24;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23039995	23040033	.	+	.	source_transcript=ENST00000434374.1;source_transcript_name=USP9YP24-201;source_gene=ENSG00000230814.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230814.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434374.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434374.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP24;alternative_source_transcripts=ENST00000434374.1;transcript_id=HG003_chrY_T0001757;gene_id=HG003_chrY_G0000607;Parent=HG003_chrY_T0001757;transcript_name=HG003_chrY_T0001757;gene_name=USP9YP24;ID=exon:HG003_chrY_T0001757:4;Name=USP9YP24;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23040313	23088659	.	+	.	source_gene_common_name=ENSG00000300637;source_gene=ENSG00000300637.1;gene_id=HG003_chrY_G0000608;gene_biotype=lncRNA;gene_name=ENSG00000300637;gene_sources=liftoff;ID=HG003_chrY_G0000608;Name=ENSG00000300637
HG003_chrY	CAT	transcript	23040313	23081160	1000	+	.	source_transcript=ENST00000773078.1;source_transcript_name=ENST00000773078;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773078.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001758;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_G0000608;transcript_name=HG003_chrY_T0001758;gene_name=ENSG00000300637;ID=HG003_chrY_T0001758;Name=ENSG00000300637
HG003_chrY	CAT	exon	23040313	23040634	.	+	.	source_transcript=ENST00000773078.1;source_transcript_name=ENST00000773078;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773078.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001758;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_T0001758;transcript_name=HG003_chrY_T0001758;gene_name=ENSG00000300637;ID=exon:HG003_chrY_T0001758:0;Name=ENSG00000300637;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23040635	23045199	.	+	.	source_transcript=ENST00000773078.1;source_transcript_name=ENST00000773078;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773078.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001758;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_T0001758;transcript_name=HG003_chrY_T0001758;gene_name=ENSG00000300637;ID=intron:HG003_chrY_T0001758:0;Name=ENSG00000300637;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23045200	23045361	.	+	.	source_transcript=ENST00000773078.1;source_transcript_name=ENST00000773078;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773078.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001758;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_T0001758;transcript_name=HG003_chrY_T0001758;gene_name=ENSG00000300637;ID=exon:HG003_chrY_T0001758:1;Name=ENSG00000300637;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23045362	23080531	.	+	.	source_transcript=ENST00000773078.1;source_transcript_name=ENST00000773078;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773078.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001758;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_T0001758;transcript_name=HG003_chrY_T0001758;gene_name=ENSG00000300637;ID=intron:HG003_chrY_T0001758:1;Name=ENSG00000300637;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23080532	23081160	.	+	.	source_transcript=ENST00000773078.1;source_transcript_name=ENST00000773078;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773078.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773078.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001758;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_T0001758;transcript_name=HG003_chrY_T0001758;gene_name=ENSG00000300637;ID=exon:HG003_chrY_T0001758:2;Name=ENSG00000300637;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23040373	23088659	1000	+	.	source_transcript=ENST00000773077.1;source_transcript_name=ENST00000773077;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773077.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773077.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001759;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_G0000608;transcript_name=HG003_chrY_T0001759;gene_name=ENSG00000300637;ID=HG003_chrY_T0001759;Name=ENSG00000300637
HG003_chrY	CAT	exon	23040373	23040634	.	+	.	source_transcript=ENST00000773077.1;source_transcript_name=ENST00000773077;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773077.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773077.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001759;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_T0001759;transcript_name=HG003_chrY_T0001759;gene_name=ENSG00000300637;ID=exon:HG003_chrY_T0001759:0;Name=ENSG00000300637;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23040635	23045199	.	+	.	source_transcript=ENST00000773077.1;source_transcript_name=ENST00000773077;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773077.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773077.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001759;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_T0001759;transcript_name=HG003_chrY_T0001759;gene_name=ENSG00000300637;ID=intron:HG003_chrY_T0001759:0;Name=ENSG00000300637;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23045200	23045361	.	+	.	source_transcript=ENST00000773077.1;source_transcript_name=ENST00000773077;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773077.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773077.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001759;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_T0001759;transcript_name=HG003_chrY_T0001759;gene_name=ENSG00000300637;ID=exon:HG003_chrY_T0001759:1;Name=ENSG00000300637;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23045362	23080531	.	+	.	source_transcript=ENST00000773077.1;source_transcript_name=ENST00000773077;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773077.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773077.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001759;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_T0001759;transcript_name=HG003_chrY_T0001759;gene_name=ENSG00000300637;ID=intron:HG003_chrY_T0001759:1;Name=ENSG00000300637;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23080532	23080834	.	+	.	source_transcript=ENST00000773077.1;source_transcript_name=ENST00000773077;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773077.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773077.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001759;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_T0001759;transcript_name=HG003_chrY_T0001759;gene_name=ENSG00000300637;ID=exon:HG003_chrY_T0001759:2;Name=ENSG00000300637;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23080835	23088384	.	+	.	source_transcript=ENST00000773077.1;source_transcript_name=ENST00000773077;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773077.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773077.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001759;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_T0001759;transcript_name=HG003_chrY_T0001759;gene_name=ENSG00000300637;ID=intron:HG003_chrY_T0001759:2;Name=ENSG00000300637;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23088385	23088659	.	+	.	source_transcript=ENST00000773077.1;source_transcript_name=ENST00000773077;source_gene=ENSG00000300637.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000300637.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000773077.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000773077.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000300637;transcript_id=HG003_chrY_T0001759;gene_id=HG003_chrY_G0000608;Parent=HG003_chrY_T0001759;transcript_name=HG003_chrY_T0001759;gene_name=ENSG00000300637;ID=exon:HG003_chrY_T0001759:3;Name=ENSG00000300637;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23040441	23041243	.	+	.	source_gene_common_name=HSFY7P;source_gene=ENSG00000228571.1;gene_id=HG003_chrY_G0000609;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=HSFY7P;gene_sources=liftoff;ID=HG003_chrY_G0000609;Name=HSFY7P
HG003_chrY	CAT	transcript	23040441	23041243	1000	+	.	source_transcript=ENST00000432672.1;source_transcript_name=HSFY7P-201;source_gene=ENSG00000228571.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000228571.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432672.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432672.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY7P;transcript_id=HG003_chrY_T0001760;gene_id=HG003_chrY_G0000609;Parent=HG003_chrY_G0000609;transcript_name=HG003_chrY_T0001760;gene_name=HSFY7P;ID=HG003_chrY_T0001760;Name=HSFY7P
HG003_chrY	CAT	exon	23040441	23040599	.	+	.	source_transcript=ENST00000432672.1;source_transcript_name=HSFY7P-201;source_gene=ENSG00000228571.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000228571.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432672.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432672.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY7P;transcript_id=HG003_chrY_T0001760;gene_id=HG003_chrY_G0000609;Parent=HG003_chrY_T0001760;transcript_name=HG003_chrY_T0001760;gene_name=HSFY7P;ID=exon:HG003_chrY_T0001760:0;Name=HSFY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23040600	23041084	.	+	.	source_transcript=ENST00000432672.1;source_transcript_name=HSFY7P-201;source_gene=ENSG00000228571.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000228571.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432672.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432672.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY7P;transcript_id=HG003_chrY_T0001760;gene_id=HG003_chrY_G0000609;Parent=HG003_chrY_T0001760;transcript_name=HG003_chrY_T0001760;gene_name=HSFY7P;ID=intron:HG003_chrY_T0001760:0;Name=HSFY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23041085	23041243	.	+	.	source_transcript=ENST00000432672.1;source_transcript_name=HSFY7P-201;source_gene=ENSG00000228571.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000228571.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000432672.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432672.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY7P;transcript_id=HG003_chrY_T0001760;gene_id=HG003_chrY_G0000609;Parent=HG003_chrY_T0001760;transcript_name=HG003_chrY_T0001760;gene_name=HSFY7P;ID=exon:HG003_chrY_T0001760:1;Name=HSFY7P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23058299	23061467	.	-	.	source_gene_common_name=ENSG00000295422;source_gene=ENSG00000295422.1;gene_id=HG003_chrY_G0000610;gene_biotype=lncRNA;gene_name=ENSG00000295422;gene_sources=liftoff;ID=HG003_chrY_G0000610;Name=ENSG00000295422
HG003_chrY	CAT	transcript	23058299	23061467	1000	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;transcript_id=HG003_chrY_T0001761;gene_id=HG003_chrY_G0000610;Parent=HG003_chrY_G0000610;transcript_name=HG003_chrY_T0001761;gene_name=ENSG00000295422;ID=HG003_chrY_T0001761;Name=ENSG00000295422
HG003_chrY	CAT	exon	23058299	23059643	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;transcript_id=HG003_chrY_T0001761;gene_id=HG003_chrY_G0000610;Parent=HG003_chrY_T0001761;transcript_name=HG003_chrY_T0001761;gene_name=ENSG00000295422;ID=exon:HG003_chrY_T0001761:0;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23059644	23061178	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;transcript_id=HG003_chrY_T0001761;gene_id=HG003_chrY_G0000610;Parent=HG003_chrY_T0001761;transcript_name=HG003_chrY_T0001761;gene_name=ENSG00000295422;ID=intron:HG003_chrY_T0001761:0;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23061179	23061239	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;transcript_id=HG003_chrY_T0001761;gene_id=HG003_chrY_G0000610;Parent=HG003_chrY_T0001761;transcript_name=HG003_chrY_T0001761;gene_name=ENSG00000295422;ID=exon:HG003_chrY_T0001761:1;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23061240	23061356	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;transcript_id=HG003_chrY_T0001761;gene_id=HG003_chrY_G0000610;Parent=HG003_chrY_T0001761;transcript_name=HG003_chrY_T0001761;gene_name=ENSG00000295422;ID=intron:HG003_chrY_T0001761:1;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23061357	23061467	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;transcript_id=HG003_chrY_T0001761;gene_id=HG003_chrY_G0000610;Parent=HG003_chrY_T0001761;transcript_name=HG003_chrY_T0001761;gene_name=ENSG00000295422;ID=exon:HG003_chrY_T0001761:2;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23084389	23117477	.	-	.	source_gene_common_name=OFD1P9Y;source_gene=ENSG00000230476.1;alternative_source_transcripts=ENST00000417699.1;gene_id=HG003_chrY_G0000611;gene_biotype=unprocessed_pseudogene;gene_name=OFD1P9Y;gene_sources=liftoff;ID=HG003_chrY_G0000611;Name=OFD1P9Y
HG003_chrY	CAT	transcript	23084389	23117477	1000	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_G0000611;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=HG003_chrY_T0001762;Name=OFD1P9Y
HG003_chrY	CAT	exon	23084389	23084482	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=exon:HG003_chrY_T0001762:0;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23084483	23084780	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=intron:HG003_chrY_T0001762:0;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23084781	23084847	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=exon:HG003_chrY_T0001762:1;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23084848	23086043	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=intron:HG003_chrY_T0001762:1;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23086044	23086198	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=exon:HG003_chrY_T0001762:2;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23086199	23092831	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=intron:HG003_chrY_T0001762:2;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23092832	23092932	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=exon:HG003_chrY_T0001762:3;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23092933	23112269	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=intron:HG003_chrY_T0001762:3;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23112270	23112380	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=exon:HG003_chrY_T0001762:4;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23112381	23112753	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=intron:HG003_chrY_T0001762:4;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23112754	23113369	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=exon:HG003_chrY_T0001762:5;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23113370	23115086	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=intron:HG003_chrY_T0001762:5;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23115087	23115196	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=exon:HG003_chrY_T0001762:6;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23115197	23115730	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=intron:HG003_chrY_T0001762:6;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23115731	23115860	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=exon:HG003_chrY_T0001762:7;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23115861	23117370	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=intron:HG003_chrY_T0001762:7;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23117371	23117477	.	-	.	source_transcript=ENST00000417699.1;source_transcript_name=OFD1P9Y-201;source_gene=ENSG00000230476.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230476.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417699.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P9Y;alternative_source_transcripts=ENST00000417699.1;transcript_id=HG003_chrY_T0001762;gene_id=HG003_chrY_G0000611;Parent=HG003_chrY_T0001762;transcript_name=HG003_chrY_T0001762;gene_name=OFD1P9Y;ID=exon:HG003_chrY_T0001762:8;Name=OFD1P9Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23138980	23144436	.	+	.	source_gene_common_name=ENSG00000305658;source_gene=ENSG00000305658.1;gene_id=HG003_chrY_G0000612;gene_biotype=lncRNA;gene_name=ENSG00000305658;gene_sources=liftoff;ID=HG003_chrY_G0000612;Name=ENSG00000305658
HG003_chrY	CAT	transcript	23138980	23144436	1000	+	.	source_transcript=ENST00000812264.1;source_transcript_name=ENST00000812264;source_gene=ENSG00000305658.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305658.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812264.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305658;transcript_id=HG003_chrY_T0001763;gene_id=HG003_chrY_G0000612;Parent=HG003_chrY_G0000612;transcript_name=HG003_chrY_T0001763;gene_name=ENSG00000305658;ID=HG003_chrY_T0001763;Name=ENSG00000305658
HG003_chrY	CAT	exon	23138980	23139318	.	+	.	source_transcript=ENST00000812264.1;source_transcript_name=ENST00000812264;source_gene=ENSG00000305658.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305658.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812264.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305658;transcript_id=HG003_chrY_T0001763;gene_id=HG003_chrY_G0000612;Parent=HG003_chrY_T0001763;transcript_name=HG003_chrY_T0001763;gene_name=ENSG00000305658;ID=exon:HG003_chrY_T0001763:0;Name=ENSG00000305658;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23139319	23141236	.	+	.	source_transcript=ENST00000812264.1;source_transcript_name=ENST00000812264;source_gene=ENSG00000305658.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305658.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812264.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305658;transcript_id=HG003_chrY_T0001763;gene_id=HG003_chrY_G0000612;Parent=HG003_chrY_T0001763;transcript_name=HG003_chrY_T0001763;gene_name=ENSG00000305658;ID=intron:HG003_chrY_T0001763:0;Name=ENSG00000305658;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23141237	23141370	.	+	.	source_transcript=ENST00000812264.1;source_transcript_name=ENST00000812264;source_gene=ENSG00000305658.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305658.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812264.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305658;transcript_id=HG003_chrY_T0001763;gene_id=HG003_chrY_G0000612;Parent=HG003_chrY_T0001763;transcript_name=HG003_chrY_T0001763;gene_name=ENSG00000305658;ID=exon:HG003_chrY_T0001763:1;Name=ENSG00000305658;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23141371	23143239	.	+	.	source_transcript=ENST00000812264.1;source_transcript_name=ENST00000812264;source_gene=ENSG00000305658.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305658.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812264.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305658;transcript_id=HG003_chrY_T0001763;gene_id=HG003_chrY_G0000612;Parent=HG003_chrY_T0001763;transcript_name=HG003_chrY_T0001763;gene_name=ENSG00000305658;ID=intron:HG003_chrY_T0001763:1;Name=ENSG00000305658;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23143240	23143366	.	+	.	source_transcript=ENST00000812264.1;source_transcript_name=ENST00000812264;source_gene=ENSG00000305658.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305658.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812264.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305658;transcript_id=HG003_chrY_T0001763;gene_id=HG003_chrY_G0000612;Parent=HG003_chrY_T0001763;transcript_name=HG003_chrY_T0001763;gene_name=ENSG00000305658;ID=exon:HG003_chrY_T0001763:2;Name=ENSG00000305658;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23143367	23143730	.	+	.	source_transcript=ENST00000812264.1;source_transcript_name=ENST00000812264;source_gene=ENSG00000305658.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305658.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812264.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305658;transcript_id=HG003_chrY_T0001763;gene_id=HG003_chrY_G0000612;Parent=HG003_chrY_T0001763;transcript_name=HG003_chrY_T0001763;gene_name=ENSG00000305658;ID=intron:HG003_chrY_T0001763:2;Name=ENSG00000305658;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23143731	23144436	.	+	.	source_transcript=ENST00000812264.1;source_transcript_name=ENST00000812264;source_gene=ENSG00000305658.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305658.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812264.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305658;transcript_id=HG003_chrY_T0001763;gene_id=HG003_chrY_G0000612;Parent=HG003_chrY_T0001763;transcript_name=HG003_chrY_T0001763;gene_name=ENSG00000305658;ID=exon:HG003_chrY_T0001763:3;Name=ENSG00000305658;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23149439	23149735	.	-	.	source_gene_common_name=ENSG00000273589;source_gene=ENSG00000273589.1;alternative_source_transcripts=ENST00000612840.1;gene_id=HG003_chrY_G0000613;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000273589;gene_sources=liftoff;ID=HG003_chrY_G0000613;Name=ENSG00000273589
HG003_chrY	CAT	transcript	23149439	23149735	1000	-	.	source_transcript=ENST00000612840.1;source_transcript_name=ENST00000612840;source_gene=ENSG00000273589.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000273589.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000612840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000612840.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273589;alternative_source_transcripts=ENST00000612840.1;transcript_id=HG003_chrY_T0001764;gene_id=HG003_chrY_G0000613;Parent=HG003_chrY_G0000613;transcript_name=HG003_chrY_T0001764;gene_name=ENSG00000273589;ID=HG003_chrY_T0001764;Name=ENSG00000273589
HG003_chrY	CAT	exon	23149439	23149735	.	-	.	source_transcript=ENST00000612840.1;source_transcript_name=ENST00000612840;source_gene=ENSG00000273589.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000273589.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000612840.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000612840.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000273589;alternative_source_transcripts=ENST00000612840.1;transcript_id=HG003_chrY_T0001764;gene_id=HG003_chrY_G0000613;Parent=HG003_chrY_T0001764;transcript_name=HG003_chrY_T0001764;gene_name=ENSG00000273589;ID=exon:HG003_chrY_T0001764:0;Name=ENSG00000273589;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23150647	23159130	.	+	.	source_gene_common_name=ENSG00000290348;source_gene=ENSG00000290348.2;gene_id=HG003_chrY_G0000614;gene_biotype=lncRNA;gene_name=ENSG00000290348;gene_sources=liftoff;ID=HG003_chrY_G0000614;Name=ENSG00000290348
HG003_chrY	CAT	transcript	23150647	23159130	1000	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_G0000614;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=HG003_chrY_T0001765;Name=ENSG00000290348
HG003_chrY	CAT	exon	23150647	23150800	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001765:0;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23150801	23151554	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=intron:HG003_chrY_T0001765:0;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23151555	23151634	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001765:1;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23151635	23152648	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=intron:HG003_chrY_T0001765:1;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23152649	23152761	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001765:2;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23152762	23153214	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=intron:HG003_chrY_T0001765:2;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23153215	23153318	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001765:3;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23153319	23156026	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=intron:HG003_chrY_T0001765:3;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23156027	23156204	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001765:4;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23156205	23158139	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=intron:HG003_chrY_T0001765:4;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23158140	23158292	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001765:5;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23158293	23158870	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=intron:HG003_chrY_T0001765:5;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23158871	23159130	.	+	.	source_transcript=ENST00000400578.3;source_transcript_name=ENST00000400578;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400578.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400578.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001765;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001765;transcript_name=HG003_chrY_T0001765;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001765:6;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23150679	23159130	1000	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_G0000614;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=HG003_chrY_T0001766;Name=ENSG00000290348
HG003_chrY	CAT	exon	23150679	23150800	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001766:0;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23150801	23151451	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=intron:HG003_chrY_T0001766:0;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23151452	23151634	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001766:1;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23151635	23152648	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=intron:HG003_chrY_T0001766:1;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23152649	23152761	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001766:2;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23152762	23153214	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=intron:HG003_chrY_T0001766:2;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23153215	23153318	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001766:3;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23153319	23156026	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=intron:HG003_chrY_T0001766:3;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23156027	23156204	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001766:4;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23156205	23158139	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=intron:HG003_chrY_T0001766:4;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23158140	23158292	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001766:5;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23158293	23158870	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=intron:HG003_chrY_T0001766:5;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23158871	23159130	.	+	.	source_transcript=ENST00000726065.1;source_transcript_name=ENST00000726065;source_gene=ENSG00000290348.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290348.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000726065.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000726065.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000290348;transcript_id=HG003_chrY_T0001766;gene_id=HG003_chrY_G0000614;Parent=HG003_chrY_T0001766;transcript_name=HG003_chrY_T0001766;gene_name=ENSG00000290348;ID=exon:HG003_chrY_T0001766:6;Name=ENSG00000290348;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23152653	23162286	.	+	.	source_gene_common_name=RBMY2BP;source_gene=ENSG00000224657.10;gene_id=HG003_chrY_G0000615;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RBMY2BP;gene_sources=liftoff;ID=HG003_chrY_G0000615;Name=RBMY2BP
HG003_chrY	CAT	transcript	23152653	23162286	1000	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_G0000615;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=HG003_chrY_T0001767;Name=RBMY2BP
HG003_chrY	CAT	exon	23152653	23152761	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=exon:HG003_chrY_T0001767:0;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23152762	23153214	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=intron:HG003_chrY_T0001767:0;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23153215	23153318	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=exon:HG003_chrY_T0001767:1;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23153319	23156026	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=intron:HG003_chrY_T0001767:1;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23156027	23156204	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=exon:HG003_chrY_T0001767:2;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23156205	23158139	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=intron:HG003_chrY_T0001767:2;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23158140	23158292	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=exon:HG003_chrY_T0001767:3;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23158293	23160299	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=intron:HG003_chrY_T0001767:3;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23160300	23160414	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=exon:HG003_chrY_T0001767:4;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23160415	23161283	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=intron:HG003_chrY_T0001767:4;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23161284	23161394	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=exon:HG003_chrY_T0001767:5;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23161395	23161476	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=intron:HG003_chrY_T0001767:5;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23161477	23161564	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=exon:HG003_chrY_T0001767:6;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23161565	23161988	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=intron:HG003_chrY_T0001767:6;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23161989	23162286	.	+	.	source_transcript=ENST00000451071.5;source_transcript_name=RBMY2BP-201;source_gene=ENSG00000224657.10;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000224657.10;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000451071.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000451071.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2BP;transcript_id=HG003_chrY_T0001767;gene_id=HG003_chrY_G0000615;Parent=HG003_chrY_T0001767;transcript_name=HG003_chrY_T0001767;gene_name=RBMY2BP;ID=exon:HG003_chrY_T0001767:7;Name=RBMY2BP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23174032	23176275	.	-	.	source_gene_common_name=ENSG00000224917;source_gene=ENSG00000224917.1;alternative_source_transcripts=ENST00000434179.1;gene_id=HG003_chrY_G0000616;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000224917;gene_sources=liftoff;ID=HG003_chrY_G0000616;Name=ENSG00000224917
HG003_chrY	CAT	transcript	23174032	23176275	1000	-	.	source_transcript=ENST00000434179.1;source_transcript_name=ENST00000434179;source_gene=ENSG00000224917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434179.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224917;alternative_source_transcripts=ENST00000434179.1;transcript_id=HG003_chrY_T0001768;gene_id=HG003_chrY_G0000616;Parent=HG003_chrY_G0000616;transcript_name=HG003_chrY_T0001768;gene_name=ENSG00000224917;ID=HG003_chrY_T0001768;Name=ENSG00000224917
HG003_chrY	CAT	exon	23174032	23174105	.	-	.	source_transcript=ENST00000434179.1;source_transcript_name=ENST00000434179;source_gene=ENSG00000224917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434179.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224917;alternative_source_transcripts=ENST00000434179.1;transcript_id=HG003_chrY_T0001768;gene_id=HG003_chrY_G0000616;Parent=HG003_chrY_T0001768;transcript_name=HG003_chrY_T0001768;gene_name=ENSG00000224917;ID=exon:HG003_chrY_T0001768:0;Name=ENSG00000224917;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23174106	23174226	.	-	.	source_transcript=ENST00000434179.1;source_transcript_name=ENST00000434179;source_gene=ENSG00000224917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434179.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224917;alternative_source_transcripts=ENST00000434179.1;transcript_id=HG003_chrY_T0001768;gene_id=HG003_chrY_G0000616;Parent=HG003_chrY_T0001768;transcript_name=HG003_chrY_T0001768;gene_name=ENSG00000224917;ID=intron:HG003_chrY_T0001768:0;Name=ENSG00000224917;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23174227	23174286	.	-	.	source_transcript=ENST00000434179.1;source_transcript_name=ENST00000434179;source_gene=ENSG00000224917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434179.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224917;alternative_source_transcripts=ENST00000434179.1;transcript_id=HG003_chrY_T0001768;gene_id=HG003_chrY_G0000616;Parent=HG003_chrY_T0001768;transcript_name=HG003_chrY_T0001768;gene_name=ENSG00000224917;ID=exon:HG003_chrY_T0001768:1;Name=ENSG00000224917;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23174287	23174462	.	-	.	source_transcript=ENST00000434179.1;source_transcript_name=ENST00000434179;source_gene=ENSG00000224917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434179.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224917;alternative_source_transcripts=ENST00000434179.1;transcript_id=HG003_chrY_T0001768;gene_id=HG003_chrY_G0000616;Parent=HG003_chrY_T0001768;transcript_name=HG003_chrY_T0001768;gene_name=ENSG00000224917;ID=intron:HG003_chrY_T0001768:1;Name=ENSG00000224917;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23174463	23174571	.	-	.	source_transcript=ENST00000434179.1;source_transcript_name=ENST00000434179;source_gene=ENSG00000224917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434179.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224917;alternative_source_transcripts=ENST00000434179.1;transcript_id=HG003_chrY_T0001768;gene_id=HG003_chrY_G0000616;Parent=HG003_chrY_T0001768;transcript_name=HG003_chrY_T0001768;gene_name=ENSG00000224917;ID=exon:HG003_chrY_T0001768:2;Name=ENSG00000224917;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23174572	23174786	.	-	.	source_transcript=ENST00000434179.1;source_transcript_name=ENST00000434179;source_gene=ENSG00000224917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434179.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224917;alternative_source_transcripts=ENST00000434179.1;transcript_id=HG003_chrY_T0001768;gene_id=HG003_chrY_G0000616;Parent=HG003_chrY_T0001768;transcript_name=HG003_chrY_T0001768;gene_name=ENSG00000224917;ID=intron:HG003_chrY_T0001768:2;Name=ENSG00000224917;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23174787	23174841	.	-	.	source_transcript=ENST00000434179.1;source_transcript_name=ENST00000434179;source_gene=ENSG00000224917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434179.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224917;alternative_source_transcripts=ENST00000434179.1;transcript_id=HG003_chrY_T0001768;gene_id=HG003_chrY_G0000616;Parent=HG003_chrY_T0001768;transcript_name=HG003_chrY_T0001768;gene_name=ENSG00000224917;ID=exon:HG003_chrY_T0001768:3;Name=ENSG00000224917;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23174842	23175873	.	-	.	source_transcript=ENST00000434179.1;source_transcript_name=ENST00000434179;source_gene=ENSG00000224917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434179.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224917;alternative_source_transcripts=ENST00000434179.1;transcript_id=HG003_chrY_T0001768;gene_id=HG003_chrY_G0000616;Parent=HG003_chrY_T0001768;transcript_name=HG003_chrY_T0001768;gene_name=ENSG00000224917;ID=intron:HG003_chrY_T0001768:3;Name=ENSG00000224917;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23175874	23176275	.	-	.	source_transcript=ENST00000434179.1;source_transcript_name=ENST00000434179;source_gene=ENSG00000224917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434179.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000224917;alternative_source_transcripts=ENST00000434179.1;transcript_id=HG003_chrY_T0001768;gene_id=HG003_chrY_G0000616;Parent=HG003_chrY_T0001768;transcript_name=HG003_chrY_T0001768;gene_name=ENSG00000224917;ID=exon:HG003_chrY_T0001768:4;Name=ENSG00000224917;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23197348	23275558	.	-	.	source_gene_common_name=ENSG00000306918;source_gene=ENSG00000306918.1;gene_id=HG003_chrY_G0000617;gene_biotype=lncRNA;gene_name=ENSG00000306918;gene_sources=liftoff;ID=HG003_chrY_G0000617;Name=ENSG00000306918
HG003_chrY	CAT	transcript	23197348	23275542	1000	-	.	source_transcript=ENST00000821993.1;source_transcript_name=ENST00000821993;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821993.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001769;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_G0000617;transcript_name=HG003_chrY_T0001769;gene_name=ENSG00000306918;ID=HG003_chrY_T0001769;Name=ENSG00000306918
HG003_chrY	CAT	exon	23197348	23197630	.	-	.	source_transcript=ENST00000821993.1;source_transcript_name=ENST00000821993;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001769;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001769;transcript_name=HG003_chrY_T0001769;gene_name=ENSG00000306918;ID=exon:HG003_chrY_T0001769:0;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23197631	23199246	.	-	.	source_transcript=ENST00000821993.1;source_transcript_name=ENST00000821993;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001769;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001769;transcript_name=HG003_chrY_T0001769;gene_name=ENSG00000306918;ID=intron:HG003_chrY_T0001769:0;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23199247	23199290	.	-	.	source_transcript=ENST00000821993.1;source_transcript_name=ENST00000821993;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001769;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001769;transcript_name=HG003_chrY_T0001769;gene_name=ENSG00000306918;ID=exon:HG003_chrY_T0001769:1;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23199291	23263716	.	-	.	source_transcript=ENST00000821993.1;source_transcript_name=ENST00000821993;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001769;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001769;transcript_name=HG003_chrY_T0001769;gene_name=ENSG00000306918;ID=intron:HG003_chrY_T0001769:1;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23263717	23263824	.	-	.	source_transcript=ENST00000821993.1;source_transcript_name=ENST00000821993;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001769;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001769;transcript_name=HG003_chrY_T0001769;gene_name=ENSG00000306918;ID=exon:HG003_chrY_T0001769:2;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23263825	23266972	.	-	.	source_transcript=ENST00000821993.1;source_transcript_name=ENST00000821993;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001769;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001769;transcript_name=HG003_chrY_T0001769;gene_name=ENSG00000306918;ID=intron:HG003_chrY_T0001769:2;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23266973	23267061	.	-	.	source_transcript=ENST00000821993.1;source_transcript_name=ENST00000821993;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001769;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001769;transcript_name=HG003_chrY_T0001769;gene_name=ENSG00000306918;ID=exon:HG003_chrY_T0001769:3;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23267062	23275443	.	-	.	source_transcript=ENST00000821993.1;source_transcript_name=ENST00000821993;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001769;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001769;transcript_name=HG003_chrY_T0001769;gene_name=ENSG00000306918;ID=intron:HG003_chrY_T0001769:3;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23275444	23275542	.	-	.	source_transcript=ENST00000821993.1;source_transcript_name=ENST00000821993;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821993.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821993.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001769;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001769;transcript_name=HG003_chrY_T0001769;gene_name=ENSG00000306918;ID=exon:HG003_chrY_T0001769:4;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23232532	23275540	1000	-	.	source_transcript=ENST00000821995.1;source_transcript_name=ENST00000821995;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821995.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001770;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_G0000617;transcript_name=HG003_chrY_T0001770;gene_name=ENSG00000306918;ID=HG003_chrY_T0001770;Name=ENSG00000306918
HG003_chrY	CAT	exon	23232532	23232928	.	-	.	source_transcript=ENST00000821995.1;source_transcript_name=ENST00000821995;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001770;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001770;transcript_name=HG003_chrY_T0001770;gene_name=ENSG00000306918;ID=exon:HG003_chrY_T0001770:0;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23232929	23263716	.	-	.	source_transcript=ENST00000821995.1;source_transcript_name=ENST00000821995;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001770;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001770;transcript_name=HG003_chrY_T0001770;gene_name=ENSG00000306918;ID=intron:HG003_chrY_T0001770:0;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23263717	23263824	.	-	.	source_transcript=ENST00000821995.1;source_transcript_name=ENST00000821995;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001770;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001770;transcript_name=HG003_chrY_T0001770;gene_name=ENSG00000306918;ID=exon:HG003_chrY_T0001770:1;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23263825	23266972	.	-	.	source_transcript=ENST00000821995.1;source_transcript_name=ENST00000821995;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001770;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001770;transcript_name=HG003_chrY_T0001770;gene_name=ENSG00000306918;ID=intron:HG003_chrY_T0001770:1;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23266973	23267061	.	-	.	source_transcript=ENST00000821995.1;source_transcript_name=ENST00000821995;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001770;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001770;transcript_name=HG003_chrY_T0001770;gene_name=ENSG00000306918;ID=exon:HG003_chrY_T0001770:2;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23267062	23275443	.	-	.	source_transcript=ENST00000821995.1;source_transcript_name=ENST00000821995;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001770;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001770;transcript_name=HG003_chrY_T0001770;gene_name=ENSG00000306918;ID=intron:HG003_chrY_T0001770:2;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23275444	23275540	.	-	.	source_transcript=ENST00000821995.1;source_transcript_name=ENST00000821995;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001770;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001770;transcript_name=HG003_chrY_T0001770;gene_name=ENSG00000306918;ID=exon:HG003_chrY_T0001770:3;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23232532	23275558	1000	-	.	source_transcript=ENST00000821994.1;source_transcript_name=ENST00000821994;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821994.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001771;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_G0000617;transcript_name=HG003_chrY_T0001771;gene_name=ENSG00000306918;ID=HG003_chrY_T0001771;Name=ENSG00000306918
HG003_chrY	CAT	exon	23232532	23232928	.	-	.	source_transcript=ENST00000821994.1;source_transcript_name=ENST00000821994;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821994.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001771;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001771;transcript_name=HG003_chrY_T0001771;gene_name=ENSG00000306918;ID=exon:HG003_chrY_T0001771:0;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23232929	23263716	.	-	.	source_transcript=ENST00000821994.1;source_transcript_name=ENST00000821994;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821994.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001771;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001771;transcript_name=HG003_chrY_T0001771;gene_name=ENSG00000306918;ID=intron:HG003_chrY_T0001771:0;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23263717	23263824	.	-	.	source_transcript=ENST00000821994.1;source_transcript_name=ENST00000821994;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821994.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001771;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001771;transcript_name=HG003_chrY_T0001771;gene_name=ENSG00000306918;ID=exon:HG003_chrY_T0001771:1;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23263825	23275443	.	-	.	source_transcript=ENST00000821994.1;source_transcript_name=ENST00000821994;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821994.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001771;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001771;transcript_name=HG003_chrY_T0001771;gene_name=ENSG00000306918;ID=intron:HG003_chrY_T0001771:1;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23275444	23275558	.	-	.	source_transcript=ENST00000821994.1;source_transcript_name=ENST00000821994;source_gene=ENSG00000306918.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306918.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000821994.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000821994.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306918;transcript_id=HG003_chrY_T0001771;gene_id=HG003_chrY_G0000617;Parent=HG003_chrY_T0001771;transcript_name=HG003_chrY_T0001771;gene_name=ENSG00000306918;ID=exon:HG003_chrY_T0001771:2;Name=ENSG00000306918;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23266258	23273202	.	-	.	source_gene_common_name=RBMY2WP;source_gene=ENSG00000230727.1;gene_id=HG003_chrY_G0000618;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RBMY2WP;gene_sources=liftoff;ID=HG003_chrY_G0000618;Name=RBMY2WP
HG003_chrY	CAT	transcript	23266258	23273202	1000	-	.	source_transcript=ENST00000424230.1;source_transcript_name=RBMY2WP-201;source_gene=ENSG00000230727.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230727.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000424230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424230.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2WP;transcript_id=HG003_chrY_T0001772;gene_id=HG003_chrY_G0000618;Parent=HG003_chrY_G0000618;transcript_name=HG003_chrY_T0001772;gene_name=RBMY2WP;ID=HG003_chrY_T0001772;Name=RBMY2WP
HG003_chrY	CAT	exon	23266258	23266559	.	-	.	source_transcript=ENST00000424230.1;source_transcript_name=RBMY2WP-201;source_gene=ENSG00000230727.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230727.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000424230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424230.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2WP;transcript_id=HG003_chrY_T0001772;gene_id=HG003_chrY_G0000618;Parent=HG003_chrY_T0001772;transcript_name=HG003_chrY_T0001772;gene_name=RBMY2WP;ID=exon:HG003_chrY_T0001772:0;Name=RBMY2WP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23266560	23266972	.	-	.	source_transcript=ENST00000424230.1;source_transcript_name=RBMY2WP-201;source_gene=ENSG00000230727.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230727.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000424230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424230.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2WP;transcript_id=HG003_chrY_T0001772;gene_id=HG003_chrY_G0000618;Parent=HG003_chrY_T0001772;transcript_name=HG003_chrY_T0001772;gene_name=RBMY2WP;ID=intron:HG003_chrY_T0001772:0;Name=RBMY2WP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23266973	23267061	.	-	.	source_transcript=ENST00000424230.1;source_transcript_name=RBMY2WP-201;source_gene=ENSG00000230727.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230727.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000424230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424230.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2WP;transcript_id=HG003_chrY_T0001772;gene_id=HG003_chrY_G0000618;Parent=HG003_chrY_T0001772;transcript_name=HG003_chrY_T0001772;gene_name=RBMY2WP;ID=exon:HG003_chrY_T0001772:1;Name=RBMY2WP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23267062	23267142	.	-	.	source_transcript=ENST00000424230.1;source_transcript_name=RBMY2WP-201;source_gene=ENSG00000230727.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230727.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000424230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424230.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2WP;transcript_id=HG003_chrY_T0001772;gene_id=HG003_chrY_G0000618;Parent=HG003_chrY_T0001772;transcript_name=HG003_chrY_T0001772;gene_name=RBMY2WP;ID=intron:HG003_chrY_T0001772:1;Name=RBMY2WP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23267143	23267253	.	-	.	source_transcript=ENST00000424230.1;source_transcript_name=RBMY2WP-201;source_gene=ENSG00000230727.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230727.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000424230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424230.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2WP;transcript_id=HG003_chrY_T0001772;gene_id=HG003_chrY_G0000618;Parent=HG003_chrY_T0001772;transcript_name=HG003_chrY_T0001772;gene_name=RBMY2WP;ID=exon:HG003_chrY_T0001772:2;Name=RBMY2WP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23267254	23270008	.	-	.	source_transcript=ENST00000424230.1;source_transcript_name=RBMY2WP-201;source_gene=ENSG00000230727.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230727.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000424230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424230.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2WP;transcript_id=HG003_chrY_T0001772;gene_id=HG003_chrY_G0000618;Parent=HG003_chrY_T0001772;transcript_name=HG003_chrY_T0001772;gene_name=RBMY2WP;ID=intron:HG003_chrY_T0001772:2;Name=RBMY2WP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23270009	23270185	.	-	.	source_transcript=ENST00000424230.1;source_transcript_name=RBMY2WP-201;source_gene=ENSG00000230727.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230727.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000424230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424230.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2WP;transcript_id=HG003_chrY_T0001772;gene_id=HG003_chrY_G0000618;Parent=HG003_chrY_T0001772;transcript_name=HG003_chrY_T0001772;gene_name=RBMY2WP;ID=exon:HG003_chrY_T0001772:3;Name=RBMY2WP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23270186	23272573	.	-	.	source_transcript=ENST00000424230.1;source_transcript_name=RBMY2WP-201;source_gene=ENSG00000230727.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230727.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000424230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424230.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2WP;transcript_id=HG003_chrY_T0001772;gene_id=HG003_chrY_G0000618;Parent=HG003_chrY_T0001772;transcript_name=HG003_chrY_T0001772;gene_name=RBMY2WP;ID=intron:HG003_chrY_T0001772:3;Name=RBMY2WP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23272574	23272675	.	-	.	source_transcript=ENST00000424230.1;source_transcript_name=RBMY2WP-201;source_gene=ENSG00000230727.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230727.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000424230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424230.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2WP;transcript_id=HG003_chrY_T0001772;gene_id=HG003_chrY_G0000618;Parent=HG003_chrY_T0001772;transcript_name=HG003_chrY_T0001772;gene_name=RBMY2WP;ID=exon:HG003_chrY_T0001772:4;Name=RBMY2WP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23272676	23273089	.	-	.	source_transcript=ENST00000424230.1;source_transcript_name=RBMY2WP-201;source_gene=ENSG00000230727.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230727.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000424230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424230.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2WP;transcript_id=HG003_chrY_T0001772;gene_id=HG003_chrY_G0000618;Parent=HG003_chrY_T0001772;transcript_name=HG003_chrY_T0001772;gene_name=RBMY2WP;ID=intron:HG003_chrY_T0001772:4;Name=RBMY2WP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23273090	23273202	.	-	.	source_transcript=ENST00000424230.1;source_transcript_name=RBMY2WP-201;source_gene=ENSG00000230727.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230727.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000424230.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424230.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2WP;transcript_id=HG003_chrY_T0001772;gene_id=HG003_chrY_G0000618;Parent=HG003_chrY_T0001772;transcript_name=HG003_chrY_T0001772;gene_name=RBMY2WP;ID=exon:HG003_chrY_T0001772:5;Name=RBMY2WP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23320531	23325621	.	-	.	source_gene_common_name=ENSG00000308317;source_gene=ENSG00000308317.1;gene_id=HG003_chrY_G0000619;gene_biotype=lncRNA;gene_name=ENSG00000308317;gene_sources=liftoff;ID=HG003_chrY_G0000619;Name=ENSG00000308317
HG003_chrY	CAT	transcript	23320531	23325621	1000	-	.	source_transcript=ENST00000833217.1;source_transcript_name=ENST00000833217;source_gene=ENSG00000308317.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308317.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000833217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000833217.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308317;transcript_id=HG003_chrY_T0001773;gene_id=HG003_chrY_G0000619;Parent=HG003_chrY_G0000619;transcript_name=HG003_chrY_T0001773;gene_name=ENSG00000308317;ID=HG003_chrY_T0001773;Name=ENSG00000308317
HG003_chrY	CAT	exon	23320531	23320872	.	-	.	source_transcript=ENST00000833217.1;source_transcript_name=ENST00000833217;source_gene=ENSG00000308317.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308317.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000833217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000833217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308317;transcript_id=HG003_chrY_T0001773;gene_id=HG003_chrY_G0000619;Parent=HG003_chrY_T0001773;transcript_name=HG003_chrY_T0001773;gene_name=ENSG00000308317;ID=exon:HG003_chrY_T0001773:0;Name=ENSG00000308317;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23320873	23325524	.	-	.	source_transcript=ENST00000833217.1;source_transcript_name=ENST00000833217;source_gene=ENSG00000308317.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308317.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000833217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000833217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308317;transcript_id=HG003_chrY_T0001773;gene_id=HG003_chrY_G0000619;Parent=HG003_chrY_T0001773;transcript_name=HG003_chrY_T0001773;gene_name=ENSG00000308317;ID=intron:HG003_chrY_T0001773:0;Name=ENSG00000308317;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23325525	23325621	.	-	.	source_transcript=ENST00000833217.1;source_transcript_name=ENST00000833217;source_gene=ENSG00000308317.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308317.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000833217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000833217.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308317;transcript_id=HG003_chrY_T0001773;gene_id=HG003_chrY_G0000619;Parent=HG003_chrY_T0001773;transcript_name=HG003_chrY_T0001773;gene_name=ENSG00000308317;ID=exon:HG003_chrY_T0001773:1;Name=ENSG00000308317;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23355012	23356143	.	+	.	source_gene_common_name=TTTY17A;source_gene=ENSG00000228240.1;alternative_source_transcripts=ENST00000416110.1;gene_id=HG003_chrY_G0000620;gene_biotype=lncRNA;gene_name=TTTY17A;gene_sources=liftoff;ID=HG003_chrY_G0000620;Name=TTTY17A
HG003_chrY	CAT	transcript	23355012	23356143	1000	+	.	source_transcript=ENST00000416110.1;source_transcript_name=TTTY17A-201;source_gene=ENSG00000228240.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228240.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000416110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416110.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17A;alternative_source_transcripts=ENST00000416110.1;transcript_id=HG003_chrY_T0001774;gene_id=HG003_chrY_G0000620;Parent=HG003_chrY_G0000620;transcript_name=HG003_chrY_T0001774;gene_name=TTTY17A;ID=HG003_chrY_T0001774;Name=TTTY17A
HG003_chrY	CAT	exon	23355012	23355071	.	+	.	source_transcript=ENST00000416110.1;source_transcript_name=TTTY17A-201;source_gene=ENSG00000228240.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228240.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000416110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17A;alternative_source_transcripts=ENST00000416110.1;transcript_id=HG003_chrY_T0001774;gene_id=HG003_chrY_G0000620;Parent=HG003_chrY_T0001774;transcript_name=HG003_chrY_T0001774;gene_name=TTTY17A;ID=exon:HG003_chrY_T0001774:0;Name=TTTY17A;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23355072	23356037	.	+	.	source_transcript=ENST00000416110.1;source_transcript_name=TTTY17A-201;source_gene=ENSG00000228240.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228240.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000416110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17A;alternative_source_transcripts=ENST00000416110.1;transcript_id=HG003_chrY_T0001774;gene_id=HG003_chrY_G0000620;Parent=HG003_chrY_T0001774;transcript_name=HG003_chrY_T0001774;gene_name=TTTY17A;ID=intron:HG003_chrY_T0001774:0;Name=TTTY17A;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23356038	23356143	.	+	.	source_transcript=ENST00000416110.1;source_transcript_name=TTTY17A-201;source_gene=ENSG00000228240.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228240.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000416110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17A;alternative_source_transcripts=ENST00000416110.1;transcript_id=HG003_chrY_T0001774;gene_id=HG003_chrY_G0000620;Parent=HG003_chrY_T0001774;transcript_name=HG003_chrY_T0001774;gene_name=TTTY17A;ID=exon:HG003_chrY_T0001774:1;Name=TTTY17A;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23364389	23365263	.	-	.	source_gene_common_name=TRIM60P5Y;source_gene=ENSG00000224210.1;gene_id=HG003_chrY_G0000621;gene_biotype=processed_pseudogene;gene_name=TRIM60P5Y;gene_sources=liftoff;ID=HG003_chrY_G0000621;Name=TRIM60P5Y
HG003_chrY	CAT	transcript	23364389	23365263	1000	-	.	source_transcript=ENST00000413946.1;source_transcript_name=TRIM60P5Y-201;source_gene=ENSG00000224210.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224210.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000413946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413946.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P5Y;transcript_id=HG003_chrY_T0001775;gene_id=HG003_chrY_G0000621;Parent=HG003_chrY_G0000621;transcript_name=HG003_chrY_T0001775;gene_name=TRIM60P5Y;ID=HG003_chrY_T0001775;Name=TRIM60P5Y
HG003_chrY	CAT	exon	23364389	23364686	.	-	.	source_transcript=ENST00000413946.1;source_transcript_name=TRIM60P5Y-201;source_gene=ENSG00000224210.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224210.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000413946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413946.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P5Y;transcript_id=HG003_chrY_T0001775;gene_id=HG003_chrY_G0000621;Parent=HG003_chrY_T0001775;transcript_name=HG003_chrY_T0001775;gene_name=TRIM60P5Y;ID=exon:HG003_chrY_T0001775:0;Name=TRIM60P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23364687	23364987	.	-	.	source_transcript=ENST00000413946.1;source_transcript_name=TRIM60P5Y-201;source_gene=ENSG00000224210.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224210.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000413946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413946.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P5Y;transcript_id=HG003_chrY_T0001775;gene_id=HG003_chrY_G0000621;Parent=HG003_chrY_T0001775;transcript_name=HG003_chrY_T0001775;gene_name=TRIM60P5Y;ID=intron:HG003_chrY_T0001775:0;Name=TRIM60P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23364988	23365263	.	-	.	source_transcript=ENST00000413946.1;source_transcript_name=TRIM60P5Y-201;source_gene=ENSG00000224210.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224210.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000413946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413946.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P5Y;transcript_id=HG003_chrY_T0001775;gene_id=HG003_chrY_G0000621;Parent=HG003_chrY_T0001775;transcript_name=HG003_chrY_T0001775;gene_name=TRIM60P5Y;ID=exon:HG003_chrY_T0001775:1;Name=TRIM60P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23369972	23371184	.	-	.	source_gene_common_name=ZNF736P11Y;source_gene=ENSG00000215537.3;alternative_source_transcripts=ENST00000442535.1;gene_id=HG003_chrY_G0000622;gene_biotype=processed_pseudogene;gene_name=ZNF736P11Y;gene_sources=liftoff;ID=HG003_chrY_G0000622;Name=ZNF736P11Y
HG003_chrY	CAT	transcript	23369972	23371184	1000	-	.	source_transcript=ENST00000442535.1;source_transcript_name=ZNF736P11Y-201;source_gene=ENSG00000215537.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000215537.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000442535.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442535.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P11Y;alternative_source_transcripts=ENST00000442535.1;transcript_id=HG003_chrY_T0001776;gene_id=HG003_chrY_G0000622;Parent=HG003_chrY_G0000622;transcript_name=HG003_chrY_T0001776;gene_name=ZNF736P11Y;ID=HG003_chrY_T0001776;Name=ZNF736P11Y
HG003_chrY	CAT	exon	23369972	23371184	.	-	.	source_transcript=ENST00000442535.1;source_transcript_name=ZNF736P11Y-201;source_gene=ENSG00000215537.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000215537.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000442535.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442535.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P11Y;alternative_source_transcripts=ENST00000442535.1;transcript_id=HG003_chrY_T0001776;gene_id=HG003_chrY_G0000622;Parent=HG003_chrY_T0001776;transcript_name=HG003_chrY_T0001776;gene_name=ZNF736P11Y;ID=exon:HG003_chrY_T0001776:0;Name=ZNF736P11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23439891	23476701	.	+	.	source_gene_common_name=TTTY4;source_gene=ENSG00000226906.1;alternative_source_transcripts=ENST00000436568.1,ENST00000436568.1;gene_id=HG003_chrY_G0000623;gene_biotype=lncRNA;gene_name=TTTY4;gene_sources=liftoff;ID=HG003_chrY_G0000623;Name=TTTY4
HG003_chrY	CAT	transcript	23439891	23476701	1000	+	.	source_transcript=ENST00000436568.1;source_transcript_name=TTTY4-201;source_gene=ENSG00000226906.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000226906.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436568.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436568.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=ENST00000436568.1,ENST00000436568.1;transcript_id=HG003_chrY_T0001777;gene_id=HG003_chrY_G0000623;Parent=HG003_chrY_G0000623;transcript_name=HG003_chrY_T0001777;gene_name=TTTY4;ID=HG003_chrY_T0001777;Name=TTTY4
HG003_chrY	CAT	exon	23439891	23440051	.	+	.	source_transcript=ENST00000436568.1;source_transcript_name=TTTY4-201;source_gene=ENSG00000226906.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000226906.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436568.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436568.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=ENST00000436568.1,ENST00000436568.1;transcript_id=HG003_chrY_T0001777;gene_id=HG003_chrY_G0000623;Parent=HG003_chrY_T0001777;transcript_name=HG003_chrY_T0001777;gene_name=TTTY4;ID=exon:HG003_chrY_T0001777:0;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23440052	23467062	.	+	.	source_transcript=ENST00000436568.1;source_transcript_name=TTTY4-201;source_gene=ENSG00000226906.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000226906.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436568.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436568.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=ENST00000436568.1,ENST00000436568.1;transcript_id=HG003_chrY_T0001777;gene_id=HG003_chrY_G0000623;Parent=HG003_chrY_T0001777;transcript_name=HG003_chrY_T0001777;gene_name=TTTY4;ID=intron:HG003_chrY_T0001777:0;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23467063	23467138	.	+	.	source_transcript=ENST00000436568.1;source_transcript_name=TTTY4-201;source_gene=ENSG00000226906.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000226906.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436568.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436568.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=ENST00000436568.1,ENST00000436568.1;transcript_id=HG003_chrY_T0001777;gene_id=HG003_chrY_G0000623;Parent=HG003_chrY_T0001777;transcript_name=HG003_chrY_T0001777;gene_name=TTTY4;ID=exon:HG003_chrY_T0001777:1;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23467139	23468942	.	+	.	source_transcript=ENST00000436568.1;source_transcript_name=TTTY4-201;source_gene=ENSG00000226906.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000226906.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436568.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436568.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=ENST00000436568.1,ENST00000436568.1;transcript_id=HG003_chrY_T0001777;gene_id=HG003_chrY_G0000623;Parent=HG003_chrY_T0001777;transcript_name=HG003_chrY_T0001777;gene_name=TTTY4;ID=intron:HG003_chrY_T0001777:1;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23468943	23469050	.	+	.	source_transcript=ENST00000436568.1;source_transcript_name=TTTY4-201;source_gene=ENSG00000226906.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000226906.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436568.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436568.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=ENST00000436568.1,ENST00000436568.1;transcript_id=HG003_chrY_T0001777;gene_id=HG003_chrY_G0000623;Parent=HG003_chrY_T0001777;transcript_name=HG003_chrY_T0001777;gene_name=TTTY4;ID=exon:HG003_chrY_T0001777:2;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23469051	23475700	.	+	.	source_transcript=ENST00000436568.1;source_transcript_name=TTTY4-201;source_gene=ENSG00000226906.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000226906.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436568.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436568.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=ENST00000436568.1,ENST00000436568.1;transcript_id=HG003_chrY_T0001777;gene_id=HG003_chrY_G0000623;Parent=HG003_chrY_T0001777;transcript_name=HG003_chrY_T0001777;gene_name=TTTY4;ID=intron:HG003_chrY_T0001777:2;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23475701	23476701	.	+	.	source_transcript=ENST00000436568.1;source_transcript_name=TTTY4-201;source_gene=ENSG00000226906.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000226906.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000436568.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436568.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4;alternative_source_transcripts=ENST00000436568.1,ENST00000436568.1;transcript_id=HG003_chrY_T0001777;gene_id=HG003_chrY_G0000623;Parent=HG003_chrY_T0001777;transcript_name=HG003_chrY_T0001777;gene_name=TTTY4;ID=exon:HG003_chrY_T0001777:3;Name=TTTY4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23477236	23508883	.	+	.	source_gene_common_name=BPY2C;source_gene=ENSG00000185894.8;alternative_source_transcripts=ENST00000602732.5;gene_id=HG003_chrY_G0000624;gene_biotype=protein_coding;gene_name=BPY2C;gene_sources=liftoff;ID=HG003_chrY_G0000624;Name=BPY2C
HG003_chrY	CAT	transcript	23477236	23495793	10000	+	.	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_G0000624;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=HG003_chrY_T0001778;Name=BPY2C
HG003_chrY	CAT	exon	23477236	23477391	.	+	.	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001778;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=exon:HG003_chrY_T0001778:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23477392	23487564	.	+	.	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001778;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=intron:HG003_chrY_T0001778:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23487565	23487633	.	+	.	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001778;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=exon:HG003_chrY_T0001778:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23487634	23487985	.	+	.	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001778;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=intron:HG003_chrY_T0001778:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23487986	23488108	.	+	.	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001778;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=exon:HG003_chrY_T0001778:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23488109	23491173	.	+	.	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001778;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=intron:HG003_chrY_T0001778:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23491174	23491310	.	+	.	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001778;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=exon:HG003_chrY_T0001778:3;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23491311	23495719	.	+	.	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001778;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=intron:HG003_chrY_T0001778:3;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23495720	23495793	.	+	.	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001778;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=exon:HG003_chrY_T0001778:4;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23495761	23495793	.	+	0	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001778;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=CDS:HG003_chrY_T0001778:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23495761	23495763	.	+	0	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001778;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=start_codon:HG003_chrY_T0001778;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23495791	23495793	.	+	0	source_transcript=ENST00000602680.1;source_transcript_name=BPY2C-203;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602680.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602680.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001778;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001778;transcript_name=HG003_chrY_T0001778;gene_name=BPY2C;ID=stop_codon:HG003_chrY_T0001778;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23487680	23508883	10000	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_G0000624;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=HG003_chrY_T0001779;Name=BPY2C
HG003_chrY	CAT	exon	23487680	23487710	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=exon:HG003_chrY_T0001779:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23487711	23487985	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=intron:HG003_chrY_T0001779:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23487986	23488108	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=exon:HG003_chrY_T0001779:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23488109	23491173	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=intron:HG003_chrY_T0001779:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23491174	23491310	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=exon:HG003_chrY_T0001779:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23491311	23495719	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=intron:HG003_chrY_T0001779:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23495720	23495838	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=exon:HG003_chrY_T0001779:3;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23495761	23495838	.	+	0	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=CDS:HG003_chrY_T0001779:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23495761	23495763	.	+	0	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=start_codon:HG003_chrY_T0001779;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23495839	23497897	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=intron:HG003_chrY_T0001779:3;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23497898	23498015	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=exon:HG003_chrY_T0001779:4;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23497898	23498015	.	+	0	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=CDS:HG003_chrY_T0001779:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23498016	23500869	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=intron:HG003_chrY_T0001779:4;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23500870	23500975	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=exon:HG003_chrY_T0001779:5;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23500870	23500975	.	+	2	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=CDS:HG003_chrY_T0001779:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23500976	23501667	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=intron:HG003_chrY_T0001779:5;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23501668	23501792	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=exon:HG003_chrY_T0001779:6;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23501668	23501686	.	+	1	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=CDS:HG003_chrY_T0001779:3;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23501684	23501686	.	+	0	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=stop_codon:HG003_chrY_T0001779;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23501793	23508342	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=intron:HG003_chrY_T0001779:6;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23508343	23508467	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=exon:HG003_chrY_T0001779:7;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23508468	23508561	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=intron:HG003_chrY_T0001779:7;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23508562	23508883	.	+	.	source_transcript=ENST00000382287.5;source_transcript_name=BPY2C-201;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382287.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382287.5;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001779;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001779;transcript_name=HG003_chrY_T0001779;gene_name=BPY2C;ID=exon:HG003_chrY_T0001779:8;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23487704	23508824	1000	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_G0000624;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=HG003_chrY_T0001780;Name=BPY2C
HG003_chrY	CAT	exon	23487704	23487710	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=exon:HG003_chrY_T0001780:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23487711	23487985	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=intron:HG003_chrY_T0001780:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23487986	23488108	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=exon:HG003_chrY_T0001780:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23488109	23491173	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=intron:HG003_chrY_T0001780:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23491174	23491310	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=exon:HG003_chrY_T0001780:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23491311	23495719	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=intron:HG003_chrY_T0001780:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23495720	23495838	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=exon:HG003_chrY_T0001780:3;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23495839	23500869	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=intron:HG003_chrY_T0001780:3;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23500870	23500975	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=exon:HG003_chrY_T0001780:4;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23500976	23501667	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=intron:HG003_chrY_T0001780:4;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23501668	23501792	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=exon:HG003_chrY_T0001780:5;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23501793	23508342	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=intron:HG003_chrY_T0001780:5;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23508343	23508472	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=exon:HG003_chrY_T0001780:6;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23508473	23508561	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=intron:HG003_chrY_T0001780:6;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23508562	23508824	.	+	.	source_transcript=ENST00000602559.5;source_transcript_name=BPY2C-202;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602559.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602559.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001780;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001780;transcript_name=HG003_chrY_T0001780;gene_name=BPY2C;ID=exon:HG003_chrY_T0001780:7;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23495761	23501686	10000	+	.	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_G0000624;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=HG003_chrY_T0001781;Name=BPY2C
HG003_chrY	CAT	exon	23495761	23495838	.	+	.	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=exon:HG003_chrY_T0001781:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23495761	23495838	.	+	0	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=CDS:HG003_chrY_T0001781:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23495761	23495763	.	+	0	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=start_codon:HG003_chrY_T0001781;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23495839	23497897	.	+	.	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=intron:HG003_chrY_T0001781:0;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23497898	23498015	.	+	.	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=exon:HG003_chrY_T0001781:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23497898	23498015	.	+	0	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=CDS:HG003_chrY_T0001781:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23498016	23500869	.	+	.	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=intron:HG003_chrY_T0001781:1;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23500870	23500975	.	+	.	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=exon:HG003_chrY_T0001781:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23500870	23500975	.	+	2	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=CDS:HG003_chrY_T0001781:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23500976	23501667	.	+	.	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=intron:HG003_chrY_T0001781:2;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23501668	23501686	.	+	.	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=exon:HG003_chrY_T0001781:3;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23501668	23501686	.	+	1	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=CDS:HG003_chrY_T0001781:3;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23501684	23501686	.	+	0	source_transcript=ENST00000618574.1;source_transcript_name=BPY2C-204;source_gene=ENSG00000185894.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000185894.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000618574.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618574.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2C;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001781;gene_id=HG003_chrY_G0000624;Parent=HG003_chrY_T0001781;transcript_name=HG003_chrY_T0001781;gene_name=BPY2C;ID=stop_codon:HG003_chrY_T0001781;Name=BPY2C;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23520484	23521210	.	+	.	source_gene_common_name=ENSG00000240566;source_gene=ENSG00000240566.1;gene_id=HG003_chrY_G0000625;gene_biotype=processed_pseudogene;gene_name=ENSG00000240566;gene_sources=liftoff;ID=HG003_chrY_G0000625;Name=ENSG00000240566
HG003_chrY	CAT	transcript	23520484	23521210	1000	+	.	source_transcript=ENST00000432862.1;source_transcript_name=ENST00000432862;source_gene=ENSG00000240566.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000240566.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000432862.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432862.1;transcript_score=199.724;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000240566;transcript_id=HG003_chrY_T0001782;gene_id=HG003_chrY_G0000625;Parent=HG003_chrY_G0000625;transcript_name=HG003_chrY_T0001782;gene_name=ENSG00000240566;ID=HG003_chrY_T0001782;Name=ENSG00000240566
HG003_chrY	CAT	exon	23520484	23521210	.	+	.	source_transcript=ENST00000432862.1;source_transcript_name=ENST00000432862;source_gene=ENSG00000240566.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000240566.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000432862.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000432862.1;transcript_score=199.724;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000240566;transcript_id=HG003_chrY_T0001782;gene_id=HG003_chrY_G0000625;Parent=HG003_chrY_T0001782;transcript_name=HG003_chrY_T0001782;gene_name=ENSG00000240566;ID=exon:HG003_chrY_T0001782:0;Name=ENSG00000240566;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23529016	23530085	.	+	.	source_gene_common_name=TRIM60P10Y;source_gene=ENSG00000232976.1;gene_id=HG003_chrY_G0000626;gene_biotype=processed_pseudogene;gene_name=TRIM60P10Y;gene_sources=liftoff;ID=HG003_chrY_G0000626;Name=TRIM60P10Y
HG003_chrY	CAT	transcript	23529016	23530085	1000	+	.	source_transcript=ENST00000425589.1;source_transcript_name=TRIM60P10Y-201;source_gene=ENSG00000232976.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232976.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000425589.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425589.1;transcript_score=299.86699999999996;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P10Y;transcript_id=HG003_chrY_T0001783;gene_id=HG003_chrY_G0000626;Parent=HG003_chrY_G0000626;transcript_name=HG003_chrY_T0001783;gene_name=TRIM60P10Y;ID=HG003_chrY_T0001783;Name=TRIM60P10Y
HG003_chrY	CAT	exon	23529016	23529246	.	+	.	source_transcript=ENST00000425589.1;source_transcript_name=TRIM60P10Y-201;source_gene=ENSG00000232976.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232976.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000425589.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425589.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P10Y;transcript_id=HG003_chrY_T0001783;gene_id=HG003_chrY_G0000626;Parent=HG003_chrY_T0001783;transcript_name=HG003_chrY_T0001783;gene_name=TRIM60P10Y;ID=exon:HG003_chrY_T0001783:0;Name=TRIM60P10Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23529247	23529565	.	+	.	source_transcript=ENST00000425589.1;source_transcript_name=TRIM60P10Y-201;source_gene=ENSG00000232976.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232976.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000425589.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425589.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P10Y;transcript_id=HG003_chrY_T0001783;gene_id=HG003_chrY_G0000626;Parent=HG003_chrY_T0001783;transcript_name=HG003_chrY_T0001783;gene_name=TRIM60P10Y;ID=intron:HG003_chrY_T0001783:0;Name=TRIM60P10Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23529566	23530085	.	+	.	source_transcript=ENST00000425589.1;source_transcript_name=TRIM60P10Y-201;source_gene=ENSG00000232976.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232976.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000425589.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425589.1;transcript_score=299.86699999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P10Y;transcript_id=HG003_chrY_T0001783;gene_id=HG003_chrY_G0000626;Parent=HG003_chrY_T0001783;transcript_name=HG003_chrY_T0001783;gene_name=TRIM60P10Y;ID=exon:HG003_chrY_T0001783:1;Name=TRIM60P10Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23553339	23554617	.	+	.	source_gene_common_name=ZNF736P2Y;source_gene=ENSG00000226270.3;gene_id=HG003_chrY_G0000627;gene_biotype=processed_pseudogene;gene_name=ZNF736P2Y;gene_sources=liftoff;ID=HG003_chrY_G0000627;Name=ZNF736P2Y
HG003_chrY	CAT	transcript	23553339	23554617	1000	+	.	source_transcript=ENST00000416040.1;source_transcript_name=ZNF736P2Y-201;source_gene=ENSG00000226270.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000226270.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000416040.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416040.1;transcript_score=199.922;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P2Y;transcript_id=HG003_chrY_T0001784;gene_id=HG003_chrY_G0000627;Parent=HG003_chrY_G0000627;transcript_name=HG003_chrY_T0001784;gene_name=ZNF736P2Y;ID=HG003_chrY_T0001784;Name=ZNF736P2Y
HG003_chrY	CAT	exon	23553339	23554617	.	+	.	source_transcript=ENST00000416040.1;source_transcript_name=ZNF736P2Y-201;source_gene=ENSG00000226270.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000226270.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000416040.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416040.1;transcript_score=199.922;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P2Y;transcript_id=HG003_chrY_T0001784;gene_id=HG003_chrY_G0000627;Parent=HG003_chrY_T0001784;transcript_name=HG003_chrY_T0001784;gene_name=ZNF736P2Y;ID=exon:HG003_chrY_T0001784:0;Name=ZNF736P2Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23561465	23562610	.	+	.	source_gene_common_name=TRIM60P11Y;source_gene=ENSG00000227837.1;gene_id=HG003_chrY_G0000628;gene_biotype=processed_pseudogene;gene_name=TRIM60P11Y;gene_sources=liftoff;ID=HG003_chrY_G0000628;Name=TRIM60P11Y
HG003_chrY	CAT	transcript	23561465	23562610	1000	+	.	source_transcript=ENST00000445313.1;source_transcript_name=TRIM60P11Y-201;source_gene=ENSG00000227837.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227837.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000445313.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445313.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P11Y;transcript_id=HG003_chrY_T0001785;gene_id=HG003_chrY_G0000628;Parent=HG003_chrY_G0000628;transcript_name=HG003_chrY_T0001785;gene_name=TRIM60P11Y;ID=HG003_chrY_T0001785;Name=TRIM60P11Y
HG003_chrY	CAT	exon	23561465	23561753	.	+	.	source_transcript=ENST00000445313.1;source_transcript_name=TRIM60P11Y-201;source_gene=ENSG00000227837.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227837.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000445313.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445313.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P11Y;transcript_id=HG003_chrY_T0001785;gene_id=HG003_chrY_G0000628;Parent=HG003_chrY_T0001785;transcript_name=HG003_chrY_T0001785;gene_name=TRIM60P11Y;ID=exon:HG003_chrY_T0001785:0;Name=TRIM60P11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23561754	23562094	.	+	.	source_transcript=ENST00000445313.1;source_transcript_name=TRIM60P11Y-201;source_gene=ENSG00000227837.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227837.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000445313.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445313.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P11Y;transcript_id=HG003_chrY_T0001785;gene_id=HG003_chrY_G0000628;Parent=HG003_chrY_T0001785;transcript_name=HG003_chrY_T0001785;gene_name=TRIM60P11Y;ID=intron:HG003_chrY_T0001785:0;Name=TRIM60P11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23562095	23562610	.	+	.	source_transcript=ENST00000445313.1;source_transcript_name=TRIM60P11Y-201;source_gene=ENSG00000227837.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227837.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000445313.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445313.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P11Y;transcript_id=HG003_chrY_T0001785;gene_id=HG003_chrY_G0000628;Parent=HG003_chrY_T0001785;transcript_name=HG003_chrY_T0001785;gene_name=TRIM60P11Y;ID=exon:HG003_chrY_T0001785:1;Name=TRIM60P11Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23632738	23694035	.	-	.	source_gene_common_name=DAZ3;source_gene=ENSG00000187191.16;gene_id=HG003_chrY_G0000629;gene_biotype=protein_coding;gene_name=DAZ3;gene_sources=liftoff;ID=HG003_chrY_G0000629;Name=DAZ3
HG003_chrY	CAT	transcript	23632738	23694012	100	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_G0000629;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=HG003_chrY_T0001786;Name=DAZ3
HG003_chrY	CAT	exon	23632738	23634594	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23634595	23638567	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23638568	23638666	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23638603	23638666	.	-	1	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23638603	23638605	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=stop_codon:HG003_chrY_T0001786;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23638667	23643238	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23643239	23643273	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23643239	23643273	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23643274	23644018	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23644019	23644090	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23644019	23644090	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23644091	23653805	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23653806	23653877	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23653806	23653877	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23653878	23658562	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23658563	23658634	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:5;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23658563	23658634	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23658635	23663335	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:5;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23663336	23663407	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:6;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23663336	23663407	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:5;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23663408	23668115	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:6;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23668116	23668187	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:7;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23668116	23668187	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:6;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23668188	23670505	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:7;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23670506	23670577	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:8;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23670506	23670577	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:7;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23670578	23672948	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:8;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23672949	23673020	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:9;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23672949	23673020	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:8;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23673021	23685270	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:9;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23685271	23685410	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:10;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23685271	23685410	.	-	2	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:9;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23685411	23685499	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:10;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23685500	23685563	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:11;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23685500	23685563	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:10;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23685564	23685999	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:11;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23686000	23686051	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:12;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23686000	23686051	.	-	1	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:11;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23686052	23686611	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:12;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23686612	23686703	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:13;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23686612	23686703	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:12;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23686704	23686977	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:13;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23686978	23687124	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:14;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23686978	23687124	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:13;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23687125	23693725	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=intron:HG003_chrY_T0001786:14;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23693726	23694012	.	-	.	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=exon:HG003_chrY_T0001786:15;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23693726	23693728	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001786:14;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23693726	23693728	.	-	0	source_transcript=ENST00000315357.9;source_transcript_name=DAZ3-201;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000315357.9;alignment_mode=liftoff;normalized_transcript_id=ENST00000315357.9;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001786;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001786;transcript_name=HG003_chrY_T0001786;gene_name=DAZ3;ID=start_codon:HG003_chrY_T0001786;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23632738	23693936	100	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_G0000629;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=HG003_chrY_T0001787;Name=DAZ3
HG003_chrY	CAT	exon	23632738	23634594	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23634595	23638567	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23638568	23638666	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23638603	23638666	.	-	1	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23638603	23638605	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=stop_codon:HG003_chrY_T0001787;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23638667	23643238	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23643239	23643273	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23643239	23643273	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23643274	23644018	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23644019	23644090	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23644019	23644090	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23644091	23653805	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23653806	23653877	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23653806	23653877	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23653878	23656182	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23656183	23656254	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:5;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23656183	23656254	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23656255	23658562	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:5;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23658563	23658634	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:6;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23658563	23658634	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:5;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23658635	23660939	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:6;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23660940	23661011	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:7;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23660940	23661011	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:6;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23661012	23663335	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:7;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23663336	23663407	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:8;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23663336	23663407	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:7;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23663408	23665719	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:8;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23665720	23665791	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:9;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23665720	23665791	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:8;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23665792	23668115	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:9;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23668116	23668187	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:10;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23668116	23668187	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:9;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23668188	23670505	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:10;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23670506	23670577	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:11;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23670506	23670577	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:10;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23670578	23672948	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:11;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23672949	23673020	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:12;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23672949	23673020	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:11;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23673021	23685270	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:12;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23685271	23685410	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:13;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23685271	23685410	.	-	2	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:12;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23685411	23685499	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:13;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23685500	23685563	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:14;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23685500	23685563	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:13;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23685564	23685999	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:14;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23686000	23686051	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:15;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23686000	23686051	.	-	1	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:14;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23686052	23686611	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:15;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23686612	23686703	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:16;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23686612	23686703	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:15;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23686704	23686977	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:16;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23686978	23687124	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:17;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23686978	23687124	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:16;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23687125	23693725	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=intron:HG003_chrY_T0001787:17;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23693726	23693936	.	-	.	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=exon:HG003_chrY_T0001787:18;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23693726	23693728	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001787:17;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23693726	23693728	.	-	0	source_transcript=ENST00000382365.7;source_transcript_name=DAZ3-202;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382365.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000382365.7;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001787;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001787;transcript_name=HG003_chrY_T0001787;gene_name=DAZ3;ID=start_codon:HG003_chrY_T0001787;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23632738	23694035	100	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_G0000629;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=HG003_chrY_T0001788;Name=DAZ3
HG003_chrY	CAT	exon	23632738	23634594	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23634595	23638567	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23638568	23638666	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23638603	23638666	.	-	1	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23638603	23638605	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=stop_codon:HG003_chrY_T0001788;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23638667	23643238	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23643239	23643273	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23643239	23643273	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23643274	23644018	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23644019	23644090	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23644019	23644090	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23644091	23658562	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23658563	23658634	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23658563	23658634	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23658635	23660939	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23660940	23661011	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:5;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23660940	23661011	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23661012	23663335	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:5;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23663336	23663407	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:6;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23663336	23663407	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:5;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23663408	23665719	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:6;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23665720	23665791	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:7;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23665720	23665791	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:6;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23665792	23668115	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:7;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23668116	23668187	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:8;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23668116	23668187	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:7;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23668188	23670505	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:8;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23670506	23670577	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:9;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23670506	23670577	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:8;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23670578	23672948	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:9;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23672949	23673020	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:10;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23672949	23673020	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:9;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23673021	23685270	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:10;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23685271	23685410	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:11;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23685271	23685410	.	-	2	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:10;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23685411	23685499	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:11;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23685500	23685563	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:12;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23685500	23685563	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:11;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23685564	23685999	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:12;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23686000	23686051	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:13;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23686000	23686051	.	-	1	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:12;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23686052	23686611	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:13;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23686612	23686703	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:14;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23686612	23686703	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:13;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23686704	23686977	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:14;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23686978	23687124	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:15;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23686978	23687124	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:14;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23687125	23693725	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=intron:HG003_chrY_T0001788:15;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23693726	23694035	.	-	.	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=exon:HG003_chrY_T0001788:16;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23693726	23693728	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=CDS:HG003_chrY_T0001788:15;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23693726	23693728	.	-	0	source_transcript=ENST00000446723.4;source_transcript_name=DAZ3-203;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000446723.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000446723.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001788;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001788;transcript_name=HG003_chrY_T0001788;gene_name=DAZ3;ID=start_codon:HG003_chrY_T0001788;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23632746	23644205	1000	-	.	source_transcript=ENST00000692367.1;source_transcript_name=DAZ3-205;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000692367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000692367.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=ENST00000466332.1;transcript_id=HG003_chrY_T0001789;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_G0000629;transcript_name=HG003_chrY_T0001789;gene_name=DAZ3;ID=HG003_chrY_T0001789;Name=DAZ3
HG003_chrY	CAT	exon	23632746	23634594	.	-	.	source_transcript=ENST00000692367.1;source_transcript_name=DAZ3-205;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000692367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000692367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=ENST00000466332.1;transcript_id=HG003_chrY_T0001789;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001789;transcript_name=HG003_chrY_T0001789;gene_name=DAZ3;ID=exon:HG003_chrY_T0001789:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23634595	23638567	.	-	.	source_transcript=ENST00000692367.1;source_transcript_name=DAZ3-205;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000692367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000692367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=ENST00000466332.1;transcript_id=HG003_chrY_T0001789;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001789;transcript_name=HG003_chrY_T0001789;gene_name=DAZ3;ID=intron:HG003_chrY_T0001789:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23638568	23638666	.	-	.	source_transcript=ENST00000692367.1;source_transcript_name=DAZ3-205;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000692367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000692367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=ENST00000466332.1;transcript_id=HG003_chrY_T0001789;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001789;transcript_name=HG003_chrY_T0001789;gene_name=DAZ3;ID=exon:HG003_chrY_T0001789:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23638667	23641601	.	-	.	source_transcript=ENST00000692367.1;source_transcript_name=DAZ3-205;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000692367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000692367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=ENST00000466332.1;transcript_id=HG003_chrY_T0001789;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001789;transcript_name=HG003_chrY_T0001789;gene_name=DAZ3;ID=intron:HG003_chrY_T0001789:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23641602	23641673	.	-	.	source_transcript=ENST00000692367.1;source_transcript_name=DAZ3-205;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000692367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000692367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=ENST00000466332.1;transcript_id=HG003_chrY_T0001789;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001789;transcript_name=HG003_chrY_T0001789;gene_name=DAZ3;ID=exon:HG003_chrY_T0001789:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23641674	23643238	.	-	.	source_transcript=ENST00000692367.1;source_transcript_name=DAZ3-205;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000692367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000692367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=ENST00000466332.1;transcript_id=HG003_chrY_T0001789;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001789;transcript_name=HG003_chrY_T0001789;gene_name=DAZ3;ID=intron:HG003_chrY_T0001789:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23643239	23643273	.	-	.	source_transcript=ENST00000692367.1;source_transcript_name=DAZ3-205;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000692367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000692367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=ENST00000466332.1;transcript_id=HG003_chrY_T0001789;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001789;transcript_name=HG003_chrY_T0001789;gene_name=DAZ3;ID=exon:HG003_chrY_T0001789:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23643274	23644018	.	-	.	source_transcript=ENST00000692367.1;source_transcript_name=DAZ3-205;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000692367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000692367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=ENST00000466332.1;transcript_id=HG003_chrY_T0001789;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001789;transcript_name=HG003_chrY_T0001789;gene_name=DAZ3;ID=intron:HG003_chrY_T0001789:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23644019	23644205	.	-	.	source_transcript=ENST00000692367.1;source_transcript_name=DAZ3-205;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000692367.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000692367.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;alternative_source_transcripts=ENST00000466332.1;transcript_id=HG003_chrY_T0001789;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001789;transcript_name=HG003_chrY_T0001789;gene_name=DAZ3;ID=exon:HG003_chrY_T0001789:4;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23633426	23644217	1000	-	.	source_transcript=ENST00000691059.1;source_transcript_name=DAZ3-204;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000691059.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691059.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001790;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_G0000629;transcript_name=HG003_chrY_T0001790;gene_name=DAZ3;ID=HG003_chrY_T0001790;Name=DAZ3
HG003_chrY	CAT	exon	23633426	23634594	.	-	.	source_transcript=ENST00000691059.1;source_transcript_name=DAZ3-204;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000691059.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691059.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001790;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001790;transcript_name=HG003_chrY_T0001790;gene_name=DAZ3;ID=exon:HG003_chrY_T0001790:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23634595	23638567	.	-	.	source_transcript=ENST00000691059.1;source_transcript_name=DAZ3-204;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000691059.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691059.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001790;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001790;transcript_name=HG003_chrY_T0001790;gene_name=DAZ3;ID=intron:HG003_chrY_T0001790:0;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23638568	23638666	.	-	.	source_transcript=ENST00000691059.1;source_transcript_name=DAZ3-204;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000691059.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691059.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001790;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001790;transcript_name=HG003_chrY_T0001790;gene_name=DAZ3;ID=exon:HG003_chrY_T0001790:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23638667	23643238	.	-	.	source_transcript=ENST00000691059.1;source_transcript_name=DAZ3-204;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000691059.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691059.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001790;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001790;transcript_name=HG003_chrY_T0001790;gene_name=DAZ3;ID=intron:HG003_chrY_T0001790:1;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23643239	23643273	.	-	.	source_transcript=ENST00000691059.1;source_transcript_name=DAZ3-204;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000691059.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691059.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001790;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001790;transcript_name=HG003_chrY_T0001790;gene_name=DAZ3;ID=exon:HG003_chrY_T0001790:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23643274	23644018	.	-	.	source_transcript=ENST00000691059.1;source_transcript_name=DAZ3-204;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000691059.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691059.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001790;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001790;transcript_name=HG003_chrY_T0001790;gene_name=DAZ3;ID=intron:HG003_chrY_T0001790:2;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23644019	23644217	.	-	.	source_transcript=ENST00000691059.1;source_transcript_name=DAZ3-204;source_gene=ENSG00000187191.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000187191.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000691059.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000691059.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ3;transcript_id=HG003_chrY_T0001790;gene_id=HG003_chrY_G0000629;Parent=HG003_chrY_T0001790;transcript_name=HG003_chrY_T0001790;gene_name=DAZ3;ID=exon:HG003_chrY_T0001790:3;Name=DAZ3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23714386	23767204	.	+	.	source_gene_common_name=DAZ4;source_gene=ENSG00000205916.12;gene_id=HG003_chrY_G0000630;gene_biotype=protein_coding;gene_name=DAZ4;gene_sources=liftoff;ID=HG003_chrY_G0000630;Name=DAZ4
HG003_chrY	CAT	transcript	23714386	23767204	9920	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;frameshift=True;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_G0000630;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=HG003_chrY_T0001791;Name=DAZ4
HG003_chrY	CAT	exon	23714386	23714672	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=exon:HG003_chrY_T0001791:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23714670	23714672	.	+	0	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001791:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23714670	23714672	.	+	0	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=start_codon:HG003_chrY_T0001791;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23714673	23724527	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=intron:HG003_chrY_T0001791:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23724528	23724599	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=exon:HG003_chrY_T0001791:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23724528	23724599	.	+	0	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001791:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23724600	23726970	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=intron:HG003_chrY_T0001791:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23726971	23727042	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=exon:HG003_chrY_T0001791:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23726971	23727042	.	+	0	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001791:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23727043	23743930	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=intron:HG003_chrY_T0001791:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23743931	23744002	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=exon:HG003_chrY_T0001791:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23743931	23744002	.	+	0	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001791:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23744003	23746315	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=intron:HG003_chrY_T0001791:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23746316	23746387	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=exon:HG003_chrY_T0001791:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23746316	23746387	.	+	0	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001791:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23746388	23748699	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=intron:HG003_chrY_T0001791:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23748700	23748771	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=exon:HG003_chrY_T0001791:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23748700	23748771	.	+	0	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001791:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23748772	23755851	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=intron:HG003_chrY_T0001791:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23755852	23755923	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=exon:HG003_chrY_T0001791:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23755852	23755923	.	+	0	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001791:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23755924	23756668	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=intron:HG003_chrY_T0001791:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23756669	23756703	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=exon:HG003_chrY_T0001791:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23756669	23756703	.	+	0	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001791:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23756704	23761275	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=intron:HG003_chrY_T0001791:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23761276	23761374	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=exon:HG003_chrY_T0001791:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23761276	23761339	.	+	1	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001791:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23761337	23761339	.	+	0	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=stop_codon:HG003_chrY_T0001791;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23761375	23765347	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=intron:HG003_chrY_T0001791:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23765348	23767204	.	+	.	source_transcript=ENST00000415508.6;source_transcript_name=DAZ4-204;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000415508.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000415508.6;transcript_score=208.224;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001791;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001791;transcript_name=HG003_chrY_T0001791;gene_name=DAZ4;ID=exon:HG003_chrY_T0001791:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23714460	23767200	9920	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;frameshift=True;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_G0000630;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=HG003_chrY_T0001792;Name=DAZ4
HG003_chrY	CAT	exon	23714460	23714672	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=exon:HG003_chrY_T0001792:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23714670	23714672	.	+	0	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001792:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23714670	23714672	.	+	0	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=start_codon:HG003_chrY_T0001792;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23714673	23724527	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=intron:HG003_chrY_T0001792:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23724528	23724599	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=exon:HG003_chrY_T0001792:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23724528	23724599	.	+	0	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001792:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23724600	23726970	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=intron:HG003_chrY_T0001792:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23726971	23727042	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=exon:HG003_chrY_T0001792:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23726971	23727042	.	+	0	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001792:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23727043	23729360	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=intron:HG003_chrY_T0001792:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23729361	23729432	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=exon:HG003_chrY_T0001792:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23729361	23729432	.	+	0	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001792:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23729433	23731756	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=intron:HG003_chrY_T0001792:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23731757	23731828	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=exon:HG003_chrY_T0001792:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23731757	23731828	.	+	0	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001792:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23731829	23755851	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=intron:HG003_chrY_T0001792:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23755852	23755923	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=exon:HG003_chrY_T0001792:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23755852	23755923	.	+	0	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001792:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23755924	23756668	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=intron:HG003_chrY_T0001792:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23756669	23756703	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=exon:HG003_chrY_T0001792:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23756669	23756703	.	+	0	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001792:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23756704	23761275	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=intron:HG003_chrY_T0001792:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23761276	23761374	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=exon:HG003_chrY_T0001792:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23761276	23761339	.	+	1	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001792:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23761337	23761339	.	+	0	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=stop_codon:HG003_chrY_T0001792;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23761375	23765347	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=intron:HG003_chrY_T0001792:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23765348	23767200	.	+	.	source_transcript=ENST00000449750.7;source_transcript_name=DAZ4-206;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000449750.7;alignment_mode=liftoff;normalized_transcript_id=ENST00000449750.7;transcript_score=189.085;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001792;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001792;transcript_name=HG003_chrY_T0001792;gene_name=DAZ4;ID=exon:HG003_chrY_T0001792:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23714460	23767200	9930	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;frameshift=True;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_G0000630;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=HG003_chrY_T0001793;Name=DAZ4
HG003_chrY	CAT	exon	23714460	23714672	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23714670	23714672	.	+	0	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23714670	23714672	.	+	0	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=start_codon:HG003_chrY_T0001793;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23714673	23721273	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23721274	23721420	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23721274	23721420	.	+	0	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23721421	23721694	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23721695	23721786	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23721695	23721786	.	+	0	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23721787	23722346	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23722347	23722398	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23722347	23722398	.	+	1	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23722399	23722834	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23722835	23722898	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23722835	23722898	.	+	0	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23722899	23722987	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23722988	23723127	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23722988	23723127	.	+	2	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23723128	23724527	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23724528	23724599	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23724528	23724599	.	+	0	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23724600	23726970	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23726971	23727042	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23726971	23727042	.	+	0	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23727043	23729360	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23729361	23729432	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23729361	23729432	.	+	0	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23729433	23731756	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23731757	23731828	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23731757	23731828	.	+	0	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23731829	23755851	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23755852	23755923	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:10;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23755852	23755923	.	+	0	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:10;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23755924	23756668	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:10;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23756669	23756703	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:11;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23756669	23756703	.	+	0	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:11;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23756704	23761275	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:11;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23761276	23761374	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:12;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23761276	23761339	.	+	1	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001793:12;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23761337	23761339	.	+	0	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=stop_codon:HG003_chrY_T0001793;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23761375	23765347	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=intron:HG003_chrY_T0001793:12;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23765348	23767200	.	+	.	source_transcript=ENST00000382314.6;source_transcript_name=DAZ4-202;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382314.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382314.6;transcript_score=209.17673913043478;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001793;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001793;transcript_name=HG003_chrY_T0001793;gene_name=DAZ4;ID=exon:HG003_chrY_T0001793:13;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23714462	23767204	9940	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;frameshift=True;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_G0000630;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=HG003_chrY_T0001794;Name=DAZ4
HG003_chrY	CAT	exon	23714462	23714672	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23714670	23714672	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23714670	23714672	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=start_codon:HG003_chrY_T0001794;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23714673	23721273	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:0;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23721274	23721420	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23721274	23721420	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23721421	23721694	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:1;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23721695	23721786	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23721695	23721786	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23721787	23722346	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:2;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23722347	23722398	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23722347	23722398	.	+	1	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23722399	23722834	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:3;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23722835	23722898	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23722835	23722898	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23722899	23722987	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:4;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23722988	23723127	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23722988	23723127	.	+	2	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23723128	23724527	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:5;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23724528	23724599	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23724528	23724599	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23724600	23726970	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:6;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23726971	23727042	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23726971	23727042	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23727043	23729360	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:7;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23729361	23729432	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23729361	23729432	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23729433	23731756	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:8;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23731757	23731828	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23731757	23731828	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23731829	23743930	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:9;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23743931	23744002	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:10;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23743931	23744002	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:10;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23744003	23746315	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:10;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23746316	23746387	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:11;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23746316	23746387	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:11;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23746388	23748699	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:11;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23748700	23748771	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:12;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23748700	23748771	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:12;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23748772	23751083	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:12;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23751084	23751155	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:13;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23751084	23751155	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:13;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23751156	23753467	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:13;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23753468	23753539	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:14;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23753468	23753539	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:14;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23753540	23755851	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:14;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23755852	23755923	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:15;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23755852	23755923	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:15;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23755924	23756668	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:15;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23756669	23756703	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:16;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23756669	23756703	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:16;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23756704	23761275	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:16;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23761276	23761374	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:17;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23761276	23761339	.	+	1	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=CDS:HG003_chrY_T0001794:17;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23761337	23761339	.	+	0	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=stop_codon:HG003_chrY_T0001794;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23761375	23765347	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=intron:HG003_chrY_T0001794:17;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23765348	23767204	.	+	.	source_transcript=ENST00000682740.1;source_transcript_name=DAZ4-208;source_gene=ENSG00000205916.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205916.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000682740.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000682740.1;transcript_score=224.7987142857143;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ4;transcript_id=HG003_chrY_T0001794;gene_id=HG003_chrY_G0000630;Parent=HG003_chrY_T0001794;transcript_name=HG003_chrY_T0001794;gene_name=DAZ4;ID=exon:HG003_chrY_T0001794:18;Name=DAZ4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23837349	23838494	.	-	.	source_gene_common_name=ENSG00000278602;source_gene=ENSG00000278602.1;gene_id=HG003_chrY_G0000631;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000278602;gene_sources=liftoff;ID=HG003_chrY_G0000631;Name=ENSG00000278602
HG003_chrY	CAT	transcript	23837349	23838494	1000	-	.	source_transcript=ENST00000616864.1;source_transcript_name=ENST00000616864;source_gene=ENSG00000278602.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000278602.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000616864.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000616864.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278602;transcript_id=HG003_chrY_T0001795;gene_id=HG003_chrY_G0000631;Parent=HG003_chrY_G0000631;transcript_name=HG003_chrY_T0001795;gene_name=ENSG00000278602;ID=HG003_chrY_T0001795;Name=ENSG00000278602
HG003_chrY	CAT	exon	23837349	23837872	.	-	.	source_transcript=ENST00000616864.1;source_transcript_name=ENST00000616864;source_gene=ENSG00000278602.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000278602.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000616864.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000616864.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278602;transcript_id=HG003_chrY_T0001795;gene_id=HG003_chrY_G0000631;Parent=HG003_chrY_T0001795;transcript_name=HG003_chrY_T0001795;gene_name=ENSG00000278602;ID=exon:HG003_chrY_T0001795:0;Name=ENSG00000278602;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23837873	23838227	.	-	.	source_transcript=ENST00000616864.1;source_transcript_name=ENST00000616864;source_gene=ENSG00000278602.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000278602.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000616864.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000616864.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278602;transcript_id=HG003_chrY_T0001795;gene_id=HG003_chrY_G0000631;Parent=HG003_chrY_T0001795;transcript_name=HG003_chrY_T0001795;gene_name=ENSG00000278602;ID=intron:HG003_chrY_T0001795:0;Name=ENSG00000278602;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23838228	23838494	.	-	.	source_transcript=ENST00000616864.1;source_transcript_name=ENST00000616864;source_gene=ENSG00000278602.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000278602.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000616864.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000616864.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278602;transcript_id=HG003_chrY_T0001795;gene_id=HG003_chrY_G0000631;Parent=HG003_chrY_T0001795;transcript_name=HG003_chrY_T0001795;gene_name=ENSG00000278602;ID=exon:HG003_chrY_T0001795:1;Name=ENSG00000278602;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23845378	23846653	.	-	.	source_gene_common_name=ZNF736P1Y;source_gene=ENSG00000223978.1;gene_id=HG003_chrY_G0000632;gene_biotype=processed_pseudogene;gene_name=ZNF736P1Y;gene_sources=liftoff;ID=HG003_chrY_G0000632;Name=ZNF736P1Y
HG003_chrY	CAT	transcript	23845378	23846653	1000	-	.	source_transcript=ENST00000440402.1;source_transcript_name=ZNF736P1Y-201;source_gene=ENSG00000223978.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000223978.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000440402.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440402.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P1Y;transcript_id=HG003_chrY_T0001796;gene_id=HG003_chrY_G0000632;Parent=HG003_chrY_G0000632;transcript_name=HG003_chrY_T0001796;gene_name=ZNF736P1Y;ID=HG003_chrY_T0001796;Name=ZNF736P1Y
HG003_chrY	CAT	exon	23845378	23846653	.	-	.	source_transcript=ENST00000440402.1;source_transcript_name=ZNF736P1Y-201;source_gene=ENSG00000223978.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000223978.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000440402.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440402.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P1Y;transcript_id=HG003_chrY_T0001796;gene_id=HG003_chrY_G0000632;Parent=HG003_chrY_T0001796;transcript_name=HG003_chrY_T0001796;gene_name=ZNF736P1Y;ID=exon:HG003_chrY_T0001796:0;Name=ZNF736P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23869876	23870945	.	-	.	source_gene_common_name=ENSG00000278197;source_gene=ENSG00000278197.1;gene_id=HG003_chrY_G0000633;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000278197;gene_sources=liftoff;ID=HG003_chrY_G0000633;Name=ENSG00000278197
HG003_chrY	CAT	transcript	23869876	23870945	1000	-	.	source_transcript=ENST00000618453.1;source_transcript_name=ENST00000618453;source_gene=ENSG00000278197.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000278197.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000618453.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618453.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278197;transcript_id=HG003_chrY_T0001797;gene_id=HG003_chrY_G0000633;Parent=HG003_chrY_G0000633;transcript_name=HG003_chrY_T0001797;gene_name=ENSG00000278197;ID=HG003_chrY_T0001797;Name=ENSG00000278197
HG003_chrY	CAT	exon	23869876	23870397	.	-	.	source_transcript=ENST00000618453.1;source_transcript_name=ENST00000618453;source_gene=ENSG00000278197.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000278197.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000618453.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278197;transcript_id=HG003_chrY_T0001797;gene_id=HG003_chrY_G0000633;Parent=HG003_chrY_T0001797;transcript_name=HG003_chrY_T0001797;gene_name=ENSG00000278197;ID=exon:HG003_chrY_T0001797:0;Name=ENSG00000278197;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23870398	23870718	.	-	.	source_transcript=ENST00000618453.1;source_transcript_name=ENST00000618453;source_gene=ENSG00000278197.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000278197.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000618453.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278197;transcript_id=HG003_chrY_T0001797;gene_id=HG003_chrY_G0000633;Parent=HG003_chrY_T0001797;transcript_name=HG003_chrY_T0001797;gene_name=ENSG00000278197;ID=intron:HG003_chrY_T0001797:0;Name=ENSG00000278197;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23870719	23870945	.	-	.	source_transcript=ENST00000618453.1;source_transcript_name=ENST00000618453;source_gene=ENSG00000278197.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000278197.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000618453.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000618453.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000278197;transcript_id=HG003_chrY_T0001797;gene_id=HG003_chrY_G0000633;Parent=HG003_chrY_T0001797;transcript_name=HG003_chrY_T0001797;gene_name=ENSG00000278197;ID=exon:HG003_chrY_T0001797:1;Name=ENSG00000278197;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23878720	23879478	.	-	.	source_gene_common_name=ENSG00000244000;source_gene=ENSG00000244000.1;gene_id=HG003_chrY_G0000634;gene_biotype=processed_pseudogene;gene_name=ENSG00000244000;gene_sources=liftoff;ID=HG003_chrY_G0000634;Name=ENSG00000244000
HG003_chrY	CAT	transcript	23878720	23879478	1000	-	.	source_transcript=ENST00000422002.1;source_transcript_name=ENST00000422002;source_gene=ENSG00000244000.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000244000.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000422002.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422002.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000244000;transcript_id=HG003_chrY_T0001798;gene_id=HG003_chrY_G0000634;Parent=HG003_chrY_G0000634;transcript_name=HG003_chrY_T0001798;gene_name=ENSG00000244000;ID=HG003_chrY_T0001798;Name=ENSG00000244000
HG003_chrY	CAT	exon	23878720	23879478	.	-	.	source_transcript=ENST00000422002.1;source_transcript_name=ENST00000422002;source_gene=ENSG00000244000.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000244000.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000422002.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422002.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000244000;transcript_id=HG003_chrY_T0001798;gene_id=HG003_chrY_G0000634;Parent=HG003_chrY_T0001798;transcript_name=HG003_chrY_T0001798;gene_name=ENSG00000244000;ID=exon:HG003_chrY_T0001798:0;Name=ENSG00000244000;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23891075	23922722	.	-	.	source_gene_common_name=BPY2B;source_gene=ENSG00000183795.8;alternative_source_transcripts=ENST00000331070.8;gene_id=HG003_chrY_G0000635;gene_biotype=protein_coding;gene_name=BPY2B;gene_sources=liftoff;ID=HG003_chrY_G0000635;Name=BPY2B
HG003_chrY	CAT	transcript	23891075	23912278	100	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_G0000635;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=HG003_chrY_T0001799;Name=BPY2B
HG003_chrY	CAT	exon	23891075	23891396	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=exon:HG003_chrY_T0001799:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23891397	23891490	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=intron:HG003_chrY_T0001799:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23891491	23891615	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=exon:HG003_chrY_T0001799:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23891616	23898165	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=intron:HG003_chrY_T0001799:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23898166	23898290	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=exon:HG003_chrY_T0001799:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23898272	23898290	.	-	1	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=CDS:HG003_chrY_T0001799:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23898272	23898274	.	-	0	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=stop_codon:HG003_chrY_T0001799;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23898291	23898982	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=intron:HG003_chrY_T0001799:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23898983	23899088	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=exon:HG003_chrY_T0001799:3;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23898983	23899088	.	-	2	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=CDS:HG003_chrY_T0001799:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23899089	23901942	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=intron:HG003_chrY_T0001799:3;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23901943	23902060	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=exon:HG003_chrY_T0001799:4;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23901943	23902060	.	-	0	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=CDS:HG003_chrY_T0001799:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23902061	23904119	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=intron:HG003_chrY_T0001799:4;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23904120	23904238	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=exon:HG003_chrY_T0001799:5;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23904120	23904197	.	-	0	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=CDS:HG003_chrY_T0001799:3;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23904195	23904197	.	-	0	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=start_codon:HG003_chrY_T0001799;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23904239	23908647	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=intron:HG003_chrY_T0001799:5;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23908648	23908784	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=exon:HG003_chrY_T0001799:6;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23908785	23911849	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=intron:HG003_chrY_T0001799:6;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23911850	23911972	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=exon:HG003_chrY_T0001799:7;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23911973	23912247	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=intron:HG003_chrY_T0001799:7;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23912248	23912278	.	-	.	source_transcript=ENST00000382392.5;source_transcript_name=BPY2B-201;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382392.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382392.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000331070.8;transcript_id=HG003_chrY_T0001799;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001799;transcript_name=HG003_chrY_T0001799;gene_name=BPY2B;ID=exon:HG003_chrY_T0001799:8;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23891134	23912254	1000	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_G0000635;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=HG003_chrY_T0001800;Name=BPY2B
HG003_chrY	CAT	exon	23891134	23891396	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=exon:HG003_chrY_T0001800:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23891397	23891485	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=intron:HG003_chrY_T0001800:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23891486	23891615	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=exon:HG003_chrY_T0001800:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23891616	23898165	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=intron:HG003_chrY_T0001800:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23898166	23898290	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=exon:HG003_chrY_T0001800:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23898291	23898982	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=intron:HG003_chrY_T0001800:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23898983	23899088	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=exon:HG003_chrY_T0001800:3;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23899089	23904119	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=intron:HG003_chrY_T0001800:3;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23904120	23904238	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=exon:HG003_chrY_T0001800:4;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23904239	23908647	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=intron:HG003_chrY_T0001800:4;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23908648	23908784	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=exon:HG003_chrY_T0001800:5;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23908785	23911849	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=intron:HG003_chrY_T0001800:5;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23911850	23911972	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=exon:HG003_chrY_T0001800:6;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23911973	23912247	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=intron:HG003_chrY_T0001800:6;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23912248	23912254	.	-	.	source_transcript=ENST00000602549.1;source_transcript_name=BPY2B-202;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000602549.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602818.2;transcript_id=HG003_chrY_T0001800;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001800;transcript_name=HG003_chrY_T0001800;gene_name=BPY2B;ID=exon:HG003_chrY_T0001800:7;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23898272	23904197	100	-	.	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_G0000635;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=HG003_chrY_T0001801;Name=BPY2B
HG003_chrY	CAT	exon	23898272	23898290	.	-	.	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=exon:HG003_chrY_T0001801:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23898272	23898290	.	-	1	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=CDS:HG003_chrY_T0001801:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	23898272	23898274	.	-	0	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=stop_codon:HG003_chrY_T0001801;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23898291	23898982	.	-	.	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=intron:HG003_chrY_T0001801:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23898983	23899088	.	-	.	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=exon:HG003_chrY_T0001801:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23898983	23899088	.	-	2	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=CDS:HG003_chrY_T0001801:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23899089	23901942	.	-	.	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=intron:HG003_chrY_T0001801:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23901943	23902060	.	-	.	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=exon:HG003_chrY_T0001801:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23901943	23902060	.	-	0	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=CDS:HG003_chrY_T0001801:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23902061	23904119	.	-	.	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=intron:HG003_chrY_T0001801:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23904120	23904197	.	-	.	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=exon:HG003_chrY_T0001801:3;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23904120	23904197	.	-	0	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=CDS:HG003_chrY_T0001801:3;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23904195	23904197	.	-	0	source_transcript=ENST00000615850.1;source_transcript_name=BPY2B-204;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000615850.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000615850.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000382585.2;transcript_id=HG003_chrY_T0001801;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001801;transcript_name=HG003_chrY_T0001801;gene_name=BPY2B;ID=start_codon:HG003_chrY_T0001801;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	23904165	23922722	100	-	.	source_transcript=ENST00000602770.5;source_transcript_name=BPY2B-203;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602770.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602770.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001802;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_G0000635;transcript_name=HG003_chrY_T0001802;gene_name=BPY2B;ID=HG003_chrY_T0001802;Name=BPY2B
HG003_chrY	CAT	exon	23904165	23904238	.	-	.	source_transcript=ENST00000602770.5;source_transcript_name=BPY2B-203;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602770.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602770.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001802;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001802;transcript_name=HG003_chrY_T0001802;gene_name=BPY2B;ID=exon:HG003_chrY_T0001802:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	23904165	23904197	.	-	0	source_transcript=ENST00000602770.5;source_transcript_name=BPY2B-203;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602770.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602770.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001802;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001802;transcript_name=HG003_chrY_T0001802;gene_name=BPY2B;ID=CDS:HG003_chrY_T0001802:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	23904195	23904197	.	-	0	source_transcript=ENST00000602770.5;source_transcript_name=BPY2B-203;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602770.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602770.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001802;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001802;transcript_name=HG003_chrY_T0001802;gene_name=BPY2B;ID=start_codon:HG003_chrY_T0001802;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23904239	23908647	.	-	.	source_transcript=ENST00000602770.5;source_transcript_name=BPY2B-203;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602770.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602770.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001802;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001802;transcript_name=HG003_chrY_T0001802;gene_name=BPY2B;ID=intron:HG003_chrY_T0001802:0;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23908648	23908784	.	-	.	source_transcript=ENST00000602770.5;source_transcript_name=BPY2B-203;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602770.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602770.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001802;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001802;transcript_name=HG003_chrY_T0001802;gene_name=BPY2B;ID=exon:HG003_chrY_T0001802:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23908785	23911849	.	-	.	source_transcript=ENST00000602770.5;source_transcript_name=BPY2B-203;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602770.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602770.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001802;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001802;transcript_name=HG003_chrY_T0001802;gene_name=BPY2B;ID=intron:HG003_chrY_T0001802:1;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23911850	23911972	.	-	.	source_transcript=ENST00000602770.5;source_transcript_name=BPY2B-203;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602770.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602770.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001802;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001802;transcript_name=HG003_chrY_T0001802;gene_name=BPY2B;ID=exon:HG003_chrY_T0001802:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23911973	23912324	.	-	.	source_transcript=ENST00000602770.5;source_transcript_name=BPY2B-203;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602770.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602770.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001802;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001802;transcript_name=HG003_chrY_T0001802;gene_name=BPY2B;ID=intron:HG003_chrY_T0001802:2;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23912325	23912393	.	-	.	source_transcript=ENST00000602770.5;source_transcript_name=BPY2B-203;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602770.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602770.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001802;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001802;transcript_name=HG003_chrY_T0001802;gene_name=BPY2B;ID=exon:HG003_chrY_T0001802:3;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23912394	23922566	.	-	.	source_transcript=ENST00000602770.5;source_transcript_name=BPY2B-203;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602770.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602770.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001802;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001802;transcript_name=HG003_chrY_T0001802;gene_name=BPY2B;ID=intron:HG003_chrY_T0001802:3;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23922567	23922722	.	-	.	source_transcript=ENST00000602770.5;source_transcript_name=BPY2B-203;source_gene=ENSG00000183795.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183795.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602770.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602770.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2B;alternative_source_transcripts=ENST00000602732.5;transcript_id=HG003_chrY_T0001802;gene_id=HG003_chrY_G0000635;Parent=HG003_chrY_T0001802;transcript_name=HG003_chrY_T0001802;gene_name=BPY2B;ID=exon:HG003_chrY_T0001802:4;Name=BPY2B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	23923257	23960056	.	-	.	source_gene_common_name=TTTY4B;source_gene=ENSG00000235412.1;gene_id=HG003_chrY_G0000636;gene_biotype=lncRNA;gene_name=TTTY4B;gene_sources=liftoff;ID=HG003_chrY_G0000636;Name=TTTY4B
HG003_chrY	CAT	transcript	23923257	23960056	1000	-	.	source_transcript=ENST00000420149.1;source_transcript_name=TTTY4B-201;source_gene=ENSG00000235412.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235412.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000420149.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420149.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=HG003_chrY_T0001803;gene_id=HG003_chrY_G0000636;Parent=HG003_chrY_G0000636;transcript_name=HG003_chrY_T0001803;gene_name=TTTY4B;ID=HG003_chrY_T0001803;Name=TTTY4B
HG003_chrY	CAT	exon	23923257	23924257	.	-	.	source_transcript=ENST00000420149.1;source_transcript_name=TTTY4B-201;source_gene=ENSG00000235412.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235412.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000420149.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420149.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=HG003_chrY_T0001803;gene_id=HG003_chrY_G0000636;Parent=HG003_chrY_T0001803;transcript_name=HG003_chrY_T0001803;gene_name=TTTY4B;ID=exon:HG003_chrY_T0001803:0;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23924258	23930907	.	-	.	source_transcript=ENST00000420149.1;source_transcript_name=TTTY4B-201;source_gene=ENSG00000235412.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235412.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000420149.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420149.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=HG003_chrY_T0001803;gene_id=HG003_chrY_G0000636;Parent=HG003_chrY_T0001803;transcript_name=HG003_chrY_T0001803;gene_name=TTTY4B;ID=intron:HG003_chrY_T0001803:0;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23930908	23931015	.	-	.	source_transcript=ENST00000420149.1;source_transcript_name=TTTY4B-201;source_gene=ENSG00000235412.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235412.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000420149.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420149.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=HG003_chrY_T0001803;gene_id=HG003_chrY_G0000636;Parent=HG003_chrY_T0001803;transcript_name=HG003_chrY_T0001803;gene_name=TTTY4B;ID=exon:HG003_chrY_T0001803:1;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23931016	23932819	.	-	.	source_transcript=ENST00000420149.1;source_transcript_name=TTTY4B-201;source_gene=ENSG00000235412.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235412.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000420149.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420149.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=HG003_chrY_T0001803;gene_id=HG003_chrY_G0000636;Parent=HG003_chrY_T0001803;transcript_name=HG003_chrY_T0001803;gene_name=TTTY4B;ID=intron:HG003_chrY_T0001803:1;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23932820	23932895	.	-	.	source_transcript=ENST00000420149.1;source_transcript_name=TTTY4B-201;source_gene=ENSG00000235412.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235412.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000420149.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420149.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=HG003_chrY_T0001803;gene_id=HG003_chrY_G0000636;Parent=HG003_chrY_T0001803;transcript_name=HG003_chrY_T0001803;gene_name=TTTY4B;ID=exon:HG003_chrY_T0001803:2;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	23932896	23959895	.	-	.	source_transcript=ENST00000420149.1;source_transcript_name=TTTY4B-201;source_gene=ENSG00000235412.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235412.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000420149.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420149.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=HG003_chrY_T0001803;gene_id=HG003_chrY_G0000636;Parent=HG003_chrY_T0001803;transcript_name=HG003_chrY_T0001803;gene_name=TTTY4B;ID=intron:HG003_chrY_T0001803:2;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	23959896	23960056	.	-	.	source_transcript=ENST00000420149.1;source_transcript_name=TTTY4B-201;source_gene=ENSG00000235412.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000235412.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000420149.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420149.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4B;transcript_id=HG003_chrY_T0001803;gene_id=HG003_chrY_G0000636;Parent=HG003_chrY_T0001803;transcript_name=HG003_chrY_T0001803;gene_name=TTTY4B;ID=exon:HG003_chrY_T0001803:3;Name=TTTY4B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24028757	24029999	.	+	.	source_gene_common_name=ZNF736P12Y;source_gene=ENSG00000232003.2;gene_id=HG003_chrY_G0000637;gene_biotype=processed_pseudogene;gene_name=ZNF736P12Y;gene_sources=liftoff;ID=HG003_chrY_G0000637;Name=ZNF736P12Y
HG003_chrY	CAT	transcript	24028757	24029999	1000	+	.	source_transcript=ENST00000443152.1;source_transcript_name=ZNF736P12Y-201;source_gene=ENSG00000232003.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232003.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000443152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443152.1;transcript_score=199.678;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P12Y;transcript_id=HG003_chrY_T0001804;gene_id=HG003_chrY_G0000637;Parent=HG003_chrY_G0000637;transcript_name=HG003_chrY_T0001804;gene_name=ZNF736P12Y;ID=HG003_chrY_T0001804;Name=ZNF736P12Y
HG003_chrY	CAT	exon	24028757	24029999	.	+	.	source_transcript=ENST00000443152.1;source_transcript_name=ZNF736P12Y-201;source_gene=ENSG00000232003.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232003.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000443152.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443152.1;transcript_score=199.678;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P12Y;transcript_id=HG003_chrY_T0001804;gene_id=HG003_chrY_G0000637;Parent=HG003_chrY_T0001804;transcript_name=HG003_chrY_T0001804;gene_name=ZNF736P12Y;ID=exon:HG003_chrY_T0001804:0;Name=ZNF736P12Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24034680	24035402	.	+	.	source_gene_common_name=ENSG00000276829;source_gene=ENSG00000276829.1;alternative_source_transcripts=ENST00000613297.1;gene_id=HG003_chrY_G0000638;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000276829;gene_sources=liftoff;ID=HG003_chrY_G0000638;Name=ENSG00000276829
HG003_chrY	CAT	transcript	24034680	24035402	1000	+	.	source_transcript=ENST00000613297.1;source_transcript_name=ENST00000613297;source_gene=ENSG00000276829.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000276829.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613297.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000276829;alternative_source_transcripts=ENST00000613297.1;transcript_id=HG003_chrY_T0001805;gene_id=HG003_chrY_G0000638;Parent=HG003_chrY_G0000638;transcript_name=HG003_chrY_T0001805;gene_name=ENSG00000276829;ID=HG003_chrY_T0001805;Name=ENSG00000276829
HG003_chrY	CAT	exon	24034680	24034970	.	+	.	source_transcript=ENST00000613297.1;source_transcript_name=ENST00000613297;source_gene=ENSG00000276829.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000276829.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000276829;alternative_source_transcripts=ENST00000613297.1;transcript_id=HG003_chrY_T0001805;gene_id=HG003_chrY_G0000638;Parent=HG003_chrY_T0001805;transcript_name=HG003_chrY_T0001805;gene_name=ENSG00000276829;ID=exon:HG003_chrY_T0001805:0;Name=ENSG00000276829;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24034971	24035241	.	+	.	source_transcript=ENST00000613297.1;source_transcript_name=ENST00000613297;source_gene=ENSG00000276829.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000276829.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000276829;alternative_source_transcripts=ENST00000613297.1;transcript_id=HG003_chrY_T0001805;gene_id=HG003_chrY_G0000638;Parent=HG003_chrY_T0001805;transcript_name=HG003_chrY_T0001805;gene_name=ENSG00000276829;ID=intron:HG003_chrY_T0001805:0;Name=ENSG00000276829;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24035242	24035402	.	+	.	source_transcript=ENST00000613297.1;source_transcript_name=ENST00000613297;source_gene=ENSG00000276829.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000276829.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000613297.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000613297.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000276829;alternative_source_transcripts=ENST00000613297.1;transcript_id=HG003_chrY_T0001805;gene_id=HG003_chrY_G0000638;Parent=HG003_chrY_T0001805;transcript_name=HG003_chrY_T0001805;gene_name=ENSG00000276829;ID=exon:HG003_chrY_T0001805:1;Name=ENSG00000276829;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24043800	24044932	.	-	.	source_gene_common_name=TTTY17B;source_gene=ENSG00000227439.1;alternative_source_transcripts=ENST00000416110.1;gene_id=HG003_chrY_G0000639;gene_biotype=lncRNA;gene_name=TTTY17B;gene_sources=liftoff;ID=HG003_chrY_G0000639;Name=TTTY17B
HG003_chrY	CAT	transcript	24043800	24044932	1000	-	.	source_transcript=ENST00000441906.1;source_transcript_name=TTTY17B-201;source_gene=ENSG00000227439.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000227439.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441906.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441906.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17B;alternative_source_transcripts=ENST00000416110.1;transcript_id=HG003_chrY_T0001806;gene_id=HG003_chrY_G0000639;Parent=HG003_chrY_G0000639;transcript_name=HG003_chrY_T0001806;gene_name=TTTY17B;ID=HG003_chrY_T0001806;Name=TTTY17B
HG003_chrY	CAT	exon	24043800	24043905	.	-	.	source_transcript=ENST00000441906.1;source_transcript_name=TTTY17B-201;source_gene=ENSG00000227439.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000227439.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441906.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441906.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17B;alternative_source_transcripts=ENST00000416110.1;transcript_id=HG003_chrY_T0001806;gene_id=HG003_chrY_G0000639;Parent=HG003_chrY_T0001806;transcript_name=HG003_chrY_T0001806;gene_name=TTTY17B;ID=exon:HG003_chrY_T0001806:0;Name=TTTY17B;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24043906	24044872	.	-	.	source_transcript=ENST00000441906.1;source_transcript_name=TTTY17B-201;source_gene=ENSG00000227439.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000227439.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441906.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441906.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17B;alternative_source_transcripts=ENST00000416110.1;transcript_id=HG003_chrY_T0001806;gene_id=HG003_chrY_G0000639;Parent=HG003_chrY_T0001806;transcript_name=HG003_chrY_T0001806;gene_name=TTTY17B;ID=intron:HG003_chrY_T0001806:0;Name=TTTY17B;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24044873	24044932	.	-	.	source_transcript=ENST00000441906.1;source_transcript_name=TTTY17B-201;source_gene=ENSG00000227439.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000227439.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000441906.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441906.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17B;alternative_source_transcripts=ENST00000416110.1;transcript_id=HG003_chrY_T0001806;gene_id=HG003_chrY_G0000639;Parent=HG003_chrY_T0001806;transcript_name=HG003_chrY_T0001806;gene_name=TTTY17B;ID=exon:HG003_chrY_T0001806:1;Name=TTTY17B;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24074323	24079413	.	+	.	source_gene_common_name=ENSG00000308317;source_gene=ENSG00000308317.1;gene_id=HG003_chrY_G0000640;gene_biotype=lncRNA;gene_name=ENSG00000308317;gene_sources=liftoff;ID=HG003_chrY_G0000640;Name=ENSG00000308317
HG003_chrY	CAT	transcript	24074323	24079413	1000	+	.	source_transcript=ENST00000833217.1;source_transcript_name=ENST00000833217;source_gene=ENSG00000308317.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308317.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000833217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000833217.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308317;transcript_id=HG003_chrY_T0001807;gene_id=HG003_chrY_G0000640;Parent=HG003_chrY_G0000640;transcript_name=HG003_chrY_T0001807;gene_name=ENSG00000308317;ID=HG003_chrY_T0001807;Name=ENSG00000308317
HG003_chrY	CAT	exon	24074323	24074419	.	+	.	source_transcript=ENST00000833217.1;source_transcript_name=ENST00000833217;source_gene=ENSG00000308317.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308317.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000833217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000833217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308317;transcript_id=HG003_chrY_T0001807;gene_id=HG003_chrY_G0000640;Parent=HG003_chrY_T0001807;transcript_name=HG003_chrY_T0001807;gene_name=ENSG00000308317;ID=exon:HG003_chrY_T0001807:0;Name=ENSG00000308317;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24074420	24079071	.	+	.	source_transcript=ENST00000833217.1;source_transcript_name=ENST00000833217;source_gene=ENSG00000308317.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308317.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000833217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000833217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308317;transcript_id=HG003_chrY_T0001807;gene_id=HG003_chrY_G0000640;Parent=HG003_chrY_T0001807;transcript_name=HG003_chrY_T0001807;gene_name=ENSG00000308317;ID=intron:HG003_chrY_T0001807:0;Name=ENSG00000308317;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24079072	24079413	.	+	.	source_transcript=ENST00000833217.1;source_transcript_name=ENST00000833217;source_gene=ENSG00000308317.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000308317.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000833217.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000833217.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000308317;transcript_id=HG003_chrY_T0001807;gene_id=HG003_chrY_G0000640;Parent=HG003_chrY_T0001807;transcript_name=HG003_chrY_T0001807;gene_name=ENSG00000308317;ID=exon:HG003_chrY_T0001807:1;Name=ENSG00000308317;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24126738	24133668	.	+	.	source_gene_common_name=RBMY2XP;source_gene=ENSG00000234399.1;gene_id=HG003_chrY_G0000641;gene_biotype=unprocessed_pseudogene;gene_name=RBMY2XP;gene_sources=liftoff;ID=HG003_chrY_G0000641;Name=RBMY2XP
HG003_chrY	CAT	transcript	24126738	24133668	1000	+	.	source_transcript=ENST00000447471.1;source_transcript_name=RBMY2XP-201;source_gene=ENSG00000234399.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234399.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447471.1;transcript_score=299.777;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2XP;transcript_id=HG003_chrY_T0001808;gene_id=HG003_chrY_G0000641;Parent=HG003_chrY_G0000641;transcript_name=HG003_chrY_T0001808;gene_name=RBMY2XP;ID=HG003_chrY_T0001808;Name=RBMY2XP
HG003_chrY	CAT	exon	24126738	24126846	.	+	.	source_transcript=ENST00000447471.1;source_transcript_name=RBMY2XP-201;source_gene=ENSG00000234399.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234399.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447471.1;transcript_score=299.777;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2XP;transcript_id=HG003_chrY_T0001808;gene_id=HG003_chrY_G0000641;Parent=HG003_chrY_T0001808;transcript_name=HG003_chrY_T0001808;gene_name=RBMY2XP;ID=exon:HG003_chrY_T0001808:0;Name=RBMY2XP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24126847	24127262	.	+	.	source_transcript=ENST00000447471.1;source_transcript_name=RBMY2XP-201;source_gene=ENSG00000234399.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234399.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447471.1;transcript_score=299.777;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2XP;transcript_id=HG003_chrY_T0001808;gene_id=HG003_chrY_G0000641;Parent=HG003_chrY_T0001808;transcript_name=HG003_chrY_T0001808;gene_name=RBMY2XP;ID=intron:HG003_chrY_T0001808:0;Name=RBMY2XP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24127263	24127364	.	+	.	source_transcript=ENST00000447471.1;source_transcript_name=RBMY2XP-201;source_gene=ENSG00000234399.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234399.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447471.1;transcript_score=299.777;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2XP;transcript_id=HG003_chrY_T0001808;gene_id=HG003_chrY_G0000641;Parent=HG003_chrY_T0001808;transcript_name=HG003_chrY_T0001808;gene_name=RBMY2XP;ID=exon:HG003_chrY_T0001808:1;Name=RBMY2XP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24127365	24129752	.	+	.	source_transcript=ENST00000447471.1;source_transcript_name=RBMY2XP-201;source_gene=ENSG00000234399.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234399.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447471.1;transcript_score=299.777;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2XP;transcript_id=HG003_chrY_T0001808;gene_id=HG003_chrY_G0000641;Parent=HG003_chrY_T0001808;transcript_name=HG003_chrY_T0001808;gene_name=RBMY2XP;ID=intron:HG003_chrY_T0001808:1;Name=RBMY2XP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24129753	24129934	.	+	.	source_transcript=ENST00000447471.1;source_transcript_name=RBMY2XP-201;source_gene=ENSG00000234399.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234399.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447471.1;transcript_score=299.777;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2XP;transcript_id=HG003_chrY_T0001808;gene_id=HG003_chrY_G0000641;Parent=HG003_chrY_T0001808;transcript_name=HG003_chrY_T0001808;gene_name=RBMY2XP;ID=exon:HG003_chrY_T0001808:2;Name=RBMY2XP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24129935	24132670	.	+	.	source_transcript=ENST00000447471.1;source_transcript_name=RBMY2XP-201;source_gene=ENSG00000234399.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234399.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447471.1;transcript_score=299.777;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2XP;transcript_id=HG003_chrY_T0001808;gene_id=HG003_chrY_G0000641;Parent=HG003_chrY_T0001808;transcript_name=HG003_chrY_T0001808;gene_name=RBMY2XP;ID=intron:HG003_chrY_T0001808:2;Name=RBMY2XP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24132671	24132781	.	+	.	source_transcript=ENST00000447471.1;source_transcript_name=RBMY2XP-201;source_gene=ENSG00000234399.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234399.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447471.1;transcript_score=299.777;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2XP;transcript_id=HG003_chrY_T0001808;gene_id=HG003_chrY_G0000641;Parent=HG003_chrY_T0001808;transcript_name=HG003_chrY_T0001808;gene_name=RBMY2XP;ID=exon:HG003_chrY_T0001808:3;Name=RBMY2XP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24132782	24132862	.	+	.	source_transcript=ENST00000447471.1;source_transcript_name=RBMY2XP-201;source_gene=ENSG00000234399.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234399.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447471.1;transcript_score=299.777;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2XP;transcript_id=HG003_chrY_T0001808;gene_id=HG003_chrY_G0000641;Parent=HG003_chrY_T0001808;transcript_name=HG003_chrY_T0001808;gene_name=RBMY2XP;ID=intron:HG003_chrY_T0001808:3;Name=RBMY2XP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24132863	24132951	.	+	.	source_transcript=ENST00000447471.1;source_transcript_name=RBMY2XP-201;source_gene=ENSG00000234399.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234399.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447471.1;transcript_score=299.777;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2XP;transcript_id=HG003_chrY_T0001808;gene_id=HG003_chrY_G0000641;Parent=HG003_chrY_T0001808;transcript_name=HG003_chrY_T0001808;gene_name=RBMY2XP;ID=exon:HG003_chrY_T0001808:4;Name=RBMY2XP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24132952	24133366	.	+	.	source_transcript=ENST00000447471.1;source_transcript_name=RBMY2XP-201;source_gene=ENSG00000234399.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234399.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447471.1;transcript_score=299.777;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2XP;transcript_id=HG003_chrY_T0001808;gene_id=HG003_chrY_G0000641;Parent=HG003_chrY_T0001808;transcript_name=HG003_chrY_T0001808;gene_name=RBMY2XP;ID=intron:HG003_chrY_T0001808:4;Name=RBMY2XP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24133367	24133668	.	+	.	source_transcript=ENST00000447471.1;source_transcript_name=RBMY2XP-201;source_gene=ENSG00000234399.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234399.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447471.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447471.1;transcript_score=299.777;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2XP;transcript_id=HG003_chrY_T0001808;gene_id=HG003_chrY_G0000641;Parent=HG003_chrY_T0001808;transcript_name=HG003_chrY_T0001808;gene_name=RBMY2XP;ID=exon:HG003_chrY_T0001808:5;Name=RBMY2XP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24167883	24167957	.	+	.	source_gene_common_name=ENSG00000279274;source_gene=ENSG00000279274.2;gene_id=HG003_chrY_G0000642;gene_biotype=processed_pseudogene;gene_name=ENSG00000279274;gene_sources=liftoff;ID=HG003_chrY_G0000642;Name=ENSG00000279274
HG003_chrY	CAT	transcript	24167883	24167957	1000	+	.	source_transcript=ENST00000624575.2;source_transcript_name=ENST00000624575;source_gene=ENSG00000279274.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000279274.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000624575.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000624575.2;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000279274;transcript_id=HG003_chrY_T0001809;gene_id=HG003_chrY_G0000642;Parent=HG003_chrY_G0000642;transcript_name=HG003_chrY_T0001809;gene_name=ENSG00000279274;ID=HG003_chrY_T0001809;Name=ENSG00000279274
HG003_chrY	CAT	exon	24167883	24167957	.	+	.	source_transcript=ENST00000624575.2;source_transcript_name=ENST00000624575;source_gene=ENSG00000279274.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000279274.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000624575.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000624575.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000279274;transcript_id=HG003_chrY_T0001809;gene_id=HG003_chrY_G0000642;Parent=HG003_chrY_T0001809;transcript_name=HG003_chrY_T0001809;gene_name=ENSG00000279274;ID=exon:HG003_chrY_T0001809:0;Name=ENSG00000279274;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24208655	24217737	.	+	.	source_gene_common_name=ENSG00000306111;source_gene=ENSG00000306111.1;gene_id=HG003_chrY_G0000643;gene_biotype=lncRNA;gene_name=ENSG00000306111;gene_sources=liftoff;ID=HG003_chrY_G0000643;Name=ENSG00000306111
HG003_chrY	CAT	transcript	24208655	24217737	1000	+	.	source_transcript=ENST00000815376.1;source_transcript_name=ENST00000815376;source_gene=ENSG00000306111.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306111.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000815376.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000815376.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306111;transcript_id=HG003_chrY_T0001810;gene_id=HG003_chrY_G0000643;Parent=HG003_chrY_G0000643;transcript_name=HG003_chrY_T0001810;gene_name=ENSG00000306111;ID=HG003_chrY_T0001810;Name=ENSG00000306111
HG003_chrY	CAT	exon	24208655	24208828	.	+	.	source_transcript=ENST00000815376.1;source_transcript_name=ENST00000815376;source_gene=ENSG00000306111.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306111.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000815376.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000815376.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306111;transcript_id=HG003_chrY_T0001810;gene_id=HG003_chrY_G0000643;Parent=HG003_chrY_T0001810;transcript_name=HG003_chrY_T0001810;gene_name=ENSG00000306111;ID=exon:HG003_chrY_T0001810:0;Name=ENSG00000306111;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24208829	24216644	.	+	.	source_transcript=ENST00000815376.1;source_transcript_name=ENST00000815376;source_gene=ENSG00000306111.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306111.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000815376.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000815376.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306111;transcript_id=HG003_chrY_T0001810;gene_id=HG003_chrY_G0000643;Parent=HG003_chrY_T0001810;transcript_name=HG003_chrY_T0001810;gene_name=ENSG00000306111;ID=intron:HG003_chrY_T0001810:0;Name=ENSG00000306111;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24216645	24217737	.	+	.	source_transcript=ENST00000815376.1;source_transcript_name=ENST00000815376;source_gene=ENSG00000306111.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306111.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000815376.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000815376.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306111;transcript_id=HG003_chrY_T0001810;gene_id=HG003_chrY_G0000643;Parent=HG003_chrY_T0001810;transcript_name=HG003_chrY_T0001810;gene_name=ENSG00000306111;ID=exon:HG003_chrY_T0001810:1;Name=ENSG00000306111;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24208732	24209512	1000	+	.	source_transcript=ENST00000815377.1;source_transcript_name=ENST00000815377;source_gene=ENSG00000306111.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306111.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000815377.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000815377.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306111;transcript_id=HG003_chrY_T0001811;gene_id=HG003_chrY_G0000643;Parent=HG003_chrY_G0000643;transcript_name=HG003_chrY_T0001811;gene_name=ENSG00000306111;ID=HG003_chrY_T0001811;Name=ENSG00000306111
HG003_chrY	CAT	exon	24208732	24208828	.	+	.	source_transcript=ENST00000815377.1;source_transcript_name=ENST00000815377;source_gene=ENSG00000306111.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306111.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000815377.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000815377.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306111;transcript_id=HG003_chrY_T0001811;gene_id=HG003_chrY_G0000643;Parent=HG003_chrY_T0001811;transcript_name=HG003_chrY_T0001811;gene_name=ENSG00000306111;ID=exon:HG003_chrY_T0001811:0;Name=ENSG00000306111;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24208829	24209272	.	+	.	source_transcript=ENST00000815377.1;source_transcript_name=ENST00000815377;source_gene=ENSG00000306111.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306111.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000815377.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000815377.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306111;transcript_id=HG003_chrY_T0001811;gene_id=HG003_chrY_G0000643;Parent=HG003_chrY_T0001811;transcript_name=HG003_chrY_T0001811;gene_name=ENSG00000306111;ID=intron:HG003_chrY_T0001811:0;Name=ENSG00000306111;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24209273	24209512	.	+	.	source_transcript=ENST00000815377.1;source_transcript_name=ENST00000815377;source_gene=ENSG00000306111.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306111.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000815377.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000815377.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306111;transcript_id=HG003_chrY_T0001811;gene_id=HG003_chrY_G0000643;Parent=HG003_chrY_T0001811;transcript_name=HG003_chrY_T0001811;gene_name=ENSG00000306111;ID=exon:HG003_chrY_T0001811:1;Name=ENSG00000306111;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24247077	24247245	.	-	.	source_gene_common_name=SEPTIN14P22;source_gene=ENSG00000248792.2;gene_id=HG003_chrY_G0000644;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=SEPTIN14P22;gene_sources=liftoff;ID=HG003_chrY_G0000644;Name=SEPTIN14P22
HG003_chrY	CAT	transcript	24247077	24247245	1000	-	.	source_transcript=ENST00000509776.2;source_transcript_name=SEPTIN14P22-201;source_gene=ENSG00000248792.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000248792.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000509776.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000509776.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P22;transcript_id=HG003_chrY_T0001812;gene_id=HG003_chrY_G0000644;Parent=HG003_chrY_G0000644;transcript_name=HG003_chrY_T0001812;gene_name=SEPTIN14P22;ID=HG003_chrY_T0001812;Name=SEPTIN14P22
HG003_chrY	CAT	exon	24247077	24247245	.	-	.	source_transcript=ENST00000509776.2;source_transcript_name=SEPTIN14P22-201;source_gene=ENSG00000248792.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000248792.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000509776.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000509776.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P22;transcript_id=HG003_chrY_T0001812;gene_id=HG003_chrY_G0000644;Parent=HG003_chrY_T0001812;transcript_name=HG003_chrY_T0001812;gene_name=SEPTIN14P22;ID=exon:HG003_chrY_T0001812:0;Name=SEPTIN14P22;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24249152	24251971	.	+	.	source_gene_common_name=CICP1;source_gene=ENSG00000233652.1;gene_id=HG003_chrY_G0000645;gene_biotype=processed_pseudogene;gene_name=CICP1;gene_sources=liftoff;ID=HG003_chrY_G0000645;Name=CICP1
HG003_chrY	CAT	transcript	24249152	24251971	1000	+	.	source_transcript=ENST00000416803.1;source_transcript_name=CICP1-201;source_gene=ENSG00000233652.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233652.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000416803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416803.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP1;transcript_id=HG003_chrY_T0001813;gene_id=HG003_chrY_G0000645;Parent=HG003_chrY_G0000645;transcript_name=HG003_chrY_T0001813;gene_name=CICP1;ID=HG003_chrY_T0001813;Name=CICP1
HG003_chrY	CAT	exon	24249152	24251434	.	+	.	source_transcript=ENST00000416803.1;source_transcript_name=CICP1-201;source_gene=ENSG00000233652.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233652.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000416803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416803.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP1;transcript_id=HG003_chrY_T0001813;gene_id=HG003_chrY_G0000645;Parent=HG003_chrY_T0001813;transcript_name=HG003_chrY_T0001813;gene_name=CICP1;ID=exon:HG003_chrY_T0001813:0;Name=CICP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24251435	24251844	.	+	.	source_transcript=ENST00000416803.1;source_transcript_name=CICP1-201;source_gene=ENSG00000233652.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233652.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000416803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416803.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP1;transcript_id=HG003_chrY_T0001813;gene_id=HG003_chrY_G0000645;Parent=HG003_chrY_T0001813;transcript_name=HG003_chrY_T0001813;gene_name=CICP1;ID=intron:HG003_chrY_T0001813:0;Name=CICP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24251845	24251971	.	+	.	source_transcript=ENST00000416803.1;source_transcript_name=CICP1-201;source_gene=ENSG00000233652.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233652.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000416803.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416803.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP1;transcript_id=HG003_chrY_T0001813;gene_id=HG003_chrY_G0000645;Parent=HG003_chrY_T0001813;transcript_name=HG003_chrY_T0001813;gene_name=CICP1;ID=exon:HG003_chrY_T0001813:1;Name=CICP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24253314	24254217	.	-	.	source_gene_common_name=LINC00265-3P;source_gene=ENSG00000233944.1;gene_id=HG003_chrY_G0000646;gene_biotype=processed_pseudogene;gene_name=LINC00265-3P;gene_sources=liftoff;ID=HG003_chrY_G0000646;Name=LINC00265-3P
HG003_chrY	CAT	transcript	24253314	24254217	1000	-	.	source_transcript=ENST00000447588.1;source_transcript_name=LINC00265-3P-201;source_gene=ENSG00000233944.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233944.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000447588.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447588.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00265-3P;transcript_id=HG003_chrY_T0001814;gene_id=HG003_chrY_G0000646;Parent=HG003_chrY_G0000646;transcript_name=HG003_chrY_T0001814;gene_name=LINC00265-3P;ID=HG003_chrY_T0001814;Name=LINC00265-3P
HG003_chrY	CAT	exon	24253314	24254217	.	-	.	source_transcript=ENST00000447588.1;source_transcript_name=LINC00265-3P-201;source_gene=ENSG00000233944.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233944.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000447588.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447588.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00265-3P;transcript_id=HG003_chrY_T0001814;gene_id=HG003_chrY_G0000646;Parent=HG003_chrY_T0001814;transcript_name=HG003_chrY_T0001814;gene_name=LINC00265-3P;ID=exon:HG003_chrY_T0001814:0;Name=LINC00265-3P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24291320	24297480	.	+	.	source_gene_common_name=UBE2Q2P5Y;source_gene=ENSG00000223636.1;gene_id=HG003_chrY_G0000647;gene_biotype=unprocessed_pseudogene;gene_name=UBE2Q2P5Y;gene_sources=liftoff;ID=HG003_chrY_G0000647;Name=UBE2Q2P5Y
HG003_chrY	CAT	transcript	24291320	24297480	1000	+	.	source_transcript=ENST00000413867.1;source_transcript_name=UBE2Q2P5Y-201;source_gene=ENSG00000223636.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223636.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413867.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413867.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UBE2Q2P5Y;transcript_id=HG003_chrY_T0001815;gene_id=HG003_chrY_G0000647;Parent=HG003_chrY_G0000647;transcript_name=HG003_chrY_T0001815;gene_name=UBE2Q2P5Y;ID=HG003_chrY_T0001815;Name=UBE2Q2P5Y
HG003_chrY	CAT	exon	24291320	24291421	.	+	.	source_transcript=ENST00000413867.1;source_transcript_name=UBE2Q2P5Y-201;source_gene=ENSG00000223636.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223636.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413867.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413867.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UBE2Q2P5Y;transcript_id=HG003_chrY_T0001815;gene_id=HG003_chrY_G0000647;Parent=HG003_chrY_T0001815;transcript_name=HG003_chrY_T0001815;gene_name=UBE2Q2P5Y;ID=exon:HG003_chrY_T0001815:0;Name=UBE2Q2P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24291422	24297375	.	+	.	source_transcript=ENST00000413867.1;source_transcript_name=UBE2Q2P5Y-201;source_gene=ENSG00000223636.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223636.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413867.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413867.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UBE2Q2P5Y;transcript_id=HG003_chrY_T0001815;gene_id=HG003_chrY_G0000647;Parent=HG003_chrY_T0001815;transcript_name=HG003_chrY_T0001815;gene_name=UBE2Q2P5Y;ID=intron:HG003_chrY_T0001815:0;Name=UBE2Q2P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24297376	24297480	.	+	.	source_transcript=ENST00000413867.1;source_transcript_name=UBE2Q2P5Y-201;source_gene=ENSG00000223636.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223636.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000413867.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413867.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UBE2Q2P5Y;transcript_id=HG003_chrY_T0001815;gene_id=HG003_chrY_G0000647;Parent=HG003_chrY_T0001815;transcript_name=HG003_chrY_T0001815;gene_name=UBE2Q2P5Y;ID=exon:HG003_chrY_T0001815:1;Name=UBE2Q2P5Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24314725	24320737	.	+	.	source_gene_common_name=GOLGA2P3Y;source_gene=ENSG00000172297.7;gene_id=HG003_chrY_G0000648;gene_biotype=unprocessed_pseudogene;gene_name=GOLGA2P3Y;gene_sources=liftoff;ID=HG003_chrY_G0000648;Name=GOLGA2P3Y
HG003_chrY	CAT	transcript	24314725	24320737	1000	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_G0000648;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=HG003_chrY_T0001816;Name=GOLGA2P3Y
HG003_chrY	CAT	exon	24314725	24314844	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:0;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24314845	24315457	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:0;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24315458	24315517	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:1;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24315518	24315703	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:1;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24315704	24315782	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:2;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24315783	24316902	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:2;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24316903	24317252	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:3;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24317253	24317550	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:3;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24317551	24317608	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:4;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24317609	24318638	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:4;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24318639	24318708	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:5;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24318709	24318727	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:5;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24318728	24318888	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:6;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24318889	24318964	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:6;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24318965	24319039	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:7;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24319040	24319459	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:7;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24319460	24319548	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:8;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24319549	24319803	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:8;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24319804	24319992	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:9;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24319993	24320081	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:9;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24320082	24320174	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:10;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24320175	24320256	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:10;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24320257	24320347	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:11;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24320348	24320429	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:11;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24320430	24320585	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:12;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24320586	24320675	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=intron:HG003_chrY_T0001816:12;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24320676	24320737	.	+	.	source_transcript=ENST00000416946.1;source_transcript_name=GOLGA2P3Y-201;source_gene=ENSG00000172297.7;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000172297.7;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000416946.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416946.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P3Y;transcript_id=HG003_chrY_T0001816;gene_id=HG003_chrY_G0000648;Parent=HG003_chrY_T0001816;transcript_name=HG003_chrY_T0001816;gene_name=GOLGA2P3Y;ID=exon:HG003_chrY_T0001816:13;Name=GOLGA2P3Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24319091	24319349	.	+	.	source_gene_common_name=RN7SL725P;source_gene=ENSG00000278242.1;gene_id=HG003_chrY_G0000649;gene_biotype=misc_RNA;gene_name=RN7SL725P;gene_sources=liftoff;ID=HG003_chrY_G0000649;Name=RN7SL725P
HG003_chrY	CAT	transcript	24319091	24319349	1000	+	.	source_transcript=ENST00000606439.2;source_transcript_name=RN7SL725P-201;source_gene=ENSG00000278242.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000278242.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000606439.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000606439.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RN7SL725P;transcript_id=HG003_chrY_T0001817;gene_id=HG003_chrY_G0000649;Parent=HG003_chrY_G0000649;transcript_name=HG003_chrY_T0001817;gene_name=RN7SL725P;ID=HG003_chrY_T0001817;Name=RN7SL725P
HG003_chrY	CAT	exon	24319091	24319349	.	+	.	source_transcript=ENST00000606439.2;source_transcript_name=RN7SL725P-201;source_gene=ENSG00000278242.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000278242.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000606439.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000606439.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RN7SL725P;transcript_id=HG003_chrY_T0001817;gene_id=HG003_chrY_G0000649;Parent=HG003_chrY_T0001817;transcript_name=HG003_chrY_T0001817;gene_name=RN7SL725P;ID=exon:HG003_chrY_T0001817:0;Name=RN7SL725P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24324171	24333783	.	+	.	source_gene_common_name=ENSG00000284071;source_gene=ENSG00000284071.1;gene_id=HG003_chrY_G0000650;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000284071;gene_sources=liftoff;ID=HG003_chrY_G0000650;Name=ENSG00000284071
HG003_chrY	CAT	transcript	24324171	24333783	1000	+	.	source_transcript=ENST00000624333.2;source_transcript_name=ENST00000624333;source_gene=ENSG00000284071.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000284071.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000624333.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000624333.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000284071;transcript_id=HG003_chrY_T0001818;gene_id=HG003_chrY_G0000650;Parent=HG003_chrY_G0000650;transcript_name=HG003_chrY_T0001818;gene_name=ENSG00000284071;ID=HG003_chrY_T0001818;Name=ENSG00000284071
HG003_chrY	CAT	exon	24324171	24324255	.	+	.	source_transcript=ENST00000624333.2;source_transcript_name=ENST00000624333;source_gene=ENSG00000284071.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000284071.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000624333.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000624333.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000284071;transcript_id=HG003_chrY_T0001818;gene_id=HG003_chrY_G0000650;Parent=HG003_chrY_T0001818;transcript_name=HG003_chrY_T0001818;gene_name=ENSG00000284071;ID=exon:HG003_chrY_T0001818:0;Name=ENSG00000284071;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24324256	24325676	.	+	.	source_transcript=ENST00000624333.2;source_transcript_name=ENST00000624333;source_gene=ENSG00000284071.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000284071.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000624333.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000624333.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000284071;transcript_id=HG003_chrY_T0001818;gene_id=HG003_chrY_G0000650;Parent=HG003_chrY_T0001818;transcript_name=HG003_chrY_T0001818;gene_name=ENSG00000284071;ID=intron:HG003_chrY_T0001818:0;Name=ENSG00000284071;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24325677	24325826	.	+	.	source_transcript=ENST00000624333.2;source_transcript_name=ENST00000624333;source_gene=ENSG00000284071.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000284071.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000624333.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000624333.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000284071;transcript_id=HG003_chrY_T0001818;gene_id=HG003_chrY_G0000650;Parent=HG003_chrY_T0001818;transcript_name=HG003_chrY_T0001818;gene_name=ENSG00000284071;ID=exon:HG003_chrY_T0001818:1;Name=ENSG00000284071;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24325827	24333621	.	+	.	source_transcript=ENST00000624333.2;source_transcript_name=ENST00000624333;source_gene=ENSG00000284071.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000284071.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000624333.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000624333.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000284071;transcript_id=HG003_chrY_T0001818;gene_id=HG003_chrY_G0000650;Parent=HG003_chrY_T0001818;transcript_name=HG003_chrY_T0001818;gene_name=ENSG00000284071;ID=intron:HG003_chrY_T0001818:1;Name=ENSG00000284071;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24333622	24333783	.	+	.	source_transcript=ENST00000624333.2;source_transcript_name=ENST00000624333;source_gene=ENSG00000284071.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000284071.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000624333.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000624333.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000284071;transcript_id=HG003_chrY_T0001818;gene_id=HG003_chrY_G0000650;Parent=HG003_chrY_T0001818;transcript_name=HG003_chrY_T0001818;gene_name=ENSG00000284071;ID=exon:HG003_chrY_T0001818:2;Name=ENSG00000284071;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24324263	24340807	.	+	.	source_gene_common_name=ENSG00000296017;source_gene=ENSG00000296017.1;gene_id=HG003_chrY_G0000651;gene_biotype=lncRNA;gene_name=ENSG00000296017;gene_sources=liftoff;ID=HG003_chrY_G0000651;Name=ENSG00000296017
HG003_chrY	CAT	transcript	24324263	24333842	1000	+	.	source_transcript=ENST00000735436.1;source_transcript_name=ENST00000735436;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735436.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001819;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_G0000651;transcript_name=HG003_chrY_T0001819;gene_name=ENSG00000296017;ID=HG003_chrY_T0001819;Name=ENSG00000296017
HG003_chrY	CAT	exon	24324263	24324630	.	+	.	source_transcript=ENST00000735436.1;source_transcript_name=ENST00000735436;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001819;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001819;transcript_name=HG003_chrY_T0001819;gene_name=ENSG00000296017;ID=exon:HG003_chrY_T0001819:0;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24324631	24325676	.	+	.	source_transcript=ENST00000735436.1;source_transcript_name=ENST00000735436;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001819;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001819;transcript_name=HG003_chrY_T0001819;gene_name=ENSG00000296017;ID=intron:HG003_chrY_T0001819:0;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24325677	24325826	.	+	.	source_transcript=ENST00000735436.1;source_transcript_name=ENST00000735436;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001819;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001819;transcript_name=HG003_chrY_T0001819;gene_name=ENSG00000296017;ID=exon:HG003_chrY_T0001819:1;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24325827	24333621	.	+	.	source_transcript=ENST00000735436.1;source_transcript_name=ENST00000735436;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001819;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001819;transcript_name=HG003_chrY_T0001819;gene_name=ENSG00000296017;ID=intron:HG003_chrY_T0001819:1;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24333622	24333842	.	+	.	source_transcript=ENST00000735436.1;source_transcript_name=ENST00000735436;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001819;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001819;transcript_name=HG003_chrY_T0001819;gene_name=ENSG00000296017;ID=exon:HG003_chrY_T0001819:2;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24324264	24340807	1000	+	.	source_transcript=ENST00000735435.1;source_transcript_name=ENST00000735435;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735435.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001820;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_G0000651;transcript_name=HG003_chrY_T0001820;gene_name=ENSG00000296017;ID=HG003_chrY_T0001820;Name=ENSG00000296017
HG003_chrY	CAT	exon	24324264	24324630	.	+	.	source_transcript=ENST00000735435.1;source_transcript_name=ENST00000735435;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001820;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001820;transcript_name=HG003_chrY_T0001820;gene_name=ENSG00000296017;ID=exon:HG003_chrY_T0001820:0;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24324631	24325647	.	+	.	source_transcript=ENST00000735435.1;source_transcript_name=ENST00000735435;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001820;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001820;transcript_name=HG003_chrY_T0001820;gene_name=ENSG00000296017;ID=intron:HG003_chrY_T0001820:0;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24325648	24325826	.	+	.	source_transcript=ENST00000735435.1;source_transcript_name=ENST00000735435;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001820;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001820;transcript_name=HG003_chrY_T0001820;gene_name=ENSG00000296017;ID=exon:HG003_chrY_T0001820:1;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24325827	24333621	.	+	.	source_transcript=ENST00000735435.1;source_transcript_name=ENST00000735435;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001820;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001820;transcript_name=HG003_chrY_T0001820;gene_name=ENSG00000296017;ID=intron:HG003_chrY_T0001820:1;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24333622	24333726	.	+	.	source_transcript=ENST00000735435.1;source_transcript_name=ENST00000735435;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001820;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001820;transcript_name=HG003_chrY_T0001820;gene_name=ENSG00000296017;ID=exon:HG003_chrY_T0001820:2;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24333727	24338430	.	+	.	source_transcript=ENST00000735435.1;source_transcript_name=ENST00000735435;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001820;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001820;transcript_name=HG003_chrY_T0001820;gene_name=ENSG00000296017;ID=intron:HG003_chrY_T0001820:2;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24338431	24338594	.	+	.	source_transcript=ENST00000735435.1;source_transcript_name=ENST00000735435;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001820;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001820;transcript_name=HG003_chrY_T0001820;gene_name=ENSG00000296017;ID=exon:HG003_chrY_T0001820:3;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24338595	24340232	.	+	.	source_transcript=ENST00000735435.1;source_transcript_name=ENST00000735435;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001820;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001820;transcript_name=HG003_chrY_T0001820;gene_name=ENSG00000296017;ID=intron:HG003_chrY_T0001820:3;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24340233	24340807	.	+	.	source_transcript=ENST00000735435.1;source_transcript_name=ENST00000735435;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001820;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001820;transcript_name=HG003_chrY_T0001820;gene_name=ENSG00000296017;ID=exon:HG003_chrY_T0001820:4;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24324418	24333842	1000	+	.	source_transcript=ENST00000735437.1;source_transcript_name=ENST00000735437;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735437.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001821;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_G0000651;transcript_name=HG003_chrY_T0001821;gene_name=ENSG00000296017;ID=HG003_chrY_T0001821;Name=ENSG00000296017
HG003_chrY	CAT	exon	24324418	24324630	.	+	.	source_transcript=ENST00000735437.1;source_transcript_name=ENST00000735437;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001821;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001821;transcript_name=HG003_chrY_T0001821;gene_name=ENSG00000296017;ID=exon:HG003_chrY_T0001821:0;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24324631	24325647	.	+	.	source_transcript=ENST00000735437.1;source_transcript_name=ENST00000735437;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001821;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001821;transcript_name=HG003_chrY_T0001821;gene_name=ENSG00000296017;ID=intron:HG003_chrY_T0001821:0;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24325648	24325826	.	+	.	source_transcript=ENST00000735437.1;source_transcript_name=ENST00000735437;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001821;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001821;transcript_name=HG003_chrY_T0001821;gene_name=ENSG00000296017;ID=exon:HG003_chrY_T0001821:1;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24325827	24333621	.	+	.	source_transcript=ENST00000735437.1;source_transcript_name=ENST00000735437;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001821;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001821;transcript_name=HG003_chrY_T0001821;gene_name=ENSG00000296017;ID=intron:HG003_chrY_T0001821:1;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24333622	24333842	.	+	.	source_transcript=ENST00000735437.1;source_transcript_name=ENST00000735437;source_gene=ENSG00000296017.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000296017.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000735437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000735437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000296017;transcript_id=HG003_chrY_T0001821;gene_id=HG003_chrY_G0000651;Parent=HG003_chrY_T0001821;transcript_name=HG003_chrY_T0001821;gene_name=ENSG00000296017;ID=exon:HG003_chrY_T0001821:2;Name=ENSG00000296017;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24343070	24346867	.	+	.	source_gene_common_name=CSPG4P1Y;source_gene=ENSG00000240450.1;gene_id=HG003_chrY_G0000652;gene_biotype=lncRNA;gene_name=CSPG4P1Y;gene_sources=liftoff;ID=HG003_chrY_G0000652;Name=CSPG4P1Y
HG003_chrY	CAT	transcript	24343070	24346867	1000	+	.	source_transcript=ENST00000306641.1;source_transcript_name=CSPG4P1Y-201;source_gene=ENSG00000240450.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000240450.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000306641.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000306641.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P1Y;transcript_id=HG003_chrY_T0001822;gene_id=HG003_chrY_G0000652;Parent=HG003_chrY_G0000652;transcript_name=HG003_chrY_T0001822;gene_name=CSPG4P1Y;ID=HG003_chrY_T0001822;Name=CSPG4P1Y
HG003_chrY	CAT	exon	24343070	24343792	.	+	.	source_transcript=ENST00000306641.1;source_transcript_name=CSPG4P1Y-201;source_gene=ENSG00000240450.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000240450.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000306641.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000306641.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P1Y;transcript_id=HG003_chrY_T0001822;gene_id=HG003_chrY_G0000652;Parent=HG003_chrY_T0001822;transcript_name=HG003_chrY_T0001822;gene_name=CSPG4P1Y;ID=exon:HG003_chrY_T0001822:0;Name=CSPG4P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24343793	24346795	.	+	.	source_transcript=ENST00000306641.1;source_transcript_name=CSPG4P1Y-201;source_gene=ENSG00000240450.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000240450.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000306641.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000306641.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P1Y;transcript_id=HG003_chrY_T0001822;gene_id=HG003_chrY_G0000652;Parent=HG003_chrY_T0001822;transcript_name=HG003_chrY_T0001822;gene_name=CSPG4P1Y;ID=intron:HG003_chrY_T0001822:0;Name=CSPG4P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24346796	24346867	.	+	.	source_transcript=ENST00000306641.1;source_transcript_name=CSPG4P1Y-201;source_gene=ENSG00000240450.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000240450.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000306641.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000306641.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P1Y;transcript_id=HG003_chrY_T0001822;gene_id=HG003_chrY_G0000652;Parent=HG003_chrY_T0001822;transcript_name=HG003_chrY_T0001822;gene_name=CSPG4P1Y;ID=exon:HG003_chrY_T0001822:1;Name=CSPG4P1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24346802	24347484	.	+	.	source_gene_common_name=DNM1P48;source_gene=ENSG00000239304.1;gene_id=HG003_chrY_G0000653;gene_biotype=transcribed_processed_pseudogene;gene_name=DNM1P48;gene_sources=liftoff;ID=HG003_chrY_G0000653;Name=DNM1P48
HG003_chrY	CAT	transcript	24346802	24347484	1000	+	.	source_transcript=ENST00000419538.1;source_transcript_name=DNM1P48-201;source_gene=ENSG00000239304.1;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000239304.1;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000419538.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419538.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DNM1P48;transcript_id=HG003_chrY_T0001823;gene_id=HG003_chrY_G0000653;Parent=HG003_chrY_G0000653;transcript_name=HG003_chrY_T0001823;gene_name=DNM1P48;ID=HG003_chrY_T0001823;Name=DNM1P48
HG003_chrY	CAT	exon	24346802	24347027	.	+	.	source_transcript=ENST00000419538.1;source_transcript_name=DNM1P48-201;source_gene=ENSG00000239304.1;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000239304.1;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000419538.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DNM1P48;transcript_id=HG003_chrY_T0001823;gene_id=HG003_chrY_G0000653;Parent=HG003_chrY_T0001823;transcript_name=HG003_chrY_T0001823;gene_name=DNM1P48;ID=exon:HG003_chrY_T0001823:0;Name=DNM1P48;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24347028	24347271	.	+	.	source_transcript=ENST00000419538.1;source_transcript_name=DNM1P48-201;source_gene=ENSG00000239304.1;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000239304.1;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000419538.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DNM1P48;transcript_id=HG003_chrY_T0001823;gene_id=HG003_chrY_G0000653;Parent=HG003_chrY_T0001823;transcript_name=HG003_chrY_T0001823;gene_name=DNM1P48;ID=intron:HG003_chrY_T0001823:0;Name=DNM1P48;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24347272	24347484	.	+	.	source_transcript=ENST00000419538.1;source_transcript_name=DNM1P48-201;source_gene=ENSG00000239304.1;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000239304.1;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000419538.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419538.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DNM1P48;transcript_id=HG003_chrY_T0001823;gene_id=HG003_chrY_G0000653;Parent=HG003_chrY_T0001823;transcript_name=HG003_chrY_T0001823;gene_name=DNM1P48;ID=exon:HG003_chrY_T0001823:1;Name=DNM1P48;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24347446	24347824	.	-	.	source_gene_common_name=ENSG00000233619;source_gene=ENSG00000233619.1;gene_id=HG003_chrY_G0000654;gene_biotype=processed_pseudogene;gene_name=ENSG00000233619;gene_sources=liftoff;ID=HG003_chrY_G0000654;Name=ENSG00000233619
HG003_chrY	CAT	transcript	24347446	24347824	1000	-	.	source_transcript=ENST00000437571.1;source_transcript_name=ENST00000437571;source_gene=ENSG00000233619.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233619.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000437571.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437571.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000233619;transcript_id=HG003_chrY_T0001824;gene_id=HG003_chrY_G0000654;Parent=HG003_chrY_G0000654;transcript_name=HG003_chrY_T0001824;gene_name=ENSG00000233619;ID=HG003_chrY_T0001824;Name=ENSG00000233619
HG003_chrY	CAT	exon	24347446	24347824	.	-	.	source_transcript=ENST00000437571.1;source_transcript_name=ENST00000437571;source_gene=ENSG00000233619.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233619.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000437571.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437571.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000233619;transcript_id=HG003_chrY_T0001824;gene_id=HG003_chrY_G0000654;Parent=HG003_chrY_T0001824;transcript_name=HG003_chrY_T0001824;gene_name=ENSG00000233619;ID=exon:HG003_chrY_T0001824:0;Name=ENSG00000233619;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24353096	24358679	.	-	.	source_gene_common_name=ENSG00000307363;source_gene=ENSG00000307363.1;gene_id=HG003_chrY_G0000655;gene_biotype=lncRNA;gene_name=ENSG00000307363;gene_sources=liftoff;ID=HG003_chrY_G0000655;Name=ENSG00000307363
HG003_chrY	CAT	transcript	24353096	24358506	1000	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001825;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001825;gene_name=ENSG00000307363;ID=HG003_chrY_T0001825;Name=ENSG00000307363
HG003_chrY	CAT	exon	24353096	24355949	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001825;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001825;transcript_name=HG003_chrY_T0001825;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001825:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001825;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001825;transcript_name=HG003_chrY_T0001825;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001825:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001825;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001825;transcript_name=HG003_chrY_T0001825;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001825:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357313	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001825;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001825;transcript_name=HG003_chrY_T0001825;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001825:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357314	24357374	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001825;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001825;transcript_name=HG003_chrY_T0001825;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001825:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357641	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001825;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001825;transcript_name=HG003_chrY_T0001825;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001825:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357642	24358506	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001825;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001825;transcript_name=HG003_chrY_T0001825;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001825:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355383	24358249	1000	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001826;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001826;gene_name=ENSG00000307363;ID=HG003_chrY_T0001826;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355383	24355949	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001826;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001826;transcript_name=HG003_chrY_T0001826;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001826:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001826;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001826;transcript_name=HG003_chrY_T0001826;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001826:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001826;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001826;transcript_name=HG003_chrY_T0001826;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001826:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357296	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001826;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001826;transcript_name=HG003_chrY_T0001826;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001826:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357297	24357374	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001826;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001826;transcript_name=HG003_chrY_T0001826;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001826:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357641	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001826;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001826;transcript_name=HG003_chrY_T0001826;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001826:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357642	24358249	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001826;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001826;transcript_name=HG003_chrY_T0001826;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001826:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355784	24356508	1000	-	.	source_transcript=ENST00000825441.1;source_transcript_name=ENST00000825441;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825441.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825441.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001827;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001827;gene_name=ENSG00000307363;ID=HG003_chrY_T0001827;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355784	24355949	.	-	.	source_transcript=ENST00000825441.1;source_transcript_name=ENST00000825441;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825441.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001827;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001827;transcript_name=HG003_chrY_T0001827;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001827:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825441.1;source_transcript_name=ENST00000825441;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825441.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001827;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001827;transcript_name=HG003_chrY_T0001827;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001827:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356508	.	-	.	source_transcript=ENST00000825441.1;source_transcript_name=ENST00000825441;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825441.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001827;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001827;transcript_name=HG003_chrY_T0001827;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001827:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355785	24357995	1000	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001828;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001828;gene_name=ENSG00000307363;ID=HG003_chrY_T0001828;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355785	24355949	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001828;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001828;transcript_name=HG003_chrY_T0001828;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001828:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001828;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001828;transcript_name=HG003_chrY_T0001828;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001828:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001828;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001828;transcript_name=HG003_chrY_T0001828;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001828:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357313	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001828;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001828;transcript_name=HG003_chrY_T0001828;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001828:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357314	24357374	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001828;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001828;transcript_name=HG003_chrY_T0001828;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001828:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357812	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001828;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001828;transcript_name=HG003_chrY_T0001828;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001828:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357813	24357995	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001828;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001828;transcript_name=HG003_chrY_T0001828;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001828:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355785	24358665	1000	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001829;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001829;gene_name=ENSG00000307363;ID=HG003_chrY_T0001829;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355785	24355949	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001829;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001829;transcript_name=HG003_chrY_T0001829;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001829:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001829;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001829;transcript_name=HG003_chrY_T0001829;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001829:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001829;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001829;transcript_name=HG003_chrY_T0001829;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001829:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357313	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001829;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001829;transcript_name=HG003_chrY_T0001829;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001829:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357314	24357374	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001829;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001829;transcript_name=HG003_chrY_T0001829;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001829:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24358598	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001829;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001829;transcript_name=HG003_chrY_T0001829;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001829:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24358599	24358665	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001829;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001829;transcript_name=HG003_chrY_T0001829;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001829:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355785	24358679	1000	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001830;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001830;gene_name=ENSG00000307363;ID=HG003_chrY_T0001830;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355785	24355949	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001830;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001830;transcript_name=HG003_chrY_T0001830;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001830:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001830;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001830;transcript_name=HG003_chrY_T0001830;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001830:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001830;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001830;transcript_name=HG003_chrY_T0001830;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001830:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357135	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001830;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001830;transcript_name=HG003_chrY_T0001830;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001830:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357136	24357374	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001830;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001830;transcript_name=HG003_chrY_T0001830;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001830:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24358598	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001830;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001830;transcript_name=HG003_chrY_T0001830;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001830:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24358599	24358679	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001830;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001830;transcript_name=HG003_chrY_T0001830;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001830:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355785	24357659	1000	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001831;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001831;gene_name=ENSG00000307363;ID=HG003_chrY_T0001831;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355785	24355949	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001831;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001831;transcript_name=HG003_chrY_T0001831;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001831:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001831;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001831;transcript_name=HG003_chrY_T0001831;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001831:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001831;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001831;transcript_name=HG003_chrY_T0001831;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001831:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357296	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001831;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001831;transcript_name=HG003_chrY_T0001831;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001831:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357297	24357374	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001831;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001831;transcript_name=HG003_chrY_T0001831;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001831:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357485	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001831;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001831;transcript_name=HG003_chrY_T0001831;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001831:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357486	24357659	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001831;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001831;transcript_name=HG003_chrY_T0001831;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001831:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355785	24357659	1000	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001832;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001832;gene_name=ENSG00000307363;ID=HG003_chrY_T0001832;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355785	24355949	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001832;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001832;transcript_name=HG003_chrY_T0001832;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001832:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001832;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001832;transcript_name=HG003_chrY_T0001832;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001832:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001832;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001832;transcript_name=HG003_chrY_T0001832;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001832:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357135	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001832;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001832;transcript_name=HG003_chrY_T0001832;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001832:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357136	24357374	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001832;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001832;transcript_name=HG003_chrY_T0001832;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001832:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357485	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001832;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001832;transcript_name=HG003_chrY_T0001832;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001832:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357486	24357659	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001832;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001832;transcript_name=HG003_chrY_T0001832;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001832:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355785	24357974	1000	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001833;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001833;gene_name=ENSG00000307363;ID=HG003_chrY_T0001833;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355785	24355949	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001833;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001833;transcript_name=HG003_chrY_T0001833;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001833:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001833;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001833;transcript_name=HG003_chrY_T0001833;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001833:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001833;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001833;transcript_name=HG003_chrY_T0001833;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001833:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357135	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001833;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001833;transcript_name=HG003_chrY_T0001833;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001833:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357136	24357374	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001833;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001833;transcript_name=HG003_chrY_T0001833;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001833:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357812	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001833;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001833;transcript_name=HG003_chrY_T0001833;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001833:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357813	24357974	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001833;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001833;transcript_name=HG003_chrY_T0001833;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001833:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355785	24358085	1000	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001834;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001834;gene_name=ENSG00000307363;ID=HG003_chrY_T0001834;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355785	24355949	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001834;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001834;transcript_name=HG003_chrY_T0001834;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001834:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001834;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001834;transcript_name=HG003_chrY_T0001834;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001834:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001834;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001834;transcript_name=HG003_chrY_T0001834;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001834:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357313	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001834;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001834;transcript_name=HG003_chrY_T0001834;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001834:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357314	24357374	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001834;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001834;transcript_name=HG003_chrY_T0001834;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001834:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357912	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001834;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001834;transcript_name=HG003_chrY_T0001834;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001834:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357913	24358085	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001834;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001834;transcript_name=HG003_chrY_T0001834;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001834:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355785	24357876	1000	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001835;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001835;gene_name=ENSG00000307363;ID=HG003_chrY_T0001835;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355785	24355949	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001835;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001835;transcript_name=HG003_chrY_T0001835;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001835:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001835;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001835;transcript_name=HG003_chrY_T0001835;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001835:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001835;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001835;transcript_name=HG003_chrY_T0001835;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001835:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357135	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001835;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001835;transcript_name=HG003_chrY_T0001835;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001835:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357136	24357374	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001835;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001835;transcript_name=HG003_chrY_T0001835;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001835:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357641	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001835;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001835;transcript_name=HG003_chrY_T0001835;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001835:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357642	24357876	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001835;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001835;transcript_name=HG003_chrY_T0001835;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001835:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355785	24358077	1000	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001836;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001836;gene_name=ENSG00000307363;ID=HG003_chrY_T0001836;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355785	24355949	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001836;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001836;transcript_name=HG003_chrY_T0001836;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001836:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001836;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001836;transcript_name=HG003_chrY_T0001836;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001836:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001836;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001836;transcript_name=HG003_chrY_T0001836;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001836:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357135	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001836;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001836;transcript_name=HG003_chrY_T0001836;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001836:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357136	24357374	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001836;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001836;transcript_name=HG003_chrY_T0001836;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001836:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357912	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001836;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001836;transcript_name=HG003_chrY_T0001836;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001836:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357913	24358077	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001836;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001836;transcript_name=HG003_chrY_T0001836;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001836:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355785	24357753	1000	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001837;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001837;gene_name=ENSG00000307363;ID=HG003_chrY_T0001837;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355785	24355949	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001837;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001837;transcript_name=HG003_chrY_T0001837;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001837:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001837;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001837;transcript_name=HG003_chrY_T0001837;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001837:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001837;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001837;transcript_name=HG003_chrY_T0001837;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001837:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357313	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001837;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001837;transcript_name=HG003_chrY_T0001837;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001837:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357314	24357374	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001837;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001837;transcript_name=HG003_chrY_T0001837;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001837:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357485	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001837;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001837;transcript_name=HG003_chrY_T0001837;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001837:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357486	24357753	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001837;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001837;transcript_name=HG003_chrY_T0001837;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001837:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355785	24358029	1000	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001838;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001838;gene_name=ENSG00000307363;ID=HG003_chrY_T0001838;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355785	24355949	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001838;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001838;transcript_name=HG003_chrY_T0001838;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001838:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001838;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001838;transcript_name=HG003_chrY_T0001838;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001838:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001838;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001838;transcript_name=HG003_chrY_T0001838;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001838:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357296	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001838;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001838;transcript_name=HG003_chrY_T0001838;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001838:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357297	24357374	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001838;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001838;transcript_name=HG003_chrY_T0001838;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001838:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357912	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001838;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001838;transcript_name=HG003_chrY_T0001838;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001838:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357913	24358029	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001838;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001838;transcript_name=HG003_chrY_T0001838;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001838:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355785	24357995	1000	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001839;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001839;gene_name=ENSG00000307363;ID=HG003_chrY_T0001839;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355785	24355949	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001839;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001839;transcript_name=HG003_chrY_T0001839;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001839:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001839;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001839;transcript_name=HG003_chrY_T0001839;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001839:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001839;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001839;transcript_name=HG003_chrY_T0001839;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001839:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357296	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001839;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001839;transcript_name=HG003_chrY_T0001839;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001839:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357297	24357374	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001839;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001839;transcript_name=HG003_chrY_T0001839;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001839:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357812	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001839;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001839;transcript_name=HG003_chrY_T0001839;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001839:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357813	24357995	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001839;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001839;transcript_name=HG003_chrY_T0001839;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001839:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24355786	24357915	1000	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001840;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_G0000655;transcript_name=HG003_chrY_T0001840;gene_name=ENSG00000307363;ID=HG003_chrY_T0001840;Name=ENSG00000307363
HG003_chrY	CAT	exon	24355786	24355949	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001840;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001840;transcript_name=HG003_chrY_T0001840;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001840:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355950	24356158	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001840;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001840;transcript_name=HG003_chrY_T0001840;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001840:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356159	24356273	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001840;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001840;transcript_name=HG003_chrY_T0001840;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001840:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356274	24357135	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001840;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001840;transcript_name=HG003_chrY_T0001840;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001840:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357136	24357374	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001840;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001840;transcript_name=HG003_chrY_T0001840;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001840:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357726	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001840;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001840;transcript_name=HG003_chrY_T0001840;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0001840:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357727	24357915	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0001840;gene_id=HG003_chrY_G0000655;Parent=HG003_chrY_T0001840;transcript_name=HG003_chrY_T0001840;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0001840:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24355817	24362124	.	-	.	source_gene_common_name=GOLGA6L16P;source_gene=ENSG00000197092.5_1;gene_id=HG003_chrY_G0000656;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=GOLGA6L16P;gene_sources=liftoff;ID=HG003_chrY_G0000656;Name=GOLGA6L16P
HG003_chrY	CAT	transcript	24355817	24362124	1000	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_G0000656;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=HG003_chrY_T0001841;Name=GOLGA6L16P
HG003_chrY	CAT	exon	24355817	24355948	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0001841:0;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24355949	24356157	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0001841:0;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24356158	24356281	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0001841:1;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24356282	24357303	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0001841:1;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357304	24357374	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0001841:2;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24357375	24357641	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0001841:2;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24357642	24358211	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0001841:3;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24358212	24358616	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0001841:3;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24358617	24358673	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0001841:4;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24358674	24359329	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0001841:4;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24359330	24359410	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0001841:5;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24359411	24359595	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0001841:5;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24359596	24359655	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0001841:6;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24359656	24360277	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0001841:6;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24360278	24360397	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0001841:7;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24360398	24362040	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0001841:7;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24362041	24362124	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5_1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5_1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0001841;gene_id=HG003_chrY_G0000656;Parent=HG003_chrY_T0001841;transcript_name=HG003_chrY_T0001841;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0001841:8;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24372466	24387951	.	-	.	source_gene_common_name=ENSG00000235583;source_gene=ENSG00000235583.2;gene_id=HG003_chrY_G0000657;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000235583;gene_sources=liftoff;ID=HG003_chrY_G0000657;Name=ENSG00000235583
HG003_chrY	CAT	transcript	24372466	24387951	1000	-	.	source_transcript=ENST00000421819.1;source_transcript_name=ENST00000421819;source_gene=ENSG00000235583.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235583.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421819.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235583;transcript_id=HG003_chrY_T0001842;gene_id=HG003_chrY_G0000657;Parent=HG003_chrY_G0000657;transcript_name=HG003_chrY_T0001842;gene_name=ENSG00000235583;ID=HG003_chrY_T0001842;Name=ENSG00000235583
HG003_chrY	CAT	exon	24372466	24372561	.	-	.	source_transcript=ENST00000421819.1;source_transcript_name=ENST00000421819;source_gene=ENSG00000235583.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235583.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235583;transcript_id=HG003_chrY_T0001842;gene_id=HG003_chrY_G0000657;Parent=HG003_chrY_T0001842;transcript_name=HG003_chrY_T0001842;gene_name=ENSG00000235583;ID=exon:HG003_chrY_T0001842:0;Name=ENSG00000235583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24372562	24373289	.	-	.	source_transcript=ENST00000421819.1;source_transcript_name=ENST00000421819;source_gene=ENSG00000235583.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235583.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235583;transcript_id=HG003_chrY_T0001842;gene_id=HG003_chrY_G0000657;Parent=HG003_chrY_T0001842;transcript_name=HG003_chrY_T0001842;gene_name=ENSG00000235583;ID=intron:HG003_chrY_T0001842:0;Name=ENSG00000235583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24373290	24373338	.	-	.	source_transcript=ENST00000421819.1;source_transcript_name=ENST00000421819;source_gene=ENSG00000235583.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235583.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235583;transcript_id=HG003_chrY_T0001842;gene_id=HG003_chrY_G0000657;Parent=HG003_chrY_T0001842;transcript_name=HG003_chrY_T0001842;gene_name=ENSG00000235583;ID=exon:HG003_chrY_T0001842:1;Name=ENSG00000235583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24373339	24379843	.	-	.	source_transcript=ENST00000421819.1;source_transcript_name=ENST00000421819;source_gene=ENSG00000235583.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235583.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235583;transcript_id=HG003_chrY_T0001842;gene_id=HG003_chrY_G0000657;Parent=HG003_chrY_T0001842;transcript_name=HG003_chrY_T0001842;gene_name=ENSG00000235583;ID=intron:HG003_chrY_T0001842:1;Name=ENSG00000235583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24379844	24379902	.	-	.	source_transcript=ENST00000421819.1;source_transcript_name=ENST00000421819;source_gene=ENSG00000235583.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235583.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235583;transcript_id=HG003_chrY_T0001842;gene_id=HG003_chrY_G0000657;Parent=HG003_chrY_T0001842;transcript_name=HG003_chrY_T0001842;gene_name=ENSG00000235583;ID=exon:HG003_chrY_T0001842:2;Name=ENSG00000235583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24379903	24384185	.	-	.	source_transcript=ENST00000421819.1;source_transcript_name=ENST00000421819;source_gene=ENSG00000235583.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235583.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235583;transcript_id=HG003_chrY_T0001842;gene_id=HG003_chrY_G0000657;Parent=HG003_chrY_T0001842;transcript_name=HG003_chrY_T0001842;gene_name=ENSG00000235583;ID=intron:HG003_chrY_T0001842:2;Name=ENSG00000235583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24384186	24384275	.	-	.	source_transcript=ENST00000421819.1;source_transcript_name=ENST00000421819;source_gene=ENSG00000235583.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235583.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235583;transcript_id=HG003_chrY_T0001842;gene_id=HG003_chrY_G0000657;Parent=HG003_chrY_T0001842;transcript_name=HG003_chrY_T0001842;gene_name=ENSG00000235583;ID=exon:HG003_chrY_T0001842:3;Name=ENSG00000235583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24384276	24385368	.	-	.	source_transcript=ENST00000421819.1;source_transcript_name=ENST00000421819;source_gene=ENSG00000235583.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235583.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235583;transcript_id=HG003_chrY_T0001842;gene_id=HG003_chrY_G0000657;Parent=HG003_chrY_T0001842;transcript_name=HG003_chrY_T0001842;gene_name=ENSG00000235583;ID=intron:HG003_chrY_T0001842:3;Name=ENSG00000235583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24385369	24385453	.	-	.	source_transcript=ENST00000421819.1;source_transcript_name=ENST00000421819;source_gene=ENSG00000235583.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235583.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235583;transcript_id=HG003_chrY_T0001842;gene_id=HG003_chrY_G0000657;Parent=HG003_chrY_T0001842;transcript_name=HG003_chrY_T0001842;gene_name=ENSG00000235583;ID=exon:HG003_chrY_T0001842:4;Name=ENSG00000235583;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24385454	24387813	.	-	.	source_transcript=ENST00000421819.1;source_transcript_name=ENST00000421819;source_gene=ENSG00000235583.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235583.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235583;transcript_id=HG003_chrY_T0001842;gene_id=HG003_chrY_G0000657;Parent=HG003_chrY_T0001842;transcript_name=HG003_chrY_T0001842;gene_name=ENSG00000235583;ID=intron:HG003_chrY_T0001842:4;Name=ENSG00000235583;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24387814	24387951	.	-	.	source_transcript=ENST00000421819.1;source_transcript_name=ENST00000421819;source_gene=ENSG00000235583.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235583.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000421819.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421819.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235583;transcript_id=HG003_chrY_T0001842;gene_id=HG003_chrY_G0000657;Parent=HG003_chrY_T0001842;transcript_name=HG003_chrY_T0001842;gene_name=ENSG00000235583;ID=exon:HG003_chrY_T0001842:5;Name=ENSG00000235583;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24377528	24392923	.	-	.	source_gene_common_name=ENSG00000304207;source_gene=ENSG00000304207.1;gene_id=HG003_chrY_G0000658;gene_biotype=lncRNA;gene_name=ENSG00000304207;gene_sources=liftoff;ID=HG003_chrY_G0000658;Name=ENSG00000304207
HG003_chrY	CAT	transcript	24377528	24392915	1000	-	.	source_transcript=ENST00000801028.1;source_transcript_name=ENST00000801028;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801028.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001843;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_G0000658;transcript_name=HG003_chrY_T0001843;gene_name=ENSG00000304207;ID=HG003_chrY_T0001843;Name=ENSG00000304207
HG003_chrY	CAT	exon	24377528	24377963	.	-	.	source_transcript=ENST00000801028.1;source_transcript_name=ENST00000801028;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001843;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001843;transcript_name=HG003_chrY_T0001843;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001843:0;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24377964	24384190	.	-	.	source_transcript=ENST00000801028.1;source_transcript_name=ENST00000801028;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001843;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001843;transcript_name=HG003_chrY_T0001843;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001843:0;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24384191	24384275	.	-	.	source_transcript=ENST00000801028.1;source_transcript_name=ENST00000801028;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001843;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001843;transcript_name=HG003_chrY_T0001843;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001843:1;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24384276	24387829	.	-	.	source_transcript=ENST00000801028.1;source_transcript_name=ENST00000801028;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001843;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001843;transcript_name=HG003_chrY_T0001843;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001843:1;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24387830	24387951	.	-	.	source_transcript=ENST00000801028.1;source_transcript_name=ENST00000801028;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001843;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001843;transcript_name=HG003_chrY_T0001843;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001843:2;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24387952	24391906	.	-	.	source_transcript=ENST00000801028.1;source_transcript_name=ENST00000801028;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001843;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001843;transcript_name=HG003_chrY_T0001843;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001843:2;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24391907	24392069	.	-	.	source_transcript=ENST00000801028.1;source_transcript_name=ENST00000801028;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001843;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001843;transcript_name=HG003_chrY_T0001843;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001843:3;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24392070	24392817	.	-	.	source_transcript=ENST00000801028.1;source_transcript_name=ENST00000801028;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001843;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001843;transcript_name=HG003_chrY_T0001843;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001843:3;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24392818	24392915	.	-	.	source_transcript=ENST00000801028.1;source_transcript_name=ENST00000801028;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801028.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801028.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001843;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001843;transcript_name=HG003_chrY_T0001843;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001843:4;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24377528	24392923	1000	-	.	source_transcript=ENST00000801026.1;source_transcript_name=ENST00000801026;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801026.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001844;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_G0000658;transcript_name=HG003_chrY_T0001844;gene_name=ENSG00000304207;ID=HG003_chrY_T0001844;Name=ENSG00000304207
HG003_chrY	CAT	exon	24377528	24377963	.	-	.	source_transcript=ENST00000801026.1;source_transcript_name=ENST00000801026;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001844;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001844;transcript_name=HG003_chrY_T0001844;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001844:0;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24377964	24384190	.	-	.	source_transcript=ENST00000801026.1;source_transcript_name=ENST00000801026;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001844;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001844;transcript_name=HG003_chrY_T0001844;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001844:0;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24384191	24384275	.	-	.	source_transcript=ENST00000801026.1;source_transcript_name=ENST00000801026;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001844;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001844;transcript_name=HG003_chrY_T0001844;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001844:1;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24384276	24387813	.	-	.	source_transcript=ENST00000801026.1;source_transcript_name=ENST00000801026;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001844;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001844;transcript_name=HG003_chrY_T0001844;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001844:1;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24387814	24387951	.	-	.	source_transcript=ENST00000801026.1;source_transcript_name=ENST00000801026;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001844;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001844;transcript_name=HG003_chrY_T0001844;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001844:2;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24387952	24392817	.	-	.	source_transcript=ENST00000801026.1;source_transcript_name=ENST00000801026;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001844;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001844;transcript_name=HG003_chrY_T0001844;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001844:2;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24392818	24392923	.	-	.	source_transcript=ENST00000801026.1;source_transcript_name=ENST00000801026;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801026.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801026.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001844;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001844;transcript_name=HG003_chrY_T0001844;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001844:3;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24377528	24392922	1000	-	.	source_transcript=ENST00000801027.1;source_transcript_name=ENST00000801027;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801027.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001845;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_G0000658;transcript_name=HG003_chrY_T0001845;gene_name=ENSG00000304207;ID=HG003_chrY_T0001845;Name=ENSG00000304207
HG003_chrY	CAT	exon	24377528	24377963	.	-	.	source_transcript=ENST00000801027.1;source_transcript_name=ENST00000801027;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001845;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001845;transcript_name=HG003_chrY_T0001845;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001845:0;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24377964	24384190	.	-	.	source_transcript=ENST00000801027.1;source_transcript_name=ENST00000801027;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001845;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001845;transcript_name=HG003_chrY_T0001845;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001845:0;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24384191	24384275	.	-	.	source_transcript=ENST00000801027.1;source_transcript_name=ENST00000801027;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001845;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001845;transcript_name=HG003_chrY_T0001845;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001845:1;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24384276	24385368	.	-	.	source_transcript=ENST00000801027.1;source_transcript_name=ENST00000801027;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001845;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001845;transcript_name=HG003_chrY_T0001845;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001845:1;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24385369	24385453	.	-	.	source_transcript=ENST00000801027.1;source_transcript_name=ENST00000801027;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001845;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001845;transcript_name=HG003_chrY_T0001845;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001845:2;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24385454	24387829	.	-	.	source_transcript=ENST00000801027.1;source_transcript_name=ENST00000801027;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001845;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001845;transcript_name=HG003_chrY_T0001845;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001845:2;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24387830	24387951	.	-	.	source_transcript=ENST00000801027.1;source_transcript_name=ENST00000801027;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001845;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001845;transcript_name=HG003_chrY_T0001845;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001845:3;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24387952	24391906	.	-	.	source_transcript=ENST00000801027.1;source_transcript_name=ENST00000801027;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001845;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001845;transcript_name=HG003_chrY_T0001845;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001845:3;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24391907	24392069	.	-	.	source_transcript=ENST00000801027.1;source_transcript_name=ENST00000801027;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001845;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001845;transcript_name=HG003_chrY_T0001845;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001845:4;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24392070	24392817	.	-	.	source_transcript=ENST00000801027.1;source_transcript_name=ENST00000801027;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001845;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001845;transcript_name=HG003_chrY_T0001845;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001845:4;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24392818	24392922	.	-	.	source_transcript=ENST00000801027.1;source_transcript_name=ENST00000801027;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801027.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801027.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001845;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001845;transcript_name=HG003_chrY_T0001845;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001845:5;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24377541	24392864	1000	-	.	source_transcript=ENST00000801030.1;source_transcript_name=ENST00000801030;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801030.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001846;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_G0000658;transcript_name=HG003_chrY_T0001846;gene_name=ENSG00000304207;ID=HG003_chrY_T0001846;Name=ENSG00000304207
HG003_chrY	CAT	exon	24377541	24377963	.	-	.	source_transcript=ENST00000801030.1;source_transcript_name=ENST00000801030;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001846;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001846;transcript_name=HG003_chrY_T0001846;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001846:0;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24377964	24384190	.	-	.	source_transcript=ENST00000801030.1;source_transcript_name=ENST00000801030;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001846;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001846;transcript_name=HG003_chrY_T0001846;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001846:0;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24384191	24384275	.	-	.	source_transcript=ENST00000801030.1;source_transcript_name=ENST00000801030;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001846;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001846;transcript_name=HG003_chrY_T0001846;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001846:1;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24384276	24385368	.	-	.	source_transcript=ENST00000801030.1;source_transcript_name=ENST00000801030;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001846;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001846;transcript_name=HG003_chrY_T0001846;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001846:1;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24385369	24385453	.	-	.	source_transcript=ENST00000801030.1;source_transcript_name=ENST00000801030;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001846;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001846;transcript_name=HG003_chrY_T0001846;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001846:2;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24385454	24387813	.	-	.	source_transcript=ENST00000801030.1;source_transcript_name=ENST00000801030;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001846;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001846;transcript_name=HG003_chrY_T0001846;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001846:2;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24387814	24387951	.	-	.	source_transcript=ENST00000801030.1;source_transcript_name=ENST00000801030;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001846;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001846;transcript_name=HG003_chrY_T0001846;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001846:3;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24387952	24391906	.	-	.	source_transcript=ENST00000801030.1;source_transcript_name=ENST00000801030;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001846;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001846;transcript_name=HG003_chrY_T0001846;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001846:3;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24391907	24392069	.	-	.	source_transcript=ENST00000801030.1;source_transcript_name=ENST00000801030;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001846;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001846;transcript_name=HG003_chrY_T0001846;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001846:4;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24392070	24392817	.	-	.	source_transcript=ENST00000801030.1;source_transcript_name=ENST00000801030;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001846;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001846;transcript_name=HG003_chrY_T0001846;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001846:4;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24392818	24392864	.	-	.	source_transcript=ENST00000801030.1;source_transcript_name=ENST00000801030;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801030.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801030.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001846;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001846;transcript_name=HG003_chrY_T0001846;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001846:5;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24377541	24392906	1000	-	.	source_transcript=ENST00000801029.1;source_transcript_name=ENST00000801029;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801029.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001847;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_G0000658;transcript_name=HG003_chrY_T0001847;gene_name=ENSG00000304207;ID=HG003_chrY_T0001847;Name=ENSG00000304207
HG003_chrY	CAT	exon	24377541	24377963	.	-	.	source_transcript=ENST00000801029.1;source_transcript_name=ENST00000801029;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001847;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001847;transcript_name=HG003_chrY_T0001847;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001847:0;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24377964	24384190	.	-	.	source_transcript=ENST00000801029.1;source_transcript_name=ENST00000801029;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001847;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001847;transcript_name=HG003_chrY_T0001847;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001847:0;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24384191	24384275	.	-	.	source_transcript=ENST00000801029.1;source_transcript_name=ENST00000801029;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001847;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001847;transcript_name=HG003_chrY_T0001847;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001847:1;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24384276	24385368	.	-	.	source_transcript=ENST00000801029.1;source_transcript_name=ENST00000801029;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001847;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001847;transcript_name=HG003_chrY_T0001847;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001847:1;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24385369	24385453	.	-	.	source_transcript=ENST00000801029.1;source_transcript_name=ENST00000801029;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001847;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001847;transcript_name=HG003_chrY_T0001847;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001847:2;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24385454	24387813	.	-	.	source_transcript=ENST00000801029.1;source_transcript_name=ENST00000801029;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001847;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001847;transcript_name=HG003_chrY_T0001847;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001847:2;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24387814	24387951	.	-	.	source_transcript=ENST00000801029.1;source_transcript_name=ENST00000801029;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001847;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001847;transcript_name=HG003_chrY_T0001847;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001847:3;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24387952	24392817	.	-	.	source_transcript=ENST00000801029.1;source_transcript_name=ENST00000801029;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001847;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001847;transcript_name=HG003_chrY_T0001847;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001847:3;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24392818	24392906	.	-	.	source_transcript=ENST00000801029.1;source_transcript_name=ENST00000801029;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801029.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801029.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001847;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001847;transcript_name=HG003_chrY_T0001847;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001847:4;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24377774	24392214	1000	-	.	source_transcript=ENST00000801031.1;source_transcript_name=ENST00000801031;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801031.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001848;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_G0000658;transcript_name=HG003_chrY_T0001848;gene_name=ENSG00000304207;ID=HG003_chrY_T0001848;Name=ENSG00000304207
HG003_chrY	CAT	exon	24377774	24377963	.	-	.	source_transcript=ENST00000801031.1;source_transcript_name=ENST00000801031;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001848;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001848;transcript_name=HG003_chrY_T0001848;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001848:0;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24377964	24384190	.	-	.	source_transcript=ENST00000801031.1;source_transcript_name=ENST00000801031;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001848;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001848;transcript_name=HG003_chrY_T0001848;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001848:0;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24384191	24384275	.	-	.	source_transcript=ENST00000801031.1;source_transcript_name=ENST00000801031;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001848;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001848;transcript_name=HG003_chrY_T0001848;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001848:1;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24384276	24385368	.	-	.	source_transcript=ENST00000801031.1;source_transcript_name=ENST00000801031;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001848;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001848;transcript_name=HG003_chrY_T0001848;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001848:1;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24385369	24385453	.	-	.	source_transcript=ENST00000801031.1;source_transcript_name=ENST00000801031;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001848;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001848;transcript_name=HG003_chrY_T0001848;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001848:2;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24385454	24387829	.	-	.	source_transcript=ENST00000801031.1;source_transcript_name=ENST00000801031;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001848;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001848;transcript_name=HG003_chrY_T0001848;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001848:2;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24387830	24387951	.	-	.	source_transcript=ENST00000801031.1;source_transcript_name=ENST00000801031;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001848;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001848;transcript_name=HG003_chrY_T0001848;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001848:3;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24387952	24391906	.	-	.	source_transcript=ENST00000801031.1;source_transcript_name=ENST00000801031;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001848;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001848;transcript_name=HG003_chrY_T0001848;gene_name=ENSG00000304207;ID=intron:HG003_chrY_T0001848:3;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24391907	24392214	.	-	.	source_transcript=ENST00000801031.1;source_transcript_name=ENST00000801031;source_gene=ENSG00000304207.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000304207.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000801031.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000801031.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000304207;transcript_id=HG003_chrY_T0001848;gene_id=HG003_chrY_G0000658;Parent=HG003_chrY_T0001848;transcript_name=HG003_chrY_T0001848;gene_name=ENSG00000304207;ID=exon:HG003_chrY_T0001848:4;Name=ENSG00000304207;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24424274	24426185	.	-	.	source_gene_common_name=CDY19P;source_gene=ENSG00000237823.1;gene_id=HG003_chrY_G0000659;gene_biotype=unprocessed_pseudogene;gene_name=CDY19P;gene_sources=liftoff;ID=HG003_chrY_G0000659;Name=CDY19P
HG003_chrY	CAT	transcript	24424274	24426185	1000	-	.	source_transcript=ENST00000411668.1;source_transcript_name=CDY19P-201;source_gene=ENSG00000237823.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237823.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000411668.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411668.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY19P;transcript_id=HG003_chrY_T0001849;gene_id=HG003_chrY_G0000659;Parent=HG003_chrY_G0000659;transcript_name=HG003_chrY_T0001849;gene_name=CDY19P;ID=HG003_chrY_T0001849;Name=CDY19P
HG003_chrY	CAT	exon	24424274	24425715	.	-	.	source_transcript=ENST00000411668.1;source_transcript_name=CDY19P-201;source_gene=ENSG00000237823.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237823.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000411668.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY19P;transcript_id=HG003_chrY_T0001849;gene_id=HG003_chrY_G0000659;Parent=HG003_chrY_T0001849;transcript_name=HG003_chrY_T0001849;gene_name=CDY19P;ID=exon:HG003_chrY_T0001849:0;Name=CDY19P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24425716	24426014	.	-	.	source_transcript=ENST00000411668.1;source_transcript_name=CDY19P-201;source_gene=ENSG00000237823.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237823.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000411668.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY19P;transcript_id=HG003_chrY_T0001849;gene_id=HG003_chrY_G0000659;Parent=HG003_chrY_T0001849;transcript_name=HG003_chrY_T0001849;gene_name=CDY19P;ID=intron:HG003_chrY_T0001849:0;Name=CDY19P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24426015	24426185	.	-	.	source_transcript=ENST00000411668.1;source_transcript_name=CDY19P-201;source_gene=ENSG00000237823.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237823.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000411668.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411668.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY19P;transcript_id=HG003_chrY_T0001849;gene_id=HG003_chrY_G0000659;Parent=HG003_chrY_T0001849;transcript_name=HG003_chrY_T0001849;gene_name=CDY19P;ID=exon:HG003_chrY_T0001849:1;Name=CDY19P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24439942	24448596	.	+	.	source_gene_common_name=USP9YP36;source_gene=ENSG00000229709.1;gene_id=HG003_chrY_G0000660;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP36;gene_sources=liftoff;ID=HG003_chrY_G0000660;Name=USP9YP36
HG003_chrY	CAT	transcript	24439942	24448596	1000	+	.	source_transcript=ENST00000424581.1;source_transcript_name=USP9YP36-201;source_gene=ENSG00000229709.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229709.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424581.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424581.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP36;transcript_id=HG003_chrY_T0001850;gene_id=HG003_chrY_G0000660;Parent=HG003_chrY_G0000660;transcript_name=HG003_chrY_T0001850;gene_name=USP9YP36;ID=HG003_chrY_T0001850;Name=USP9YP36
HG003_chrY	CAT	exon	24439942	24440147	.	+	.	source_transcript=ENST00000424581.1;source_transcript_name=USP9YP36-201;source_gene=ENSG00000229709.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229709.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424581.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424581.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP36;transcript_id=HG003_chrY_T0001850;gene_id=HG003_chrY_G0000660;Parent=HG003_chrY_T0001850;transcript_name=HG003_chrY_T0001850;gene_name=USP9YP36;ID=exon:HG003_chrY_T0001850:0;Name=USP9YP36;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24440148	24442310	.	+	.	source_transcript=ENST00000424581.1;source_transcript_name=USP9YP36-201;source_gene=ENSG00000229709.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229709.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424581.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424581.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP36;transcript_id=HG003_chrY_T0001850;gene_id=HG003_chrY_G0000660;Parent=HG003_chrY_T0001850;transcript_name=HG003_chrY_T0001850;gene_name=USP9YP36;ID=intron:HG003_chrY_T0001850:0;Name=USP9YP36;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24442311	24442534	.	+	.	source_transcript=ENST00000424581.1;source_transcript_name=USP9YP36-201;source_gene=ENSG00000229709.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229709.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424581.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424581.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP36;transcript_id=HG003_chrY_T0001850;gene_id=HG003_chrY_G0000660;Parent=HG003_chrY_T0001850;transcript_name=HG003_chrY_T0001850;gene_name=USP9YP36;ID=exon:HG003_chrY_T0001850:1;Name=USP9YP36;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24442535	24444338	.	+	.	source_transcript=ENST00000424581.1;source_transcript_name=USP9YP36-201;source_gene=ENSG00000229709.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229709.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424581.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424581.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP36;transcript_id=HG003_chrY_T0001850;gene_id=HG003_chrY_G0000660;Parent=HG003_chrY_T0001850;transcript_name=HG003_chrY_T0001850;gene_name=USP9YP36;ID=intron:HG003_chrY_T0001850:1;Name=USP9YP36;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24444339	24444517	.	+	.	source_transcript=ENST00000424581.1;source_transcript_name=USP9YP36-201;source_gene=ENSG00000229709.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229709.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424581.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424581.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP36;transcript_id=HG003_chrY_T0001850;gene_id=HG003_chrY_G0000660;Parent=HG003_chrY_T0001850;transcript_name=HG003_chrY_T0001850;gene_name=USP9YP36;ID=exon:HG003_chrY_T0001850:2;Name=USP9YP36;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24444518	24446329	.	+	.	source_transcript=ENST00000424581.1;source_transcript_name=USP9YP36-201;source_gene=ENSG00000229709.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229709.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424581.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424581.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP36;transcript_id=HG003_chrY_T0001850;gene_id=HG003_chrY_G0000660;Parent=HG003_chrY_T0001850;transcript_name=HG003_chrY_T0001850;gene_name=USP9YP36;ID=intron:HG003_chrY_T0001850:2;Name=USP9YP36;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24446330	24446419	.	+	.	source_transcript=ENST00000424581.1;source_transcript_name=USP9YP36-201;source_gene=ENSG00000229709.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229709.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424581.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424581.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP36;transcript_id=HG003_chrY_T0001850;gene_id=HG003_chrY_G0000660;Parent=HG003_chrY_T0001850;transcript_name=HG003_chrY_T0001850;gene_name=USP9YP36;ID=exon:HG003_chrY_T0001850:3;Name=USP9YP36;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24446420	24448466	.	+	.	source_transcript=ENST00000424581.1;source_transcript_name=USP9YP36-201;source_gene=ENSG00000229709.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229709.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424581.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424581.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP36;transcript_id=HG003_chrY_T0001850;gene_id=HG003_chrY_G0000660;Parent=HG003_chrY_T0001850;transcript_name=HG003_chrY_T0001850;gene_name=USP9YP36;ID=intron:HG003_chrY_T0001850:3;Name=USP9YP36;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24448467	24448596	.	+	.	source_transcript=ENST00000424581.1;source_transcript_name=USP9YP36-201;source_gene=ENSG00000229709.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229709.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000424581.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000424581.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP36;transcript_id=HG003_chrY_T0001850;gene_id=HG003_chrY_G0000660;Parent=HG003_chrY_T0001850;transcript_name=HG003_chrY_T0001850;gene_name=USP9YP36;ID=exon:HG003_chrY_T0001850:4;Name=USP9YP36;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24450475	24452497	.	-	.	source_gene_common_name=USP9YP33;source_gene=ENSG00000232064.1;gene_id=HG003_chrY_G0000661;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP33;gene_sources=liftoff;ID=HG003_chrY_G0000661;Name=USP9YP33
HG003_chrY	CAT	transcript	24450475	24452497	1000	-	.	source_transcript=ENST00000412220.1;source_transcript_name=USP9YP33-201;source_gene=ENSG00000232064.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232064.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412220.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP33;transcript_id=HG003_chrY_T0001851;gene_id=HG003_chrY_G0000661;Parent=HG003_chrY_G0000661;transcript_name=HG003_chrY_T0001851;gene_name=USP9YP33;ID=HG003_chrY_T0001851;Name=USP9YP33
HG003_chrY	CAT	exon	24450475	24450665	.	-	.	source_transcript=ENST00000412220.1;source_transcript_name=USP9YP33-201;source_gene=ENSG00000232064.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232064.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412220.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP33;transcript_id=HG003_chrY_T0001851;gene_id=HG003_chrY_G0000661;Parent=HG003_chrY_T0001851;transcript_name=HG003_chrY_T0001851;gene_name=USP9YP33;ID=exon:HG003_chrY_T0001851:0;Name=USP9YP33;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24450666	24452267	.	-	.	source_transcript=ENST00000412220.1;source_transcript_name=USP9YP33-201;source_gene=ENSG00000232064.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232064.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412220.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP33;transcript_id=HG003_chrY_T0001851;gene_id=HG003_chrY_G0000661;Parent=HG003_chrY_T0001851;transcript_name=HG003_chrY_T0001851;gene_name=USP9YP33;ID=intron:HG003_chrY_T0001851:0;Name=USP9YP33;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24452268	24452497	.	-	.	source_transcript=ENST00000412220.1;source_transcript_name=USP9YP33-201;source_gene=ENSG00000232064.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232064.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412220.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412220.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP33;transcript_id=HG003_chrY_T0001851;gene_id=HG003_chrY_G0000661;Parent=HG003_chrY_T0001851;transcript_name=HG003_chrY_T0001851;gene_name=USP9YP33;ID=exon:HG003_chrY_T0001851:1;Name=USP9YP33;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24478801	24480410	.	+	.	source_gene_common_name=CDY20P;source_gene=ENSG00000225609.1;gene_id=HG003_chrY_G0000662;gene_biotype=unprocessed_pseudogene;gene_name=CDY20P;gene_sources=liftoff;ID=HG003_chrY_G0000662;Name=CDY20P
HG003_chrY	CAT	transcript	24478801	24480410	1000	+	.	source_transcript=ENST00000447528.1;source_transcript_name=CDY20P-201;source_gene=ENSG00000225609.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225609.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447528.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447528.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY20P;transcript_id=HG003_chrY_T0001852;gene_id=HG003_chrY_G0000662;Parent=HG003_chrY_G0000662;transcript_name=HG003_chrY_T0001852;gene_name=CDY20P;ID=HG003_chrY_T0001852;Name=CDY20P
HG003_chrY	CAT	exon	24478801	24478866	.	+	.	source_transcript=ENST00000447528.1;source_transcript_name=CDY20P-201;source_gene=ENSG00000225609.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225609.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447528.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY20P;transcript_id=HG003_chrY_T0001852;gene_id=HG003_chrY_G0000662;Parent=HG003_chrY_T0001852;transcript_name=HG003_chrY_T0001852;gene_name=CDY20P;ID=exon:HG003_chrY_T0001852:0;Name=CDY20P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24478867	24479197	.	+	.	source_transcript=ENST00000447528.1;source_transcript_name=CDY20P-201;source_gene=ENSG00000225609.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225609.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447528.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY20P;transcript_id=HG003_chrY_T0001852;gene_id=HG003_chrY_G0000662;Parent=HG003_chrY_T0001852;transcript_name=HG003_chrY_T0001852;gene_name=CDY20P;ID=intron:HG003_chrY_T0001852:0;Name=CDY20P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24479198	24480410	.	+	.	source_transcript=ENST00000447528.1;source_transcript_name=CDY20P-201;source_gene=ENSG00000225609.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225609.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000447528.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000447528.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY20P;transcript_id=HG003_chrY_T0001852;gene_id=HG003_chrY_G0000662;Parent=HG003_chrY_T0001852;transcript_name=HG003_chrY_T0001852;gene_name=CDY20P;ID=exon:HG003_chrY_T0001852:1;Name=CDY20P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24482274	24485059	.	+	.	source_gene_common_name=CDY1;source_gene=ENSG00000172288.8;gene_id=HG003_chrY_G0000663;gene_biotype=protein_coding;gene_name=CDY1;gene_sources=liftoff;ID=HG003_chrY_G0000663;Name=CDY1
HG003_chrY	CAT	transcript	24482274	24485059	9990	+	.	source_transcript=ENST00000306609.5;source_transcript_name=CDY1-201;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306609.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000306609.5;transcript_score=299.94;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001853;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_G0000663;transcript_name=HG003_chrY_T0001853;gene_name=CDY1;ID=HG003_chrY_T0001853;Name=CDY1
HG003_chrY	CAT	exon	24482274	24484191	.	+	.	source_transcript=ENST00000306609.5;source_transcript_name=CDY1-201;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306609.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000306609.5;transcript_score=299.94;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001853;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_T0001853;transcript_name=HG003_chrY_T0001853;gene_name=CDY1;ID=exon:HG003_chrY_T0001853:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	24482600	24484191	.	+	0	source_transcript=ENST00000306609.5;source_transcript_name=CDY1-201;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306609.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000306609.5;transcript_score=299.94;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001853;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_T0001853;transcript_name=HG003_chrY_T0001853;gene_name=CDY1;ID=CDS:HG003_chrY_T0001853:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	24482600	24482602	.	+	0	source_transcript=ENST00000306609.5;source_transcript_name=CDY1-201;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306609.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000306609.5;transcript_score=299.94;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001853;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_T0001853;transcript_name=HG003_chrY_T0001853;gene_name=CDY1;ID=start_codon:HG003_chrY_T0001853;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24484192	24484611	.	+	.	source_transcript=ENST00000306609.5;source_transcript_name=CDY1-201;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306609.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000306609.5;transcript_score=299.94;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001853;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_T0001853;transcript_name=HG003_chrY_T0001853;gene_name=CDY1;ID=intron:HG003_chrY_T0001853:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24484612	24485059	.	+	.	source_transcript=ENST00000306609.5;source_transcript_name=CDY1-201;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306609.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000306609.5;transcript_score=299.94;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001853;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_T0001853;transcript_name=HG003_chrY_T0001853;gene_name=CDY1;ID=exon:HG003_chrY_T0001853:1;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	24484612	24484684	.	+	1	source_transcript=ENST00000306609.5;source_transcript_name=CDY1-201;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306609.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000306609.5;transcript_score=299.94;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001853;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_T0001853;transcript_name=HG003_chrY_T0001853;gene_name=CDY1;ID=CDS:HG003_chrY_T0001853:1;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	24484682	24484684	.	+	0	source_transcript=ENST00000306609.5;source_transcript_name=CDY1-201;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306609.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000306609.5;transcript_score=299.94;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001853;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_T0001853;transcript_name=HG003_chrY_T0001853;gene_name=CDY1;ID=stop_codon:HG003_chrY_T0001853;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24482319	24484495	9990	+	.	source_transcript=ENST00000361963.3;source_transcript_name=CDY1-202;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361963.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000361963.3;transcript_score=299.938;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001854;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_G0000663;transcript_name=HG003_chrY_T0001854;gene_name=CDY1;ID=HG003_chrY_T0001854;Name=CDY1
HG003_chrY	CAT	exon	24482319	24484495	.	+	.	source_transcript=ENST00000361963.3;source_transcript_name=CDY1-202;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361963.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000361963.3;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001854;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_T0001854;transcript_name=HG003_chrY_T0001854;gene_name=CDY1;ID=exon:HG003_chrY_T0001854:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	24482600	24484222	.	+	0	source_transcript=ENST00000361963.3;source_transcript_name=CDY1-202;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361963.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000361963.3;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001854;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_T0001854;transcript_name=HG003_chrY_T0001854;gene_name=CDY1;ID=CDS:HG003_chrY_T0001854:0;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	24482600	24482602	.	+	0	source_transcript=ENST00000361963.3;source_transcript_name=CDY1-202;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361963.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000361963.3;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001854;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_T0001854;transcript_name=HG003_chrY_T0001854;gene_name=CDY1;ID=start_codon:HG003_chrY_T0001854;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	24484220	24484222	.	+	0	source_transcript=ENST00000361963.3;source_transcript_name=CDY1-202;source_gene=ENSG00000172288.8;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172288.8;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000361963.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000361963.3;transcript_score=299.938;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1;transcript_id=HG003_chrY_T0001854;gene_id=HG003_chrY_G0000663;Parent=HG003_chrY_T0001854;transcript_name=HG003_chrY_T0001854;gene_name=CDY1;ID=stop_codon:HG003_chrY_T0001854;Name=CDY1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24523064	24523390	.	+	.	source_gene_common_name=ELOCP10;source_gene=ENSG00000234081.1;gene_id=HG003_chrY_G0000664;gene_biotype=processed_pseudogene;gene_name=ELOCP10;gene_sources=liftoff;ID=HG003_chrY_G0000664;Name=ELOCP10
HG003_chrY	CAT	transcript	24523064	24523390	1000	+	.	source_transcript=ENST00000440624.1;source_transcript_name=ELOCP10-201;source_gene=ENSG00000234081.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234081.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000440624.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440624.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP10;transcript_id=HG003_chrY_T0001855;gene_id=HG003_chrY_G0000664;Parent=HG003_chrY_G0000664;transcript_name=HG003_chrY_T0001855;gene_name=ELOCP10;ID=HG003_chrY_T0001855;Name=ELOCP10
HG003_chrY	CAT	exon	24523064	24523390	.	+	.	source_transcript=ENST00000440624.1;source_transcript_name=ELOCP10-201;source_gene=ENSG00000234081.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000234081.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000440624.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440624.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP10;transcript_id=HG003_chrY_T0001855;gene_id=HG003_chrY_G0000664;Parent=HG003_chrY_T0001855;transcript_name=HG003_chrY_T0001855;gene_name=ELOCP10;ID=exon:HG003_chrY_T0001855:0;Name=ELOCP10;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24535223	24557515	.	-	.	source_gene_common_name=OFD1P13Y;source_gene=ENSG00000225287.1;gene_id=HG003_chrY_G0000665;gene_biotype=unprocessed_pseudogene;gene_name=OFD1P13Y;gene_sources=liftoff;ID=HG003_chrY_G0000665;Name=OFD1P13Y
HG003_chrY	CAT	transcript	24535223	24557515	1000	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_G0000665;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=HG003_chrY_T0001856;Name=OFD1P13Y
HG003_chrY	CAT	exon	24535223	24535371	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=exon:HG003_chrY_T0001856:0;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24535372	24536985	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=intron:HG003_chrY_T0001856:0;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24536986	24537077	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=exon:HG003_chrY_T0001856:1;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24537078	24538182	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=intron:HG003_chrY_T0001856:1;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24538183	24538256	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=exon:HG003_chrY_T0001856:2;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24538257	24540032	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=intron:HG003_chrY_T0001856:2;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24540033	24540149	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=exon:HG003_chrY_T0001856:3;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24540150	24542254	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=intron:HG003_chrY_T0001856:3;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24542255	24542360	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=exon:HG003_chrY_T0001856:4;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24542361	24545404	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=intron:HG003_chrY_T0001856:4;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24545405	24545540	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=exon:HG003_chrY_T0001856:5;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24545541	24545879	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=intron:HG003_chrY_T0001856:5;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24545880	24546012	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=exon:HG003_chrY_T0001856:6;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24546013	24553489	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=intron:HG003_chrY_T0001856:6;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24553490	24553548	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=exon:HG003_chrY_T0001856:7;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24553549	24553633	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=intron:HG003_chrY_T0001856:7;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24553634	24553702	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=exon:HG003_chrY_T0001856:8;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24553703	24555910	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=intron:HG003_chrY_T0001856:8;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24555911	24556109	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=exon:HG003_chrY_T0001856:9;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24556110	24557417	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=intron:HG003_chrY_T0001856:9;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24557418	24557515	.	-	.	source_transcript=ENST00000431179.1;source_transcript_name=OFD1P13Y-201;source_gene=ENSG00000225287.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225287.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431179.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431179.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P13Y;transcript_id=HG003_chrY_T0001856;gene_id=HG003_chrY_G0000665;Parent=HG003_chrY_T0001856;transcript_name=HG003_chrY_T0001856;gene_name=OFD1P13Y;ID=exon:HG003_chrY_T0001856:10;Name=OFD1P13Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24559620	24562731	.	+	.	source_gene_common_name=TRAPPC2P5;source_gene=ENSG00000225256.1;gene_id=HG003_chrY_G0000666;gene_biotype=unprocessed_pseudogene;gene_name=TRAPPC2P5;gene_sources=liftoff;ID=HG003_chrY_G0000666;Name=TRAPPC2P5
HG003_chrY	CAT	transcript	24559620	24562731	1000	+	.	source_transcript=ENST00000426293.1;source_transcript_name=TRAPPC2P5-201;source_gene=ENSG00000225256.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225256.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426293.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P5;transcript_id=HG003_chrY_T0001857;gene_id=HG003_chrY_G0000666;Parent=HG003_chrY_G0000666;transcript_name=HG003_chrY_T0001857;gene_name=TRAPPC2P5;ID=HG003_chrY_T0001857;Name=TRAPPC2P5
HG003_chrY	CAT	exon	24559620	24559712	.	+	.	source_transcript=ENST00000426293.1;source_transcript_name=TRAPPC2P5-201;source_gene=ENSG00000225256.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225256.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426293.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P5;transcript_id=HG003_chrY_T0001857;gene_id=HG003_chrY_G0000666;Parent=HG003_chrY_T0001857;transcript_name=HG003_chrY_T0001857;gene_name=TRAPPC2P5;ID=exon:HG003_chrY_T0001857:0;Name=TRAPPC2P5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24559713	24562075	.	+	.	source_transcript=ENST00000426293.1;source_transcript_name=TRAPPC2P5-201;source_gene=ENSG00000225256.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225256.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426293.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P5;transcript_id=HG003_chrY_T0001857;gene_id=HG003_chrY_G0000666;Parent=HG003_chrY_T0001857;transcript_name=HG003_chrY_T0001857;gene_name=TRAPPC2P5;ID=intron:HG003_chrY_T0001857:0;Name=TRAPPC2P5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24562076	24562210	.	+	.	source_transcript=ENST00000426293.1;source_transcript_name=TRAPPC2P5-201;source_gene=ENSG00000225256.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225256.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426293.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P5;transcript_id=HG003_chrY_T0001857;gene_id=HG003_chrY_G0000666;Parent=HG003_chrY_T0001857;transcript_name=HG003_chrY_T0001857;gene_name=TRAPPC2P5;ID=exon:HG003_chrY_T0001857:1;Name=TRAPPC2P5;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24562211	24562651	.	+	.	source_transcript=ENST00000426293.1;source_transcript_name=TRAPPC2P5-201;source_gene=ENSG00000225256.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225256.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426293.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P5;transcript_id=HG003_chrY_T0001857;gene_id=HG003_chrY_G0000666;Parent=HG003_chrY_T0001857;transcript_name=HG003_chrY_T0001857;gene_name=TRAPPC2P5;ID=intron:HG003_chrY_T0001857:1;Name=TRAPPC2P5;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24562652	24562731	.	+	.	source_transcript=ENST00000426293.1;source_transcript_name=TRAPPC2P5-201;source_gene=ENSG00000225256.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225256.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426293.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426293.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P5;transcript_id=HG003_chrY_T0001857;gene_id=HG003_chrY_G0000666;Parent=HG003_chrY_T0001857;transcript_name=HG003_chrY_T0001857;gene_name=TRAPPC2P5;ID=exon:HG003_chrY_T0001857:2;Name=TRAPPC2P5;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24570077	24573726	.	-	.	source_gene_common_name=RAB9AP2;source_gene=ENSG00000223856.1;gene_id=HG003_chrY_G0000667;gene_biotype=unprocessed_pseudogene;gene_name=RAB9AP2;gene_sources=liftoff;ID=HG003_chrY_G0000667;Name=RAB9AP2
HG003_chrY	CAT	transcript	24570077	24573726	1000	-	.	source_transcript=ENST00000443911.1;source_transcript_name=RAB9AP2-201;source_gene=ENSG00000223856.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223856.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443911.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443911.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP2;transcript_id=HG003_chrY_T0001858;gene_id=HG003_chrY_G0000667;Parent=HG003_chrY_G0000667;transcript_name=HG003_chrY_T0001858;gene_name=RAB9AP2;ID=HG003_chrY_T0001858;Name=RAB9AP2
HG003_chrY	CAT	exon	24570077	24570439	.	-	.	source_transcript=ENST00000443911.1;source_transcript_name=RAB9AP2-201;source_gene=ENSG00000223856.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223856.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443911.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443911.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP2;transcript_id=HG003_chrY_T0001858;gene_id=HG003_chrY_G0000667;Parent=HG003_chrY_T0001858;transcript_name=HG003_chrY_T0001858;gene_name=RAB9AP2;ID=exon:HG003_chrY_T0001858:0;Name=RAB9AP2;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24570440	24573492	.	-	.	source_transcript=ENST00000443911.1;source_transcript_name=RAB9AP2-201;source_gene=ENSG00000223856.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223856.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443911.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443911.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP2;transcript_id=HG003_chrY_T0001858;gene_id=HG003_chrY_G0000667;Parent=HG003_chrY_T0001858;transcript_name=HG003_chrY_T0001858;gene_name=RAB9AP2;ID=intron:HG003_chrY_T0001858:0;Name=RAB9AP2;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24573493	24573726	.	-	.	source_transcript=ENST00000443911.1;source_transcript_name=RAB9AP2-201;source_gene=ENSG00000223856.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223856.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000443911.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000443911.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP2;transcript_id=HG003_chrY_T0001858;gene_id=HG003_chrY_G0000667;Parent=HG003_chrY_T0001858;transcript_name=HG003_chrY_T0001858;gene_name=RAB9AP2;ID=exon:HG003_chrY_T0001858:1;Name=RAB9AP2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24583189	24584359	.	+	.	source_gene_common_name=USP9YP30;source_gene=ENSG00000235004.1;gene_id=HG003_chrY_G0000668;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP30;gene_sources=liftoff;ID=HG003_chrY_G0000668;Name=USP9YP30
HG003_chrY	CAT	transcript	24583189	24584359	1000	+	.	source_transcript=ENST00000430729.1;source_transcript_name=USP9YP30-201;source_gene=ENSG00000235004.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235004.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430729.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP30;transcript_id=HG003_chrY_T0001859;gene_id=HG003_chrY_G0000668;Parent=HG003_chrY_G0000668;transcript_name=HG003_chrY_T0001859;gene_name=USP9YP30;ID=HG003_chrY_T0001859;Name=USP9YP30
HG003_chrY	CAT	exon	24583189	24583354	.	+	.	source_transcript=ENST00000430729.1;source_transcript_name=USP9YP30-201;source_gene=ENSG00000235004.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235004.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP30;transcript_id=HG003_chrY_T0001859;gene_id=HG003_chrY_G0000668;Parent=HG003_chrY_T0001859;transcript_name=HG003_chrY_T0001859;gene_name=USP9YP30;ID=exon:HG003_chrY_T0001859:0;Name=USP9YP30;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24583355	24583689	.	+	.	source_transcript=ENST00000430729.1;source_transcript_name=USP9YP30-201;source_gene=ENSG00000235004.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235004.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP30;transcript_id=HG003_chrY_T0001859;gene_id=HG003_chrY_G0000668;Parent=HG003_chrY_T0001859;transcript_name=HG003_chrY_T0001859;gene_name=USP9YP30;ID=intron:HG003_chrY_T0001859:0;Name=USP9YP30;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24583690	24583883	.	+	.	source_transcript=ENST00000430729.1;source_transcript_name=USP9YP30-201;source_gene=ENSG00000235004.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235004.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP30;transcript_id=HG003_chrY_T0001859;gene_id=HG003_chrY_G0000668;Parent=HG003_chrY_T0001859;transcript_name=HG003_chrY_T0001859;gene_name=USP9YP30;ID=exon:HG003_chrY_T0001859:1;Name=USP9YP30;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24583884	24584264	.	+	.	source_transcript=ENST00000430729.1;source_transcript_name=USP9YP30-201;source_gene=ENSG00000235004.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235004.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP30;transcript_id=HG003_chrY_T0001859;gene_id=HG003_chrY_G0000668;Parent=HG003_chrY_T0001859;transcript_name=HG003_chrY_T0001859;gene_name=USP9YP30;ID=intron:HG003_chrY_T0001859:1;Name=USP9YP30;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24584265	24584359	.	+	.	source_transcript=ENST00000430729.1;source_transcript_name=USP9YP30-201;source_gene=ENSG00000235004.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235004.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000430729.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000430729.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP30;transcript_id=HG003_chrY_T0001859;gene_id=HG003_chrY_G0000668;Parent=HG003_chrY_T0001859;transcript_name=HG003_chrY_T0001859;gene_name=USP9YP30;ID=exon:HG003_chrY_T0001859:2;Name=USP9YP30;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24583515	24583668	.	+	.	source_gene_common_name=RNU1-107P;source_gene=ENSG00000252426.1;gene_id=HG003_chrY_G0000669;gene_biotype=snRNA;gene_name=RNU1-107P;gene_sources=liftoff;ID=HG003_chrY_G0000669;Name=RNU1-107P
HG003_chrY	CAT	transcript	24583515	24583668	1000	+	.	source_transcript=ENST00000516617.1;source_transcript_name=RNU1-107P-201;source_gene=ENSG00000252426.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252426.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516617.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-107P;transcript_id=HG003_chrY_T0001860;gene_id=HG003_chrY_G0000669;Parent=HG003_chrY_G0000669;transcript_name=HG003_chrY_T0001860;gene_name=RNU1-107P;ID=HG003_chrY_T0001860;Name=RNU1-107P
HG003_chrY	CAT	exon	24583515	24583668	.	+	.	source_transcript=ENST00000516617.1;source_transcript_name=RNU1-107P-201;source_gene=ENSG00000252426.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252426.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516617.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516617.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-107P;transcript_id=HG003_chrY_T0001860;gene_id=HG003_chrY_G0000669;Parent=HG003_chrY_T0001860;transcript_name=HG003_chrY_T0001860;gene_name=RNU1-107P;ID=exon:HG003_chrY_T0001860:0;Name=RNU1-107P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24588663	24593558	.	+	.	source_gene_common_name=TTTY3;source_gene=ENSG00000231141.1;gene_id=HG003_chrY_G0000670;gene_biotype=lncRNA;gene_name=TTTY3;gene_sources=liftoff;ID=HG003_chrY_G0000670;Name=TTTY3
HG003_chrY	CAT	transcript	24588663	24593558	1000	+	.	source_transcript=ENST00000417334.1;source_transcript_name=TTTY3-201;source_gene=ENSG00000231141.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231141.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417334.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;transcript_id=HG003_chrY_T0001861;gene_id=HG003_chrY_G0000670;Parent=HG003_chrY_G0000670;transcript_name=HG003_chrY_T0001861;gene_name=TTTY3;ID=HG003_chrY_T0001861;Name=TTTY3
HG003_chrY	CAT	exon	24588663	24588766	.	+	.	source_transcript=ENST00000417334.1;source_transcript_name=TTTY3-201;source_gene=ENSG00000231141.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231141.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;transcript_id=HG003_chrY_T0001861;gene_id=HG003_chrY_G0000670;Parent=HG003_chrY_T0001861;transcript_name=HG003_chrY_T0001861;gene_name=TTTY3;ID=exon:HG003_chrY_T0001861:0;Name=TTTY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24588767	24590964	.	+	.	source_transcript=ENST00000417334.1;source_transcript_name=TTTY3-201;source_gene=ENSG00000231141.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231141.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;transcript_id=HG003_chrY_T0001861;gene_id=HG003_chrY_G0000670;Parent=HG003_chrY_T0001861;transcript_name=HG003_chrY_T0001861;gene_name=TTTY3;ID=intron:HG003_chrY_T0001861:0;Name=TTTY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24590965	24591099	.	+	.	source_transcript=ENST00000417334.1;source_transcript_name=TTTY3-201;source_gene=ENSG00000231141.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231141.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;transcript_id=HG003_chrY_T0001861;gene_id=HG003_chrY_G0000670;Parent=HG003_chrY_T0001861;transcript_name=HG003_chrY_T0001861;gene_name=TTTY3;ID=exon:HG003_chrY_T0001861:1;Name=TTTY3;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24591100	24593453	.	+	.	source_transcript=ENST00000417334.1;source_transcript_name=TTTY3-201;source_gene=ENSG00000231141.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231141.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;transcript_id=HG003_chrY_T0001861;gene_id=HG003_chrY_G0000670;Parent=HG003_chrY_T0001861;transcript_name=HG003_chrY_T0001861;gene_name=TTTY3;ID=intron:HG003_chrY_T0001861:1;Name=TTTY3;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24593454	24593558	.	+	.	source_transcript=ENST00000417334.1;source_transcript_name=TTTY3-201;source_gene=ENSG00000231141.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000231141.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000417334.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417334.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3;transcript_id=HG003_chrY_T0001861;gene_id=HG003_chrY_G0000670;Parent=HG003_chrY_T0001861;transcript_name=HG003_chrY_T0001861;gene_name=TTTY3;ID=exon:HG003_chrY_T0001861:2;Name=TTTY3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24590184	24595330	.	-	.	source_gene_common_name=USP9YP9;source_gene=ENSG00000232614.1;gene_id=HG003_chrY_G0000671;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP9;gene_sources=liftoff;ID=HG003_chrY_G0000671;Name=USP9YP9
HG003_chrY	CAT	transcript	24590184	24595330	1000	-	.	source_transcript=ENST00000429406.1;source_transcript_name=USP9YP9-201;source_gene=ENSG00000232614.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232614.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429406.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429406.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP9;transcript_id=HG003_chrY_T0001862;gene_id=HG003_chrY_G0000671;Parent=HG003_chrY_G0000671;transcript_name=HG003_chrY_T0001862;gene_name=USP9YP9;ID=HG003_chrY_T0001862;Name=USP9YP9
HG003_chrY	CAT	exon	24590184	24590376	.	-	.	source_transcript=ENST00000429406.1;source_transcript_name=USP9YP9-201;source_gene=ENSG00000232614.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232614.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429406.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429406.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP9;transcript_id=HG003_chrY_T0001862;gene_id=HG003_chrY_G0000671;Parent=HG003_chrY_T0001862;transcript_name=HG003_chrY_T0001862;gene_name=USP9YP9;ID=exon:HG003_chrY_T0001862:0;Name=USP9YP9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24590377	24592009	.	-	.	source_transcript=ENST00000429406.1;source_transcript_name=USP9YP9-201;source_gene=ENSG00000232614.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232614.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429406.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429406.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP9;transcript_id=HG003_chrY_T0001862;gene_id=HG003_chrY_G0000671;Parent=HG003_chrY_T0001862;transcript_name=HG003_chrY_T0001862;gene_name=USP9YP9;ID=intron:HG003_chrY_T0001862:0;Name=USP9YP9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24592010	24592272	.	-	.	source_transcript=ENST00000429406.1;source_transcript_name=USP9YP9-201;source_gene=ENSG00000232614.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232614.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429406.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429406.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP9;transcript_id=HG003_chrY_T0001862;gene_id=HG003_chrY_G0000671;Parent=HG003_chrY_T0001862;transcript_name=HG003_chrY_T0001862;gene_name=USP9YP9;ID=exon:HG003_chrY_T0001862:1;Name=USP9YP9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24592273	24593396	.	-	.	source_transcript=ENST00000429406.1;source_transcript_name=USP9YP9-201;source_gene=ENSG00000232614.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232614.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429406.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429406.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP9;transcript_id=HG003_chrY_T0001862;gene_id=HG003_chrY_G0000671;Parent=HG003_chrY_T0001862;transcript_name=HG003_chrY_T0001862;gene_name=USP9YP9;ID=intron:HG003_chrY_T0001862:1;Name=USP9YP9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24593397	24593618	.	-	.	source_transcript=ENST00000429406.1;source_transcript_name=USP9YP9-201;source_gene=ENSG00000232614.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232614.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429406.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429406.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP9;transcript_id=HG003_chrY_T0001862;gene_id=HG003_chrY_G0000671;Parent=HG003_chrY_T0001862;transcript_name=HG003_chrY_T0001862;gene_name=USP9YP9;ID=exon:HG003_chrY_T0001862:2;Name=USP9YP9;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24593619	24595293	.	-	.	source_transcript=ENST00000429406.1;source_transcript_name=USP9YP9-201;source_gene=ENSG00000232614.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232614.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429406.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429406.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP9;transcript_id=HG003_chrY_T0001862;gene_id=HG003_chrY_G0000671;Parent=HG003_chrY_T0001862;transcript_name=HG003_chrY_T0001862;gene_name=USP9YP9;ID=intron:HG003_chrY_T0001862:2;Name=USP9YP9;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24595294	24595330	.	-	.	source_transcript=ENST00000429406.1;source_transcript_name=USP9YP9-201;source_gene=ENSG00000232614.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232614.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000429406.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000429406.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP9;transcript_id=HG003_chrY_T0001862;gene_id=HG003_chrY_G0000671;Parent=HG003_chrY_T0001862;transcript_name=HG003_chrY_T0001862;gene_name=USP9YP9;ID=exon:HG003_chrY_T0001862:3;Name=USP9YP9;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24608766	24610377	.	-	.	source_gene_common_name=USP9YP19;source_gene=ENSG00000225326.1;gene_id=HG003_chrY_G0000672;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP19;gene_sources=liftoff;ID=HG003_chrY_G0000672;Name=USP9YP19
HG003_chrY	CAT	transcript	24608766	24610377	1000	-	.	source_transcript=ENST00000412165.1;source_transcript_name=USP9YP19-201;source_gene=ENSG00000225326.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225326.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412165.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP19;transcript_id=HG003_chrY_T0001863;gene_id=HG003_chrY_G0000672;Parent=HG003_chrY_G0000672;transcript_name=HG003_chrY_T0001863;gene_name=USP9YP19;ID=HG003_chrY_T0001863;Name=USP9YP19
HG003_chrY	CAT	exon	24608766	24609032	.	-	.	source_transcript=ENST00000412165.1;source_transcript_name=USP9YP19-201;source_gene=ENSG00000225326.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225326.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412165.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP19;transcript_id=HG003_chrY_T0001863;gene_id=HG003_chrY_G0000672;Parent=HG003_chrY_T0001863;transcript_name=HG003_chrY_T0001863;gene_name=USP9YP19;ID=exon:HG003_chrY_T0001863:0;Name=USP9YP19;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24609033	24610159	.	-	.	source_transcript=ENST00000412165.1;source_transcript_name=USP9YP19-201;source_gene=ENSG00000225326.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225326.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412165.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP19;transcript_id=HG003_chrY_T0001863;gene_id=HG003_chrY_G0000672;Parent=HG003_chrY_T0001863;transcript_name=HG003_chrY_T0001863;gene_name=USP9YP19;ID=intron:HG003_chrY_T0001863:0;Name=USP9YP19;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24610160	24610377	.	-	.	source_transcript=ENST00000412165.1;source_transcript_name=USP9YP19-201;source_gene=ENSG00000225326.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225326.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000412165.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412165.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP19;transcript_id=HG003_chrY_T0001863;gene_id=HG003_chrY_G0000672;Parent=HG003_chrY_T0001863;transcript_name=HG003_chrY_T0001863;gene_name=USP9YP19;ID=exon:HG003_chrY_T0001863:1;Name=USP9YP19;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24612559	24613041	.	+	.	source_gene_common_name=XKRYP4;source_gene=ENSG00000231026.1;gene_id=HG003_chrY_G0000673;gene_biotype=unprocessed_pseudogene;gene_name=XKRYP4;gene_sources=liftoff;ID=HG003_chrY_G0000673;Name=XKRYP4
HG003_chrY	CAT	transcript	24612559	24613041	1000	+	.	source_transcript=ENST00000414395.1;source_transcript_name=XKRYP4-201;source_gene=ENSG00000231026.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231026.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414395.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414395.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP4;transcript_id=HG003_chrY_T0001864;gene_id=HG003_chrY_G0000673;Parent=HG003_chrY_G0000673;transcript_name=HG003_chrY_T0001864;gene_name=XKRYP4;ID=HG003_chrY_T0001864;Name=XKRYP4
HG003_chrY	CAT	exon	24612559	24613041	.	+	.	source_transcript=ENST00000414395.1;source_transcript_name=XKRYP4-201;source_gene=ENSG00000231026.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231026.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414395.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414395.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP4;transcript_id=HG003_chrY_T0001864;gene_id=HG003_chrY_G0000673;Parent=HG003_chrY_T0001864;transcript_name=HG003_chrY_T0001864;gene_name=XKRYP4;ID=exon:HG003_chrY_T0001864:0;Name=XKRYP4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24673189	24674742	.	+	.	source_gene_common_name=CDY22P;source_gene=ENSG00000229343.1;gene_id=HG003_chrY_G0000674;gene_biotype=unprocessed_pseudogene;gene_name=CDY22P;gene_sources=liftoff;ID=HG003_chrY_G0000674;Name=CDY22P
HG003_chrY	CAT	transcript	24673189	24674742	1000	+	.	source_transcript=ENST00000451423.1;source_transcript_name=CDY22P-201;source_gene=ENSG00000229343.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229343.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000451423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451423.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY22P;transcript_id=HG003_chrY_T0001865;gene_id=HG003_chrY_G0000674;Parent=HG003_chrY_G0000674;transcript_name=HG003_chrY_T0001865;gene_name=CDY22P;ID=HG003_chrY_T0001865;Name=CDY22P
HG003_chrY	CAT	exon	24673189	24674742	.	+	.	source_transcript=ENST00000451423.1;source_transcript_name=CDY22P-201;source_gene=ENSG00000229343.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229343.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000451423.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451423.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY22P;transcript_id=HG003_chrY_T0001865;gene_id=HG003_chrY_G0000674;Parent=HG003_chrY_T0001865;transcript_name=HG003_chrY_T0001865;gene_name=CDY22P;ID=exon:HG003_chrY_T0001865:0;Name=CDY22P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24721123	24721448	.	+	.	source_gene_common_name=ELOCP17;source_gene=ENSG00000232695.1;gene_id=HG003_chrY_G0000675;gene_biotype=processed_pseudogene;gene_name=ELOCP17;gene_sources=liftoff;ID=HG003_chrY_G0000675;Name=ELOCP17
HG003_chrY	CAT	transcript	24721123	24721448	1000	+	.	source_transcript=ENST00000414751.1;source_transcript_name=ELOCP17-201;source_gene=ENSG00000232695.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232695.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000414751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414751.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP17;transcript_id=HG003_chrY_T0001866;gene_id=HG003_chrY_G0000675;Parent=HG003_chrY_G0000675;transcript_name=HG003_chrY_T0001866;gene_name=ELOCP17;ID=HG003_chrY_T0001866;Name=ELOCP17
HG003_chrY	CAT	exon	24721123	24721448	.	+	.	source_transcript=ENST00000414751.1;source_transcript_name=ELOCP17-201;source_gene=ENSG00000232695.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232695.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000414751.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414751.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP17;transcript_id=HG003_chrY_T0001866;gene_id=HG003_chrY_G0000675;Parent=HG003_chrY_T0001866;transcript_name=HG003_chrY_T0001866;gene_name=ELOCP17;ID=exon:HG003_chrY_T0001866:0;Name=ELOCP17;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24732119	24758857	.	-	.	source_gene_common_name=OFD1P18Y;source_gene=ENSG00000235511.1;gene_id=HG003_chrY_G0000676;gene_biotype=unprocessed_pseudogene;gene_name=OFD1P18Y;gene_sources=liftoff;ID=HG003_chrY_G0000676;Name=OFD1P18Y
HG003_chrY	CAT	transcript	24732119	24758857	1000	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_G0000676;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=HG003_chrY_T0001867;Name=OFD1P18Y
HG003_chrY	CAT	exon	24732119	24732190	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=exon:HG003_chrY_T0001867:0;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24732191	24733292	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=intron:HG003_chrY_T0001867:0;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24733293	24733366	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=exon:HG003_chrY_T0001867:1;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24733367	24735152	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=intron:HG003_chrY_T0001867:1;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24735153	24735271	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=exon:HG003_chrY_T0001867:2;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24735272	24737918	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=intron:HG003_chrY_T0001867:2;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24737919	24738024	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=exon:HG003_chrY_T0001867:3;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24738025	24741070	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=intron:HG003_chrY_T0001867:3;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24741071	24741218	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=exon:HG003_chrY_T0001867:4;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24741219	24741562	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=intron:HG003_chrY_T0001867:4;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24741563	24741697	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=exon:HG003_chrY_T0001867:5;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24741698	24757334	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=intron:HG003_chrY_T0001867:5;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24757335	24757540	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=exon:HG003_chrY_T0001867:6;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24757541	24758758	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=intron:HG003_chrY_T0001867:6;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24758759	24758857	.	-	.	source_transcript=ENST00000420889.1;source_transcript_name=OFD1P18Y-201;source_gene=ENSG00000235511.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000235511.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420889.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420889.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P18Y;transcript_id=HG003_chrY_T0001867;gene_id=HG003_chrY_G0000676;Parent=HG003_chrY_T0001867;transcript_name=HG003_chrY_T0001867;gene_name=OFD1P18Y;ID=exon:HG003_chrY_T0001867:7;Name=OFD1P18Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24764725	24767457	.	+	.	source_gene_common_name=TRAPPC2P4;source_gene=ENSG00000232914.1;gene_id=HG003_chrY_G0000677;gene_biotype=unprocessed_pseudogene;gene_name=TRAPPC2P4;gene_sources=liftoff;ID=HG003_chrY_G0000677;Name=TRAPPC2P4
HG003_chrY	CAT	transcript	24764725	24767457	1000	+	.	source_transcript=ENST00000421750.1;source_transcript_name=TRAPPC2P4-201;source_gene=ENSG00000232914.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232914.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421750.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P4;transcript_id=HG003_chrY_T0001868;gene_id=HG003_chrY_G0000677;Parent=HG003_chrY_G0000677;transcript_name=HG003_chrY_T0001868;gene_name=TRAPPC2P4;ID=HG003_chrY_T0001868;Name=TRAPPC2P4
HG003_chrY	CAT	exon	24764725	24764817	.	+	.	source_transcript=ENST00000421750.1;source_transcript_name=TRAPPC2P4-201;source_gene=ENSG00000232914.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232914.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P4;transcript_id=HG003_chrY_T0001868;gene_id=HG003_chrY_G0000677;Parent=HG003_chrY_T0001868;transcript_name=HG003_chrY_T0001868;gene_name=TRAPPC2P4;ID=exon:HG003_chrY_T0001868:0;Name=TRAPPC2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24764818	24766771	.	+	.	source_transcript=ENST00000421750.1;source_transcript_name=TRAPPC2P4-201;source_gene=ENSG00000232914.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232914.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P4;transcript_id=HG003_chrY_T0001868;gene_id=HG003_chrY_G0000677;Parent=HG003_chrY_T0001868;transcript_name=HG003_chrY_T0001868;gene_name=TRAPPC2P4;ID=intron:HG003_chrY_T0001868:0;Name=TRAPPC2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24766772	24766916	.	+	.	source_transcript=ENST00000421750.1;source_transcript_name=TRAPPC2P4-201;source_gene=ENSG00000232914.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232914.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P4;transcript_id=HG003_chrY_T0001868;gene_id=HG003_chrY_G0000677;Parent=HG003_chrY_T0001868;transcript_name=HG003_chrY_T0001868;gene_name=TRAPPC2P4;ID=exon:HG003_chrY_T0001868:1;Name=TRAPPC2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24766917	24767364	.	+	.	source_transcript=ENST00000421750.1;source_transcript_name=TRAPPC2P4-201;source_gene=ENSG00000232914.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232914.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P4;transcript_id=HG003_chrY_T0001868;gene_id=HG003_chrY_G0000677;Parent=HG003_chrY_T0001868;transcript_name=HG003_chrY_T0001868;gene_name=TRAPPC2P4;ID=intron:HG003_chrY_T0001868:1;Name=TRAPPC2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24767365	24767457	.	+	.	source_transcript=ENST00000421750.1;source_transcript_name=TRAPPC2P4-201;source_gene=ENSG00000232914.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232914.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421750.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421750.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P4;transcript_id=HG003_chrY_T0001868;gene_id=HG003_chrY_G0000677;Parent=HG003_chrY_T0001868;transcript_name=HG003_chrY_T0001868;gene_name=TRAPPC2P4;ID=exon:HG003_chrY_T0001868:2;Name=TRAPPC2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24778530	24779102	.	-	.	source_gene_common_name=RAB9AP3;source_gene=ENSG00000223655.1;gene_id=HG003_chrY_G0000678;gene_biotype=processed_pseudogene;gene_name=RAB9AP3;gene_sources=liftoff;ID=HG003_chrY_G0000678;Name=RAB9AP3
HG003_chrY	CAT	transcript	24778530	24779102	1000	-	.	source_transcript=ENST00000412737.1;source_transcript_name=RAB9AP3-201;source_gene=ENSG00000223655.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000223655.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000412737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412737.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP3;transcript_id=HG003_chrY_T0001869;gene_id=HG003_chrY_G0000678;Parent=HG003_chrY_G0000678;transcript_name=HG003_chrY_T0001869;gene_name=RAB9AP3;ID=HG003_chrY_T0001869;Name=RAB9AP3
HG003_chrY	CAT	exon	24778530	24779102	.	-	.	source_transcript=ENST00000412737.1;source_transcript_name=RAB9AP3-201;source_gene=ENSG00000223655.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000223655.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000412737.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000412737.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP3;transcript_id=HG003_chrY_T0001869;gene_id=HG003_chrY_G0000678;Parent=HG003_chrY_T0001869;transcript_name=HG003_chrY_T0001869;gene_name=RAB9AP3;ID=exon:HG003_chrY_T0001869:0;Name=RAB9AP3;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24783595	24790036	.	+	.	source_gene_common_name=USP9YP20;source_gene=ENSG00000230854.1;gene_id=HG003_chrY_G0000679;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP20;gene_sources=liftoff;ID=HG003_chrY_G0000679;Name=USP9YP20
HG003_chrY	CAT	transcript	24783595	24790036	1000	+	.	source_transcript=ENST00000419224.1;source_transcript_name=USP9YP20-201;source_gene=ENSG00000230854.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230854.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000419224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419224.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP20;transcript_id=HG003_chrY_T0001870;gene_id=HG003_chrY_G0000679;Parent=HG003_chrY_G0000679;transcript_name=HG003_chrY_T0001870;gene_name=USP9YP20;ID=HG003_chrY_T0001870;Name=USP9YP20
HG003_chrY	CAT	exon	24783595	24783726	.	+	.	source_transcript=ENST00000419224.1;source_transcript_name=USP9YP20-201;source_gene=ENSG00000230854.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230854.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000419224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419224.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP20;transcript_id=HG003_chrY_T0001870;gene_id=HG003_chrY_G0000679;Parent=HG003_chrY_T0001870;transcript_name=HG003_chrY_T0001870;gene_name=USP9YP20;ID=exon:HG003_chrY_T0001870:0;Name=USP9YP20;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24783727	24788871	.	+	.	source_transcript=ENST00000419224.1;source_transcript_name=USP9YP20-201;source_gene=ENSG00000230854.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230854.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000419224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419224.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP20;transcript_id=HG003_chrY_T0001870;gene_id=HG003_chrY_G0000679;Parent=HG003_chrY_T0001870;transcript_name=HG003_chrY_T0001870;gene_name=USP9YP20;ID=intron:HG003_chrY_T0001870:0;Name=USP9YP20;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24788872	24789009	.	+	.	source_transcript=ENST00000419224.1;source_transcript_name=USP9YP20-201;source_gene=ENSG00000230854.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230854.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000419224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419224.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP20;transcript_id=HG003_chrY_T0001870;gene_id=HG003_chrY_G0000679;Parent=HG003_chrY_T0001870;transcript_name=HG003_chrY_T0001870;gene_name=USP9YP20;ID=exon:HG003_chrY_T0001870:1;Name=USP9YP20;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24789010	24789152	.	+	.	source_transcript=ENST00000419224.1;source_transcript_name=USP9YP20-201;source_gene=ENSG00000230854.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230854.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000419224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419224.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP20;transcript_id=HG003_chrY_T0001870;gene_id=HG003_chrY_G0000679;Parent=HG003_chrY_T0001870;transcript_name=HG003_chrY_T0001870;gene_name=USP9YP20;ID=intron:HG003_chrY_T0001870:1;Name=USP9YP20;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24789153	24789189	.	+	.	source_transcript=ENST00000419224.1;source_transcript_name=USP9YP20-201;source_gene=ENSG00000230854.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230854.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000419224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419224.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP20;transcript_id=HG003_chrY_T0001870;gene_id=HG003_chrY_G0000679;Parent=HG003_chrY_T0001870;transcript_name=HG003_chrY_T0001870;gene_name=USP9YP20;ID=exon:HG003_chrY_T0001870:2;Name=USP9YP20;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24789190	24789403	.	+	.	source_transcript=ENST00000419224.1;source_transcript_name=USP9YP20-201;source_gene=ENSG00000230854.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230854.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000419224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419224.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP20;transcript_id=HG003_chrY_T0001870;gene_id=HG003_chrY_G0000679;Parent=HG003_chrY_T0001870;transcript_name=HG003_chrY_T0001870;gene_name=USP9YP20;ID=intron:HG003_chrY_T0001870:2;Name=USP9YP20;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24789404	24789561	.	+	.	source_transcript=ENST00000419224.1;source_transcript_name=USP9YP20-201;source_gene=ENSG00000230854.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230854.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000419224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419224.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP20;transcript_id=HG003_chrY_T0001870;gene_id=HG003_chrY_G0000679;Parent=HG003_chrY_T0001870;transcript_name=HG003_chrY_T0001870;gene_name=USP9YP20;ID=exon:HG003_chrY_T0001870:3;Name=USP9YP20;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24789562	24789943	.	+	.	source_transcript=ENST00000419224.1;source_transcript_name=USP9YP20-201;source_gene=ENSG00000230854.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230854.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000419224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419224.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP20;transcript_id=HG003_chrY_T0001870;gene_id=HG003_chrY_G0000679;Parent=HG003_chrY_T0001870;transcript_name=HG003_chrY_T0001870;gene_name=USP9YP20;ID=intron:HG003_chrY_T0001870:3;Name=USP9YP20;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24789944	24790036	.	+	.	source_transcript=ENST00000419224.1;source_transcript_name=USP9YP20-201;source_gene=ENSG00000230854.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230854.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000419224.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000419224.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP20;transcript_id=HG003_chrY_T0001870;gene_id=HG003_chrY_G0000679;Parent=HG003_chrY_T0001870;transcript_name=HG003_chrY_T0001870;gene_name=USP9YP20;ID=exon:HG003_chrY_T0001870:4;Name=USP9YP20;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24789189	24789352	.	+	.	source_gene_common_name=RNU1-40P;source_gene=ENSG00000252625.1;gene_id=HG003_chrY_G0000680;gene_biotype=snRNA;gene_name=RNU1-40P;gene_sources=liftoff;ID=HG003_chrY_G0000680;Name=RNU1-40P
HG003_chrY	CAT	transcript	24789189	24789352	1000	+	.	source_transcript=ENST00000516816.1;source_transcript_name=RNU1-40P-201;source_gene=ENSG00000252625.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252625.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516816.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-40P;transcript_id=HG003_chrY_T0001871;gene_id=HG003_chrY_G0000680;Parent=HG003_chrY_G0000680;transcript_name=HG003_chrY_T0001871;gene_name=RNU1-40P;ID=HG003_chrY_T0001871;Name=RNU1-40P
HG003_chrY	CAT	exon	24789189	24789352	.	+	.	source_transcript=ENST00000516816.1;source_transcript_name=RNU1-40P-201;source_gene=ENSG00000252625.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252625.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516816.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516816.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-40P;transcript_id=HG003_chrY_T0001871;gene_id=HG003_chrY_G0000680;Parent=HG003_chrY_T0001871;transcript_name=HG003_chrY_T0001871;gene_name=RNU1-40P;ID=exon:HG003_chrY_T0001871:0;Name=RNU1-40P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24794043	24796091	.	-	.	source_gene_common_name=USP9YP21;source_gene=ENSG00000227635.1;gene_id=HG003_chrY_G0000681;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP21;gene_sources=liftoff;ID=HG003_chrY_G0000681;Name=USP9YP21
HG003_chrY	CAT	transcript	24794043	24796091	1000	-	.	source_transcript=ENST00000420603.1;source_transcript_name=USP9YP21-201;source_gene=ENSG00000227635.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227635.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420603.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420603.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP21;transcript_id=HG003_chrY_T0001872;gene_id=HG003_chrY_G0000681;Parent=HG003_chrY_G0000681;transcript_name=HG003_chrY_T0001872;gene_name=USP9YP21;ID=HG003_chrY_T0001872;Name=USP9YP21
HG003_chrY	CAT	exon	24794043	24794225	.	-	.	source_transcript=ENST00000420603.1;source_transcript_name=USP9YP21-201;source_gene=ENSG00000227635.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227635.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420603.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420603.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP21;transcript_id=HG003_chrY_T0001872;gene_id=HG003_chrY_G0000681;Parent=HG003_chrY_T0001872;transcript_name=HG003_chrY_T0001872;gene_name=USP9YP21;ID=exon:HG003_chrY_T0001872:0;Name=USP9YP21;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24794226	24795842	.	-	.	source_transcript=ENST00000420603.1;source_transcript_name=USP9YP21-201;source_gene=ENSG00000227635.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227635.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420603.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420603.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP21;transcript_id=HG003_chrY_T0001872;gene_id=HG003_chrY_G0000681;Parent=HG003_chrY_T0001872;transcript_name=HG003_chrY_T0001872;gene_name=USP9YP21;ID=intron:HG003_chrY_T0001872:0;Name=USP9YP21;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24795843	24796091	.	-	.	source_transcript=ENST00000420603.1;source_transcript_name=USP9YP21-201;source_gene=ENSG00000227635.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227635.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000420603.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420603.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP21;transcript_id=HG003_chrY_T0001872;gene_id=HG003_chrY_G0000681;Parent=HG003_chrY_T0001872;transcript_name=HG003_chrY_T0001872;gene_name=USP9YP21;ID=exon:HG003_chrY_T0001872:1;Name=USP9YP21;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24803478	24814362	.	+	.	source_gene_common_name=XKRYP6;source_gene=ENSG00000237546.1;gene_id=HG003_chrY_G0000682;gene_biotype=unprocessed_pseudogene;gene_name=XKRYP6;gene_sources=liftoff;ID=HG003_chrY_G0000682;Name=XKRYP6
HG003_chrY	CAT	transcript	24803478	24814362	1000	+	.	source_transcript=ENST00000440468.1;source_transcript_name=XKRYP6-201;source_gene=ENSG00000237546.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237546.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440468.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP6;transcript_id=HG003_chrY_T0001873;gene_id=HG003_chrY_G0000682;Parent=HG003_chrY_G0000682;transcript_name=HG003_chrY_T0001873;gene_name=XKRYP6;ID=HG003_chrY_T0001873;Name=XKRYP6
HG003_chrY	CAT	exon	24803478	24803813	.	+	.	source_transcript=ENST00000440468.1;source_transcript_name=XKRYP6-201;source_gene=ENSG00000237546.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237546.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440468.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP6;transcript_id=HG003_chrY_T0001873;gene_id=HG003_chrY_G0000682;Parent=HG003_chrY_T0001873;transcript_name=HG003_chrY_T0001873;gene_name=XKRYP6;ID=exon:HG003_chrY_T0001873:0;Name=XKRYP6;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24803814	24813582	.	+	.	source_transcript=ENST00000440468.1;source_transcript_name=XKRYP6-201;source_gene=ENSG00000237546.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237546.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440468.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP6;transcript_id=HG003_chrY_T0001873;gene_id=HG003_chrY_G0000682;Parent=HG003_chrY_T0001873;transcript_name=HG003_chrY_T0001873;gene_name=XKRYP6;ID=intron:HG003_chrY_T0001873:0;Name=XKRYP6;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24813583	24814362	.	+	.	source_transcript=ENST00000440468.1;source_transcript_name=XKRYP6-201;source_gene=ENSG00000237546.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237546.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440468.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440468.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP6;transcript_id=HG003_chrY_T0001873;gene_id=HG003_chrY_G0000682;Parent=HG003_chrY_T0001873;transcript_name=HG003_chrY_T0001873;gene_name=XKRYP6;ID=exon:HG003_chrY_T0001873:1;Name=XKRYP6;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24851451	24851782	.	-	.	source_gene_common_name=ELOCP11;source_gene=ENSG00000227867.1;gene_id=HG003_chrY_G0000683;gene_biotype=processed_pseudogene;gene_name=ELOCP11;gene_sources=liftoff;ID=HG003_chrY_G0000683;Name=ELOCP11
HG003_chrY	CAT	transcript	24851451	24851782	1000	-	.	source_transcript=ENST00000436690.1;source_transcript_name=ELOCP11-201;source_gene=ENSG00000227867.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227867.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000436690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436690.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP11;transcript_id=HG003_chrY_T0001874;gene_id=HG003_chrY_G0000683;Parent=HG003_chrY_G0000683;transcript_name=HG003_chrY_T0001874;gene_name=ELOCP11;ID=HG003_chrY_T0001874;Name=ELOCP11
HG003_chrY	CAT	exon	24851451	24851782	.	-	.	source_transcript=ENST00000436690.1;source_transcript_name=ELOCP11-201;source_gene=ENSG00000227867.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227867.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000436690.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436690.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP11;transcript_id=HG003_chrY_T0001874;gene_id=HG003_chrY_G0000683;Parent=HG003_chrY_T0001874;transcript_name=HG003_chrY_T0001874;gene_name=ELOCP11;ID=exon:HG003_chrY_T0001874:0;Name=ELOCP11;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24854894	24855907	.	-	.	source_gene_common_name=CDY23P;source_gene=ENSG00000231716.1;gene_id=HG003_chrY_G0000684;gene_biotype=unprocessed_pseudogene;gene_name=CDY23P;gene_sources=liftoff;ID=HG003_chrY_G0000684;Name=CDY23P
HG003_chrY	CAT	transcript	24854894	24855907	1000	-	.	source_transcript=ENST00000451661.1;source_transcript_name=CDY23P-201;source_gene=ENSG00000231716.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231716.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000451661.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451661.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY23P;transcript_id=HG003_chrY_T0001875;gene_id=HG003_chrY_G0000684;Parent=HG003_chrY_G0000684;transcript_name=HG003_chrY_T0001875;gene_name=CDY23P;ID=HG003_chrY_T0001875;Name=CDY23P
HG003_chrY	CAT	exon	24854894	24855907	.	-	.	source_transcript=ENST00000451661.1;source_transcript_name=CDY23P-201;source_gene=ENSG00000231716.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231716.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000451661.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451661.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY23P;transcript_id=HG003_chrY_T0001875;gene_id=HG003_chrY_G0000684;Parent=HG003_chrY_T0001875;transcript_name=HG003_chrY_T0001875;gene_name=CDY23P;ID=exon:HG003_chrY_T0001875:0;Name=CDY23P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24862466	24869068	.	+	.	source_gene_common_name=USP9YP26;source_gene=ENSG00000234744.1;gene_id=HG003_chrY_G0000685;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP26;gene_sources=liftoff;ID=HG003_chrY_G0000685;Name=USP9YP26
HG003_chrY	CAT	transcript	24862466	24869068	1000	+	.	source_transcript=ENST00000421008.1;source_transcript_name=USP9YP26-201;source_gene=ENSG00000234744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421008.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP26;transcript_id=HG003_chrY_T0001876;gene_id=HG003_chrY_G0000685;Parent=HG003_chrY_G0000685;transcript_name=HG003_chrY_T0001876;gene_name=USP9YP26;ID=HG003_chrY_T0001876;Name=USP9YP26
HG003_chrY	CAT	exon	24862466	24862688	.	+	.	source_transcript=ENST00000421008.1;source_transcript_name=USP9YP26-201;source_gene=ENSG00000234744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP26;transcript_id=HG003_chrY_T0001876;gene_id=HG003_chrY_G0000685;Parent=HG003_chrY_T0001876;transcript_name=HG003_chrY_T0001876;gene_name=USP9YP26;ID=exon:HG003_chrY_T0001876:0;Name=USP9YP26;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24862689	24864486	.	+	.	source_transcript=ENST00000421008.1;source_transcript_name=USP9YP26-201;source_gene=ENSG00000234744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP26;transcript_id=HG003_chrY_T0001876;gene_id=HG003_chrY_G0000685;Parent=HG003_chrY_T0001876;transcript_name=HG003_chrY_T0001876;gene_name=USP9YP26;ID=intron:HG003_chrY_T0001876:0;Name=USP9YP26;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24864487	24864605	.	+	.	source_transcript=ENST00000421008.1;source_transcript_name=USP9YP26-201;source_gene=ENSG00000234744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP26;transcript_id=HG003_chrY_T0001876;gene_id=HG003_chrY_G0000685;Parent=HG003_chrY_T0001876;transcript_name=HG003_chrY_T0001876;gene_name=USP9YP26;ID=exon:HG003_chrY_T0001876:1;Name=USP9YP26;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24864606	24866391	.	+	.	source_transcript=ENST00000421008.1;source_transcript_name=USP9YP26-201;source_gene=ENSG00000234744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP26;transcript_id=HG003_chrY_T0001876;gene_id=HG003_chrY_G0000685;Parent=HG003_chrY_T0001876;transcript_name=HG003_chrY_T0001876;gene_name=USP9YP26;ID=intron:HG003_chrY_T0001876:1;Name=USP9YP26;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24866392	24866581	.	+	.	source_transcript=ENST00000421008.1;source_transcript_name=USP9YP26-201;source_gene=ENSG00000234744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP26;transcript_id=HG003_chrY_T0001876;gene_id=HG003_chrY_G0000685;Parent=HG003_chrY_T0001876;transcript_name=HG003_chrY_T0001876;gene_name=USP9YP26;ID=exon:HG003_chrY_T0001876:2;Name=USP9YP26;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24866582	24868939	.	+	.	source_transcript=ENST00000421008.1;source_transcript_name=USP9YP26-201;source_gene=ENSG00000234744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP26;transcript_id=HG003_chrY_T0001876;gene_id=HG003_chrY_G0000685;Parent=HG003_chrY_T0001876;transcript_name=HG003_chrY_T0001876;gene_name=USP9YP26;ID=intron:HG003_chrY_T0001876:2;Name=USP9YP26;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24868940	24869068	.	+	.	source_transcript=ENST00000421008.1;source_transcript_name=USP9YP26-201;source_gene=ENSG00000234744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000234744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421008.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421008.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP26;transcript_id=HG003_chrY_T0001876;gene_id=HG003_chrY_G0000685;Parent=HG003_chrY_T0001876;transcript_name=HG003_chrY_T0001876;gene_name=USP9YP26;ID=exon:HG003_chrY_T0001876:3;Name=USP9YP26;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24871647	24872449	.	+	.	source_gene_common_name=HSFY8P;source_gene=ENSG00000233156.1;gene_id=HG003_chrY_G0000686;gene_biotype=unprocessed_pseudogene;gene_name=HSFY8P;gene_sources=liftoff;ID=HG003_chrY_G0000686;Name=HSFY8P
HG003_chrY	CAT	transcript	24871647	24872449	1000	+	.	source_transcript=ENST00000437934.1;source_transcript_name=HSFY8P-201;source_gene=ENSG00000233156.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233156.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437934.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437934.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY8P;transcript_id=HG003_chrY_T0001877;gene_id=HG003_chrY_G0000686;Parent=HG003_chrY_G0000686;transcript_name=HG003_chrY_T0001877;gene_name=HSFY8P;ID=HG003_chrY_T0001877;Name=HSFY8P
HG003_chrY	CAT	exon	24871647	24871805	.	+	.	source_transcript=ENST00000437934.1;source_transcript_name=HSFY8P-201;source_gene=ENSG00000233156.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233156.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437934.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437934.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY8P;transcript_id=HG003_chrY_T0001877;gene_id=HG003_chrY_G0000686;Parent=HG003_chrY_T0001877;transcript_name=HG003_chrY_T0001877;gene_name=HSFY8P;ID=exon:HG003_chrY_T0001877:0;Name=HSFY8P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24871806	24872290	.	+	.	source_transcript=ENST00000437934.1;source_transcript_name=HSFY8P-201;source_gene=ENSG00000233156.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233156.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437934.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437934.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY8P;transcript_id=HG003_chrY_T0001877;gene_id=HG003_chrY_G0000686;Parent=HG003_chrY_T0001877;transcript_name=HG003_chrY_T0001877;gene_name=HSFY8P;ID=intron:HG003_chrY_T0001877:0;Name=HSFY8P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24872291	24872449	.	+	.	source_transcript=ENST00000437934.1;source_transcript_name=HSFY8P-201;source_gene=ENSG00000233156.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000233156.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437934.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437934.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY8P;transcript_id=HG003_chrY_T0001877;gene_id=HG003_chrY_G0000686;Parent=HG003_chrY_T0001877;transcript_name=HG003_chrY_T0001877;gene_name=HSFY8P;ID=exon:HG003_chrY_T0001877:1;Name=HSFY8P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24889501	24892667	.	-	.	source_gene_common_name=ENSG00000295422;source_gene=ENSG00000295422.1;alternative_source_transcripts=ENST00000729927.1;gene_id=HG003_chrY_G0000687;gene_biotype=lncRNA;gene_name=ENSG00000295422;gene_sources=liftoff;ID=HG003_chrY_G0000687;Name=ENSG00000295422
HG003_chrY	CAT	transcript	24889501	24892667	1000	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;alternative_source_transcripts=ENST00000729927.1;transcript_id=HG003_chrY_T0001878;gene_id=HG003_chrY_G0000687;Parent=HG003_chrY_G0000687;transcript_name=HG003_chrY_T0001878;gene_name=ENSG00000295422;ID=HG003_chrY_T0001878;Name=ENSG00000295422
HG003_chrY	CAT	exon	24889501	24890843	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;alternative_source_transcripts=ENST00000729927.1;transcript_id=HG003_chrY_T0001878;gene_id=HG003_chrY_G0000687;Parent=HG003_chrY_T0001878;transcript_name=HG003_chrY_T0001878;gene_name=ENSG00000295422;ID=exon:HG003_chrY_T0001878:0;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24890844	24892378	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;alternative_source_transcripts=ENST00000729927.1;transcript_id=HG003_chrY_T0001878;gene_id=HG003_chrY_G0000687;Parent=HG003_chrY_T0001878;transcript_name=HG003_chrY_T0001878;gene_name=ENSG00000295422;ID=intron:HG003_chrY_T0001878:0;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24892379	24892439	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;alternative_source_transcripts=ENST00000729927.1;transcript_id=HG003_chrY_T0001878;gene_id=HG003_chrY_G0000687;Parent=HG003_chrY_T0001878;transcript_name=HG003_chrY_T0001878;gene_name=ENSG00000295422;ID=exon:HG003_chrY_T0001878:1;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24892440	24892556	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;alternative_source_transcripts=ENST00000729927.1;transcript_id=HG003_chrY_T0001878;gene_id=HG003_chrY_G0000687;Parent=HG003_chrY_T0001878;transcript_name=HG003_chrY_T0001878;gene_name=ENSG00000295422;ID=intron:HG003_chrY_T0001878:1;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24892557	24892667	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;alternative_source_transcripts=ENST00000729927.1;transcript_id=HG003_chrY_T0001878;gene_id=HG003_chrY_G0000687;Parent=HG003_chrY_T0001878;transcript_name=HG003_chrY_T0001878;gene_name=ENSG00000295422;ID=exon:HG003_chrY_T0001878:2;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24915992	24948701	.	-	.	source_gene_common_name=OFD1P15Y;source_gene=ENSG00000234888.1;gene_id=HG003_chrY_G0000688;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=OFD1P15Y;gene_sources=liftoff;ID=HG003_chrY_G0000688;Name=OFD1P15Y
HG003_chrY	CAT	transcript	24915992	24948701	1000	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_G0000688;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=HG003_chrY_T0001879;Name=OFD1P15Y
HG003_chrY	CAT	exon	24915992	24916062	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=exon:HG003_chrY_T0001879:0;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24916063	24917243	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=intron:HG003_chrY_T0001879:0;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24917244	24917407	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=exon:HG003_chrY_T0001879:1;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24917408	24924045	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=intron:HG003_chrY_T0001879:1;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24924046	24924142	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=exon:HG003_chrY_T0001879:2;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24924143	24943495	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=intron:HG003_chrY_T0001879:2;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24943496	24943592	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=exon:HG003_chrY_T0001879:3;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24943593	24943961	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=intron:HG003_chrY_T0001879:3;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24943962	24944581	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=exon:HG003_chrY_T0001879:4;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24944582	24946298	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=intron:HG003_chrY_T0001879:4;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24946299	24946411	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=exon:HG003_chrY_T0001879:5;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24946412	24946947	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=intron:HG003_chrY_T0001879:5;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24946948	24947072	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=exon:HG003_chrY_T0001879:6;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24947073	24948596	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=intron:HG003_chrY_T0001879:6;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24948597	24948701	.	-	.	source_transcript=ENST00000411536.1;source_transcript_name=OFD1P15Y-201;source_gene=ENSG00000234888.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000234888.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000411536.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000411536.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P15Y;transcript_id=HG003_chrY_T0001879;gene_id=HG003_chrY_G0000688;Parent=HG003_chrY_T0001879;transcript_name=HG003_chrY_T0001879;gene_name=OFD1P15Y;ID=exon:HG003_chrY_T0001879:7;Name=OFD1P15Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24970210	24975664	.	+	.	source_gene_common_name=ENSG00000299625;source_gene=ENSG00000299625.1;gene_id=HG003_chrY_G0000689;gene_biotype=lncRNA;gene_name=ENSG00000299625;gene_sources=liftoff;ID=HG003_chrY_G0000689;Name=ENSG00000299625
HG003_chrY	CAT	transcript	24970210	24975658	1000	+	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001880;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_G0000689;transcript_name=HG003_chrY_T0001880;gene_name=ENSG00000299625;ID=HG003_chrY_T0001880;Name=ENSG00000299625
HG003_chrY	CAT	exon	24970210	24970549	.	+	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001880;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_T0001880;transcript_name=HG003_chrY_T0001880;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001880:0;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24970550	24974467	.	+	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001880;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_T0001880;transcript_name=HG003_chrY_T0001880;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0001880:0;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24974468	24974594	.	+	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001880;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_T0001880;transcript_name=HG003_chrY_T0001880;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001880:1;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24974595	24974958	.	+	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001880;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_T0001880;transcript_name=HG003_chrY_T0001880;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0001880:1;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24974959	24975658	.	+	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001880;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_T0001880;transcript_name=HG003_chrY_T0001880;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001880:2;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24970211	24975664	1000	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001881;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_G0000689;transcript_name=HG003_chrY_T0001881;gene_name=ENSG00000299625;ID=HG003_chrY_T0001881;Name=ENSG00000299625
HG003_chrY	CAT	exon	24970211	24970549	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001881;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_T0001881;transcript_name=HG003_chrY_T0001881;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001881:0;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24970550	24972465	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001881;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_T0001881;transcript_name=HG003_chrY_T0001881;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0001881:0;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24972466	24972599	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001881;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_T0001881;transcript_name=HG003_chrY_T0001881;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001881:1;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24972600	24974467	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001881;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_T0001881;transcript_name=HG003_chrY_T0001881;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0001881:1;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24974468	24974594	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001881;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_T0001881;transcript_name=HG003_chrY_T0001881;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001881:2;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24974595	24974958	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001881;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_T0001881;transcript_name=HG003_chrY_T0001881;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0001881:2;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24974959	24975664	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0001881;gene_id=HG003_chrY_G0000689;Parent=HG003_chrY_T0001881;transcript_name=HG003_chrY_T0001881;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0001881:3;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24979438	24981014	.	-	.	source_gene_common_name=ENSG00000236647;source_gene=ENSG00000236647.1;gene_id=HG003_chrY_G0000690;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000236647;gene_sources=liftoff;ID=HG003_chrY_G0000690;Name=ENSG00000236647
HG003_chrY	CAT	transcript	24979438	24981014	1000	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;transcript_id=HG003_chrY_T0001882;gene_id=HG003_chrY_G0000690;Parent=HG003_chrY_G0000690;transcript_name=HG003_chrY_T0001882;gene_name=ENSG00000236647;ID=HG003_chrY_T0001882;Name=ENSG00000236647
HG003_chrY	CAT	exon	24979438	24979513	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;transcript_id=HG003_chrY_T0001882;gene_id=HG003_chrY_G0000690;Parent=HG003_chrY_T0001882;transcript_name=HG003_chrY_T0001882;gene_name=ENSG00000236647;ID=exon:HG003_chrY_T0001882:0;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24979514	24979630	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;transcript_id=HG003_chrY_T0001882;gene_id=HG003_chrY_G0000690;Parent=HG003_chrY_T0001882;transcript_name=HG003_chrY_T0001882;gene_name=ENSG00000236647;ID=intron:HG003_chrY_T0001882:0;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24979631	24979770	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;transcript_id=HG003_chrY_T0001882;gene_id=HG003_chrY_G0000690;Parent=HG003_chrY_T0001882;transcript_name=HG003_chrY_T0001882;gene_name=ENSG00000236647;ID=exon:HG003_chrY_T0001882:1;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24979771	24979865	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;transcript_id=HG003_chrY_T0001882;gene_id=HG003_chrY_G0000690;Parent=HG003_chrY_T0001882;transcript_name=HG003_chrY_T0001882;gene_name=ENSG00000236647;ID=intron:HG003_chrY_T0001882:1;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24979866	24979940	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;transcript_id=HG003_chrY_T0001882;gene_id=HG003_chrY_G0000690;Parent=HG003_chrY_T0001882;transcript_name=HG003_chrY_T0001882;gene_name=ENSG00000236647;ID=exon:HG003_chrY_T0001882:2;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24979941	24980169	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;transcript_id=HG003_chrY_T0001882;gene_id=HG003_chrY_G0000690;Parent=HG003_chrY_T0001882;transcript_name=HG003_chrY_T0001882;gene_name=ENSG00000236647;ID=intron:HG003_chrY_T0001882:2;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24980170	24980208	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;transcript_id=HG003_chrY_T0001882;gene_id=HG003_chrY_G0000690;Parent=HG003_chrY_T0001882;transcript_name=HG003_chrY_T0001882;gene_name=ENSG00000236647;ID=exon:HG003_chrY_T0001882:3;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24980209	24980672	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;transcript_id=HG003_chrY_T0001882;gene_id=HG003_chrY_G0000690;Parent=HG003_chrY_T0001882;transcript_name=HG003_chrY_T0001882;gene_name=ENSG00000236647;ID=intron:HG003_chrY_T0001882:3;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24980673	24981014	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;transcript_id=HG003_chrY_T0001882;gene_id=HG003_chrY_G0000690;Parent=HG003_chrY_T0001882;transcript_name=HG003_chrY_T0001882;gene_name=ENSG00000236647;ID=exon:HG003_chrY_T0001882:4;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24981879	24991725	.	+	.	source_gene_common_name=ENSG00000293249;source_gene=ENSG00000293249.2;gene_id=HG003_chrY_G0000691;gene_biotype=lncRNA;gene_name=ENSG00000293249;gene_sources=liftoff;ID=HG003_chrY_G0000691;Name=ENSG00000293249
HG003_chrY	CAT	transcript	24981879	24991725	1000	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_G0000691;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=HG003_chrY_T0001883;Name=ENSG00000293249
HG003_chrY	CAT	exon	24981879	24982028	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001883:0;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24982029	24982782	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001883:0;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24982783	24982862	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001883:1;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24982863	24983876	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001883:1;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24983877	24983989	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001883:2;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24983990	24984442	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001883:2;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24984443	24984546	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001883:3;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24984547	24987254	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001883:3;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24987255	24987432	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001883:4;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24987433	24989367	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001883:4;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24989368	24989520	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001883:5;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24989521	24991527	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001883:5;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24991528	24991725	.	+	.	source_transcript=ENST00000458444.2;source_transcript_name=ENST00000458444;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000458444.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000458444.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001883;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001883;transcript_name=HG003_chrY_T0001883;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001883:6;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24981898	24990358	1000	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_G0000691;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=HG003_chrY_T0001884;Name=ENSG00000293249
HG003_chrY	CAT	exon	24981898	24982028	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001884:0;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24982029	24982782	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001884:0;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24982783	24982862	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001884:1;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24982863	24983876	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001884:1;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24983877	24983989	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001884:2;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24983990	24984442	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001884:2;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24984443	24984546	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001884:3;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24984547	24987254	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001884:3;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24987255	24987432	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001884:4;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24987433	24989367	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001884:4;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24989368	24989520	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001884:5;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24989521	24990098	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001884:5;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24990099	24990358	.	+	.	source_transcript=ENST00000812118.1;source_transcript_name=ENST00000812118;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812118.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812118.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001884;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001884;transcript_name=HG003_chrY_T0001884;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001884:6;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	24981907	24990358	1000	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_G0000691;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=HG003_chrY_T0001885;Name=ENSG00000293249
HG003_chrY	CAT	exon	24981907	24982028	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001885:0;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24982029	24982679	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001885:0;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24982680	24982862	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001885:1;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24982863	24983876	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001885:1;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24983877	24983989	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001885:2;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24983990	24984442	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001885:2;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24984443	24984546	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001885:3;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24984547	24987254	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001885:3;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24987255	24987432	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001885:4;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24987433	24989367	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001885:4;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24989368	24989520	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001885:5;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24989521	24990098	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=intron:HG003_chrY_T0001885:5;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24990099	24990358	.	+	.	source_transcript=ENST00000812119.1;source_transcript_name=ENST00000812119;source_gene=ENSG00000293249.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293249.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812119.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812119.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293249;transcript_id=HG003_chrY_T0001885;gene_id=HG003_chrY_G0000691;Parent=HG003_chrY_T0001885;transcript_name=HG003_chrY_T0001885;gene_name=ENSG00000293249;ID=exon:HG003_chrY_T0001885:6;Name=ENSG00000293249;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	24983881	24993515	.	+	.	source_gene_common_name=RBMY2CP;source_gene=ENSG00000215540.11;gene_id=HG003_chrY_G0000692;gene_biotype=transcribed_processed_pseudogene;gene_name=RBMY2CP;gene_sources=liftoff;ID=HG003_chrY_G0000692;Name=RBMY2CP
HG003_chrY	CAT	transcript	24983881	24993515	1000	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_G0000692;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=HG003_chrY_T0001886;Name=RBMY2CP
HG003_chrY	CAT	exon	24983881	24983989	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=exon:HG003_chrY_T0001886:0;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24983990	24984442	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=intron:HG003_chrY_T0001886:0;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24984443	24984546	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=exon:HG003_chrY_T0001886:1;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24984547	24987254	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=intron:HG003_chrY_T0001886:1;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24987255	24987432	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=exon:HG003_chrY_T0001886:2;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24987433	24989367	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=intron:HG003_chrY_T0001886:2;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24989368	24989520	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=exon:HG003_chrY_T0001886:3;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24989521	24991527	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=intron:HG003_chrY_T0001886:3;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24991528	24991642	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=exon:HG003_chrY_T0001886:4;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24991643	24992511	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=intron:HG003_chrY_T0001886:4;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24992512	24992622	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=exon:HG003_chrY_T0001886:5;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24992623	24992704	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=intron:HG003_chrY_T0001886:5;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24992705	24992792	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=exon:HG003_chrY_T0001886:6;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	24992793	24993216	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=intron:HG003_chrY_T0001886:6;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	24993217	24993515	.	+	.	source_transcript=ENST00000448575.5;source_transcript_name=RBMY2CP-201;source_gene=ENSG00000215540.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215540.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448575.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448575.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2CP;transcript_id=HG003_chrY_T0001886;gene_id=HG003_chrY_G0000692;Parent=HG003_chrY_T0001886;transcript_name=HG003_chrY_T0001886;gene_name=RBMY2CP;ID=exon:HG003_chrY_T0001886:7;Name=RBMY2CP;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25005453	25007501	.	-	.	source_gene_common_name=ENSG00000230073;source_gene=ENSG00000230073.1;gene_id=HG003_chrY_G0000693;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000230073;gene_sources=liftoff;ID=HG003_chrY_G0000693;Name=ENSG00000230073
HG003_chrY	CAT	transcript	25005453	25007501	1000	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0001887;gene_id=HG003_chrY_G0000693;Parent=HG003_chrY_G0000693;transcript_name=HG003_chrY_T0001887;gene_name=ENSG00000230073;ID=HG003_chrY_T0001887;Name=ENSG00000230073
HG003_chrY	CAT	exon	25005453	25005596	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0001887;gene_id=HG003_chrY_G0000693;Parent=HG003_chrY_T0001887;transcript_name=HG003_chrY_T0001887;gene_name=ENSG00000230073;ID=exon:HG003_chrY_T0001887:0;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25005597	25005688	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0001887;gene_id=HG003_chrY_G0000693;Parent=HG003_chrY_T0001887;transcript_name=HG003_chrY_T0001887;gene_name=ENSG00000230073;ID=intron:HG003_chrY_T0001887:0;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25005689	25005812	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0001887;gene_id=HG003_chrY_G0000693;Parent=HG003_chrY_T0001887;transcript_name=HG003_chrY_T0001887;gene_name=ENSG00000230073;ID=exon:HG003_chrY_T0001887:1;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25005813	25006012	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0001887;gene_id=HG003_chrY_G0000693;Parent=HG003_chrY_T0001887;transcript_name=HG003_chrY_T0001887;gene_name=ENSG00000230073;ID=intron:HG003_chrY_T0001887:1;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25006013	25006069	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0001887;gene_id=HG003_chrY_G0000693;Parent=HG003_chrY_T0001887;transcript_name=HG003_chrY_T0001887;gene_name=ENSG00000230073;ID=exon:HG003_chrY_T0001887:2;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25006070	25007099	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0001887;gene_id=HG003_chrY_G0000693;Parent=HG003_chrY_T0001887;transcript_name=HG003_chrY_T0001887;gene_name=ENSG00000230073;ID=intron:HG003_chrY_T0001887:2;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25007100	25007501	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0001887;gene_id=HG003_chrY_G0000693;Parent=HG003_chrY_T0001887;transcript_name=HG003_chrY_T0001887;gene_name=ENSG00000230073;ID=exon:HG003_chrY_T0001887:3;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25058532	25068347	.	-	.	source_gene_common_name=REREP1Y;source_gene=ENSG00000225189.1;gene_id=HG003_chrY_G0000694;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=REREP1Y;gene_sources=liftoff;ID=HG003_chrY_G0000694;Name=REREP1Y
HG003_chrY	CAT	transcript	25058532	25068347	1000	-	.	source_transcript=ENST00000422655.1;source_transcript_name=REREP1Y-201;source_gene=ENSG00000225189.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225189.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000422655.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422655.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;transcript_id=HG003_chrY_T0001888;gene_id=HG003_chrY_G0000694;Parent=HG003_chrY_G0000694;transcript_name=HG003_chrY_T0001888;gene_name=REREP1Y;ID=HG003_chrY_T0001888;Name=REREP1Y
HG003_chrY	CAT	exon	25058532	25058658	.	-	.	source_transcript=ENST00000422655.1;source_transcript_name=REREP1Y-201;source_gene=ENSG00000225189.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225189.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000422655.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422655.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;transcript_id=HG003_chrY_T0001888;gene_id=HG003_chrY_G0000694;Parent=HG003_chrY_T0001888;transcript_name=HG003_chrY_T0001888;gene_name=REREP1Y;ID=exon:HG003_chrY_T0001888:0;Name=REREP1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25058659	25068276	.	-	.	source_transcript=ENST00000422655.1;source_transcript_name=REREP1Y-201;source_gene=ENSG00000225189.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225189.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000422655.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422655.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;transcript_id=HG003_chrY_T0001888;gene_id=HG003_chrY_G0000694;Parent=HG003_chrY_T0001888;transcript_name=HG003_chrY_T0001888;gene_name=REREP1Y;ID=intron:HG003_chrY_T0001888:0;Name=REREP1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25068277	25068347	.	-	.	source_transcript=ENST00000422655.1;source_transcript_name=REREP1Y-201;source_gene=ENSG00000225189.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225189.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000422655.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000422655.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP1Y;transcript_id=HG003_chrY_T0001888;gene_id=HG003_chrY_G0000694;Parent=HG003_chrY_T0001888;transcript_name=HG003_chrY_T0001888;gene_name=REREP1Y;ID=exon:HG003_chrY_T0001888:1;Name=REREP1Y;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25094807	25094908	.	-	.	source_gene_common_name=ENSG00000289705;source_gene=ENSG00000289705.1;gene_id=HG003_chrY_G0000695;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000289705;gene_sources=liftoff;ID=HG003_chrY_G0000695;Name=ENSG00000289705
HG003_chrY	CAT	transcript	25094807	25094908	1000	-	.	source_transcript=ENST00000696462.1;source_transcript_name=ENST00000696462;source_gene=ENSG00000289705.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000289705.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000696462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696462.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289705;transcript_id=HG003_chrY_T0001889;gene_id=HG003_chrY_G0000695;Parent=HG003_chrY_G0000695;transcript_name=HG003_chrY_T0001889;gene_name=ENSG00000289705;ID=HG003_chrY_T0001889;Name=ENSG00000289705
HG003_chrY	CAT	exon	25094807	25094908	.	-	.	source_transcript=ENST00000696462.1;source_transcript_name=ENST00000696462;source_gene=ENSG00000289705.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000289705.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000696462.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000696462.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000289705;transcript_id=HG003_chrY_T0001889;gene_id=HG003_chrY_G0000695;Parent=HG003_chrY_T0001889;transcript_name=HG003_chrY_T0001889;gene_name=ENSG00000289705;ID=exon:HG003_chrY_T0001889:0;Name=ENSG00000289705;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25104542	25104764	.	-	.	source_gene_common_name=ENSG00000225876;source_gene=ENSG00000225876.1;alternative_source_transcripts=ENST00000426199.1;gene_id=HG003_chrY_G0000696;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000225876;gene_sources=liftoff;ID=HG003_chrY_G0000696;Name=ENSG00000225876
HG003_chrY	CAT	transcript	25104542	25104764	1000	-	.	source_transcript=ENST00000426199.1;source_transcript_name=ENST00000426199;source_gene=ENSG00000225876.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225876.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426199.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000225876;alternative_source_transcripts=ENST00000426199.1;transcript_id=HG003_chrY_T0001890;gene_id=HG003_chrY_G0000696;Parent=HG003_chrY_G0000696;transcript_name=HG003_chrY_T0001890;gene_name=ENSG00000225876;ID=HG003_chrY_T0001890;Name=ENSG00000225876
HG003_chrY	CAT	exon	25104542	25104764	.	-	.	source_transcript=ENST00000426199.1;source_transcript_name=ENST00000426199;source_gene=ENSG00000225876.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225876.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000225876;alternative_source_transcripts=ENST00000426199.1;transcript_id=HG003_chrY_T0001890;gene_id=HG003_chrY_G0000696;Parent=HG003_chrY_T0001890;transcript_name=HG003_chrY_T0001890;gene_name=ENSG00000225876;ID=exon:HG003_chrY_T0001890:0;Name=ENSG00000225876;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25107575	25107712	.	+	.	source_gene_common_name=SNORA70;source_gene=ENSG00000251796.1;gene_id=HG003_chrY_G0000697;gene_biotype=snoRNA;gene_name=SNORA70;gene_sources=liftoff;ID=HG003_chrY_G0000697;Name=SNORA70
HG003_chrY	CAT	transcript	25107575	25107712	1000	+	.	source_transcript=ENST00000515987.1;source_transcript_name=SNORA70.11-201;source_gene=ENSG00000251796.1;source_gene_biotype=snoRNA;original_gene_id=ENSG00000251796.1;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=ENST00000515987.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000515987.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SNORA70;transcript_id=HG003_chrY_T0001891;gene_id=HG003_chrY_G0000697;Parent=HG003_chrY_G0000697;transcript_name=HG003_chrY_T0001891;gene_name=SNORA70;ID=HG003_chrY_T0001891;Name=SNORA70
HG003_chrY	CAT	exon	25107575	25107712	.	+	.	source_transcript=ENST00000515987.1;source_transcript_name=SNORA70.11-201;source_gene=ENSG00000251796.1;source_gene_biotype=snoRNA;original_gene_id=ENSG00000251796.1;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=ENST00000515987.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000515987.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SNORA70;transcript_id=HG003_chrY_T0001891;gene_id=HG003_chrY_G0000697;Parent=HG003_chrY_T0001891;transcript_name=HG003_chrY_T0001891;gene_name=SNORA70;ID=exon:HG003_chrY_T0001891:0;Name=SNORA70;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25138114	25214607	.	-	.	source_gene_common_name=PPP1R12BP1;source_gene=ENSG00000229238.3;gene_id=HG003_chrY_G0000698;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=PPP1R12BP1;gene_sources=liftoff;ID=HG003_chrY_G0000698;Name=PPP1R12BP1
HG003_chrY	CAT	transcript	25138114	25214607	1000	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_G0000698;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=HG003_chrY_T0001892;Name=PPP1R12BP1
HG003_chrY	CAT	exon	25138114	25138155	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:0;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25138156	25139255	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=intron:HG003_chrY_T0001892:0;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25139256	25139368	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:1;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25139369	25139456	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=intron:HG003_chrY_T0001892:1;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25139457	25139646	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:2;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25139647	25141616	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=intron:HG003_chrY_T0001892:2;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25141617	25141820	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:3;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25141821	25151237	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=intron:HG003_chrY_T0001892:3;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25151238	25151327	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:4;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25151328	25189140	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=intron:HG003_chrY_T0001892:4;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25189141	25189323	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:5;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25189324	25193120	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=intron:HG003_chrY_T0001892:5;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25193121	25193260	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:6;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25193261	25193916	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=intron:HG003_chrY_T0001892:6;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25193917	25193996	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:7;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25193997	25195837	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=intron:HG003_chrY_T0001892:7;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25195838	25195911	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:8;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25195912	25197568	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=intron:HG003_chrY_T0001892:8;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25197569	25197713	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:9;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25197714	25199026	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=intron:HG003_chrY_T0001892:9;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25199027	25199186	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:10;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25199187	25208649	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=intron:HG003_chrY_T0001892:10;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25208650	25208768	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:11;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25208769	25214476	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=intron:HG003_chrY_T0001892:11;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25214477	25214607	.	-	.	source_transcript=ENST00000367272.4;source_transcript_name=PPP1R12BP1-201;source_gene=ENSG00000229238.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000229238.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000367272.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000367272.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP1;transcript_id=HG003_chrY_T0001892;gene_id=HG003_chrY_G0000698;Parent=HG003_chrY_T0001892;transcript_name=HG003_chrY_T0001892;gene_name=PPP1R12BP1;ID=exon:HG003_chrY_T0001892:12;Name=PPP1R12BP1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25221178	25221281	.	+	.	source_gene_common_name=RNU6-1314P;source_gene=ENSG00000252948.1;alternative_source_transcripts=ENST00000517139.1;gene_id=HG003_chrY_G0000699;gene_biotype=snRNA;gene_name=RNU6-1314P;gene_sources=liftoff;ID=HG003_chrY_G0000699;Name=RNU6-1314P
HG003_chrY	CAT	transcript	25221178	25221281	1000	+	.	source_transcript=ENST00000517139.1;source_transcript_name=RNU6-1314P-201;source_gene=ENSG00000252948.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252948.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000517139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000517139.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-1314P;alternative_source_transcripts=ENST00000517139.1;transcript_id=HG003_chrY_T0001893;gene_id=HG003_chrY_G0000699;Parent=HG003_chrY_G0000699;transcript_name=HG003_chrY_T0001893;gene_name=RNU6-1314P;ID=HG003_chrY_T0001893;Name=RNU6-1314P
HG003_chrY	CAT	exon	25221178	25221281	.	+	.	source_transcript=ENST00000517139.1;source_transcript_name=RNU6-1314P-201;source_gene=ENSG00000252948.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252948.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000517139.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000517139.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU6-1314P;alternative_source_transcripts=ENST00000517139.1;transcript_id=HG003_chrY_T0001893;gene_id=HG003_chrY_G0000699;Parent=HG003_chrY_T0001893;transcript_name=HG003_chrY_T0001893;gene_name=RNU6-1314P;ID=exon:HG003_chrY_T0001893:0;Name=RNU6-1314P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25260800	25261419	.	+	.	source_gene_common_name=CYCSP48;source_gene=ENSG00000233843.1;alternative_source_transcripts=ENST00000417124.1;gene_id=HG003_chrY_G0000700;gene_biotype=processed_pseudogene;gene_name=CYCSP48;gene_sources=liftoff;ID=HG003_chrY_G0000700;Name=CYCSP48
HG003_chrY	CAT	transcript	25260800	25261419	1000	+	.	source_transcript=ENST00000417124.1;source_transcript_name=CYCSP48-201;source_gene=ENSG00000233843.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233843.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000417124.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417124.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CYCSP48;alternative_source_transcripts=ENST00000417124.1;transcript_id=HG003_chrY_T0001894;gene_id=HG003_chrY_G0000700;Parent=HG003_chrY_G0000700;transcript_name=HG003_chrY_T0001894;gene_name=CYCSP48;ID=HG003_chrY_T0001894;Name=CYCSP48
HG003_chrY	CAT	exon	25260800	25260850	.	+	.	source_transcript=ENST00000417124.1;source_transcript_name=CYCSP48-201;source_gene=ENSG00000233843.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233843.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000417124.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CYCSP48;alternative_source_transcripts=ENST00000417124.1;transcript_id=HG003_chrY_T0001894;gene_id=HG003_chrY_G0000700;Parent=HG003_chrY_T0001894;transcript_name=HG003_chrY_T0001894;gene_name=CYCSP48;ID=exon:HG003_chrY_T0001894:0;Name=CYCSP48;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25260851	25261147	.	+	.	source_transcript=ENST00000417124.1;source_transcript_name=CYCSP48-201;source_gene=ENSG00000233843.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233843.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000417124.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CYCSP48;alternative_source_transcripts=ENST00000417124.1;transcript_id=HG003_chrY_T0001894;gene_id=HG003_chrY_G0000700;Parent=HG003_chrY_T0001894;transcript_name=HG003_chrY_T0001894;gene_name=CYCSP48;ID=intron:HG003_chrY_T0001894:0;Name=CYCSP48;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25261148	25261419	.	+	.	source_transcript=ENST00000417124.1;source_transcript_name=CYCSP48-201;source_gene=ENSG00000233843.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233843.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000417124.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417124.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CYCSP48;alternative_source_transcripts=ENST00000417124.1;transcript_id=HG003_chrY_T0001894;gene_id=HG003_chrY_G0000700;Parent=HG003_chrY_T0001894;transcript_name=HG003_chrY_T0001894;gene_name=CYCSP48;ID=exon:HG003_chrY_T0001894:1;Name=CYCSP48;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25269347	25368472	.	+	.	source_gene_common_name=ENSG00000294742;source_gene=ENSG00000294742.1;gene_id=HG003_chrY_G0000701;gene_biotype=lncRNA;gene_name=ENSG00000294742;gene_sources=liftoff;ID=HG003_chrY_G0000701;Name=ENSG00000294742
HG003_chrY	CAT	transcript	25269347	25314308	1000	+	.	source_transcript=ENST00000725548.1;source_transcript_name=ENST00000725548;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725548.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725548.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001895;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_G0000701;transcript_name=HG003_chrY_T0001895;gene_name=ENSG00000294742;ID=HG003_chrY_T0001895;Name=ENSG00000294742
HG003_chrY	CAT	exon	25269347	25269439	.	+	.	source_transcript=ENST00000725548.1;source_transcript_name=ENST00000725548;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725548.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725548.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001895;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001895;transcript_name=HG003_chrY_T0001895;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001895:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25269440	25269887	.	+	.	source_transcript=ENST00000725548.1;source_transcript_name=ENST00000725548;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725548.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725548.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001895;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001895;transcript_name=HG003_chrY_T0001895;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001895:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25269888	25270134	.	+	.	source_transcript=ENST00000725548.1;source_transcript_name=ENST00000725548;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725548.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725548.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001895;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001895;transcript_name=HG003_chrY_T0001895;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001895:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25270135	25297151	.	+	.	source_transcript=ENST00000725548.1;source_transcript_name=ENST00000725548;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725548.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725548.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001895;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001895;transcript_name=HG003_chrY_T0001895;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001895:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297152	25297180	.	+	.	source_transcript=ENST00000725548.1;source_transcript_name=ENST00000725548;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725548.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725548.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001895;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001895;transcript_name=HG003_chrY_T0001895;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001895:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297181	25297274	.	+	.	source_transcript=ENST00000725548.1;source_transcript_name=ENST00000725548;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725548.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725548.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001895;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001895;transcript_name=HG003_chrY_T0001895;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001895:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297275	25297347	.	+	.	source_transcript=ENST00000725548.1;source_transcript_name=ENST00000725548;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725548.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725548.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001895;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001895;transcript_name=HG003_chrY_T0001895;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001895:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297348	25314204	.	+	.	source_transcript=ENST00000725548.1;source_transcript_name=ENST00000725548;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725548.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725548.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001895;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001895;transcript_name=HG003_chrY_T0001895;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001895:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25314205	25314308	.	+	.	source_transcript=ENST00000725548.1;source_transcript_name=ENST00000725548;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725548.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725548.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001895;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001895;transcript_name=HG003_chrY_T0001895;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001895:4;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	25269363	25299225	1000	+	.	source_transcript=ENST00000725551.1;source_transcript_name=ENST00000725551;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725551.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725551.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001896;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_G0000701;transcript_name=HG003_chrY_T0001896;gene_name=ENSG00000294742;ID=HG003_chrY_T0001896;Name=ENSG00000294742
HG003_chrY	CAT	exon	25269363	25269439	.	+	.	source_transcript=ENST00000725551.1;source_transcript_name=ENST00000725551;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725551.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725551.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001896;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001896;transcript_name=HG003_chrY_T0001896;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001896:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25269440	25269887	.	+	.	source_transcript=ENST00000725551.1;source_transcript_name=ENST00000725551;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725551.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725551.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001896;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001896;transcript_name=HG003_chrY_T0001896;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001896:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25269888	25270134	.	+	.	source_transcript=ENST00000725551.1;source_transcript_name=ENST00000725551;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725551.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725551.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001896;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001896;transcript_name=HG003_chrY_T0001896;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001896:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25270135	25297151	.	+	.	source_transcript=ENST00000725551.1;source_transcript_name=ENST00000725551;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725551.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725551.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001896;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001896;transcript_name=HG003_chrY_T0001896;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001896:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297152	25297180	.	+	.	source_transcript=ENST00000725551.1;source_transcript_name=ENST00000725551;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725551.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725551.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001896;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001896;transcript_name=HG003_chrY_T0001896;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001896:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297181	25299029	.	+	.	source_transcript=ENST00000725551.1;source_transcript_name=ENST00000725551;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725551.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725551.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001896;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001896;transcript_name=HG003_chrY_T0001896;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001896:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25299030	25299225	.	+	.	source_transcript=ENST00000725551.1;source_transcript_name=ENST00000725551;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725551.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725551.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001896;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001896;transcript_name=HG003_chrY_T0001896;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001896:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	25269368	25299159	1000	+	.	source_transcript=ENST00000725553.1;source_transcript_name=ENST00000725553;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725553.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001897;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_G0000701;transcript_name=HG003_chrY_T0001897;gene_name=ENSG00000294742;ID=HG003_chrY_T0001897;Name=ENSG00000294742
HG003_chrY	CAT	exon	25269368	25269439	.	+	.	source_transcript=ENST00000725553.1;source_transcript_name=ENST00000725553;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725553.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001897;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001897;transcript_name=HG003_chrY_T0001897;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001897:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25269440	25269887	.	+	.	source_transcript=ENST00000725553.1;source_transcript_name=ENST00000725553;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725553.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001897;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001897;transcript_name=HG003_chrY_T0001897;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001897:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25269888	25270134	.	+	.	source_transcript=ENST00000725553.1;source_transcript_name=ENST00000725553;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725553.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001897;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001897;transcript_name=HG003_chrY_T0001897;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001897:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25270135	25283197	.	+	.	source_transcript=ENST00000725553.1;source_transcript_name=ENST00000725553;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725553.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001897;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001897;transcript_name=HG003_chrY_T0001897;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001897:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25283198	25283265	.	+	.	source_transcript=ENST00000725553.1;source_transcript_name=ENST00000725553;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725553.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001897;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001897;transcript_name=HG003_chrY_T0001897;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001897:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25283266	25297151	.	+	.	source_transcript=ENST00000725553.1;source_transcript_name=ENST00000725553;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725553.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001897;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001897;transcript_name=HG003_chrY_T0001897;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001897:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297152	25297180	.	+	.	source_transcript=ENST00000725553.1;source_transcript_name=ENST00000725553;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725553.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001897;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001897;transcript_name=HG003_chrY_T0001897;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001897:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297181	25299029	.	+	.	source_transcript=ENST00000725553.1;source_transcript_name=ENST00000725553;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725553.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001897;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001897;transcript_name=HG003_chrY_T0001897;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001897:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25299030	25299159	.	+	.	source_transcript=ENST00000725553.1;source_transcript_name=ENST00000725553;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725553.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725553.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001897;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001897;transcript_name=HG003_chrY_T0001897;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001897:4;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	25269368	25299228	1000	+	.	source_transcript=ENST00000725552.1;source_transcript_name=ENST00000725552;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725552.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725552.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001898;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_G0000701;transcript_name=HG003_chrY_T0001898;gene_name=ENSG00000294742;ID=HG003_chrY_T0001898;Name=ENSG00000294742
HG003_chrY	CAT	exon	25269368	25269439	.	+	.	source_transcript=ENST00000725552.1;source_transcript_name=ENST00000725552;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725552.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001898;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001898;transcript_name=HG003_chrY_T0001898;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001898:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25269440	25269887	.	+	.	source_transcript=ENST00000725552.1;source_transcript_name=ENST00000725552;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725552.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001898;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001898;transcript_name=HG003_chrY_T0001898;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001898:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25269888	25270134	.	+	.	source_transcript=ENST00000725552.1;source_transcript_name=ENST00000725552;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725552.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001898;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001898;transcript_name=HG003_chrY_T0001898;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001898:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25270135	25297151	.	+	.	source_transcript=ENST00000725552.1;source_transcript_name=ENST00000725552;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725552.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001898;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001898;transcript_name=HG003_chrY_T0001898;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001898:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297152	25297180	.	+	.	source_transcript=ENST00000725552.1;source_transcript_name=ENST00000725552;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725552.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001898;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001898;transcript_name=HG003_chrY_T0001898;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001898:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297181	25297274	.	+	.	source_transcript=ENST00000725552.1;source_transcript_name=ENST00000725552;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725552.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001898;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001898;transcript_name=HG003_chrY_T0001898;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001898:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297275	25297347	.	+	.	source_transcript=ENST00000725552.1;source_transcript_name=ENST00000725552;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725552.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001898;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001898;transcript_name=HG003_chrY_T0001898;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001898:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297348	25299029	.	+	.	source_transcript=ENST00000725552.1;source_transcript_name=ENST00000725552;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725552.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001898;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001898;transcript_name=HG003_chrY_T0001898;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001898:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25299030	25299228	.	+	.	source_transcript=ENST00000725552.1;source_transcript_name=ENST00000725552;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725552.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725552.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001898;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001898;transcript_name=HG003_chrY_T0001898;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001898:4;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	25269368	25368472	1000	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_G0000701;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=HG003_chrY_T0001899;Name=ENSG00000294742
HG003_chrY	CAT	exon	25269368	25269439	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001899:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25269440	25269887	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001899:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25269888	25270134	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001899:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25270135	25297151	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001899:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297152	25297180	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001899:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297181	25299151	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001899:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25299152	25299224	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001899:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25299225	25300990	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001899:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25300991	25301021	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001899:4;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25301022	25302806	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001899:4;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25302807	25302982	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001899:5;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25302983	25314204	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001899:5;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25314205	25314308	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001899:6;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25314309	25368438	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001899:6;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25368439	25368472	.	+	.	source_transcript=ENST00000725547.1;source_transcript_name=ENST00000725547;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725547.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725547.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001899;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001899;transcript_name=HG003_chrY_T0001899;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001899:7;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	25269390	25314293	1000	+	.	source_transcript=ENST00000725549.1;source_transcript_name=ENST00000725549;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725549.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001900;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_G0000701;transcript_name=HG003_chrY_T0001900;gene_name=ENSG00000294742;ID=HG003_chrY_T0001900;Name=ENSG00000294742
HG003_chrY	CAT	exon	25269390	25269439	.	+	.	source_transcript=ENST00000725549.1;source_transcript_name=ENST00000725549;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725549.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001900;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001900;transcript_name=HG003_chrY_T0001900;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001900:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25269440	25269887	.	+	.	source_transcript=ENST00000725549.1;source_transcript_name=ENST00000725549;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725549.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001900;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001900;transcript_name=HG003_chrY_T0001900;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001900:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25269888	25270134	.	+	.	source_transcript=ENST00000725549.1;source_transcript_name=ENST00000725549;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725549.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001900;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001900;transcript_name=HG003_chrY_T0001900;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001900:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25270135	25297151	.	+	.	source_transcript=ENST00000725549.1;source_transcript_name=ENST00000725549;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725549.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001900;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001900;transcript_name=HG003_chrY_T0001900;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001900:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297152	25297180	.	+	.	source_transcript=ENST00000725549.1;source_transcript_name=ENST00000725549;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725549.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001900;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001900;transcript_name=HG003_chrY_T0001900;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001900:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297181	25314204	.	+	.	source_transcript=ENST00000725549.1;source_transcript_name=ENST00000725549;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725549.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001900;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001900;transcript_name=HG003_chrY_T0001900;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001900:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25314205	25314293	.	+	.	source_transcript=ENST00000725549.1;source_transcript_name=ENST00000725549;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725549.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725549.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001900;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001900;transcript_name=HG003_chrY_T0001900;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001900:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	25269394	25299169	1000	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_G0000701;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=HG003_chrY_T0001901;Name=ENSG00000294742
HG003_chrY	CAT	exon	25269394	25269439	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001901:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25269440	25269887	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001901:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25269888	25270134	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001901:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25270135	25280610	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001901:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25280611	25280748	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001901:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25280749	25283197	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001901:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25283198	25283265	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001901:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25283266	25286623	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001901:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25286624	25286780	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001901:4;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25286781	25297151	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001901:4;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297152	25297180	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001901:5;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297181	25297274	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001901:5;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297275	25297347	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001901:6;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297348	25299029	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001901:6;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25299030	25299169	.	+	.	source_transcript=ENST00000725554.1;source_transcript_name=ENST00000725554;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725554.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725554.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001901;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001901;transcript_name=HG003_chrY_T0001901;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001901:7;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	25269442	25299213	1000	+	.	source_transcript=ENST00000725555.1;source_transcript_name=ENST00000725555;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725555.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725555.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001902;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_G0000701;transcript_name=HG003_chrY_T0001902;gene_name=ENSG00000294742;ID=HG003_chrY_T0001902;Name=ENSG00000294742
HG003_chrY	CAT	exon	25269442	25269539	.	+	.	source_transcript=ENST00000725555.1;source_transcript_name=ENST00000725555;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725555.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725555.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001902;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001902;transcript_name=HG003_chrY_T0001902;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001902:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25269540	25269887	.	+	.	source_transcript=ENST00000725555.1;source_transcript_name=ENST00000725555;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725555.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725555.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001902;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001902;transcript_name=HG003_chrY_T0001902;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001902:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25269888	25270134	.	+	.	source_transcript=ENST00000725555.1;source_transcript_name=ENST00000725555;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725555.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725555.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001902;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001902;transcript_name=HG003_chrY_T0001902;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001902:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25270135	25297151	.	+	.	source_transcript=ENST00000725555.1;source_transcript_name=ENST00000725555;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725555.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725555.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001902;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001902;transcript_name=HG003_chrY_T0001902;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001902:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297152	25297180	.	+	.	source_transcript=ENST00000725555.1;source_transcript_name=ENST00000725555;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725555.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725555.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001902;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001902;transcript_name=HG003_chrY_T0001902;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001902:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297181	25299029	.	+	.	source_transcript=ENST00000725555.1;source_transcript_name=ENST00000725555;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725555.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725555.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001902;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001902;transcript_name=HG003_chrY_T0001902;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001902:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25299030	25299213	.	+	.	source_transcript=ENST00000725555.1;source_transcript_name=ENST00000725555;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725555.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725555.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001902;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001902;transcript_name=HG003_chrY_T0001902;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001902:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	25269887	25314295	1000	+	.	source_transcript=ENST00000725550.1;source_transcript_name=ENST00000725550;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725550.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001903;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_G0000701;transcript_name=HG003_chrY_T0001903;gene_name=ENSG00000294742;ID=HG003_chrY_T0001903;Name=ENSG00000294742
HG003_chrY	CAT	exon	25269887	25270134	.	+	.	source_transcript=ENST00000725550.1;source_transcript_name=ENST00000725550;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001903;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001903;transcript_name=HG003_chrY_T0001903;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001903:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25270135	25297151	.	+	.	source_transcript=ENST00000725550.1;source_transcript_name=ENST00000725550;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001903;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001903;transcript_name=HG003_chrY_T0001903;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001903:0;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25297152	25297180	.	+	.	source_transcript=ENST00000725550.1;source_transcript_name=ENST00000725550;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001903;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001903;transcript_name=HG003_chrY_T0001903;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001903:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25297181	25299151	.	+	.	source_transcript=ENST00000725550.1;source_transcript_name=ENST00000725550;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001903;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001903;transcript_name=HG003_chrY_T0001903;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001903:1;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25299152	25299224	.	+	.	source_transcript=ENST00000725550.1;source_transcript_name=ENST00000725550;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001903;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001903;transcript_name=HG003_chrY_T0001903;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001903:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25299225	25300990	.	+	.	source_transcript=ENST00000725550.1;source_transcript_name=ENST00000725550;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001903;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001903;transcript_name=HG003_chrY_T0001903;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001903:2;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25300991	25301021	.	+	.	source_transcript=ENST00000725550.1;source_transcript_name=ENST00000725550;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001903;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001903;transcript_name=HG003_chrY_T0001903;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001903:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25301022	25302803	.	+	.	source_transcript=ENST00000725550.1;source_transcript_name=ENST00000725550;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001903;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001903;transcript_name=HG003_chrY_T0001903;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001903:3;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25302804	25302982	.	+	.	source_transcript=ENST00000725550.1;source_transcript_name=ENST00000725550;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001903;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001903;transcript_name=HG003_chrY_T0001903;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001903:4;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25302983	25314204	.	+	.	source_transcript=ENST00000725550.1;source_transcript_name=ENST00000725550;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001903;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001903;transcript_name=HG003_chrY_T0001903;gene_name=ENSG00000294742;ID=intron:HG003_chrY_T0001903:4;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25314205	25314295	.	+	.	source_transcript=ENST00000725550.1;source_transcript_name=ENST00000725550;source_gene=ENSG00000294742.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294742.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725550.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725550.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294742;transcript_id=HG003_chrY_T0001903;gene_id=HG003_chrY_G0000701;Parent=HG003_chrY_T0001903;transcript_name=HG003_chrY_T0001903;gene_name=ENSG00000294742;ID=exon:HG003_chrY_T0001903:5;Name=ENSG00000294742;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25270004	25280752	.	+	.	source_gene_common_name=ANKRD36P1;source_gene=ENSG00000188399.5;gene_id=HG003_chrY_G0000702;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ANKRD36P1;gene_sources=liftoff;ID=HG003_chrY_G0000702;Name=ANKRD36P1
HG003_chrY	CAT	transcript	25270004	25280752	1000	+	.	source_transcript=ENST00000344424.4;source_transcript_name=ANKRD36P1-201;source_gene=ENSG00000188399.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188399.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000344424.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344424.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANKRD36P1;transcript_id=HG003_chrY_T0001904;gene_id=HG003_chrY_G0000702;Parent=HG003_chrY_G0000702;transcript_name=HG003_chrY_T0001904;gene_name=ANKRD36P1;ID=HG003_chrY_T0001904;Name=ANKRD36P1
HG003_chrY	CAT	exon	25270004	25270134	.	+	.	source_transcript=ENST00000344424.4;source_transcript_name=ANKRD36P1-201;source_gene=ENSG00000188399.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188399.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000344424.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344424.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANKRD36P1;transcript_id=HG003_chrY_T0001904;gene_id=HG003_chrY_G0000702;Parent=HG003_chrY_T0001904;transcript_name=HG003_chrY_T0001904;gene_name=ANKRD36P1;ID=exon:HG003_chrY_T0001904:0;Name=ANKRD36P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25270135	25274236	.	+	.	source_transcript=ENST00000344424.4;source_transcript_name=ANKRD36P1-201;source_gene=ENSG00000188399.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188399.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000344424.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344424.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANKRD36P1;transcript_id=HG003_chrY_T0001904;gene_id=HG003_chrY_G0000702;Parent=HG003_chrY_T0001904;transcript_name=HG003_chrY_T0001904;gene_name=ANKRD36P1;ID=intron:HG003_chrY_T0001904:0;Name=ANKRD36P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25274237	25274351	.	+	.	source_transcript=ENST00000344424.4;source_transcript_name=ANKRD36P1-201;source_gene=ENSG00000188399.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188399.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000344424.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344424.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANKRD36P1;transcript_id=HG003_chrY_T0001904;gene_id=HG003_chrY_G0000702;Parent=HG003_chrY_T0001904;transcript_name=HG003_chrY_T0001904;gene_name=ANKRD36P1;ID=exon:HG003_chrY_T0001904:1;Name=ANKRD36P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25274352	25274517	.	+	.	source_transcript=ENST00000344424.4;source_transcript_name=ANKRD36P1-201;source_gene=ENSG00000188399.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188399.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000344424.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344424.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANKRD36P1;transcript_id=HG003_chrY_T0001904;gene_id=HG003_chrY_G0000702;Parent=HG003_chrY_T0001904;transcript_name=HG003_chrY_T0001904;gene_name=ANKRD36P1;ID=intron:HG003_chrY_T0001904:1;Name=ANKRD36P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25274518	25274691	.	+	.	source_transcript=ENST00000344424.4;source_transcript_name=ANKRD36P1-201;source_gene=ENSG00000188399.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188399.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000344424.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344424.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANKRD36P1;transcript_id=HG003_chrY_T0001904;gene_id=HG003_chrY_G0000702;Parent=HG003_chrY_T0001904;transcript_name=HG003_chrY_T0001904;gene_name=ANKRD36P1;ID=exon:HG003_chrY_T0001904:2;Name=ANKRD36P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25274692	25279032	.	+	.	source_transcript=ENST00000344424.4;source_transcript_name=ANKRD36P1-201;source_gene=ENSG00000188399.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188399.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000344424.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344424.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANKRD36P1;transcript_id=HG003_chrY_T0001904;gene_id=HG003_chrY_G0000702;Parent=HG003_chrY_T0001904;transcript_name=HG003_chrY_T0001904;gene_name=ANKRD36P1;ID=intron:HG003_chrY_T0001904:2;Name=ANKRD36P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25279033	25279129	.	+	.	source_transcript=ENST00000344424.4;source_transcript_name=ANKRD36P1-201;source_gene=ENSG00000188399.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188399.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000344424.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344424.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANKRD36P1;transcript_id=HG003_chrY_T0001904;gene_id=HG003_chrY_G0000702;Parent=HG003_chrY_T0001904;transcript_name=HG003_chrY_T0001904;gene_name=ANKRD36P1;ID=exon:HG003_chrY_T0001904:3;Name=ANKRD36P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25279130	25280610	.	+	.	source_transcript=ENST00000344424.4;source_transcript_name=ANKRD36P1-201;source_gene=ENSG00000188399.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188399.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000344424.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344424.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANKRD36P1;transcript_id=HG003_chrY_T0001904;gene_id=HG003_chrY_G0000702;Parent=HG003_chrY_T0001904;transcript_name=HG003_chrY_T0001904;gene_name=ANKRD36P1;ID=intron:HG003_chrY_T0001904:3;Name=ANKRD36P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25280611	25280752	.	+	.	source_transcript=ENST00000344424.4;source_transcript_name=ANKRD36P1-201;source_gene=ENSG00000188399.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000188399.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000344424.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000344424.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ANKRD36P1;transcript_id=HG003_chrY_T0001904;gene_id=HG003_chrY_G0000702;Parent=HG003_chrY_T0001904;transcript_name=HG003_chrY_T0001904;gene_name=ANKRD36P1;ID=exon:HG003_chrY_T0001904:4;Name=ANKRD36P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25314202	25314312	.	+	.	source_gene_common_name=ENSG00000277146;source_gene=ENSG00000277146.1;gene_id=HG003_chrY_G0000703;gene_biotype=transcribed_processed_pseudogene;gene_name=ENSG00000277146;gene_sources=liftoff;ID=HG003_chrY_G0000703;Name=ENSG00000277146
HG003_chrY	CAT	transcript	25314202	25314312	1000	+	.	source_transcript=ENST00000619329.1;source_transcript_name=ENST00000619329;source_gene=ENSG00000277146.1;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000277146.1;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000619329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000619329.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277146;transcript_id=HG003_chrY_T0001905;gene_id=HG003_chrY_G0000703;Parent=HG003_chrY_G0000703;transcript_name=HG003_chrY_T0001905;gene_name=ENSG00000277146;ID=HG003_chrY_T0001905;Name=ENSG00000277146
HG003_chrY	CAT	exon	25314202	25314312	.	+	.	source_transcript=ENST00000619329.1;source_transcript_name=ENST00000619329;source_gene=ENSG00000277146.1;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000277146.1;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000619329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000619329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000277146;transcript_id=HG003_chrY_T0001905;gene_id=HG003_chrY_G0000703;Parent=HG003_chrY_T0001905;transcript_name=HG003_chrY_T0001905;gene_name=ENSG00000277146;ID=exon:HG003_chrY_T0001905:0;Name=ENSG00000277146;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25353816	25357776	.	+	.	source_gene_common_name=ENSG00000294758;source_gene=ENSG00000294758.1;alternative_source_transcripts=ENST00000725774.1;gene_id=HG003_chrY_G0000704;gene_biotype=lncRNA;gene_name=ENSG00000294758;gene_sources=liftoff;ID=HG003_chrY_G0000704;Name=ENSG00000294758
HG003_chrY	CAT	transcript	25353816	25357776	1000	+	.	source_transcript=ENST00000725774.1;source_transcript_name=ENST00000725774;source_gene=ENSG00000294758.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294758.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725774.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294758;alternative_source_transcripts=ENST00000725774.1;transcript_id=HG003_chrY_T0001906;gene_id=HG003_chrY_G0000704;Parent=HG003_chrY_G0000704;transcript_name=HG003_chrY_T0001906;gene_name=ENSG00000294758;ID=HG003_chrY_T0001906;Name=ENSG00000294758
HG003_chrY	CAT	exon	25353816	25353854	.	+	.	source_transcript=ENST00000725774.1;source_transcript_name=ENST00000725774;source_gene=ENSG00000294758.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294758.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294758;alternative_source_transcripts=ENST00000725774.1;transcript_id=HG003_chrY_T0001906;gene_id=HG003_chrY_G0000704;Parent=HG003_chrY_T0001906;transcript_name=HG003_chrY_T0001906;gene_name=ENSG00000294758;ID=exon:HG003_chrY_T0001906:0;Name=ENSG00000294758;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25353855	25357096	.	+	.	source_transcript=ENST00000725774.1;source_transcript_name=ENST00000725774;source_gene=ENSG00000294758.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294758.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294758;alternative_source_transcripts=ENST00000725774.1;transcript_id=HG003_chrY_T0001906;gene_id=HG003_chrY_G0000704;Parent=HG003_chrY_T0001906;transcript_name=HG003_chrY_T0001906;gene_name=ENSG00000294758;ID=intron:HG003_chrY_T0001906:0;Name=ENSG00000294758;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25357097	25357153	.	+	.	source_transcript=ENST00000725774.1;source_transcript_name=ENST00000725774;source_gene=ENSG00000294758.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294758.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294758;alternative_source_transcripts=ENST00000725774.1;transcript_id=HG003_chrY_T0001906;gene_id=HG003_chrY_G0000704;Parent=HG003_chrY_T0001906;transcript_name=HG003_chrY_T0001906;gene_name=ENSG00000294758;ID=exon:HG003_chrY_T0001906:1;Name=ENSG00000294758;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25357154	25357512	.	+	.	source_transcript=ENST00000725774.1;source_transcript_name=ENST00000725774;source_gene=ENSG00000294758.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294758.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294758;alternative_source_transcripts=ENST00000725774.1;transcript_id=HG003_chrY_T0001906;gene_id=HG003_chrY_G0000704;Parent=HG003_chrY_T0001906;transcript_name=HG003_chrY_T0001906;gene_name=ENSG00000294758;ID=intron:HG003_chrY_T0001906:1;Name=ENSG00000294758;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25357513	25357776	.	+	.	source_transcript=ENST00000725774.1;source_transcript_name=ENST00000725774;source_gene=ENSG00000294758.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294758.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000725774.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000725774.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294758;alternative_source_transcripts=ENST00000725774.1;transcript_id=HG003_chrY_T0001906;gene_id=HG003_chrY_G0000704;Parent=HG003_chrY_T0001906;transcript_name=HG003_chrY_T0001906;gene_name=ENSG00000294758;ID=exon:HG003_chrY_T0001906:2;Name=ENSG00000294758;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25368439	25439924	.	+	.	source_gene_common_name=TPTE2P4;source_gene=ENSG00000215506.5;gene_id=HG003_chrY_G0000705;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=TPTE2P4;gene_sources=liftoff;ID=HG003_chrY_G0000705;Name=TPTE2P4
HG003_chrY	CAT	transcript	25368439	25439924	1000	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_G0000705;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=HG003_chrY_T0001907;Name=TPTE2P4
HG003_chrY	CAT	exon	25368439	25368492	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:0;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25368493	25375281	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:0;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25375282	25375335	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:1;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25375336	25375880	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:1;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25375881	25375934	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:2;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25375935	25386076	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:2;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25386077	25386136	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:3;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25386137	25393009	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:3;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25393010	25393060	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:4;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25393061	25394548	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:4;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25394549	25394710	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:5;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25394711	25401194	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:5;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25401195	25401314	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:6;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25401315	25402967	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:6;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25402968	25403067	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:7;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25403068	25403213	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:7;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25403214	25403276	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:8;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25403277	25404008	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:8;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25404009	25404073	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:9;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25404074	25417222	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:9;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25417223	25417287	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:10;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25417288	25418108	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:10;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25418109	25418183	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:11;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25418184	25418281	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:11;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25418282	25418370	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:12;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25418371	25424552	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:12;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25424553	25424613	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:13;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25424614	25426414	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:13;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25426415	25426496	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:14;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25426497	25430096	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:14;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25430097	25430202	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:15;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25430203	25432119	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:15;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25432120	25432199	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:16;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25432200	25436160	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:16;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25436161	25436251	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:17;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25436252	25437660	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:17;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25437661	25437731	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:18;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25437732	25439822	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=intron:HG003_chrY_T0001907:18;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25439823	25439924	.	+	.	source_transcript=ENST00000258589.8;source_transcript_name=TPTE2P4-201;source_gene=ENSG00000215506.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000215506.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000258589.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000258589.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TPTE2P4;transcript_id=HG003_chrY_T0001907;gene_id=HG003_chrY_G0000705;Parent=HG003_chrY_T0001907;transcript_name=HG003_chrY_T0001907;gene_name=TPTE2P4;ID=exon:HG003_chrY_T0001907:19;Name=TPTE2P4;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25409650	25409968	.	+	.	source_gene_common_name=CYCSP49;source_gene=ENSG00000224240.1;alternative_source_transcripts=ENST00000420810.1;gene_id=HG003_chrY_G0000706;gene_biotype=processed_pseudogene;gene_name=CYCSP49;gene_sources=liftoff;ID=HG003_chrY_G0000706;Name=CYCSP49
HG003_chrY	CAT	transcript	25409650	25409968	1000	+	.	source_transcript=ENST00000420810.1;source_transcript_name=CYCSP49-201;source_gene=ENSG00000224240.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224240.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420810.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CYCSP49;alternative_source_transcripts=ENST00000420810.1;transcript_id=HG003_chrY_T0001908;gene_id=HG003_chrY_G0000706;Parent=HG003_chrY_G0000706;transcript_name=HG003_chrY_T0001908;gene_name=CYCSP49;ID=HG003_chrY_T0001908;Name=CYCSP49
HG003_chrY	CAT	exon	25409650	25409968	.	+	.	source_transcript=ENST00000420810.1;source_transcript_name=CYCSP49-201;source_gene=ENSG00000224240.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224240.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420810.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420810.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CYCSP49;alternative_source_transcripts=ENST00000420810.1;transcript_id=HG003_chrY_T0001908;gene_id=HG003_chrY_G0000706;Parent=HG003_chrY_T0001908;transcript_name=HG003_chrY_T0001908;gene_name=CYCSP49;ID=exon:HG003_chrY_T0001908:0;Name=CYCSP49;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25446878	25451837	.	-	.	source_gene_common_name=SLC25A15P1;source_gene=ENSG00000227629.1;alternative_source_transcripts=ENST00000456738.1;gene_id=HG003_chrY_G0000707;gene_biotype=unprocessed_pseudogene;gene_name=SLC25A15P1;gene_sources=liftoff;ID=HG003_chrY_G0000707;Name=SLC25A15P1
HG003_chrY	CAT	transcript	25446878	25451837	1000	-	.	source_transcript=ENST00000456738.1;source_transcript_name=SLC25A15P1-201;source_gene=ENSG00000227629.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227629.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456738.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A15P1;alternative_source_transcripts=ENST00000456738.1;transcript_id=HG003_chrY_T0001909;gene_id=HG003_chrY_G0000707;Parent=HG003_chrY_G0000707;transcript_name=HG003_chrY_T0001909;gene_name=SLC25A15P1;ID=HG003_chrY_T0001909;Name=SLC25A15P1
HG003_chrY	CAT	exon	25446878	25447002	.	-	.	source_transcript=ENST00000456738.1;source_transcript_name=SLC25A15P1-201;source_gene=ENSG00000227629.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227629.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A15P1;alternative_source_transcripts=ENST00000456738.1;transcript_id=HG003_chrY_T0001909;gene_id=HG003_chrY_G0000707;Parent=HG003_chrY_T0001909;transcript_name=HG003_chrY_T0001909;gene_name=SLC25A15P1;ID=exon:HG003_chrY_T0001909:0;Name=SLC25A15P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25447003	25447633	.	-	.	source_transcript=ENST00000456738.1;source_transcript_name=SLC25A15P1-201;source_gene=ENSG00000227629.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227629.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A15P1;alternative_source_transcripts=ENST00000456738.1;transcript_id=HG003_chrY_T0001909;gene_id=HG003_chrY_G0000707;Parent=HG003_chrY_T0001909;transcript_name=HG003_chrY_T0001909;gene_name=SLC25A15P1;ID=intron:HG003_chrY_T0001909:0;Name=SLC25A15P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25447634	25447796	.	-	.	source_transcript=ENST00000456738.1;source_transcript_name=SLC25A15P1-201;source_gene=ENSG00000227629.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227629.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A15P1;alternative_source_transcripts=ENST00000456738.1;transcript_id=HG003_chrY_T0001909;gene_id=HG003_chrY_G0000707;Parent=HG003_chrY_T0001909;transcript_name=HG003_chrY_T0001909;gene_name=SLC25A15P1;ID=exon:HG003_chrY_T0001909:1;Name=SLC25A15P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25447797	25451783	.	-	.	source_transcript=ENST00000456738.1;source_transcript_name=SLC25A15P1-201;source_gene=ENSG00000227629.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227629.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A15P1;alternative_source_transcripts=ENST00000456738.1;transcript_id=HG003_chrY_T0001909;gene_id=HG003_chrY_G0000707;Parent=HG003_chrY_T0001909;transcript_name=HG003_chrY_T0001909;gene_name=SLC25A15P1;ID=intron:HG003_chrY_T0001909:1;Name=SLC25A15P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25451784	25451837	.	-	.	source_transcript=ENST00000456738.1;source_transcript_name=SLC25A15P1-201;source_gene=ENSG00000227629.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227629.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000456738.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456738.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SLC25A15P1;alternative_source_transcripts=ENST00000456738.1;transcript_id=HG003_chrY_T0001909;gene_id=HG003_chrY_G0000707;Parent=HG003_chrY_T0001909;transcript_name=HG003_chrY_T0001909;gene_name=SLC25A15P1;ID=exon:HG003_chrY_T0001909:2;Name=SLC25A15P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25455087	25494892	.	-	.	source_gene_common_name=PARP4P1;source_gene=ENSG00000237917.1;alternative_source_transcripts=ENST00000435945.1;gene_id=HG003_chrY_G0000708;gene_biotype=unprocessed_pseudogene;gene_name=PARP4P1;gene_sources=liftoff;ID=HG003_chrY_G0000708;Name=PARP4P1
HG003_chrY	CAT	transcript	25455087	25494892	1000	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_G0000708;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=HG003_chrY_T0001910;Name=PARP4P1
HG003_chrY	CAT	exon	25455087	25455281	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:0;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25455282	25461126	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=intron:HG003_chrY_T0001910:0;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25461127	25461258	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:1;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25461259	25471949	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=intron:HG003_chrY_T0001910:1;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25471950	25472044	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:2;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25472045	25474390	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=intron:HG003_chrY_T0001910:2;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25474391	25475199	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:3;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25475200	25475531	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=intron:HG003_chrY_T0001910:3;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25475532	25475769	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:4;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25475770	25482011	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=intron:HG003_chrY_T0001910:4;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25482012	25482134	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:5;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25482135	25482750	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=intron:HG003_chrY_T0001910:5;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25482751	25482847	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:6;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25482848	25483824	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=intron:HG003_chrY_T0001910:6;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25483825	25483905	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:7;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25483906	25488181	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=intron:HG003_chrY_T0001910:7;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25488182	25488261	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:8;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25488262	25488509	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=intron:HG003_chrY_T0001910:8;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25488510	25488676	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:9;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25488677	25490885	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=intron:HG003_chrY_T0001910:9;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25490886	25490988	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:10;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25490989	25493584	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=intron:HG003_chrY_T0001910:10;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25493585	25493671	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:11;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	25493672	25494762	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=intron:HG003_chrY_T0001910:11;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	25494763	25494892	.	-	.	source_transcript=ENST00000435945.1;source_transcript_name=PARP4P1-201;source_gene=ENSG00000237917.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237917.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435945.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435945.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PARP4P1;alternative_source_transcripts=ENST00000435945.1;transcript_id=HG003_chrY_T0001910;gene_id=HG003_chrY_G0000708;Parent=HG003_chrY_T0001910;transcript_name=HG003_chrY_T0001910;gene_name=PARP4P1;ID=exon:HG003_chrY_T0001910:12;Name=PARP4P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	25486759	25487398	.	-	.	source_gene_common_name=CCNQP2;source_gene=ENSG00000231514.1;alternative_source_transcripts=ENST00000435741.1;gene_id=HG003_chrY_G0000709;gene_biotype=processed_pseudogene;gene_name=CCNQP2;gene_sources=liftoff;ID=HG003_chrY_G0000709;Name=CCNQP2
HG003_chrY	CAT	transcript	25486759	25487398	1000	-	.	source_transcript=ENST00000435741.1;source_transcript_name=CCNQP2-201;source_gene=ENSG00000231514.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000231514.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000435741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435741.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CCNQP2;alternative_source_transcripts=ENST00000435741.1;transcript_id=HG003_chrY_T0001911;gene_id=HG003_chrY_G0000709;Parent=HG003_chrY_G0000709;transcript_name=HG003_chrY_T0001911;gene_name=CCNQP2;ID=HG003_chrY_T0001911;Name=CCNQP2
HG003_chrY	CAT	exon	25486759	25487398	.	-	.	source_transcript=ENST00000435741.1;source_transcript_name=CCNQP2-201;source_gene=ENSG00000231514.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000231514.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000435741.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435741.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CCNQP2;alternative_source_transcripts=ENST00000435741.1;transcript_id=HG003_chrY_T0001911;gene_id=HG003_chrY_G0000709;Parent=HG003_chrY_T0001911;transcript_name=HG003_chrY_T0001911;gene_name=CCNQP2;ID=exon:HG003_chrY_T0001911:0;Name=CCNQP2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	58884401	58884645	.	+	.	source_gene_common_name=CTBP2P1;source_gene=ENSG00000235857.1;alternative_source_transcripts=ENST00000431853.1,ENST00000431853.1;gene_id=HG003_chrY_G0000710;gene_biotype=processed_pseudogene;gene_name=CTBP2P1;gene_sources=liftoff;ID=HG003_chrY_G0000710;Name=CTBP2P1
HG003_chrY	CAT	transcript	58884401	58884645	1000	+	.	source_transcript=ENST00000431853.1;source_transcript_name=CTBP2P1-201;source_gene=ENSG00000235857.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000235857.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000431853.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431853.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CTBP2P1;alternative_source_transcripts=ENST00000431853.1,ENST00000431853.1;transcript_id=HG003_chrY_T0001912;gene_id=HG003_chrY_G0000710;Parent=HG003_chrY_G0000710;transcript_name=HG003_chrY_T0001912;gene_name=CTBP2P1;ID=HG003_chrY_T0001912;Name=CTBP2P1
HG003_chrY	CAT	exon	58884401	58884645	.	+	.	source_transcript=ENST00000431853.1;source_transcript_name=CTBP2P1-201;source_gene=ENSG00000235857.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000235857.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000431853.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431853.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CTBP2P1;alternative_source_transcripts=ENST00000431853.1,ENST00000431853.1;transcript_id=HG003_chrY_T0001912;gene_id=HG003_chrY_G0000710;Parent=HG003_chrY_T0001912;transcript_name=HG003_chrY_T0001912;gene_name=CTBP2P1;ID=exon:HG003_chrY_T0001912:0;Name=CTBP2P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	58911005	58911271	.	+	.	source_gene_common_name=ENSG00000305394;source_gene=ENSG00000305394.1;alternative_source_transcripts=ENST00000810723.1,ENST00000810723.1;gene_id=HG003_chrY_G0000711;gene_biotype=lncRNA;gene_name=ENSG00000305394;gene_sources=liftoff;ID=HG003_chrY_G0000711;Name=ENSG00000305394
HG003_chrY	CAT	transcript	58911005	58911271	1000	+	.	source_transcript=ENST00000810723.1;source_transcript_name=ENST00000810723;source_gene=ENSG00000305394.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305394.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000810723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000810723.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305394;alternative_source_transcripts=ENST00000810723.1,ENST00000810723.1;transcript_id=HG003_chrY_T0001913;gene_id=HG003_chrY_G0000711;Parent=HG003_chrY_G0000711;transcript_name=HG003_chrY_T0001913;gene_name=ENSG00000305394;ID=HG003_chrY_T0001913;Name=ENSG00000305394
HG003_chrY	CAT	exon	58911005	58911271	.	+	.	source_transcript=ENST00000810723.1;source_transcript_name=ENST00000810723;source_gene=ENSG00000305394.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305394.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000810723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000810723.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305394;alternative_source_transcripts=ENST00000810723.1,ENST00000810723.1;transcript_id=HG003_chrY_T0001913;gene_id=HG003_chrY_G0000711;Parent=HG003_chrY_T0001913;transcript_name=HG003_chrY_T0001913;gene_name=ENSG00000305394;ID=exon:HG003_chrY_T0001913:0;Name=ENSG00000305394;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	58948601	58983236	.	-	.	source_gene_common_name=ENSG00000310550;source_gene=ENSG00000310550.1;alternative_source_transcripts=ENST00000850721.1,ENST00000850721.1;gene_id=HG003_chrY_G0000712;gene_biotype=lncRNA;gene_name=ENSG00000310550;gene_sources=liftoff;ID=HG003_chrY_G0000712;Name=ENSG00000310550
HG003_chrY	CAT	transcript	58948601	58983241	1000	-	.	source_transcript=ENST00000850721.1;source_transcript_name=ENST00000850721;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850721.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850721.1,ENST00000850721.1;transcript_id=HG003_chrY_T0001914;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_G0000712;transcript_name=HG003_chrY_T0001914;gene_name=ENSG00000310550;ID=HG003_chrY_T0001914;Name=ENSG00000310550
HG003_chrY	CAT	exon	58948601	58948704	.	-	.	source_transcript=ENST00000850721.1;source_transcript_name=ENST00000850721;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850721.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850721.1,ENST00000850721.1;transcript_id=HG003_chrY_T0001914;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001914;transcript_name=HG003_chrY_T0001914;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001914:0;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58948705	58952910	.	-	.	source_transcript=ENST00000850721.1;source_transcript_name=ENST00000850721;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850721.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850721.1,ENST00000850721.1;transcript_id=HG003_chrY_T0001914;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001914;transcript_name=HG003_chrY_T0001914;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001914:0;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58952911	58953046	.	-	.	source_transcript=ENST00000850721.1;source_transcript_name=ENST00000850721;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850721.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850721.1,ENST00000850721.1;transcript_id=HG003_chrY_T0001914;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001914;transcript_name=HG003_chrY_T0001914;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001914:1;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58953047	58955240	.	-	.	source_transcript=ENST00000850721.1;source_transcript_name=ENST00000850721;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850721.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850721.1,ENST00000850721.1;transcript_id=HG003_chrY_T0001914;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001914;transcript_name=HG003_chrY_T0001914;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001914:1;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58955241	58955417	.	-	.	source_transcript=ENST00000850721.1;source_transcript_name=ENST00000850721;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850721.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850721.1,ENST00000850721.1;transcript_id=HG003_chrY_T0001914;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001914;transcript_name=HG003_chrY_T0001914;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001914:2;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58955418	58974189	.	-	.	source_transcript=ENST00000850721.1;source_transcript_name=ENST00000850721;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850721.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850721.1,ENST00000850721.1;transcript_id=HG003_chrY_T0001914;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001914;transcript_name=HG003_chrY_T0001914;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001914:2;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58974190	58974340	.	-	.	source_transcript=ENST00000850721.1;source_transcript_name=ENST00000850721;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850721.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850721.1,ENST00000850721.1;transcript_id=HG003_chrY_T0001914;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001914;transcript_name=HG003_chrY_T0001914;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001914:3;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58974341	58983112	.	-	.	source_transcript=ENST00000850721.1;source_transcript_name=ENST00000850721;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850721.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850721.1,ENST00000850721.1;transcript_id=HG003_chrY_T0001914;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001914;transcript_name=HG003_chrY_T0001914;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001914:3;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58983113	58983241	.	-	.	source_transcript=ENST00000850721.1;source_transcript_name=ENST00000850721;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850721.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850721.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850721.1,ENST00000850721.1;transcript_id=HG003_chrY_T0001914;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001914;transcript_name=HG003_chrY_T0001914;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001914:4;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	58948608	58983236	1000	-	.	source_transcript=ENST00000850722.1;source_transcript_name=ENST00000850722;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850722.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850722.1,ENST00000850722.1;transcript_id=HG003_chrY_T0001915;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_G0000712;transcript_name=HG003_chrY_T0001915;gene_name=ENSG00000310550;ID=HG003_chrY_T0001915;Name=ENSG00000310550
HG003_chrY	CAT	exon	58948608	58948704	.	-	.	source_transcript=ENST00000850722.1;source_transcript_name=ENST00000850722;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850722.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850722.1,ENST00000850722.1;transcript_id=HG003_chrY_T0001915;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001915;transcript_name=HG003_chrY_T0001915;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001915:0;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58948705	58952910	.	-	.	source_transcript=ENST00000850722.1;source_transcript_name=ENST00000850722;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850722.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850722.1,ENST00000850722.1;transcript_id=HG003_chrY_T0001915;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001915;transcript_name=HG003_chrY_T0001915;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001915:0;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58952911	58953046	.	-	.	source_transcript=ENST00000850722.1;source_transcript_name=ENST00000850722;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850722.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850722.1,ENST00000850722.1;transcript_id=HG003_chrY_T0001915;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001915;transcript_name=HG003_chrY_T0001915;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001915:1;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58953047	58955240	.	-	.	source_transcript=ENST00000850722.1;source_transcript_name=ENST00000850722;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850722.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850722.1,ENST00000850722.1;transcript_id=HG003_chrY_T0001915;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001915;transcript_name=HG003_chrY_T0001915;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001915:1;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58955241	58955417	.	-	.	source_transcript=ENST00000850722.1;source_transcript_name=ENST00000850722;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850722.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850722.1,ENST00000850722.1;transcript_id=HG003_chrY_T0001915;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001915;transcript_name=HG003_chrY_T0001915;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001915:2;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58955418	58974189	.	-	.	source_transcript=ENST00000850722.1;source_transcript_name=ENST00000850722;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850722.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850722.1,ENST00000850722.1;transcript_id=HG003_chrY_T0001915;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001915;transcript_name=HG003_chrY_T0001915;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001915:2;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58974190	58974340	.	-	.	source_transcript=ENST00000850722.1;source_transcript_name=ENST00000850722;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850722.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850722.1,ENST00000850722.1;transcript_id=HG003_chrY_T0001915;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001915;transcript_name=HG003_chrY_T0001915;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001915:3;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58974341	58983141	.	-	.	source_transcript=ENST00000850722.1;source_transcript_name=ENST00000850722;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850722.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850722.1,ENST00000850722.1;transcript_id=HG003_chrY_T0001915;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001915;transcript_name=HG003_chrY_T0001915;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001915:3;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58983142	58983236	.	-	.	source_transcript=ENST00000850722.1;source_transcript_name=ENST00000850722;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850722.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850722.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850722.1,ENST00000850722.1;transcript_id=HG003_chrY_T0001915;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001915;transcript_name=HG003_chrY_T0001915;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001915:4;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	58948611	58983236	1000	-	.	source_transcript=ENST00000850723.1;source_transcript_name=ENST00000850723;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850723.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850723.1,ENST00000850723.1;transcript_id=HG003_chrY_T0001916;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_G0000712;transcript_name=HG003_chrY_T0001916;gene_name=ENSG00000310550;ID=HG003_chrY_T0001916;Name=ENSG00000310550
HG003_chrY	CAT	exon	58948611	58948704	.	-	.	source_transcript=ENST00000850723.1;source_transcript_name=ENST00000850723;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850723.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850723.1,ENST00000850723.1;transcript_id=HG003_chrY_T0001916;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001916;transcript_name=HG003_chrY_T0001916;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001916:0;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58948705	58952910	.	-	.	source_transcript=ENST00000850723.1;source_transcript_name=ENST00000850723;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850723.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850723.1,ENST00000850723.1;transcript_id=HG003_chrY_T0001916;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001916;transcript_name=HG003_chrY_T0001916;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001916:0;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58952911	58953046	.	-	.	source_transcript=ENST00000850723.1;source_transcript_name=ENST00000850723;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850723.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850723.1,ENST00000850723.1;transcript_id=HG003_chrY_T0001916;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001916;transcript_name=HG003_chrY_T0001916;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001916:1;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58953047	58955077	.	-	.	source_transcript=ENST00000850723.1;source_transcript_name=ENST00000850723;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850723.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850723.1,ENST00000850723.1;transcript_id=HG003_chrY_T0001916;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001916;transcript_name=HG003_chrY_T0001916;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001916:1;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58955078	58955417	.	-	.	source_transcript=ENST00000850723.1;source_transcript_name=ENST00000850723;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850723.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850723.1,ENST00000850723.1;transcript_id=HG003_chrY_T0001916;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001916;transcript_name=HG003_chrY_T0001916;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001916:2;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58955418	58983112	.	-	.	source_transcript=ENST00000850723.1;source_transcript_name=ENST00000850723;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850723.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850723.1,ENST00000850723.1;transcript_id=HG003_chrY_T0001916;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001916;transcript_name=HG003_chrY_T0001916;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001916:2;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58983113	58983236	.	-	.	source_transcript=ENST00000850723.1;source_transcript_name=ENST00000850723;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850723.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850723.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850723.1,ENST00000850723.1;transcript_id=HG003_chrY_T0001916;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001916;transcript_name=HG003_chrY_T0001916;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001916:3;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	58948611	58983182	1000	-	.	source_transcript=ENST00000850724.1;source_transcript_name=ENST00000850724;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850724.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850724.1,ENST00000850724.1;transcript_id=HG003_chrY_T0001917;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_G0000712;transcript_name=HG003_chrY_T0001917;gene_name=ENSG00000310550;ID=HG003_chrY_T0001917;Name=ENSG00000310550
HG003_chrY	CAT	exon	58948611	58948704	.	-	.	source_transcript=ENST00000850724.1;source_transcript_name=ENST00000850724;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850724.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850724.1,ENST00000850724.1;transcript_id=HG003_chrY_T0001917;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001917;transcript_name=HG003_chrY_T0001917;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001917:0;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58948705	58952910	.	-	.	source_transcript=ENST00000850724.1;source_transcript_name=ENST00000850724;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850724.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850724.1,ENST00000850724.1;transcript_id=HG003_chrY_T0001917;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001917;transcript_name=HG003_chrY_T0001917;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001917:0;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58952911	58953046	.	-	.	source_transcript=ENST00000850724.1;source_transcript_name=ENST00000850724;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850724.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850724.1,ENST00000850724.1;transcript_id=HG003_chrY_T0001917;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001917;transcript_name=HG003_chrY_T0001917;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001917:1;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58953047	58955240	.	-	.	source_transcript=ENST00000850724.1;source_transcript_name=ENST00000850724;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850724.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850724.1,ENST00000850724.1;transcript_id=HG003_chrY_T0001917;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001917;transcript_name=HG003_chrY_T0001917;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001917:1;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58955241	58955417	.	-	.	source_transcript=ENST00000850724.1;source_transcript_name=ENST00000850724;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850724.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850724.1,ENST00000850724.1;transcript_id=HG003_chrY_T0001917;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001917;transcript_name=HG003_chrY_T0001917;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001917:2;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58955418	58983112	.	-	.	source_transcript=ENST00000850724.1;source_transcript_name=ENST00000850724;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850724.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850724.1,ENST00000850724.1;transcript_id=HG003_chrY_T0001917;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001917;transcript_name=HG003_chrY_T0001917;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001917:2;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58983113	58983182	.	-	.	source_transcript=ENST00000850724.1;source_transcript_name=ENST00000850724;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850724.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850724.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850724.1,ENST00000850724.1;transcript_id=HG003_chrY_T0001917;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001917;transcript_name=HG003_chrY_T0001917;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001917:3;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	58982256	58983328	1000	-	.	source_transcript=ENST00000850725.1;source_transcript_name=ENST00000850725;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850725.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850725.1,ENST00000850725.1;transcript_id=HG003_chrY_T0001918;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_G0000712;transcript_name=HG003_chrY_T0001918;gene_name=ENSG00000310550;ID=HG003_chrY_T0001918;Name=ENSG00000310550
HG003_chrY	CAT	exon	58982256	58982468	.	-	.	source_transcript=ENST00000850725.1;source_transcript_name=ENST00000850725;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850725.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850725.1,ENST00000850725.1;transcript_id=HG003_chrY_T0001918;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001918;transcript_name=HG003_chrY_T0001918;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001918:0;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58982469	58982783	.	-	.	source_transcript=ENST00000850725.1;source_transcript_name=ENST00000850725;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850725.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850725.1,ENST00000850725.1;transcript_id=HG003_chrY_T0001918;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001918;transcript_name=HG003_chrY_T0001918;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001918:0;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58982784	58982873	.	-	.	source_transcript=ENST00000850725.1;source_transcript_name=ENST00000850725;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850725.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850725.1,ENST00000850725.1;transcript_id=HG003_chrY_T0001918;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001918;transcript_name=HG003_chrY_T0001918;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001918:1;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58982874	58983112	.	-	.	source_transcript=ENST00000850725.1;source_transcript_name=ENST00000850725;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850725.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850725.1,ENST00000850725.1;transcript_id=HG003_chrY_T0001918;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001918;transcript_name=HG003_chrY_T0001918;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001918:1;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58983113	58983328	.	-	.	source_transcript=ENST00000850725.1;source_transcript_name=ENST00000850725;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850725.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850725.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850725.1,ENST00000850725.1;transcript_id=HG003_chrY_T0001918;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001918;transcript_name=HG003_chrY_T0001918;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001918:2;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	58982266	58983213	1000	-	.	source_transcript=ENST00000850726.1;source_transcript_name=ENST00000850726;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850726.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850726.1,ENST00000850726.1;transcript_id=HG003_chrY_T0001919;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_G0000712;transcript_name=HG003_chrY_T0001919;gene_name=ENSG00000310550;ID=HG003_chrY_T0001919;Name=ENSG00000310550
HG003_chrY	CAT	exon	58982266	58982468	.	-	.	source_transcript=ENST00000850726.1;source_transcript_name=ENST00000850726;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850726.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850726.1,ENST00000850726.1;transcript_id=HG003_chrY_T0001919;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001919;transcript_name=HG003_chrY_T0001919;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001919:0;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	58982469	58982783	.	-	.	source_transcript=ENST00000850726.1;source_transcript_name=ENST00000850726;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850726.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850726.1,ENST00000850726.1;transcript_id=HG003_chrY_T0001919;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001919;transcript_name=HG003_chrY_T0001919;gene_name=ENSG00000310550;ID=intron:HG003_chrY_T0001919:0;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	58982784	58983213	.	-	.	source_transcript=ENST00000850726.1;source_transcript_name=ENST00000850726;source_gene=ENSG00000310550.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310550.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850726.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850726.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310550;alternative_source_transcripts=ENST00000850726.1,ENST00000850726.1;transcript_id=HG003_chrY_T0001919;gene_id=HG003_chrY_G0000712;Parent=HG003_chrY_T0001919;transcript_name=HG003_chrY_T0001919;gene_name=ENSG00000310550;ID=exon:HG003_chrY_T0001919:1;Name=ENSG00000310550;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59020401	59021279	.	-	.	source_gene_common_name=TRPC6P1;source_gene=ENSG00000292368.1;gene_id=HG003_chrY_G0000713;gene_biotype=processed_pseudogene;gene_name=TRPC6P1;gene_sources=liftoff;ID=HG003_chrY_G0000713;Name=TRPC6P1
HG003_chrY	CAT	transcript	59020401	59021279	1000	-	.	source_transcript=ENST00000711267.1;source_transcript_name=TRPC6P1-202;source_gene=ENSG00000292368.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292368.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711267.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711267.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRPC6P1;transcript_id=HG003_chrY_T0001920;gene_id=HG003_chrY_G0000713;Parent=HG003_chrY_G0000713;transcript_name=HG003_chrY_T0001920;gene_name=TRPC6P1;ID=HG003_chrY_T0001920;Name=TRPC6P1
HG003_chrY	CAT	exon	59020401	59021279	.	-	.	source_transcript=ENST00000711267.1;source_transcript_name=TRPC6P1-202;source_gene=ENSG00000292368.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292368.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711267.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711267.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRPC6P1;transcript_id=HG003_chrY_T0001920;gene_id=HG003_chrY_G0000713;Parent=HG003_chrY_T0001920;transcript_name=HG003_chrY_T0001920;gene_name=TRPC6P1;ID=exon:HG003_chrY_T0001920:0;Name=TRPC6P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59047022	59048013	.	-	.	source_gene_common_name=AMD1P2;source_gene=ENSG00000292364.1;alternative_source_transcripts=ENST00000711258.1,ENST00000711258.1;gene_id=HG003_chrY_G0000714;gene_biotype=processed_pseudogene;gene_name=AMD1P2;gene_sources=liftoff;ID=HG003_chrY_G0000714;Name=AMD1P2
HG003_chrY	CAT	transcript	59047022	59048013	1000	-	.	source_transcript=ENST00000711258.1;source_transcript_name=AMD1P2-202;source_gene=ENSG00000292364.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292364.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711258.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711258.1;transcript_score=199.899;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMD1P2;alternative_source_transcripts=ENST00000711258.1,ENST00000711258.1;transcript_id=HG003_chrY_T0001921;gene_id=HG003_chrY_G0000714;Parent=HG003_chrY_G0000714;transcript_name=HG003_chrY_T0001921;gene_name=AMD1P2;ID=HG003_chrY_T0001921;Name=AMD1P2
HG003_chrY	CAT	exon	59047022	59048013	.	-	.	source_transcript=ENST00000711258.1;source_transcript_name=AMD1P2-202;source_gene=ENSG00000292364.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292364.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711258.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711258.1;transcript_score=199.899;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=AMD1P2;alternative_source_transcripts=ENST00000711258.1,ENST00000711258.1;transcript_id=HG003_chrY_T0001921;gene_id=HG003_chrY_G0000714;Parent=HG003_chrY_T0001921;transcript_name=HG003_chrY_T0001921;gene_name=AMD1P2;ID=exon:HG003_chrY_T0001921:0;Name=AMD1P2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59094073	59094322	.	+	.	source_gene_common_name=DPH3P2;source_gene=ENSG00000292365.1;alternative_source_transcripts=ENST00000711259.1,ENST00000711259.1;gene_id=HG003_chrY_G0000715;gene_biotype=processed_pseudogene;gene_name=DPH3P2;gene_sources=liftoff;ID=HG003_chrY_G0000715;Name=DPH3P2
HG003_chrY	CAT	transcript	59094073	59094322	1000	+	.	source_transcript=ENST00000711259.1;source_transcript_name=DPH3P2-202;source_gene=ENSG00000292365.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292365.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711259.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711259.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DPH3P2;alternative_source_transcripts=ENST00000711259.1,ENST00000711259.1;transcript_id=HG003_chrY_T0001922;gene_id=HG003_chrY_G0000715;Parent=HG003_chrY_G0000715;transcript_name=HG003_chrY_T0001922;gene_name=DPH3P2;ID=HG003_chrY_T0001922;Name=DPH3P2
HG003_chrY	CAT	exon	59094073	59094322	.	+	.	source_transcript=ENST00000711259.1;source_transcript_name=DPH3P2-202;source_gene=ENSG00000292365.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292365.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711259.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711259.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DPH3P2;alternative_source_transcripts=ENST00000711259.1,ENST00000711259.1;transcript_id=HG003_chrY_T0001922;gene_id=HG003_chrY_G0000715;Parent=HG003_chrY_T0001922;transcript_name=HG003_chrY_T0001922;gene_name=DPH3P2;ID=exon:HG003_chrY_T0001922:0;Name=DPH3P2;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59099815	59162249	.	+	.	source_gene_common_name=VAMP7;source_gene=ENSG00000292366.1;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;gene_id=HG003_chrY_G0000716;gene_biotype=protein_coding;gene_name=VAMP7;gene_sources=liftoff;ID=HG003_chrY_G0000716;Name=VAMP7
HG003_chrY	CAT	transcript	59099815	59162249	100	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_G0000716;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=HG003_chrY_T0001923;Name=VAMP7
HG003_chrY	CAT	exon	59099815	59099918	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=exon:HG003_chrY_T0001923:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=intron:HG003_chrY_T0001923:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108083	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=exon:HG003_chrY_T0001923:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59107938	59108083	.	+	0	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001923:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59107938	59107940	.	+	0	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=start_codon:HG003_chrY_T0001923;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108084	59114096	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=intron:HG003_chrY_T0001923:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59114097	59114154	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=exon:HG003_chrY_T0001923:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59114097	59114154	.	+	1	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001923:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59114155	59116585	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=intron:HG003_chrY_T0001923:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=exon:HG003_chrY_T0001923:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59116586	59116723	.	+	0	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001923:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=intron:HG003_chrY_T0001923:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=exon:HG003_chrY_T0001923:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59118973	59119063	.	+	0	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001923:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59138296	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=intron:HG003_chrY_T0001923:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59138297	59138364	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=exon:HG003_chrY_T0001923:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59138297	59138364	.	+	2	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001923:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59138365	59158181	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=intron:HG003_chrY_T0001923:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158274	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=exon:HG003_chrY_T0001923:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59158182	59158274	.	+	0	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001923:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59158275	59160362	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=intron:HG003_chrY_T0001923:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59160363	59162249	.	+	.	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=exon:HG003_chrY_T0001923:7;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59160363	59160431	.	+	0	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001923:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59160429	59160431	.	+	0	source_transcript=ENST00000711260.1;source_transcript_name=VAMP7-207;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711260.1,ENST00000711260.1;transcript_id=HG003_chrY_T0001923;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001923;transcript_name=HG003_chrY_T0001923;gene_name=VAMP7;ID=stop_codon:HG003_chrY_T0001923;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59099828	59160389	1000	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_G0000716;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=HG003_chrY_T0001924;Name=VAMP7
HG003_chrY	CAT	exon	59099828	59099918	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=exon:HG003_chrY_T0001924:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=intron:HG003_chrY_T0001924:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108104	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=exon:HG003_chrY_T0001924:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108105	59114096	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=intron:HG003_chrY_T0001924:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59114097	59114154	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=exon:HG003_chrY_T0001924:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59114155	59116585	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=intron:HG003_chrY_T0001924:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=exon:HG003_chrY_T0001924:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=intron:HG003_chrY_T0001924:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=exon:HG003_chrY_T0001924:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59138296	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=intron:HG003_chrY_T0001924:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59138297	59138364	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=exon:HG003_chrY_T0001924:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59138365	59158181	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=intron:HG003_chrY_T0001924:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158274	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=exon:HG003_chrY_T0001924:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59158275	59160362	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=intron:HG003_chrY_T0001924:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59160363	59160389	.	+	.	source_transcript=ENST00000711261.1;source_transcript_name=VAMP7-208;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711261.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711261.1;transcript_score=299.865;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711261.1,ENST00000711261.1;transcript_id=HG003_chrY_T0001924;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001924;transcript_name=HG003_chrY_T0001924;gene_name=VAMP7;ID=exon:HG003_chrY_T0001924:7;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59099830	59160424	1000	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_G0000716;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=HG003_chrY_T0001925;Name=VAMP7
HG003_chrY	CAT	exon	59099830	59099918	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=exon:HG003_chrY_T0001925:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=intron:HG003_chrY_T0001925:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108083	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=exon:HG003_chrY_T0001925:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59107938	59108083	.	+	0	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001925:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59107938	59107940	.	+	0	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=start_codon:HG003_chrY_T0001925;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108084	59116585	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=intron:HG003_chrY_T0001925:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=exon:HG003_chrY_T0001925:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59116586	59116619	.	+	1	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001925:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59116617	59116619	.	+	0	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=stop_codon:HG003_chrY_T0001925;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=intron:HG003_chrY_T0001925:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=exon:HG003_chrY_T0001925:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59138296	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=intron:HG003_chrY_T0001925:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59138297	59138364	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=exon:HG003_chrY_T0001925:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59138365	59158181	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=intron:HG003_chrY_T0001925:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158274	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=exon:HG003_chrY_T0001925:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59158275	59160362	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=intron:HG003_chrY_T0001925:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59160363	59160424	.	+	.	source_transcript=ENST00000711262.1;source_transcript_name=VAMP7-209;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=nonsense_mediated_decay;alignment_id=ENST00000711262.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711262.1;transcript_score=299.856;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711262.1,ENST00000711262.1;transcript_id=HG003_chrY_T0001925;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001925;transcript_name=HG003_chrY_T0001925;gene_name=VAMP7;ID=exon:HG003_chrY_T0001925:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59099842	59158271	1000	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_G0000716;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=HG003_chrY_T0001926;Name=VAMP7
HG003_chrY	CAT	exon	59099842	59099918	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=exon:HG003_chrY_T0001926:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=intron:HG003_chrY_T0001926:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108079	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=exon:HG003_chrY_T0001926:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108080	59114096	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=intron:HG003_chrY_T0001926:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59114097	59114154	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=exon:HG003_chrY_T0001926:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59114155	59116585	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=intron:HG003_chrY_T0001926:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=exon:HG003_chrY_T0001926:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=intron:HG003_chrY_T0001926:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=exon:HG003_chrY_T0001926:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59138296	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=intron:HG003_chrY_T0001926:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59138297	59138364	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=exon:HG003_chrY_T0001926:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59138365	59158181	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=intron:HG003_chrY_T0001926:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158271	.	+	.	source_transcript=ENST00000711263.1;source_transcript_name=VAMP7-210;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711263.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711263.1;transcript_score=299.851;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711263.1,ENST00000711263.1;transcript_id=HG003_chrY_T0001926;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001926;transcript_name=HG003_chrY_T0001926;gene_name=VAMP7;ID=exon:HG003_chrY_T0001926:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59099845	59162249	100	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_G0000716;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=HG003_chrY_T0001927;Name=VAMP7
HG003_chrY	CAT	exon	59099845	59099918	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=exon:HG003_chrY_T0001927:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=intron:HG003_chrY_T0001927:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108083	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=exon:HG003_chrY_T0001927:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59107938	59108083	.	+	0	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001927:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59107938	59107940	.	+	0	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=start_codon:HG003_chrY_T0001927;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108084	59114096	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=intron:HG003_chrY_T0001927:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59114097	59114154	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=exon:HG003_chrY_T0001927:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59114097	59114154	.	+	1	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001927:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59114155	59116585	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=intron:HG003_chrY_T0001927:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=exon:HG003_chrY_T0001927:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59116586	59116723	.	+	0	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001927:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=intron:HG003_chrY_T0001927:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=exon:HG003_chrY_T0001927:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59118973	59119063	.	+	0	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001927:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59158181	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=intron:HG003_chrY_T0001927:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158274	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=exon:HG003_chrY_T0001927:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59158182	59158274	.	+	2	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001927:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59158275	59160362	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=intron:HG003_chrY_T0001927:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59160363	59162249	.	+	.	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=exon:HG003_chrY_T0001927:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59160363	59160619	.	+	2	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001927:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59160617	59160619	.	+	0	source_transcript=ENST00000711264.1;source_transcript_name=VAMP7-211;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711264.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711264.1,ENST00000711264.1;transcript_id=HG003_chrY_T0001927;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001927;transcript_name=HG003_chrY_T0001927;gene_name=VAMP7;ID=stop_codon:HG003_chrY_T0001927;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59099848	59160469	100	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_G0000716;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=HG003_chrY_T0001928;Name=VAMP7
HG003_chrY	CAT	exon	59099848	59099918	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=exon:HG003_chrY_T0001928:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59099919	59107928	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=intron:HG003_chrY_T0001928:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59107929	59108018	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=exon:HG003_chrY_T0001928:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59107938	59108018	.	+	0	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001928:0;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59107938	59107940	.	+	0	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=start_codon:HG003_chrY_T0001928;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59108019	59116585	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=intron:HG003_chrY_T0001928:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59116586	59116723	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=exon:HG003_chrY_T0001928:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59116586	59116723	.	+	0	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001928:1;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59116724	59118972	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=intron:HG003_chrY_T0001928:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59118973	59119063	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=exon:HG003_chrY_T0001928:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59118973	59119063	.	+	0	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001928:2;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59119064	59138296	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=intron:HG003_chrY_T0001928:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59138297	59138364	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=exon:HG003_chrY_T0001928:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59138297	59138364	.	+	2	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001928:3;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59138365	59158181	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=intron:HG003_chrY_T0001928:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59158182	59158274	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=exon:HG003_chrY_T0001928:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59158182	59158274	.	+	0	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001928:4;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59158275	59160362	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=intron:HG003_chrY_T0001928:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59160363	59160469	.	+	.	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=exon:HG003_chrY_T0001928:6;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59160363	59160431	.	+	0	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=CDS:HG003_chrY_T0001928:5;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59160429	59160431	.	+	0	source_transcript=ENST00000711265.1;source_transcript_name=VAMP7-212;source_gene=ENSG00000292366.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292366.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711265.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711265.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=VAMP7;alternative_source_transcripts=ENST00000711265.1,ENST00000711265.1;transcript_id=HG003_chrY_T0001928;gene_id=HG003_chrY_G0000716;Parent=HG003_chrY_T0001928;transcript_name=HG003_chrY_T0001928;gene_name=VAMP7;ID=stop_codon:HG003_chrY_T0001928;Name=VAMP7;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59170598	59177805	.	-	.	source_gene_common_name=ENSG00000310555;source_gene=ENSG00000310555.1;alternative_source_transcripts=ENST00000850734.1,ENST00000850734.1;gene_id=HG003_chrY_G0000717;gene_biotype=lncRNA;gene_name=ENSG00000310555;gene_sources=liftoff;ID=HG003_chrY_G0000717;Name=ENSG00000310555
HG003_chrY	CAT	transcript	59170598	59177805	1000	-	.	source_transcript=ENST00000850734.1;source_transcript_name=ENST00000850734;source_gene=ENSG00000310555.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310555.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850734.1;transcript_score=299.119;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310555;alternative_source_transcripts=ENST00000850734.1,ENST00000850734.1;transcript_id=HG003_chrY_T0001929;gene_id=HG003_chrY_G0000717;Parent=HG003_chrY_G0000717;transcript_name=HG003_chrY_T0001929;gene_name=ENSG00000310555;ID=HG003_chrY_T0001929;Name=ENSG00000310555
HG003_chrY	CAT	exon	59170598	59170880	.	-	.	source_transcript=ENST00000850734.1;source_transcript_name=ENST00000850734;source_gene=ENSG00000310555.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310555.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850734.1;transcript_score=299.119;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310555;alternative_source_transcripts=ENST00000850734.1,ENST00000850734.1;transcript_id=HG003_chrY_T0001929;gene_id=HG003_chrY_G0000717;Parent=HG003_chrY_T0001929;transcript_name=HG003_chrY_T0001929;gene_name=ENSG00000310555;ID=exon:HG003_chrY_T0001929:0;Name=ENSG00000310555;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59170881	59177634	.	-	.	source_transcript=ENST00000850734.1;source_transcript_name=ENST00000850734;source_gene=ENSG00000310555.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310555.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850734.1;transcript_score=299.119;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310555;alternative_source_transcripts=ENST00000850734.1,ENST00000850734.1;transcript_id=HG003_chrY_T0001929;gene_id=HG003_chrY_G0000717;Parent=HG003_chrY_T0001929;transcript_name=HG003_chrY_T0001929;gene_name=ENSG00000310555;ID=intron:HG003_chrY_T0001929:0;Name=ENSG00000310555;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59177635	59177805	.	-	.	source_transcript=ENST00000850734.1;source_transcript_name=ENST00000850734;source_gene=ENSG00000310555.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310555.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850734.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850734.1;transcript_score=299.119;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310555;alternative_source_transcripts=ENST00000850734.1,ENST00000850734.1;transcript_id=HG003_chrY_T0001929;gene_id=HG003_chrY_G0000717;Parent=HG003_chrY_T0001929;transcript_name=HG003_chrY_T0001929;gene_name=ENSG00000310555;ID=exon:HG003_chrY_T0001929:1;Name=ENSG00000310555;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59197473	59197806	.	-	.	source_gene_common_name=ELOCP24;source_gene=ENSG00000292367.1;alternative_source_transcripts=ENST00000711266.1,ENST00000711266.1;gene_id=HG003_chrY_G0000718;gene_biotype=processed_pseudogene;gene_name=ELOCP24;gene_sources=liftoff;ID=HG003_chrY_G0000718;Name=ELOCP24
HG003_chrY	CAT	transcript	59197473	59197806	1000	-	.	source_transcript=ENST00000711266.1;source_transcript_name=ELOCP24-202;source_gene=ENSG00000292367.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292367.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711266.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711266.1;transcript_score=199.701;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP24;alternative_source_transcripts=ENST00000711266.1,ENST00000711266.1;transcript_id=HG003_chrY_T0001930;gene_id=HG003_chrY_G0000718;Parent=HG003_chrY_G0000718;transcript_name=HG003_chrY_T0001930;gene_name=ELOCP24;ID=HG003_chrY_T0001930;Name=ELOCP24
HG003_chrY	CAT	exon	59197473	59197806	.	-	.	source_transcript=ENST00000711266.1;source_transcript_name=ELOCP24-202;source_gene=ENSG00000292367.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292367.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711266.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711266.1;transcript_score=199.701;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP24;alternative_source_transcripts=ENST00000711266.1,ENST00000711266.1;transcript_id=HG003_chrY_T0001930;gene_id=HG003_chrY_G0000718;Parent=HG003_chrY_T0001930;transcript_name=HG003_chrY_T0001930;gene_name=ELOCP24;ID=exon:HG003_chrY_T0001930:0;Name=ELOCP24;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59203849	59204727	.	-	.	source_gene_common_name=TRPC6P1;source_gene=ENSG00000292368.1;alternative_source_transcripts=ENST00000711267.1,ENST00000711267.1;gene_id=HG003_chrY_G0000719;gene_biotype=processed_pseudogene;gene_name=TRPC6P1;gene_sources=liftoff;ID=HG003_chrY_G0000719;Name=TRPC6P1
HG003_chrY	CAT	transcript	59203849	59204727	1000	-	.	source_transcript=ENST00000711267.1;source_transcript_name=TRPC6P1-202;source_gene=ENSG00000292368.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292368.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711267.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711267.1;transcript_score=199.772;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRPC6P1;alternative_source_transcripts=ENST00000711267.1,ENST00000711267.1;transcript_id=HG003_chrY_T0001931;gene_id=HG003_chrY_G0000719;Parent=HG003_chrY_G0000719;transcript_name=HG003_chrY_T0001931;gene_name=TRPC6P1;ID=HG003_chrY_T0001931;Name=TRPC6P1
HG003_chrY	CAT	exon	59203849	59204727	.	-	.	source_transcript=ENST00000711267.1;source_transcript_name=TRPC6P1-202;source_gene=ENSG00000292368.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000292368.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000711267.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711267.1;transcript_score=199.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRPC6P1;alternative_source_transcripts=ENST00000711267.1,ENST00000711267.1;transcript_id=HG003_chrY_T0001931;gene_id=HG003_chrY_G0000719;Parent=HG003_chrY_T0001931;transcript_name=HG003_chrY_T0001931;gene_name=TRPC6P1;ID=exon:HG003_chrY_T0001931:0;Name=TRPC6P1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59216174	59231492	.	+	.	source_gene_common_name=IL9R;source_gene=ENSG00000292373.2;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;gene_id=HG003_chrY_G0000720;gene_biotype=protein_coding;gene_name=IL9R;gene_sources=liftoff;ID=HG003_chrY_G0000720;Name=IL9R
HG003_chrY	CAT	transcript	59216174	59229292	100	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_G0000720;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=HG003_chrY_T0001932;Name=IL9R
HG003_chrY	CAT	exon	59216174	59216265	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=exon:HG003_chrY_T0001932:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216238	59216265	.	+	0	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=CDS:HG003_chrY_T0001932:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216238	59216240	.	+	0	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=start_codon:HG003_chrY_T0001932;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59221387	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=intron:HG003_chrY_T0001932:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221388	59221501	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=exon:HG003_chrY_T0001932:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221388	59221501	.	+	2	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=CDS:HG003_chrY_T0001932:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=intron:HG003_chrY_T0001932:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=exon:HG003_chrY_T0001932:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=CDS:HG003_chrY_T0001932:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222158	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=intron:HG003_chrY_T0001932:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222159	59222337	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=exon:HG003_chrY_T0001932:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222159	59222337	.	+	1	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=CDS:HG003_chrY_T0001932:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222901	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=intron:HG003_chrY_T0001932:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222902	59223047	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=exon:HG003_chrY_T0001932:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222902	59223047	.	+	2	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=CDS:HG003_chrY_T0001932:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223759	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=intron:HG003_chrY_T0001932:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223760	59223961	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=exon:HG003_chrY_T0001932:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223760	59223961	.	+	0	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=CDS:HG003_chrY_T0001932:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=intron:HG003_chrY_T0001932:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=exon:HG003_chrY_T0001932:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=CDS:HG003_chrY_T0001932:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59226005	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=intron:HG003_chrY_T0001932:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=exon:HG003_chrY_T0001932:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59226006	59226090	.	+	1	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=CDS:HG003_chrY_T0001932:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226091	59228290	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=intron:HG003_chrY_T0001932:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59229292	.	+	.	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=exon:HG003_chrY_T0001932:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228884	.	+	0	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=CDS:HG003_chrY_T0001932:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228882	59228884	.	+	0	source_transcript=ENST00000711286.1;source_transcript_name=IL9R-205;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711286.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711286.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711286.1,ENST00000711286.1;transcript_id=HG003_chrY_T0001932;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001932;transcript_name=HG003_chrY_T0001932;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0001932;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216184	59231492	100	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_G0000720;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=HG003_chrY_T0001933;Name=IL9R
HG003_chrY	CAT	exon	59216184	59216265	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=exon:HG003_chrY_T0001933:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59216222	59216265	.	+	0	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=CDS:HG003_chrY_T0001933:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59216222	59216224	.	+	0	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=start_codon:HG003_chrY_T0001933;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59219885	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=intron:HG003_chrY_T0001933:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59219886	59219986	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=exon:HG003_chrY_T0001933:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59219886	59219986	.	+	1	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=CDS:HG003_chrY_T0001933:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59219987	59221363	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=intron:HG003_chrY_T0001933:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221364	59221501	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=exon:HG003_chrY_T0001933:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221364	59221501	.	+	2	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=CDS:HG003_chrY_T0001933:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59221502	59221930	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=intron:HG003_chrY_T0001933:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221931	59222042	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=exon:HG003_chrY_T0001933:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59221931	59222042	.	+	2	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=CDS:HG003_chrY_T0001933:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222043	59222165	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=intron:HG003_chrY_T0001933:3;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222166	59222337	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=exon:HG003_chrY_T0001933:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222166	59222337	.	+	1	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=CDS:HG003_chrY_T0001933:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59222338	59222930	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=intron:HG003_chrY_T0001933:4;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59222931	59223047	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=exon:HG003_chrY_T0001933:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59222931	59223047	.	+	0	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=CDS:HG003_chrY_T0001933:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59223759	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=intron:HG003_chrY_T0001933:5;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59223760	59223961	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=exon:HG003_chrY_T0001933:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59223760	59223961	.	+	0	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=CDS:HG003_chrY_T0001933:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223962	59224564	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=intron:HG003_chrY_T0001933:6;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59224565	59224670	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=exon:HG003_chrY_T0001933:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59224565	59224670	.	+	2	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=CDS:HG003_chrY_T0001933:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59228290	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=intron:HG003_chrY_T0001933:7;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59228291	59231492	.	+	.	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=exon:HG003_chrY_T0001933:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59228291	59228327	.	+	1	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=CDS:HG003_chrY_T0001933:8;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59228325	59228327	.	+	0	source_transcript=ENST00000850823.1;source_transcript_name=IL9R-208;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000850823.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850823.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000850823.1,ENST00000850823.1;transcript_id=HG003_chrY_T0001933;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001933;transcript_name=HG003_chrY_T0001933;gene_name=IL9R;ID=stop_codon:HG003_chrY_T0001933;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59216212	59221452	1000	+	.	source_transcript=ENST00000711288.1;source_transcript_name=IL9R-206;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711288.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711288.1,ENST00000711288.1;transcript_id=HG003_chrY_T0001934;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_G0000720;transcript_name=HG003_chrY_T0001934;gene_name=IL9R;ID=HG003_chrY_T0001934;Name=IL9R
HG003_chrY	CAT	exon	59216212	59216265	.	+	.	source_transcript=ENST00000711288.1;source_transcript_name=IL9R-206;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711288.1,ENST00000711288.1;transcript_id=HG003_chrY_T0001934;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001934;transcript_name=HG003_chrY_T0001934;gene_name=IL9R;ID=exon:HG003_chrY_T0001934:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59216266	59219807	.	+	.	source_transcript=ENST00000711288.1;source_transcript_name=IL9R-206;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711288.1,ENST00000711288.1;transcript_id=HG003_chrY_T0001934;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001934;transcript_name=HG003_chrY_T0001934;gene_name=IL9R;ID=intron:HG003_chrY_T0001934:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59219808	59219986	.	+	.	source_transcript=ENST00000711288.1;source_transcript_name=IL9R-206;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711288.1,ENST00000711288.1;transcript_id=HG003_chrY_T0001934;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001934;transcript_name=HG003_chrY_T0001934;gene_name=IL9R;ID=exon:HG003_chrY_T0001934:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59219987	59221387	.	+	.	source_transcript=ENST00000711288.1;source_transcript_name=IL9R-206;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711288.1,ENST00000711288.1;transcript_id=HG003_chrY_T0001934;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001934;transcript_name=HG003_chrY_T0001934;gene_name=IL9R;ID=intron:HG003_chrY_T0001934:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59221388	59221452	.	+	.	source_transcript=ENST00000711288.1;source_transcript_name=IL9R-206;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711288.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711288.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711288.1,ENST00000711288.1;transcript_id=HG003_chrY_T0001934;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001934;transcript_name=HG003_chrY_T0001934;gene_name=IL9R;ID=exon:HG003_chrY_T0001934:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59224596	59226528	1000	+	.	source_transcript=ENST00000711289.1;source_transcript_name=IL9R-207;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711289.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711289.1,ENST00000711289.1;transcript_id=HG003_chrY_T0001936;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_G0000720;transcript_name=HG003_chrY_T0001936;gene_name=IL9R;ID=HG003_chrY_T0001936;Name=IL9R
HG003_chrY	CAT	exon	59224596	59224670	.	+	.	source_transcript=ENST00000711289.1;source_transcript_name=IL9R-207;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711289.1,ENST00000711289.1;transcript_id=HG003_chrY_T0001936;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001936;transcript_name=HG003_chrY_T0001936;gene_name=IL9R;ID=exon:HG003_chrY_T0001936:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59224671	59226005	.	+	.	source_transcript=ENST00000711289.1;source_transcript_name=IL9R-207;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711289.1,ENST00000711289.1;transcript_id=HG003_chrY_T0001936;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001936;transcript_name=HG003_chrY_T0001936;gene_name=IL9R;ID=intron:HG003_chrY_T0001936:0;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=ENST00000711289.1;source_transcript_name=IL9R-207;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711289.1,ENST00000711289.1;transcript_id=HG003_chrY_T0001936;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001936;transcript_name=HG003_chrY_T0001936;gene_name=IL9R;ID=exon:HG003_chrY_T0001936:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59226091	59226380	.	+	.	source_transcript=ENST00000711289.1;source_transcript_name=IL9R-207;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711289.1,ENST00000711289.1;transcript_id=HG003_chrY_T0001936;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001936;transcript_name=HG003_chrY_T0001936;gene_name=IL9R;ID=intron:HG003_chrY_T0001936:1;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226381	59226528	.	+	.	source_transcript=ENST00000711289.1;source_transcript_name=IL9R-207;source_gene=ENSG00000292373.2;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292373.2;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711289.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711289.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=IL9R;alternative_source_transcripts=ENST00000711289.1,ENST00000711289.1;transcript_id=HG003_chrY_T0001936;gene_id=HG003_chrY_G0000720;Parent=HG003_chrY_T0001936;transcript_name=HG003_chrY_T0001936;gene_name=IL9R;ID=exon:HG003_chrY_T0001936:2;Name=IL9R;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59222700	59226090	.	+	.	source_gene_common_name=ENSG00000292369;source_gene=ENSG00000292369.1;alternative_source_transcripts=ENST00000711268.1,ENST00000711268.1;gene_id=HG003_chrY_G0000721;gene_biotype=lncRNA;gene_name=ENSG00000292369;gene_sources=liftoff;ID=HG003_chrY_G0000721;Name=ENSG00000292369
HG003_chrY	CAT	transcript	59222700	59226090	1000	+	.	source_transcript=ENST00000711268.1;source_transcript_name=ENST00000711268;source_gene=ENSG00000292369.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292369.1;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711268.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711268.1;transcript_score=256.01599999999996;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292369;alternative_source_transcripts=ENST00000711268.1,ENST00000711268.1;transcript_id=HG003_chrY_T0001935;gene_id=HG003_chrY_G0000721;Parent=HG003_chrY_G0000721;transcript_name=HG003_chrY_T0001935;gene_name=ENSG00000292369;ID=HG003_chrY_T0001935;Name=ENSG00000292369
HG003_chrY	CAT	exon	59222700	59223047	.	+	.	source_transcript=ENST00000711268.1;source_transcript_name=ENST00000711268;source_gene=ENSG00000292369.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292369.1;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711268.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711268.1;transcript_score=256.01599999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292369;alternative_source_transcripts=ENST00000711268.1,ENST00000711268.1;transcript_id=HG003_chrY_T0001935;gene_id=HG003_chrY_G0000721;Parent=HG003_chrY_T0001935;transcript_name=HG003_chrY_T0001935;gene_name=ENSG00000292369;ID=exon:HG003_chrY_T0001935:0;Name=ENSG00000292369;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59223048	59226005	.	+	.	source_transcript=ENST00000711268.1;source_transcript_name=ENST00000711268;source_gene=ENSG00000292369.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292369.1;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711268.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711268.1;transcript_score=256.01599999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292369;alternative_source_transcripts=ENST00000711268.1,ENST00000711268.1;transcript_id=HG003_chrY_T0001935;gene_id=HG003_chrY_G0000721;Parent=HG003_chrY_T0001935;transcript_name=HG003_chrY_T0001935;gene_name=ENSG00000292369;ID=intron:HG003_chrY_T0001935:0;Name=ENSG00000292369;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59226006	59226090	.	+	.	source_transcript=ENST00000711268.1;source_transcript_name=ENST00000711268;source_gene=ENSG00000292369.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292369.1;gene_biotype=lncRNA;transcript_biotype=retained_intron;alignment_id=ENST00000711268.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711268.1;transcript_score=256.01599999999996;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000292369;alternative_source_transcripts=ENST00000711268.1,ENST00000711268.1;transcript_id=HG003_chrY_T0001935;gene_id=HG003_chrY_G0000721;Parent=HG003_chrY_T0001935;transcript_name=HG003_chrY_T0001935;gene_name=ENSG00000292369;ID=exon:HG003_chrY_T0001935:1;Name=ENSG00000292369;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59233091	59235363	.	-	.	source_gene_common_name=WASIR1;source_gene=ENSG00000292370.2;alternative_source_transcripts=ENST00000850720.1,ENST00000850720.1;gene_id=HG003_chrY_G0000722;gene_biotype=lncRNA;gene_name=WASIR1;gene_sources=liftoff;ID=HG003_chrY_G0000722;Name=WASIR1
HG003_chrY	CAT	transcript	59233091	59235356	1000	-	.	source_transcript=ENST00000850720.1;source_transcript_name=WASIR1-203;source_gene=ENSG00000292370.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292370.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850720.1;transcript_score=299.756;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASIR1;alternative_source_transcripts=ENST00000850720.1,ENST00000850720.1;transcript_id=HG003_chrY_T0001937;gene_id=HG003_chrY_G0000722;Parent=HG003_chrY_G0000722;transcript_name=HG003_chrY_T0001937;gene_name=WASIR1;ID=HG003_chrY_T0001937;Name=WASIR1
HG003_chrY	CAT	exon	59233091	59234101	.	-	.	source_transcript=ENST00000850720.1;source_transcript_name=WASIR1-203;source_gene=ENSG00000292370.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292370.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850720.1;transcript_score=299.756;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASIR1;alternative_source_transcripts=ENST00000850720.1,ENST00000850720.1;transcript_id=HG003_chrY_T0001937;gene_id=HG003_chrY_G0000722;Parent=HG003_chrY_T0001937;transcript_name=HG003_chrY_T0001937;gene_name=WASIR1;ID=exon:HG003_chrY_T0001937:0;Name=WASIR1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59234102	59235139	.	-	.	source_transcript=ENST00000850720.1;source_transcript_name=WASIR1-203;source_gene=ENSG00000292370.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292370.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850720.1;transcript_score=299.756;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASIR1;alternative_source_transcripts=ENST00000850720.1,ENST00000850720.1;transcript_id=HG003_chrY_T0001937;gene_id=HG003_chrY_G0000722;Parent=HG003_chrY_T0001937;transcript_name=HG003_chrY_T0001937;gene_name=WASIR1;ID=intron:HG003_chrY_T0001937:0;Name=WASIR1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59235140	59235356	.	-	.	source_transcript=ENST00000850720.1;source_transcript_name=WASIR1-203;source_gene=ENSG00000292370.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292370.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850720.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850720.1;transcript_score=299.756;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASIR1;alternative_source_transcripts=ENST00000850720.1,ENST00000850720.1;transcript_id=HG003_chrY_T0001937;gene_id=HG003_chrY_G0000722;Parent=HG003_chrY_T0001937;transcript_name=HG003_chrY_T0001937;gene_name=WASIR1;ID=exon:HG003_chrY_T0001937:1;Name=WASIR1;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59233091	59235363	1000	-	.	source_transcript=ENST00000850824.1;source_transcript_name=WASIR1-204;source_gene=ENSG00000292370.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292370.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850824.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850824.1;transcript_score=299.73;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASIR1;alternative_source_transcripts=ENST00000850824.1,ENST00000850824.1;transcript_id=HG003_chrY_T0001938;gene_id=HG003_chrY_G0000722;Parent=HG003_chrY_G0000722;transcript_name=HG003_chrY_T0001938;gene_name=WASIR1;ID=HG003_chrY_T0001938;Name=WASIR1
HG003_chrY	CAT	exon	59233091	59233976	.	-	.	source_transcript=ENST00000850824.1;source_transcript_name=WASIR1-204;source_gene=ENSG00000292370.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292370.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850824.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850824.1;transcript_score=299.73;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASIR1;alternative_source_transcripts=ENST00000850824.1,ENST00000850824.1;transcript_id=HG003_chrY_T0001938;gene_id=HG003_chrY_G0000722;Parent=HG003_chrY_T0001938;transcript_name=HG003_chrY_T0001938;gene_name=WASIR1;ID=exon:HG003_chrY_T0001938:0;Name=WASIR1;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59233977	59235139	.	-	.	source_transcript=ENST00000850824.1;source_transcript_name=WASIR1-204;source_gene=ENSG00000292370.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292370.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850824.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850824.1;transcript_score=299.73;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASIR1;alternative_source_transcripts=ENST00000850824.1,ENST00000850824.1;transcript_id=HG003_chrY_T0001938;gene_id=HG003_chrY_G0000722;Parent=HG003_chrY_T0001938;transcript_name=HG003_chrY_T0001938;gene_name=WASIR1;ID=intron:HG003_chrY_T0001938:0;Name=WASIR1;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59235140	59235363	.	-	.	source_transcript=ENST00000850824.1;source_transcript_name=WASIR1-204;source_gene=ENSG00000292370.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000292370.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850824.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850824.1;transcript_score=299.73;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASIR1;alternative_source_transcripts=ENST00000850824.1,ENST00000850824.1;transcript_id=HG003_chrY_T0001938;gene_id=HG003_chrY_G0000722;Parent=HG003_chrY_T0001938;transcript_name=HG003_chrY_T0001938;gene_name=WASIR1;ID=exon:HG003_chrY_T0001938:1;Name=WASIR1;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59239288	59242922	.	+	.	source_gene_common_name=WASH6P;source_gene=ENSG00000292372.1;alternative_source_transcripts=ENST00000711271.1,ENST00000711271.1;gene_id=HG003_chrY_G0000723;gene_biotype=protein_coding;gene_name=WASH6P;gene_sources=liftoff;ID=HG003_chrY_G0000723;Name=WASH6P
HG003_chrY	CAT	transcript	59239288	59240026	1000	+	.	source_transcript=ENST00000711271.1;source_transcript_name=WASH6P-216;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711271.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711271.1;transcript_score=252.392;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711271.1,ENST00000711271.1;transcript_id=HG003_chrY_T0001939;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001939;gene_name=WASH6P;ID=HG003_chrY_T0001939;Name=WASH6P
HG003_chrY	CAT	exon	59239288	59239610	.	+	.	source_transcript=ENST00000711271.1;source_transcript_name=WASH6P-216;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711271.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711271.1;transcript_score=252.392;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711271.1,ENST00000711271.1;transcript_id=HG003_chrY_T0001939;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001939;transcript_name=HG003_chrY_T0001939;gene_name=WASH6P;ID=exon:HG003_chrY_T0001939:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59239611	59239968	.	+	.	source_transcript=ENST00000711271.1;source_transcript_name=WASH6P-216;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711271.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711271.1;transcript_score=252.392;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711271.1,ENST00000711271.1;transcript_id=HG003_chrY_T0001939;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001939;transcript_name=HG003_chrY_T0001939;gene_name=WASH6P;ID=intron:HG003_chrY_T0001939:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59239969	59240026	.	+	.	source_transcript=ENST00000711271.1;source_transcript_name=WASH6P-216;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711271.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711271.1;transcript_score=252.392;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711271.1,ENST00000711271.1;transcript_id=HG003_chrY_T0001939;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001939;transcript_name=HG003_chrY_T0001939;gene_name=WASH6P;ID=exon:HG003_chrY_T0001939:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59239423	59242586	100	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=HG003_chrY_T0001940;Name=WASH6P
HG003_chrY	CAT	exon	59239423	59239610	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=exon:HG003_chrY_T0001940:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59239423	59239610	.	+	0	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=CDS:HG003_chrY_T0001940:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	start_codon	59239423	59239425	.	+	0	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=start_codon:HG003_chrY_T0001940;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59239611	59240041	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=intron:HG003_chrY_T0001940:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240042	59240046	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=exon:HG003_chrY_T0001940:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59240042	59240046	.	+	1	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=CDS:HG003_chrY_T0001940:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240047	59240223	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=intron:HG003_chrY_T0001940:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240224	59240425	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=exon:HG003_chrY_T0001940:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59240224	59240425	.	+	0	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=CDS:HG003_chrY_T0001940:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240426	59240513	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=intron:HG003_chrY_T0001940:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240514	59240672	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=exon:HG003_chrY_T0001940:3;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59240514	59240672	.	+	2	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=CDS:HG003_chrY_T0001940:3;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240673	59241331	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=intron:HG003_chrY_T0001940:3;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59241332	59241484	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=exon:HG003_chrY_T0001940:4;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59241332	59241484	.	+	2	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=CDS:HG003_chrY_T0001940:4;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59241485	59242243	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=intron:HG003_chrY_T0001940:4;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59242244	59242312	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=exon:HG003_chrY_T0001940:5;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59242244	59242312	.	+	2	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=CDS:HG003_chrY_T0001940:5;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59242313	59242452	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=intron:HG003_chrY_T0001940:5;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59242453	59242586	.	+	.	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=exon:HG003_chrY_T0001940:6;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	CDS	59242453	59242586	.	+	2	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=CDS:HG003_chrY_T0001940:6;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	stop_codon	59242584	59242586	.	+	0	source_transcript=ENST00000711272.1;source_transcript_name=WASH6P-217;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000711272.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711272.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=False;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001940;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001940;transcript_name=HG003_chrY_T0001940;gene_name=WASH6P;ID=stop_codon:HG003_chrY_T0001940;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59239790	59242875	1000	+	.	source_transcript=ENST00000711273.1;source_transcript_name=WASH6P-218;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711273.1;transcript_score=240.763;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711273.1,ENST00000711273.1;transcript_id=HG003_chrY_T0001941;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001941;gene_name=WASH6P;ID=HG003_chrY_T0001941;Name=WASH6P
HG003_chrY	CAT	exon	59239790	59240421	.	+	.	source_transcript=ENST00000711273.1;source_transcript_name=WASH6P-218;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711273.1;transcript_score=240.763;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711273.1,ENST00000711273.1;transcript_id=HG003_chrY_T0001941;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001941;transcript_name=HG003_chrY_T0001941;gene_name=WASH6P;ID=exon:HG003_chrY_T0001941:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240422	59240513	.	+	.	source_transcript=ENST00000711273.1;source_transcript_name=WASH6P-218;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711273.1;transcript_score=240.763;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711273.1,ENST00000711273.1;transcript_id=HG003_chrY_T0001941;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001941;transcript_name=HG003_chrY_T0001941;gene_name=WASH6P;ID=intron:HG003_chrY_T0001941:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240514	59242875	.	+	.	source_transcript=ENST00000711273.1;source_transcript_name=WASH6P-218;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711273.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711273.1;transcript_score=240.763;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711273.1,ENST00000711273.1;transcript_id=HG003_chrY_T0001941;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001941;transcript_name=HG003_chrY_T0001941;gene_name=WASH6P;ID=exon:HG003_chrY_T0001941:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59239908	59240419	1000	+	.	source_transcript=ENST00000711274.1;source_transcript_name=WASH6P-219;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711274.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711274.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001942;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001942;gene_name=WASH6P;ID=HG003_chrY_T0001942;Name=WASH6P
HG003_chrY	CAT	exon	59239908	59240041	.	+	.	source_transcript=ENST00000711274.1;source_transcript_name=WASH6P-219;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711274.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711274.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001942;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001942;transcript_name=HG003_chrY_T0001942;gene_name=WASH6P;ID=exon:HG003_chrY_T0001942:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240042	59240223	.	+	.	source_transcript=ENST00000711274.1;source_transcript_name=WASH6P-219;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711274.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711274.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001942;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001942;transcript_name=HG003_chrY_T0001942;gene_name=WASH6P;ID=intron:HG003_chrY_T0001942:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240224	59240419	.	+	.	source_transcript=ENST00000711274.1;source_transcript_name=WASH6P-219;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711274.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711274.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001942;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001942;transcript_name=HG003_chrY_T0001942;gene_name=WASH6P;ID=exon:HG003_chrY_T0001942:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59240042	59242878	1000	+	.	source_transcript=ENST00000711276.1;source_transcript_name=WASH6P-221;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711276.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711276.1;transcript_score=256.5;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711276.1,ENST00000711276.1;transcript_id=HG003_chrY_T0001943;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001943;gene_name=WASH6P;ID=HG003_chrY_T0001943;Name=WASH6P
HG003_chrY	CAT	exon	59240042	59240046	.	+	.	source_transcript=ENST00000711276.1;source_transcript_name=WASH6P-221;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711276.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711276.1;transcript_score=256.5;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711276.1,ENST00000711276.1;transcript_id=HG003_chrY_T0001943;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001943;transcript_name=HG003_chrY_T0001943;gene_name=WASH6P;ID=exon:HG003_chrY_T0001943:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240047	59240223	.	+	.	source_transcript=ENST00000711276.1;source_transcript_name=WASH6P-221;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711276.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711276.1;transcript_score=256.5;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711276.1,ENST00000711276.1;transcript_id=HG003_chrY_T0001943;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001943;transcript_name=HG003_chrY_T0001943;gene_name=WASH6P;ID=intron:HG003_chrY_T0001943:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240224	59240421	.	+	.	source_transcript=ENST00000711276.1;source_transcript_name=WASH6P-221;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711276.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711276.1;transcript_score=256.5;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711276.1,ENST00000711276.1;transcript_id=HG003_chrY_T0001943;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001943;transcript_name=HG003_chrY_T0001943;gene_name=WASH6P;ID=exon:HG003_chrY_T0001943:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240422	59240513	.	+	.	source_transcript=ENST00000711276.1;source_transcript_name=WASH6P-221;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711276.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711276.1;transcript_score=256.5;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711276.1,ENST00000711276.1;transcript_id=HG003_chrY_T0001943;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001943;transcript_name=HG003_chrY_T0001943;gene_name=WASH6P;ID=intron:HG003_chrY_T0001943:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240514	59240672	.	+	.	source_transcript=ENST00000711276.1;source_transcript_name=WASH6P-221;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711276.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711276.1;transcript_score=256.5;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711276.1,ENST00000711276.1;transcript_id=HG003_chrY_T0001943;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001943;transcript_name=HG003_chrY_T0001943;gene_name=WASH6P;ID=exon:HG003_chrY_T0001943:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240673	59241331	.	+	.	source_transcript=ENST00000711276.1;source_transcript_name=WASH6P-221;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711276.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711276.1;transcript_score=256.5;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711276.1,ENST00000711276.1;transcript_id=HG003_chrY_T0001943;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001943;transcript_name=HG003_chrY_T0001943;gene_name=WASH6P;ID=intron:HG003_chrY_T0001943:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59241332	59241484	.	+	.	source_transcript=ENST00000711276.1;source_transcript_name=WASH6P-221;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711276.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711276.1;transcript_score=256.5;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711276.1,ENST00000711276.1;transcript_id=HG003_chrY_T0001943;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001943;transcript_name=HG003_chrY_T0001943;gene_name=WASH6P;ID=exon:HG003_chrY_T0001943:3;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59241485	59242243	.	+	.	source_transcript=ENST00000711276.1;source_transcript_name=WASH6P-221;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711276.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711276.1;transcript_score=256.5;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711276.1,ENST00000711276.1;transcript_id=HG003_chrY_T0001943;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001943;transcript_name=HG003_chrY_T0001943;gene_name=WASH6P;ID=intron:HG003_chrY_T0001943:3;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59242244	59242312	.	+	.	source_transcript=ENST00000711276.1;source_transcript_name=WASH6P-221;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711276.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711276.1;transcript_score=256.5;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711276.1,ENST00000711276.1;transcript_id=HG003_chrY_T0001943;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001943;transcript_name=HG003_chrY_T0001943;gene_name=WASH6P;ID=exon:HG003_chrY_T0001943:4;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59242313	59242452	.	+	.	source_transcript=ENST00000711276.1;source_transcript_name=WASH6P-221;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711276.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711276.1;transcript_score=256.5;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711276.1,ENST00000711276.1;transcript_id=HG003_chrY_T0001943;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001943;transcript_name=HG003_chrY_T0001943;gene_name=WASH6P;ID=intron:HG003_chrY_T0001943:4;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59242453	59242878	.	+	.	source_transcript=ENST00000711276.1;source_transcript_name=WASH6P-221;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711276.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711276.1;transcript_score=256.5;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711276.1,ENST00000711276.1;transcript_id=HG003_chrY_T0001943;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001943;transcript_name=HG003_chrY_T0001943;gene_name=WASH6P;ID=exon:HG003_chrY_T0001943:5;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59240042	59242878	1000	+	.	source_transcript=ENST00000711277.1;source_transcript_name=WASH6P-222;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711277.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711277.1;transcript_score=275.772;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711277.1,ENST00000711277.1;transcript_id=HG003_chrY_T0001944;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001944;gene_name=WASH6P;ID=HG003_chrY_T0001944;Name=WASH6P
HG003_chrY	CAT	exon	59240042	59240046	.	+	.	source_transcript=ENST00000711277.1;source_transcript_name=WASH6P-222;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711277.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711277.1;transcript_score=275.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711277.1,ENST00000711277.1;transcript_id=HG003_chrY_T0001944;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001944;transcript_name=HG003_chrY_T0001944;gene_name=WASH6P;ID=exon:HG003_chrY_T0001944:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240047	59240223	.	+	.	source_transcript=ENST00000711277.1;source_transcript_name=WASH6P-222;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711277.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711277.1;transcript_score=275.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711277.1,ENST00000711277.1;transcript_id=HG003_chrY_T0001944;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001944;transcript_name=HG003_chrY_T0001944;gene_name=WASH6P;ID=intron:HG003_chrY_T0001944:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240224	59240421	.	+	.	source_transcript=ENST00000711277.1;source_transcript_name=WASH6P-222;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711277.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711277.1;transcript_score=275.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711277.1,ENST00000711277.1;transcript_id=HG003_chrY_T0001944;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001944;transcript_name=HG003_chrY_T0001944;gene_name=WASH6P;ID=exon:HG003_chrY_T0001944:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240422	59240513	.	+	.	source_transcript=ENST00000711277.1;source_transcript_name=WASH6P-222;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711277.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711277.1;transcript_score=275.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711277.1,ENST00000711277.1;transcript_id=HG003_chrY_T0001944;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001944;transcript_name=HG003_chrY_T0001944;gene_name=WASH6P;ID=intron:HG003_chrY_T0001944:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240514	59242312	.	+	.	source_transcript=ENST00000711277.1;source_transcript_name=WASH6P-222;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711277.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711277.1;transcript_score=275.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711277.1,ENST00000711277.1;transcript_id=HG003_chrY_T0001944;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001944;transcript_name=HG003_chrY_T0001944;gene_name=WASH6P;ID=exon:HG003_chrY_T0001944:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59242313	59242452	.	+	.	source_transcript=ENST00000711277.1;source_transcript_name=WASH6P-222;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711277.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711277.1;transcript_score=275.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711277.1,ENST00000711277.1;transcript_id=HG003_chrY_T0001944;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001944;transcript_name=HG003_chrY_T0001944;gene_name=WASH6P;ID=intron:HG003_chrY_T0001944:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59242453	59242878	.	+	.	source_transcript=ENST00000711277.1;source_transcript_name=WASH6P-222;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711277.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711277.1;transcript_score=275.772;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711277.1,ENST00000711277.1;transcript_id=HG003_chrY_T0001944;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001944;transcript_name=HG003_chrY_T0001944;gene_name=WASH6P;ID=exon:HG003_chrY_T0001944:3;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59240042	59242922	1000	+	.	source_transcript=ENST00000711278.1;source_transcript_name=WASH6P-223;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711278.1;transcript_score=257.374;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711278.1,ENST00000711278.1;transcript_id=HG003_chrY_T0001945;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001945;gene_name=WASH6P;ID=HG003_chrY_T0001945;Name=WASH6P
HG003_chrY	CAT	exon	59240042	59240046	.	+	.	source_transcript=ENST00000711278.1;source_transcript_name=WASH6P-223;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711278.1;transcript_score=257.374;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711278.1,ENST00000711278.1;transcript_id=HG003_chrY_T0001945;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001945;transcript_name=HG003_chrY_T0001945;gene_name=WASH6P;ID=exon:HG003_chrY_T0001945:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240047	59240223	.	+	.	source_transcript=ENST00000711278.1;source_transcript_name=WASH6P-223;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711278.1;transcript_score=257.374;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711278.1,ENST00000711278.1;transcript_id=HG003_chrY_T0001945;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001945;transcript_name=HG003_chrY_T0001945;gene_name=WASH6P;ID=intron:HG003_chrY_T0001945:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240224	59240425	.	+	.	source_transcript=ENST00000711278.1;source_transcript_name=WASH6P-223;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711278.1;transcript_score=257.374;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711278.1,ENST00000711278.1;transcript_id=HG003_chrY_T0001945;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001945;transcript_name=HG003_chrY_T0001945;gene_name=WASH6P;ID=exon:HG003_chrY_T0001945:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240426	59240513	.	+	.	source_transcript=ENST00000711278.1;source_transcript_name=WASH6P-223;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711278.1;transcript_score=257.374;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711278.1,ENST00000711278.1;transcript_id=HG003_chrY_T0001945;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001945;transcript_name=HG003_chrY_T0001945;gene_name=WASH6P;ID=intron:HG003_chrY_T0001945:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240514	59240672	.	+	.	source_transcript=ENST00000711278.1;source_transcript_name=WASH6P-223;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711278.1;transcript_score=257.374;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711278.1,ENST00000711278.1;transcript_id=HG003_chrY_T0001945;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001945;transcript_name=HG003_chrY_T0001945;gene_name=WASH6P;ID=exon:HG003_chrY_T0001945:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240673	59241331	.	+	.	source_transcript=ENST00000711278.1;source_transcript_name=WASH6P-223;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711278.1;transcript_score=257.374;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711278.1,ENST00000711278.1;transcript_id=HG003_chrY_T0001945;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001945;transcript_name=HG003_chrY_T0001945;gene_name=WASH6P;ID=intron:HG003_chrY_T0001945:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59241332	59241484	.	+	.	source_transcript=ENST00000711278.1;source_transcript_name=WASH6P-223;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711278.1;transcript_score=257.374;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711278.1,ENST00000711278.1;transcript_id=HG003_chrY_T0001945;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001945;transcript_name=HG003_chrY_T0001945;gene_name=WASH6P;ID=exon:HG003_chrY_T0001945:3;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59241485	59242243	.	+	.	source_transcript=ENST00000711278.1;source_transcript_name=WASH6P-223;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711278.1;transcript_score=257.374;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711278.1,ENST00000711278.1;transcript_id=HG003_chrY_T0001945;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001945;transcript_name=HG003_chrY_T0001945;gene_name=WASH6P;ID=intron:HG003_chrY_T0001945:3;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59242244	59242312	.	+	.	source_transcript=ENST00000711278.1;source_transcript_name=WASH6P-223;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711278.1;transcript_score=257.374;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711278.1,ENST00000711278.1;transcript_id=HG003_chrY_T0001945;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001945;transcript_name=HG003_chrY_T0001945;gene_name=WASH6P;ID=exon:HG003_chrY_T0001945:4;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59242313	59242452	.	+	.	source_transcript=ENST00000711278.1;source_transcript_name=WASH6P-223;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711278.1;transcript_score=257.374;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711278.1,ENST00000711278.1;transcript_id=HG003_chrY_T0001945;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001945;transcript_name=HG003_chrY_T0001945;gene_name=WASH6P;ID=intron:HG003_chrY_T0001945:4;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59242453	59242922	.	+	.	source_transcript=ENST00000711278.1;source_transcript_name=WASH6P-223;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711278.1;transcript_score=257.374;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711278.1,ENST00000711278.1;transcript_id=HG003_chrY_T0001945;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001945;transcript_name=HG003_chrY_T0001945;gene_name=WASH6P;ID=exon:HG003_chrY_T0001945:5;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59240042	59242875	1000	+	.	source_transcript=ENST00000711281.1;source_transcript_name=WASH6P-226;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711281.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711281.1;transcript_score=285.645;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711281.1,ENST00000711281.1;transcript_id=HG003_chrY_T0001946;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001946;gene_name=WASH6P;ID=HG003_chrY_T0001946;Name=WASH6P
HG003_chrY	CAT	exon	59240042	59240046	.	+	.	source_transcript=ENST00000711281.1;source_transcript_name=WASH6P-226;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711281.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711281.1;transcript_score=285.645;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711281.1,ENST00000711281.1;transcript_id=HG003_chrY_T0001946;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001946;transcript_name=HG003_chrY_T0001946;gene_name=WASH6P;ID=exon:HG003_chrY_T0001946:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240047	59240223	.	+	.	source_transcript=ENST00000711281.1;source_transcript_name=WASH6P-226;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711281.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711281.1;transcript_score=285.645;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711281.1,ENST00000711281.1;transcript_id=HG003_chrY_T0001946;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001946;transcript_name=HG003_chrY_T0001946;gene_name=WASH6P;ID=intron:HG003_chrY_T0001946:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240224	59240421	.	+	.	source_transcript=ENST00000711281.1;source_transcript_name=WASH6P-226;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711281.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711281.1;transcript_score=285.645;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711281.1,ENST00000711281.1;transcript_id=HG003_chrY_T0001946;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001946;transcript_name=HG003_chrY_T0001946;gene_name=WASH6P;ID=exon:HG003_chrY_T0001946:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240422	59240513	.	+	.	source_transcript=ENST00000711281.1;source_transcript_name=WASH6P-226;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711281.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711281.1;transcript_score=285.645;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711281.1,ENST00000711281.1;transcript_id=HG003_chrY_T0001946;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001946;transcript_name=HG003_chrY_T0001946;gene_name=WASH6P;ID=intron:HG003_chrY_T0001946:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240514	59242875	.	+	.	source_transcript=ENST00000711281.1;source_transcript_name=WASH6P-226;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711281.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711281.1;transcript_score=285.645;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711281.1,ENST00000711281.1;transcript_id=HG003_chrY_T0001946;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001946;transcript_name=HG003_chrY_T0001946;gene_name=WASH6P;ID=exon:HG003_chrY_T0001946:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59240042	59240743	1000	+	.	source_transcript=ENST00000711282.1;source_transcript_name=WASH6P-227;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711282.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711282.1;transcript_score=292.499;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711282.1,ENST00000711282.1;transcript_id=HG003_chrY_T0001947;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001947;gene_name=WASH6P;ID=HG003_chrY_T0001947;Name=WASH6P
HG003_chrY	CAT	exon	59240042	59240425	.	+	.	source_transcript=ENST00000711282.1;source_transcript_name=WASH6P-227;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711282.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711282.1;transcript_score=292.499;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711282.1,ENST00000711282.1;transcript_id=HG003_chrY_T0001947;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001947;transcript_name=HG003_chrY_T0001947;gene_name=WASH6P;ID=exon:HG003_chrY_T0001947:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240426	59240513	.	+	.	source_transcript=ENST00000711282.1;source_transcript_name=WASH6P-227;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711282.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711282.1;transcript_score=292.499;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711282.1,ENST00000711282.1;transcript_id=HG003_chrY_T0001947;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001947;transcript_name=HG003_chrY_T0001947;gene_name=WASH6P;ID=intron:HG003_chrY_T0001947:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240514	59240743	.	+	.	source_transcript=ENST00000711282.1;source_transcript_name=WASH6P-227;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711282.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711282.1;transcript_score=292.499;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711282.1,ENST00000711282.1;transcript_id=HG003_chrY_T0001947;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001947;transcript_name=HG003_chrY_T0001947;gene_name=WASH6P;ID=exon:HG003_chrY_T0001947:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59240042	59240601	1000	+	.	source_transcript=ENST00000711280.1;source_transcript_name=WASH6P-225;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711280.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711280.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001948;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001948;gene_name=WASH6P;ID=HG003_chrY_T0001948;Name=WASH6P
HG003_chrY	CAT	exon	59240042	59240046	.	+	.	source_transcript=ENST00000711280.1;source_transcript_name=WASH6P-225;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711280.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711280.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001948;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001948;transcript_name=HG003_chrY_T0001948;gene_name=WASH6P;ID=exon:HG003_chrY_T0001948:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240047	59240223	.	+	.	source_transcript=ENST00000711280.1;source_transcript_name=WASH6P-225;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711280.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711280.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001948;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001948;transcript_name=HG003_chrY_T0001948;gene_name=WASH6P;ID=intron:HG003_chrY_T0001948:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240224	59240421	.	+	.	source_transcript=ENST00000711280.1;source_transcript_name=WASH6P-225;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711280.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711280.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001948;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001948;transcript_name=HG003_chrY_T0001948;gene_name=WASH6P;ID=exon:HG003_chrY_T0001948:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240422	59240513	.	+	.	source_transcript=ENST00000711280.1;source_transcript_name=WASH6P-225;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711280.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711280.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001948;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001948;transcript_name=HG003_chrY_T0001948;gene_name=WASH6P;ID=intron:HG003_chrY_T0001948:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240514	59240601	.	+	.	source_transcript=ENST00000711280.1;source_transcript_name=WASH6P-225;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711280.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711280.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001948;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001948;transcript_name=HG003_chrY_T0001948;gene_name=WASH6P;ID=exon:HG003_chrY_T0001948:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59240042	59240547	1000	+	.	source_transcript=ENST00000711275.1;source_transcript_name=WASH6P-220;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711275.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711275.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001949;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001949;gene_name=WASH6P;ID=HG003_chrY_T0001949;Name=WASH6P
HG003_chrY	CAT	exon	59240042	59240046	.	+	.	source_transcript=ENST00000711275.1;source_transcript_name=WASH6P-220;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711275.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711275.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001949;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001949;transcript_name=HG003_chrY_T0001949;gene_name=WASH6P;ID=exon:HG003_chrY_T0001949:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240047	59240223	.	+	.	source_transcript=ENST00000711275.1;source_transcript_name=WASH6P-220;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711275.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711275.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001949;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001949;transcript_name=HG003_chrY_T0001949;gene_name=WASH6P;ID=intron:HG003_chrY_T0001949:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240224	59240425	.	+	.	source_transcript=ENST00000711275.1;source_transcript_name=WASH6P-220;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711275.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711275.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001949;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001949;transcript_name=HG003_chrY_T0001949;gene_name=WASH6P;ID=exon:HG003_chrY_T0001949:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240426	59240513	.	+	.	source_transcript=ENST00000711275.1;source_transcript_name=WASH6P-220;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711275.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711275.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001949;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001949;transcript_name=HG003_chrY_T0001949;gene_name=WASH6P;ID=intron:HG003_chrY_T0001949:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59240514	59240547	.	+	.	source_transcript=ENST00000711275.1;source_transcript_name=WASH6P-220;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711275.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711275.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001949;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001949;transcript_name=HG003_chrY_T0001949;gene_name=WASH6P;ID=exon:HG003_chrY_T0001949:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59240224	59240304	1000	+	.	source_transcript=ENST00000711279.1;source_transcript_name=WASH6P-224;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711279.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711279.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001950;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001950;gene_name=WASH6P;ID=HG003_chrY_T0001950;Name=WASH6P
HG003_chrY	CAT	exon	59240224	59240304	.	+	.	source_transcript=ENST00000711279.1;source_transcript_name=WASH6P-224;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711279.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711279.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;transcript_id=HG003_chrY_T0001950;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001950;transcript_name=HG003_chrY_T0001950;gene_name=WASH6P;ID=exon:HG003_chrY_T0001950:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59240579	59242878	1000	+	.	source_transcript=ENST00000711283.1;source_transcript_name=WASH6P-228;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711283.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711283.1;transcript_score=299.634;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711283.1,ENST00000711283.1;transcript_id=HG003_chrY_T0001951;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001951;gene_name=WASH6P;ID=HG003_chrY_T0001951;Name=WASH6P
HG003_chrY	CAT	exon	59240579	59240672	.	+	.	source_transcript=ENST00000711283.1;source_transcript_name=WASH6P-228;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711283.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711283.1;transcript_score=299.634;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711283.1,ENST00000711283.1;transcript_id=HG003_chrY_T0001951;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001951;transcript_name=HG003_chrY_T0001951;gene_name=WASH6P;ID=exon:HG003_chrY_T0001951:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59240673	59241331	.	+	.	source_transcript=ENST00000711283.1;source_transcript_name=WASH6P-228;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711283.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711283.1;transcript_score=299.634;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711283.1,ENST00000711283.1;transcript_id=HG003_chrY_T0001951;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001951;transcript_name=HG003_chrY_T0001951;gene_name=WASH6P;ID=intron:HG003_chrY_T0001951:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59241332	59242878	.	+	.	source_transcript=ENST00000711283.1;source_transcript_name=WASH6P-228;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711283.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711283.1;transcript_score=299.634;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711283.1,ENST00000711283.1;transcript_id=HG003_chrY_T0001951;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001951;transcript_name=HG003_chrY_T0001951;gene_name=WASH6P;ID=exon:HG003_chrY_T0001951:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59241036	59242766	1000	+	.	source_transcript=ENST00000711284.1;source_transcript_name=WASH6P-229;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711284.1;transcript_score=299.88;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711284.1,ENST00000711284.1;transcript_id=HG003_chrY_T0001952;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001952;gene_name=WASH6P;ID=HG003_chrY_T0001952;Name=WASH6P
HG003_chrY	CAT	exon	59241036	59241484	.	+	.	source_transcript=ENST00000711284.1;source_transcript_name=WASH6P-229;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711284.1;transcript_score=299.88;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711284.1,ENST00000711284.1;transcript_id=HG003_chrY_T0001952;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001952;transcript_name=HG003_chrY_T0001952;gene_name=WASH6P;ID=exon:HG003_chrY_T0001952:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59241485	59242243	.	+	.	source_transcript=ENST00000711284.1;source_transcript_name=WASH6P-229;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711284.1;transcript_score=299.88;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711284.1,ENST00000711284.1;transcript_id=HG003_chrY_T0001952;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001952;transcript_name=HG003_chrY_T0001952;gene_name=WASH6P;ID=intron:HG003_chrY_T0001952:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59242244	59242312	.	+	.	source_transcript=ENST00000711284.1;source_transcript_name=WASH6P-229;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711284.1;transcript_score=299.88;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711284.1,ENST00000711284.1;transcript_id=HG003_chrY_T0001952;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001952;transcript_name=HG003_chrY_T0001952;gene_name=WASH6P;ID=exon:HG003_chrY_T0001952:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59242313	59242452	.	+	.	source_transcript=ENST00000711284.1;source_transcript_name=WASH6P-229;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711284.1;transcript_score=299.88;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711284.1,ENST00000711284.1;transcript_id=HG003_chrY_T0001952;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001952;transcript_name=HG003_chrY_T0001952;gene_name=WASH6P;ID=intron:HG003_chrY_T0001952:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59242453	59242766	.	+	.	source_transcript=ENST00000711284.1;source_transcript_name=WASH6P-229;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=retained_intron;alignment_id=ENST00000711284.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711284.1;transcript_score=299.88;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711284.1,ENST00000711284.1;transcript_id=HG003_chrY_T0001952;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001952;transcript_name=HG003_chrY_T0001952;gene_name=WASH6P;ID=exon:HG003_chrY_T0001952:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59241283	59242766	1000	+	.	source_transcript=ENST00000711285.1;source_transcript_name=WASH6P-230;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711285.1;transcript_score=299.813;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711285.1,ENST00000711285.1;transcript_id=HG003_chrY_T0001953;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_G0000723;transcript_name=HG003_chrY_T0001953;gene_name=WASH6P;ID=HG003_chrY_T0001953;Name=WASH6P
HG003_chrY	CAT	exon	59241283	59241484	.	+	.	source_transcript=ENST00000711285.1;source_transcript_name=WASH6P-230;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711285.1;transcript_score=299.813;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711285.1,ENST00000711285.1;transcript_id=HG003_chrY_T0001953;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001953;transcript_name=HG003_chrY_T0001953;gene_name=WASH6P;ID=exon:HG003_chrY_T0001953:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59241485	59242243	.	+	.	source_transcript=ENST00000711285.1;source_transcript_name=WASH6P-230;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711285.1;transcript_score=299.813;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711285.1,ENST00000711285.1;transcript_id=HG003_chrY_T0001953;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001953;transcript_name=HG003_chrY_T0001953;gene_name=WASH6P;ID=intron:HG003_chrY_T0001953:0;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59242244	59242261	.	+	.	source_transcript=ENST00000711285.1;source_transcript_name=WASH6P-230;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711285.1;transcript_score=299.813;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711285.1,ENST00000711285.1;transcript_id=HG003_chrY_T0001953;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001953;transcript_name=HG003_chrY_T0001953;gene_name=WASH6P;ID=exon:HG003_chrY_T0001953:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59242262	59242452	.	+	.	source_transcript=ENST00000711285.1;source_transcript_name=WASH6P-230;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711285.1;transcript_score=299.813;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711285.1,ENST00000711285.1;transcript_id=HG003_chrY_T0001953;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001953;transcript_name=HG003_chrY_T0001953;gene_name=WASH6P;ID=intron:HG003_chrY_T0001953:1;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59242453	59242766	.	+	.	source_transcript=ENST00000711285.1;source_transcript_name=WASH6P-230;source_gene=ENSG00000292372.1;source_gene_biotype=protein_coding;original_gene_id=ENSG00000292372.1;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000711285.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711285.1;transcript_score=299.813;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=WASH6P;alternative_source_transcripts=ENST00000711285.1,ENST00000711285.1;transcript_id=HG003_chrY_T0001953;gene_id=HG003_chrY_G0000723;Parent=HG003_chrY_T0001953;transcript_name=HG003_chrY_T0001953;gene_name=WASH6P;ID=exon:HG003_chrY_T0001953:2;Name=WASH6P;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59242804	59246326	.	-	.	source_gene_common_name=ENSG00000310542;source_gene=ENSG00000310542.1;gene_id=HG003_chrY_G0000724;gene_biotype=lncRNA;gene_name=ENSG00000310542;gene_sources=liftoff;ID=HG003_chrY_G0000724;Name=ENSG00000310542
HG003_chrY	CAT	transcript	59242804	59242878	1000	-	.	source_transcript=ENST00000850693.1;source_transcript_name=ENST00000850693;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850693.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850693.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001954;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_G0000724;transcript_name=HG003_chrY_T0001954;gene_name=ENSG00000310542;ID=HG003_chrY_T0001954;Name=ENSG00000310542
HG003_chrY	CAT	exon	59242804	59242878	.	-	.	source_transcript=ENST00000850693.1;source_transcript_name=ENST00000850693;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850693.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850693.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001954;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001954;transcript_name=HG003_chrY_T0001954;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001954:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59242869	59246257	1000	-	.	source_transcript=ENST00000850696.1;source_transcript_name=ENST00000850696;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850696.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001955;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_G0000724;transcript_name=HG003_chrY_T0001955;gene_name=ENSG00000310542;ID=HG003_chrY_T0001955;Name=ENSG00000310542
HG003_chrY	CAT	exon	59242869	59243006	.	-	.	source_transcript=ENST00000850696.1;source_transcript_name=ENST00000850696;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850696.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001955;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001955;transcript_name=HG003_chrY_T0001955;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001955:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59243007	59243593	.	-	.	source_transcript=ENST00000850696.1;source_transcript_name=ENST00000850696;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850696.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001955;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001955;transcript_name=HG003_chrY_T0001955;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001955:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59243594	59243817	.	-	.	source_transcript=ENST00000850696.1;source_transcript_name=ENST00000850696;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850696.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001955;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001955;transcript_name=HG003_chrY_T0001955;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001955:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59243818	59244548	.	-	.	source_transcript=ENST00000850696.1;source_transcript_name=ENST00000850696;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850696.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001955;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001955;transcript_name=HG003_chrY_T0001955;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001955:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59244549	59244657	.	-	.	source_transcript=ENST00000850696.1;source_transcript_name=ENST00000850696;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850696.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001955;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001955;transcript_name=HG003_chrY_T0001955;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001955:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59244658	59245042	.	-	.	source_transcript=ENST00000850696.1;source_transcript_name=ENST00000850696;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850696.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001955;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001955;transcript_name=HG003_chrY_T0001955;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001955:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59245043	59245260	.	-	.	source_transcript=ENST00000850696.1;source_transcript_name=ENST00000850696;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850696.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001955;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001955;transcript_name=HG003_chrY_T0001955;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001955:3;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59245261	59246058	.	-	.	source_transcript=ENST00000850696.1;source_transcript_name=ENST00000850696;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850696.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001955;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001955;transcript_name=HG003_chrY_T0001955;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001955:3;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59246059	59246257	.	-	.	source_transcript=ENST00000850696.1;source_transcript_name=ENST00000850696;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850696.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001955;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001955;transcript_name=HG003_chrY_T0001955;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001955:4;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59242872	59246145	1000	-	.	source_transcript=ENST00000850699.1;source_transcript_name=ENST00000850699;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850699.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001956;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_G0000724;transcript_name=HG003_chrY_T0001956;gene_name=ENSG00000310542;ID=HG003_chrY_T0001956;Name=ENSG00000310542
HG003_chrY	CAT	exon	59242872	59243787	.	-	.	source_transcript=ENST00000850699.1;source_transcript_name=ENST00000850699;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850699.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001956;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001956;transcript_name=HG003_chrY_T0001956;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001956:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59243788	59244572	.	-	.	source_transcript=ENST00000850699.1;source_transcript_name=ENST00000850699;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850699.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001956;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001956;transcript_name=HG003_chrY_T0001956;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001956:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59244573	59244675	.	-	.	source_transcript=ENST00000850699.1;source_transcript_name=ENST00000850699;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850699.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001956;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001956;transcript_name=HG003_chrY_T0001956;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001956:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59244676	59245042	.	-	.	source_transcript=ENST00000850699.1;source_transcript_name=ENST00000850699;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850699.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001956;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001956;transcript_name=HG003_chrY_T0001956;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001956:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59245043	59245260	.	-	.	source_transcript=ENST00000850699.1;source_transcript_name=ENST00000850699;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850699.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001956;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001956;transcript_name=HG003_chrY_T0001956;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001956:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59245261	59246058	.	-	.	source_transcript=ENST00000850699.1;source_transcript_name=ENST00000850699;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850699.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001956;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001956;transcript_name=HG003_chrY_T0001956;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001956:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59246059	59246145	.	-	.	source_transcript=ENST00000850699.1;source_transcript_name=ENST00000850699;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850699.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850699.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001956;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001956;transcript_name=HG003_chrY_T0001956;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001956:3;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59242873	59246286	1000	-	.	source_transcript=ENST00000850695.1;source_transcript_name=ENST00000850695;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850695.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850695.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001957;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_G0000724;transcript_name=HG003_chrY_T0001957;gene_name=ENSG00000310542;ID=HG003_chrY_T0001957;Name=ENSG00000310542
HG003_chrY	CAT	exon	59242873	59243006	.	-	.	source_transcript=ENST00000850695.1;source_transcript_name=ENST00000850695;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850695.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850695.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001957;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001957;transcript_name=HG003_chrY_T0001957;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001957:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59243007	59243593	.	-	.	source_transcript=ENST00000850695.1;source_transcript_name=ENST00000850695;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850695.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850695.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001957;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001957;transcript_name=HG003_chrY_T0001957;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001957:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59243594	59243817	.	-	.	source_transcript=ENST00000850695.1;source_transcript_name=ENST00000850695;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850695.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850695.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001957;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001957;transcript_name=HG003_chrY_T0001957;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001957:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59243818	59244572	.	-	.	source_transcript=ENST00000850695.1;source_transcript_name=ENST00000850695;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850695.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850695.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001957;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001957;transcript_name=HG003_chrY_T0001957;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001957:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59244573	59244657	.	-	.	source_transcript=ENST00000850695.1;source_transcript_name=ENST00000850695;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850695.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850695.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001957;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001957;transcript_name=HG003_chrY_T0001957;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001957:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59244658	59245042	.	-	.	source_transcript=ENST00000850695.1;source_transcript_name=ENST00000850695;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850695.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850695.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001957;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001957;transcript_name=HG003_chrY_T0001957;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001957:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59245043	59245260	.	-	.	source_transcript=ENST00000850695.1;source_transcript_name=ENST00000850695;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850695.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850695.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001957;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001957;transcript_name=HG003_chrY_T0001957;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001957:3;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59245261	59246249	.	-	.	source_transcript=ENST00000850695.1;source_transcript_name=ENST00000850695;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850695.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850695.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001957;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001957;transcript_name=HG003_chrY_T0001957;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001957:3;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59246250	59246286	.	-	.	source_transcript=ENST00000850695.1;source_transcript_name=ENST00000850695;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850695.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850695.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001957;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001957;transcript_name=HG003_chrY_T0001957;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001957:4;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59242873	59246253	1000	-	.	source_transcript=ENST00000850697.1;source_transcript_name=ENST00000850697;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850697.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001958;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_G0000724;transcript_name=HG003_chrY_T0001958;gene_name=ENSG00000310542;ID=HG003_chrY_T0001958;Name=ENSG00000310542
HG003_chrY	CAT	exon	59242873	59244045	.	-	.	source_transcript=ENST00000850697.1;source_transcript_name=ENST00000850697;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001958;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001958;transcript_name=HG003_chrY_T0001958;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001958:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59244046	59244572	.	-	.	source_transcript=ENST00000850697.1;source_transcript_name=ENST00000850697;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001958;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001958;transcript_name=HG003_chrY_T0001958;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001958:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59244573	59244657	.	-	.	source_transcript=ENST00000850697.1;source_transcript_name=ENST00000850697;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001958;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001958;transcript_name=HG003_chrY_T0001958;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001958:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59244658	59245042	.	-	.	source_transcript=ENST00000850697.1;source_transcript_name=ENST00000850697;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001958;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001958;transcript_name=HG003_chrY_T0001958;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001958:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59245043	59245260	.	-	.	source_transcript=ENST00000850697.1;source_transcript_name=ENST00000850697;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001958;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001958;transcript_name=HG003_chrY_T0001958;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001958:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59245261	59246058	.	-	.	source_transcript=ENST00000850697.1;source_transcript_name=ENST00000850697;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001958;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001958;transcript_name=HG003_chrY_T0001958;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001958:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59246059	59246253	.	-	.	source_transcript=ENST00000850697.1;source_transcript_name=ENST00000850697;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850697.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850697.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001958;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001958;transcript_name=HG003_chrY_T0001958;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001958:3;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59242875	59246326	1000	-	.	source_transcript=ENST00000850694.1;source_transcript_name=ENST00000850694;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850694.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850694.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001959;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_G0000724;transcript_name=HG003_chrY_T0001959;gene_name=ENSG00000310542;ID=HG003_chrY_T0001959;Name=ENSG00000310542
HG003_chrY	CAT	exon	59242875	59243817	.	-	.	source_transcript=ENST00000850694.1;source_transcript_name=ENST00000850694;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850694.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850694.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001959;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001959;transcript_name=HG003_chrY_T0001959;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001959:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59243818	59244572	.	-	.	source_transcript=ENST00000850694.1;source_transcript_name=ENST00000850694;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850694.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850694.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001959;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001959;transcript_name=HG003_chrY_T0001959;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001959:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59244573	59244657	.	-	.	source_transcript=ENST00000850694.1;source_transcript_name=ENST00000850694;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850694.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850694.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001959;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001959;transcript_name=HG003_chrY_T0001959;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001959:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59244658	59245042	.	-	.	source_transcript=ENST00000850694.1;source_transcript_name=ENST00000850694;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850694.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850694.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001959;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001959;transcript_name=HG003_chrY_T0001959;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001959:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59245043	59245260	.	-	.	source_transcript=ENST00000850694.1;source_transcript_name=ENST00000850694;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850694.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850694.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001959;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001959;transcript_name=HG003_chrY_T0001959;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001959:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59245261	59246249	.	-	.	source_transcript=ENST00000850694.1;source_transcript_name=ENST00000850694;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850694.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850694.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001959;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001959;transcript_name=HG003_chrY_T0001959;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001959:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59246250	59246326	.	-	.	source_transcript=ENST00000850694.1;source_transcript_name=ENST00000850694;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850694.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850694.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001959;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001959;transcript_name=HG003_chrY_T0001959;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001959:3;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59242876	59246166	1000	-	.	source_transcript=ENST00000850698.1;source_transcript_name=ENST00000850698;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850698.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850698.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001960;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_G0000724;transcript_name=HG003_chrY_T0001960;gene_name=ENSG00000310542;ID=HG003_chrY_T0001960;Name=ENSG00000310542
HG003_chrY	CAT	exon	59242876	59243705	.	-	.	source_transcript=ENST00000850698.1;source_transcript_name=ENST00000850698;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850698.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850698.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001960;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001960;transcript_name=HG003_chrY_T0001960;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001960:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59243706	59244572	.	-	.	source_transcript=ENST00000850698.1;source_transcript_name=ENST00000850698;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850698.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850698.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001960;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001960;transcript_name=HG003_chrY_T0001960;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001960:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59244573	59244657	.	-	.	source_transcript=ENST00000850698.1;source_transcript_name=ENST00000850698;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850698.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850698.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001960;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001960;transcript_name=HG003_chrY_T0001960;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001960:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59244658	59245042	.	-	.	source_transcript=ENST00000850698.1;source_transcript_name=ENST00000850698;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850698.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850698.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001960;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001960;transcript_name=HG003_chrY_T0001960;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001960:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59245043	59245260	.	-	.	source_transcript=ENST00000850698.1;source_transcript_name=ENST00000850698;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850698.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850698.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001960;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001960;transcript_name=HG003_chrY_T0001960;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001960:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59245261	59246058	.	-	.	source_transcript=ENST00000850698.1;source_transcript_name=ENST00000850698;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850698.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850698.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001960;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001960;transcript_name=HG003_chrY_T0001960;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001960:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59246059	59246166	.	-	.	source_transcript=ENST00000850698.1;source_transcript_name=ENST00000850698;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850698.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850698.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001960;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001960;transcript_name=HG003_chrY_T0001960;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001960:3;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59243615	59246280	1000	-	.	source_transcript=ENST00000850700.1;source_transcript_name=ENST00000850700;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850700.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001962;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_G0000724;transcript_name=HG003_chrY_T0001962;gene_name=ENSG00000310542;ID=HG003_chrY_T0001962;Name=ENSG00000310542
HG003_chrY	CAT	exon	59243615	59243817	.	-	.	source_transcript=ENST00000850700.1;source_transcript_name=ENST00000850700;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850700.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001962;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001962;transcript_name=HG003_chrY_T0001962;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001962:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59243818	59244572	.	-	.	source_transcript=ENST00000850700.1;source_transcript_name=ENST00000850700;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850700.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001962;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001962;transcript_name=HG003_chrY_T0001962;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001962:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59244573	59244657	.	-	.	source_transcript=ENST00000850700.1;source_transcript_name=ENST00000850700;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850700.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001962;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001962;transcript_name=HG003_chrY_T0001962;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001962:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59244658	59245042	.	-	.	source_transcript=ENST00000850700.1;source_transcript_name=ENST00000850700;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850700.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001962;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001962;transcript_name=HG003_chrY_T0001962;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001962:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59245043	59245260	.	-	.	source_transcript=ENST00000850700.1;source_transcript_name=ENST00000850700;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850700.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001962;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001962;transcript_name=HG003_chrY_T0001962;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001962:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59245261	59246058	.	-	.	source_transcript=ENST00000850700.1;source_transcript_name=ENST00000850700;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850700.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001962;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001962;transcript_name=HG003_chrY_T0001962;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001962:2;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59246059	59246280	.	-	.	source_transcript=ENST00000850700.1;source_transcript_name=ENST00000850700;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850700.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850700.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001962;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001962;transcript_name=HG003_chrY_T0001962;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001962:3;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	transcript	59244599	59245423	1000	-	.	source_transcript=ENST00000850701.1;source_transcript_name=ENST00000850701;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850701.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850701.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001963;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_G0000724;transcript_name=HG003_chrY_T0001963;gene_name=ENSG00000310542;ID=HG003_chrY_T0001963;Name=ENSG00000310542
HG003_chrY	CAT	exon	59244599	59244657	.	-	.	source_transcript=ENST00000850701.1;source_transcript_name=ENST00000850701;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850701.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850701.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001963;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001963;transcript_name=HG003_chrY_T0001963;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001963:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59244658	59245042	.	-	.	source_transcript=ENST00000850701.1;source_transcript_name=ENST00000850701;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850701.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850701.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001963;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001963;transcript_name=HG003_chrY_T0001963;gene_name=ENSG00000310542;ID=intron:HG003_chrY_T0001963:0;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59245043	59245423	.	-	.	source_transcript=ENST00000850701.1;source_transcript_name=ENST00000850701;source_gene=ENSG00000310542.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310542.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000850701.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000850701.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310542;transcript_id=HG003_chrY_T0001963;gene_id=HG003_chrY_G0000724;Parent=HG003_chrY_T0001963;transcript_name=HG003_chrY_T0001963;gene_name=ENSG00000310542;ID=exon:HG003_chrY_T0001963:1;Name=ENSG00000310542;rna_support=False;reference_support=False
HG003_chrY	CAT	gene	59242876	59245090	.	-	.	source_gene_common_name=DDX11L16;source_gene=ENSG00000292371.1;gene_id=HG003_chrY_G0000725;gene_biotype=unprocessed_pseudogene;gene_name=DDX11L16;gene_sources=liftoff;ID=HG003_chrY_G0000725;Name=DDX11L16
HG003_chrY	CAT	transcript	59242876	59245090	1000	-	.	source_transcript=ENST00000711270.1;source_transcript_name=DDX11L16-286;source_gene=ENSG00000292371.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292371.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711270.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711270.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX11L16;transcript_id=HG003_chrY_T0001961;gene_id=HG003_chrY_G0000725;Parent=HG003_chrY_G0000725;transcript_name=HG003_chrY_T0001961;gene_name=DDX11L16;ID=HG003_chrY_T0001961;Name=DDX11L16
HG003_chrY	CAT	exon	59242876	59243817	.	-	.	source_transcript=ENST00000711270.1;source_transcript_name=DDX11L16-286;source_gene=ENSG00000292371.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292371.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711270.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711270.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX11L16;transcript_id=HG003_chrY_T0001961;gene_id=HG003_chrY_G0000725;Parent=HG003_chrY_T0001961;transcript_name=HG003_chrY_T0001961;gene_name=DDX11L16;ID=exon:HG003_chrY_T0001961:0;Name=DDX11L16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59243818	59243895	.	-	.	source_transcript=ENST00000711270.1;source_transcript_name=DDX11L16-286;source_gene=ENSG00000292371.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292371.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711270.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711270.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX11L16;transcript_id=HG003_chrY_T0001961;gene_id=HG003_chrY_G0000725;Parent=HG003_chrY_T0001961;transcript_name=HG003_chrY_T0001961;gene_name=DDX11L16;ID=intron:HG003_chrY_T0001961:0;Name=DDX11L16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59243896	59244049	.	-	.	source_transcript=ENST00000711270.1;source_transcript_name=DDX11L16-286;source_gene=ENSG00000292371.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292371.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711270.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711270.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX11L16;transcript_id=HG003_chrY_T0001961;gene_id=HG003_chrY_G0000725;Parent=HG003_chrY_T0001961;transcript_name=HG003_chrY_T0001961;gene_name=DDX11L16;ID=exon:HG003_chrY_T0001961:1;Name=DDX11L16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59244050	59244217	.	-	.	source_transcript=ENST00000711270.1;source_transcript_name=DDX11L16-286;source_gene=ENSG00000292371.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292371.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711270.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711270.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX11L16;transcript_id=HG003_chrY_T0001961;gene_id=HG003_chrY_G0000725;Parent=HG003_chrY_T0001961;transcript_name=HG003_chrY_T0001961;gene_name=DDX11L16;ID=intron:HG003_chrY_T0001961:1;Name=DDX11L16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59244218	59244295	.	-	.	source_transcript=ENST00000711270.1;source_transcript_name=DDX11L16-286;source_gene=ENSG00000292371.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292371.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711270.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711270.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX11L16;transcript_id=HG003_chrY_T0001961;gene_id=HG003_chrY_G0000725;Parent=HG003_chrY_T0001961;transcript_name=HG003_chrY_T0001961;gene_name=DDX11L16;ID=exon:HG003_chrY_T0001961:2;Name=DDX11L16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59244296	59244572	.	-	.	source_transcript=ENST00000711270.1;source_transcript_name=DDX11L16-286;source_gene=ENSG00000292371.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292371.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711270.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711270.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX11L16;transcript_id=HG003_chrY_T0001961;gene_id=HG003_chrY_G0000725;Parent=HG003_chrY_T0001961;transcript_name=HG003_chrY_T0001961;gene_name=DDX11L16;ID=intron:HG003_chrY_T0001961:2;Name=DDX11L16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59244573	59244657	.	-	.	source_transcript=ENST00000711270.1;source_transcript_name=DDX11L16-286;source_gene=ENSG00000292371.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292371.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711270.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711270.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX11L16;transcript_id=HG003_chrY_T0001961;gene_id=HG003_chrY_G0000725;Parent=HG003_chrY_T0001961;transcript_name=HG003_chrY_T0001961;gene_name=DDX11L16;ID=exon:HG003_chrY_T0001961:3;Name=DDX11L16;rna_support=False;reference_support=False
HG003_chrY	CAT	intron	59244658	59245042	.	-	.	source_transcript=ENST00000711270.1;source_transcript_name=DDX11L16-286;source_gene=ENSG00000292371.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292371.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711270.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711270.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX11L16;transcript_id=HG003_chrY_T0001961;gene_id=HG003_chrY_G0000725;Parent=HG003_chrY_T0001961;transcript_name=HG003_chrY_T0001961;gene_name=DDX11L16;ID=intron:HG003_chrY_T0001961:3;Name=DDX11L16;rna_support=False;reference_support=False
HG003_chrY	CAT	exon	59245043	59245090	.	-	.	source_transcript=ENST00000711270.1;source_transcript_name=DDX11L16-286;source_gene=ENSG00000292371.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000292371.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000711270.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000711270.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DDX11L16;transcript_id=HG003_chrY_T0001961;gene_id=HG003_chrY_G0000725;Parent=HG003_chrY_T0001961;transcript_name=HG003_chrY_T0001961;gene_name=DDX11L16;ID=exon:HG003_chrY_T0001961:4;Name=DDX11L16;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	7429	21897	.	-	.	source_gene_common_name=RBMY1J;source_gene=ENSG00000226941.9;gene_id=HG003_chrY_G0000726;gene_biotype=protein_coding;gene_name=RBMY1J;gene_sources=liftoff;ID=HG003_chrY_G0000726;Name=RBMY1J
HG003_chrY_random0000132	CAT	transcript	7429	21897	100	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_G0000726;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=HG003_chrY_T0001964;Name=RBMY1J
HG003_chrY_random0000132	CAT	exon	7429	8005	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001964:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	7707	8005	.	-	2	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001964:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	stop_codon	7707	7709	.	-	0	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=stop_codon:HG003_chrY_T0001964;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8006	8416	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001964:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8417	8505	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001964:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	8417	8505	.	-	1	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001964:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8506	8591	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001964:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8592	8702	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001964:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	8592	8702	.	-	1	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001964:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8703	9625	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001964:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	9626	9736	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001964:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	9626	9736	.	-	1	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001964:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	9737	10170	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001964:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10171	10281	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001964:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10171	10281	.	-	1	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001964:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10282	10721	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001964:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10722	10832	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001964:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	10722	10832	.	-	1	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001964:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10833	11787	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001964:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	11788	11902	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001964:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	11788	11902	.	-	2	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001964:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	11903	13912	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001964:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	13913	14065	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001964:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	13913	14065	.	-	2	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001964:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	14066	15980	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001964:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	15981	16158	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001964:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	15981	16158	.	-	0	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001964:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	16159	19181	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001964:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19182	19285	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001964:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19182	19285	.	-	2	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001964:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19286	19749	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001964:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19750	19862	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001964:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	19750	19858	.	-	0	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001964:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	start_codon	19856	19858	.	-	0	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=start_codon:HG003_chrY_T0001964;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19863	21723	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001964:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	21724	21897	.	-	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;transcript_id=HG003_chrY_T0001964;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001964;transcript_name=HG003_chrY_T0001964;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001964:11;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	transcript	7429	21846	1000	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_G0000726;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=HG003_chrY_T0001965;Name=RBMY1J
HG003_chrY_random0000132	CAT	exon	7429	8005	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001965:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8006	8416	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001965:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8417	8505	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001965:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8506	8591	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001965:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	8592	8702	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001965:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	8703	9625	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001965:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	9626	9736	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001965:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	9737	10170	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001965:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10171	10281	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001965:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10282	10721	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001965:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	10722	10832	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001965:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	10833	11787	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001965:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	11788	11902	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001965:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	11903	13912	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001965:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	13913	14065	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001965:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	14066	19181	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001965:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19182	19285	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001965:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19286	19749	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001965:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	19750	19862	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001965:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	19863	21723	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001965:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	21724	21846	.	-	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000481858.1;transcript_id=HG003_chrY_T0001965;gene_id=HG003_chrY_G0000726;Parent=HG003_chrY_T0001965;transcript_name=HG003_chrY_T0001965;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001965:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	22739	24910	.	+	.	source_gene_common_name=TSPY23P;source_gene=ENSG00000229159.1;alternative_source_transcripts=ENST00000440136.1;gene_id=HG003_chrY_G0000727;gene_biotype=unprocessed_pseudogene;gene_name=TSPY23P;gene_sources=liftoff;ID=HG003_chrY_G0000727;Name=TSPY23P
HG003_chrY_random0000132	CAT	transcript	22739	24910	1000	+	.	source_transcript=ENST00000440136.1;source_transcript_name=TSPY23P-201;source_gene=ENSG00000229159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440136.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY23P;alternative_source_transcripts=ENST00000440136.1;transcript_id=HG003_chrY_T0001966;gene_id=HG003_chrY_G0000727;Parent=HG003_chrY_G0000727;transcript_name=HG003_chrY_T0001966;gene_name=TSPY23P;ID=HG003_chrY_T0001966;Name=TSPY23P
HG003_chrY_random0000132	CAT	exon	22739	23132	.	+	.	source_transcript=ENST00000440136.1;source_transcript_name=TSPY23P-201;source_gene=ENSG00000229159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY23P;alternative_source_transcripts=ENST00000440136.1;transcript_id=HG003_chrY_T0001966;gene_id=HG003_chrY_G0000727;Parent=HG003_chrY_T0001966;transcript_name=HG003_chrY_T0001966;gene_name=TSPY23P;ID=exon:HG003_chrY_T0001966:0;Name=TSPY23P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	23133	24123	.	+	.	source_transcript=ENST00000440136.1;source_transcript_name=TSPY23P-201;source_gene=ENSG00000229159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY23P;alternative_source_transcripts=ENST00000440136.1;transcript_id=HG003_chrY_T0001966;gene_id=HG003_chrY_G0000727;Parent=HG003_chrY_T0001966;transcript_name=HG003_chrY_T0001966;gene_name=TSPY23P;ID=intron:HG003_chrY_T0001966:0;Name=TSPY23P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	24124	24205	.	+	.	source_transcript=ENST00000440136.1;source_transcript_name=TSPY23P-201;source_gene=ENSG00000229159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY23P;alternative_source_transcripts=ENST00000440136.1;transcript_id=HG003_chrY_T0001966;gene_id=HG003_chrY_G0000727;Parent=HG003_chrY_T0001966;transcript_name=HG003_chrY_T0001966;gene_name=TSPY23P;ID=exon:HG003_chrY_T0001966:1;Name=TSPY23P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	24206	24443	.	+	.	source_transcript=ENST00000440136.1;source_transcript_name=TSPY23P-201;source_gene=ENSG00000229159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY23P;alternative_source_transcripts=ENST00000440136.1;transcript_id=HG003_chrY_T0001966;gene_id=HG003_chrY_G0000727;Parent=HG003_chrY_T0001966;transcript_name=HG003_chrY_T0001966;gene_name=TSPY23P;ID=intron:HG003_chrY_T0001966:1;Name=TSPY23P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	24444	24514	.	+	.	source_transcript=ENST00000440136.1;source_transcript_name=TSPY23P-201;source_gene=ENSG00000229159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY23P;alternative_source_transcripts=ENST00000440136.1;transcript_id=HG003_chrY_T0001966;gene_id=HG003_chrY_G0000727;Parent=HG003_chrY_T0001966;transcript_name=HG003_chrY_T0001966;gene_name=TSPY23P;ID=exon:HG003_chrY_T0001966:2;Name=TSPY23P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	24515	24601	.	+	.	source_transcript=ENST00000440136.1;source_transcript_name=TSPY23P-201;source_gene=ENSG00000229159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY23P;alternative_source_transcripts=ENST00000440136.1;transcript_id=HG003_chrY_T0001966;gene_id=HG003_chrY_G0000727;Parent=HG003_chrY_T0001966;transcript_name=HG003_chrY_T0001966;gene_name=TSPY23P;ID=intron:HG003_chrY_T0001966:2;Name=TSPY23P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	24602	24745	.	+	.	source_transcript=ENST00000440136.1;source_transcript_name=TSPY23P-201;source_gene=ENSG00000229159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY23P;alternative_source_transcripts=ENST00000440136.1;transcript_id=HG003_chrY_T0001966;gene_id=HG003_chrY_G0000727;Parent=HG003_chrY_T0001966;transcript_name=HG003_chrY_T0001966;gene_name=TSPY23P;ID=exon:HG003_chrY_T0001966:3;Name=TSPY23P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	24746	24862	.	+	.	source_transcript=ENST00000440136.1;source_transcript_name=TSPY23P-201;source_gene=ENSG00000229159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY23P;alternative_source_transcripts=ENST00000440136.1;transcript_id=HG003_chrY_T0001966;gene_id=HG003_chrY_G0000727;Parent=HG003_chrY_T0001966;transcript_name=HG003_chrY_T0001966;gene_name=TSPY23P;ID=intron:HG003_chrY_T0001966:3;Name=TSPY23P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	24863	24910	.	+	.	source_transcript=ENST00000440136.1;source_transcript_name=TSPY23P-201;source_gene=ENSG00000229159.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229159.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000440136.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000440136.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY23P;alternative_source_transcripts=ENST00000440136.1;transcript_id=HG003_chrY_T0001966;gene_id=HG003_chrY_G0000727;Parent=HG003_chrY_T0001966;transcript_name=HG003_chrY_T0001966;gene_name=TSPY23P;ID=exon:HG003_chrY_T0001966:4;Name=TSPY23P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	37318	42601	.	+	.	source_gene_common_name=RBMY2UP;source_gene=ENSG00000225615.1;alternative_source_transcripts=ENST00000453474.1;gene_id=HG003_chrY_G0000728;gene_biotype=unprocessed_pseudogene;gene_name=RBMY2UP;gene_sources=liftoff;ID=HG003_chrY_G0000728;Name=RBMY2UP
HG003_chrY_random0000132	CAT	transcript	37318	42601	1000	+	.	source_transcript=ENST00000453474.1;source_transcript_name=RBMY2UP-201;source_gene=ENSG00000225615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453474.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453474.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2UP;alternative_source_transcripts=ENST00000453474.1;transcript_id=HG003_chrY_T0001967;gene_id=HG003_chrY_G0000728;Parent=HG003_chrY_G0000728;transcript_name=HG003_chrY_T0001967;gene_name=RBMY2UP;ID=HG003_chrY_T0001967;Name=RBMY2UP
HG003_chrY_random0000132	CAT	exon	37318	37425	.	+	.	source_transcript=ENST00000453474.1;source_transcript_name=RBMY2UP-201;source_gene=ENSG00000225615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453474.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2UP;alternative_source_transcripts=ENST00000453474.1;transcript_id=HG003_chrY_T0001967;gene_id=HG003_chrY_G0000728;Parent=HG003_chrY_T0001967;transcript_name=HG003_chrY_T0001967;gene_name=RBMY2UP;ID=exon:HG003_chrY_T0001967:0;Name=RBMY2UP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	37426	37828	.	+	.	source_transcript=ENST00000453474.1;source_transcript_name=RBMY2UP-201;source_gene=ENSG00000225615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453474.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2UP;alternative_source_transcripts=ENST00000453474.1;transcript_id=HG003_chrY_T0001967;gene_id=HG003_chrY_G0000728;Parent=HG003_chrY_T0001967;transcript_name=HG003_chrY_T0001967;gene_name=RBMY2UP;ID=intron:HG003_chrY_T0001967:0;Name=RBMY2UP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	37829	37931	.	+	.	source_transcript=ENST00000453474.1;source_transcript_name=RBMY2UP-201;source_gene=ENSG00000225615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453474.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2UP;alternative_source_transcripts=ENST00000453474.1;transcript_id=HG003_chrY_T0001967;gene_id=HG003_chrY_G0000728;Parent=HG003_chrY_T0001967;transcript_name=HG003_chrY_T0001967;gene_name=RBMY2UP;ID=exon:HG003_chrY_T0001967:1;Name=RBMY2UP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	37932	42488	.	+	.	source_transcript=ENST00000453474.1;source_transcript_name=RBMY2UP-201;source_gene=ENSG00000225615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453474.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2UP;alternative_source_transcripts=ENST00000453474.1;transcript_id=HG003_chrY_T0001967;gene_id=HG003_chrY_G0000728;Parent=HG003_chrY_T0001967;transcript_name=HG003_chrY_T0001967;gene_name=RBMY2UP;ID=intron:HG003_chrY_T0001967:1;Name=RBMY2UP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	42489	42601	.	+	.	source_transcript=ENST00000453474.1;source_transcript_name=RBMY2UP-201;source_gene=ENSG00000225615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453474.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453474.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2UP;alternative_source_transcripts=ENST00000453474.1;transcript_id=HG003_chrY_T0001967;gene_id=HG003_chrY_G0000728;Parent=HG003_chrY_T0001967;transcript_name=HG003_chrY_T0001967;gene_name=RBMY2UP;ID=exon:HG003_chrY_T0001967:2;Name=RBMY2UP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	48220	55469	.	+	.	source_gene_common_name=RBMY1KP;source_gene=ENSG00000229234.1;alternative_source_transcripts=ENST00000423480.1;gene_id=HG003_chrY_G0000729;gene_biotype=unprocessed_pseudogene;gene_name=RBMY1KP;gene_sources=liftoff;ID=HG003_chrY_G0000729;Name=RBMY1KP
HG003_chrY_random0000132	CAT	transcript	48220	55469	1000	+	.	source_transcript=ENST00000423480.1;source_transcript_name=RBMY1KP-201;source_gene=ENSG00000229234.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229234.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423480.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423480.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1KP;alternative_source_transcripts=ENST00000423480.1;transcript_id=HG003_chrY_T0001968;gene_id=HG003_chrY_G0000729;Parent=HG003_chrY_G0000729;transcript_name=HG003_chrY_T0001968;gene_name=RBMY1KP;ID=HG003_chrY_T0001968;Name=RBMY1KP
HG003_chrY_random0000132	CAT	exon	48220	48332	.	+	.	source_transcript=ENST00000423480.1;source_transcript_name=RBMY1KP-201;source_gene=ENSG00000229234.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229234.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423480.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423480.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1KP;alternative_source_transcripts=ENST00000423480.1;transcript_id=HG003_chrY_T0001968;gene_id=HG003_chrY_G0000729;Parent=HG003_chrY_T0001968;transcript_name=HG003_chrY_T0001968;gene_name=RBMY1KP;ID=exon:HG003_chrY_T0001968:0;Name=RBMY1KP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	48333	48845	.	+	.	source_transcript=ENST00000423480.1;source_transcript_name=RBMY1KP-201;source_gene=ENSG00000229234.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229234.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423480.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423480.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1KP;alternative_source_transcripts=ENST00000423480.1;transcript_id=HG003_chrY_T0001968;gene_id=HG003_chrY_G0000729;Parent=HG003_chrY_T0001968;transcript_name=HG003_chrY_T0001968;gene_name=RBMY1KP;ID=intron:HG003_chrY_T0001968:0;Name=RBMY1KP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	48846	48916	.	+	.	source_transcript=ENST00000423480.1;source_transcript_name=RBMY1KP-201;source_gene=ENSG00000229234.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229234.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423480.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423480.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1KP;alternative_source_transcripts=ENST00000423480.1;transcript_id=HG003_chrY_T0001968;gene_id=HG003_chrY_G0000729;Parent=HG003_chrY_T0001968;transcript_name=HG003_chrY_T0001968;gene_name=RBMY1KP;ID=exon:HG003_chrY_T0001968:1;Name=RBMY1KP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	48917	51313	.	+	.	source_transcript=ENST00000423480.1;source_transcript_name=RBMY1KP-201;source_gene=ENSG00000229234.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229234.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423480.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423480.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1KP;alternative_source_transcripts=ENST00000423480.1;transcript_id=HG003_chrY_T0001968;gene_id=HG003_chrY_G0000729;Parent=HG003_chrY_T0001968;transcript_name=HG003_chrY_T0001968;gene_name=RBMY1KP;ID=intron:HG003_chrY_T0001968:1;Name=RBMY1KP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	51314	51490	.	+	.	source_transcript=ENST00000423480.1;source_transcript_name=RBMY1KP-201;source_gene=ENSG00000229234.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229234.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423480.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423480.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1KP;alternative_source_transcripts=ENST00000423480.1;transcript_id=HG003_chrY_T0001968;gene_id=HG003_chrY_G0000729;Parent=HG003_chrY_T0001968;transcript_name=HG003_chrY_T0001968;gene_name=RBMY1KP;ID=exon:HG003_chrY_T0001968:2;Name=RBMY1KP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	51491	55354	.	+	.	source_transcript=ENST00000423480.1;source_transcript_name=RBMY1KP-201;source_gene=ENSG00000229234.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229234.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423480.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423480.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1KP;alternative_source_transcripts=ENST00000423480.1;transcript_id=HG003_chrY_T0001968;gene_id=HG003_chrY_G0000729;Parent=HG003_chrY_T0001968;transcript_name=HG003_chrY_T0001968;gene_name=RBMY1KP;ID=intron:HG003_chrY_T0001968:2;Name=RBMY1KP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	55355	55469	.	+	.	source_transcript=ENST00000423480.1;source_transcript_name=RBMY1KP-201;source_gene=ENSG00000229234.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229234.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423480.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423480.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1KP;alternative_source_transcripts=ENST00000423480.1;transcript_id=HG003_chrY_T0001968;gene_id=HG003_chrY_G0000729;Parent=HG003_chrY_T0001968;transcript_name=HG003_chrY_T0001968;gene_name=RBMY1KP;ID=exon:HG003_chrY_T0001968:3;Name=RBMY1KP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	135787	137865	.	-	.	source_gene_common_name=TTTY5;source_gene=ENSG00000215560.2;alternative_source_transcripts=ENST00000400581.2;gene_id=HG003_chrY_G0000730;gene_biotype=lncRNA;gene_name=TTTY5;gene_sources=liftoff;ID=HG003_chrY_G0000730;Name=TTTY5
HG003_chrY_random0000132	CAT	transcript	135787	137865	1000	-	.	source_transcript=ENST00000400581.2;source_transcript_name=TTTY5-201;source_gene=ENSG00000215560.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000215560.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400581.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000400581.2;transcript_score=299.872;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY5;alternative_source_transcripts=ENST00000400581.2;transcript_id=HG003_chrY_T0001969;gene_id=HG003_chrY_G0000730;Parent=HG003_chrY_G0000730;transcript_name=HG003_chrY_T0001969;gene_name=TTTY5;ID=HG003_chrY_T0001969;Name=TTTY5
HG003_chrY_random0000132	CAT	exon	135787	136777	.	-	.	source_transcript=ENST00000400581.2;source_transcript_name=TTTY5-201;source_gene=ENSG00000215560.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000215560.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400581.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000400581.2;transcript_score=299.872;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY5;alternative_source_transcripts=ENST00000400581.2;transcript_id=HG003_chrY_T0001969;gene_id=HG003_chrY_G0000730;Parent=HG003_chrY_T0001969;transcript_name=HG003_chrY_T0001969;gene_name=TTTY5;ID=exon:HG003_chrY_T0001969:0;Name=TTTY5;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	136778	137294	.	-	.	source_transcript=ENST00000400581.2;source_transcript_name=TTTY5-201;source_gene=ENSG00000215560.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000215560.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400581.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000400581.2;transcript_score=299.872;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY5;alternative_source_transcripts=ENST00000400581.2;transcript_id=HG003_chrY_T0001969;gene_id=HG003_chrY_G0000730;Parent=HG003_chrY_T0001969;transcript_name=HG003_chrY_T0001969;gene_name=TTTY5;ID=intron:HG003_chrY_T0001969:0;Name=TTTY5;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	137295	137865	.	-	.	source_transcript=ENST00000400581.2;source_transcript_name=TTTY5-201;source_gene=ENSG00000215560.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000215560.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400581.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000400581.2;transcript_score=299.872;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY5;alternative_source_transcripts=ENST00000400581.2;transcript_id=HG003_chrY_T0001969;gene_id=HG003_chrY_G0000730;Parent=HG003_chrY_T0001969;transcript_name=HG003_chrY_T0001969;gene_name=TTTY5;ID=exon:HG003_chrY_T0001969:1;Name=TTTY5;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	144920	146946	.	-	.	source_gene_common_name=TSPY22P;source_gene=ENSG00000229940.1;alternative_source_transcripts=ENST00000427496.1;gene_id=HG003_chrY_G0000731;gene_biotype=unprocessed_pseudogene;gene_name=TSPY22P;gene_sources=liftoff;ID=HG003_chrY_G0000731;Name=TSPY22P
HG003_chrY_random0000132	CAT	transcript	144920	146946	1000	-	.	source_transcript=ENST00000427496.1;source_transcript_name=TSPY22P-201;source_gene=ENSG00000229940.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229940.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427496.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427496.1;transcript_score=299.834;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY22P;alternative_source_transcripts=ENST00000427496.1;transcript_id=HG003_chrY_T0001970;gene_id=HG003_chrY_G0000731;Parent=HG003_chrY_G0000731;transcript_name=HG003_chrY_T0001970;gene_name=TSPY22P;ID=HG003_chrY_T0001970;Name=TSPY22P
HG003_chrY_random0000132	CAT	exon	144920	145065	.	-	.	source_transcript=ENST00000427496.1;source_transcript_name=TSPY22P-201;source_gene=ENSG00000229940.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229940.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427496.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427496.1;transcript_score=299.834;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY22P;alternative_source_transcripts=ENST00000427496.1;transcript_id=HG003_chrY_T0001970;gene_id=HG003_chrY_G0000731;Parent=HG003_chrY_T0001970;transcript_name=HG003_chrY_T0001970;gene_name=TSPY22P;ID=exon:HG003_chrY_T0001970:0;Name=TSPY22P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	145066	145149	.	-	.	source_transcript=ENST00000427496.1;source_transcript_name=TSPY22P-201;source_gene=ENSG00000229940.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229940.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427496.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427496.1;transcript_score=299.834;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY22P;alternative_source_transcripts=ENST00000427496.1;transcript_id=HG003_chrY_T0001970;gene_id=HG003_chrY_G0000731;Parent=HG003_chrY_T0001970;transcript_name=HG003_chrY_T0001970;gene_name=TSPY22P;ID=intron:HG003_chrY_T0001970:0;Name=TSPY22P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	145150	145215	.	-	.	source_transcript=ENST00000427496.1;source_transcript_name=TSPY22P-201;source_gene=ENSG00000229940.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229940.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427496.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427496.1;transcript_score=299.834;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY22P;alternative_source_transcripts=ENST00000427496.1;transcript_id=HG003_chrY_T0001970;gene_id=HG003_chrY_G0000731;Parent=HG003_chrY_T0001970;transcript_name=HG003_chrY_T0001970;gene_name=TSPY22P;ID=exon:HG003_chrY_T0001970:1;Name=TSPY22P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	145216	146554	.	-	.	source_transcript=ENST00000427496.1;source_transcript_name=TSPY22P-201;source_gene=ENSG00000229940.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229940.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427496.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427496.1;transcript_score=299.834;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY22P;alternative_source_transcripts=ENST00000427496.1;transcript_id=HG003_chrY_T0001970;gene_id=HG003_chrY_G0000731;Parent=HG003_chrY_T0001970;transcript_name=HG003_chrY_T0001970;gene_name=TSPY22P;ID=intron:HG003_chrY_T0001970:1;Name=TSPY22P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	146555	146946	.	-	.	source_transcript=ENST00000427496.1;source_transcript_name=TSPY22P-201;source_gene=ENSG00000229940.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229940.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427496.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427496.1;transcript_score=299.834;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY22P;alternative_source_transcripts=ENST00000427496.1;transcript_id=HG003_chrY_T0001970;gene_id=HG003_chrY_G0000731;Parent=HG003_chrY_T0001970;transcript_name=HG003_chrY_T0001970;gene_name=TSPY22P;ID=exon:HG003_chrY_T0001970:2;Name=TSPY22P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	147824	155200	.	+	.	source_gene_common_name=RBMY2FP;source_gene=ENSG00000290336.2;gene_id=HG003_chrY_G0000732;gene_biotype=lncRNA;gene_name=RBMY2FP;gene_sources=liftoff;ID=HG003_chrY_G0000732;Name=RBMY2FP
HG003_chrY_random0000132	CAT	transcript	147824	155200	1000	+	.	source_transcript=ENST00000303922.8;source_transcript_name=RBMY2FP-202;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303922.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000303922.8;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001971;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_G0000732;transcript_name=HG003_chrY_T0001971;gene_name=RBMY2FP;ID=HG003_chrY_T0001971;Name=RBMY2FP
HG003_chrY_random0000132	CAT	exon	147824	147965	.	+	.	source_transcript=ENST00000303922.8;source_transcript_name=RBMY2FP-202;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303922.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000303922.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001971;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_T0001971;transcript_name=HG003_chrY_T0001971;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001971:0;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	147966	149854	.	+	.	source_transcript=ENST00000303922.8;source_transcript_name=RBMY2FP-202;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303922.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000303922.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001971;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_T0001971;transcript_name=HG003_chrY_T0001971;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001971:0;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	149855	149967	.	+	.	source_transcript=ENST00000303922.8;source_transcript_name=RBMY2FP-202;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303922.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000303922.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001971;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_T0001971;transcript_name=HG003_chrY_T0001971;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001971:1;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	149968	150389	.	+	.	source_transcript=ENST00000303922.8;source_transcript_name=RBMY2FP-202;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303922.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000303922.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001971;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_T0001971;transcript_name=HG003_chrY_T0001971;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001971:1;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	150390	150493	.	+	.	source_transcript=ENST00000303922.8;source_transcript_name=RBMY2FP-202;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303922.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000303922.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001971;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_T0001971;transcript_name=HG003_chrY_T0001971;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001971:2;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	150494	153487	.	+	.	source_transcript=ENST00000303922.8;source_transcript_name=RBMY2FP-202;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303922.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000303922.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001971;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_T0001971;transcript_name=HG003_chrY_T0001971;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001971:2;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	153488	155200	.	+	.	source_transcript=ENST00000303922.8;source_transcript_name=RBMY2FP-202;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000303922.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000303922.8;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001971;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_T0001971;transcript_name=HG003_chrY_T0001971;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001971:3;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	transcript	147879	150106	1000	+	.	source_transcript=ENST00000724365.1;source_transcript_name=RBMY2FP-203;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000724365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000724365.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001972;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_G0000732;transcript_name=HG003_chrY_T0001972;gene_name=RBMY2FP;ID=HG003_chrY_T0001972;Name=RBMY2FP
HG003_chrY_random0000132	CAT	exon	147879	147965	.	+	.	source_transcript=ENST00000724365.1;source_transcript_name=RBMY2FP-203;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000724365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000724365.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001972;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_T0001972;transcript_name=HG003_chrY_T0001972;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001972:0;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	147966	148618	.	+	.	source_transcript=ENST00000724365.1;source_transcript_name=RBMY2FP-203;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000724365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000724365.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001972;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_T0001972;transcript_name=HG003_chrY_T0001972;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001972:0;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	148619	148705	.	+	.	source_transcript=ENST00000724365.1;source_transcript_name=RBMY2FP-203;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000724365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000724365.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001972;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_T0001972;transcript_name=HG003_chrY_T0001972;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001972:1;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	148706	149854	.	+	.	source_transcript=ENST00000724365.1;source_transcript_name=RBMY2FP-203;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000724365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000724365.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001972;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_T0001972;transcript_name=HG003_chrY_T0001972;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001972:1;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	149855	150106	.	+	.	source_transcript=ENST00000724365.1;source_transcript_name=RBMY2FP-203;source_gene=ENSG00000290336.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000290336.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000724365.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000724365.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001972;gene_id=HG003_chrY_G0000732;Parent=HG003_chrY_T0001972;transcript_name=HG003_chrY_T0001972;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001972:2;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	149859	160820	.	+	.	source_gene_common_name=RBMY2FP;source_gene=ENSG00000243040.7;gene_id=HG003_chrY_G0000733;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=RBMY2FP;gene_sources=liftoff;ID=HG003_chrY_G0000733;Name=RBMY2FP
HG003_chrY_random0000132	CAT	transcript	149859	160820	1000	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_G0000733;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=HG003_chrY_T0001973;Name=RBMY2FP
HG003_chrY_random0000132	CAT	exon	149859	149967	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001973:0;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	149968	150389	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001973:0;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	150390	150493	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001973:1;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	150494	153487	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001973:1;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	153488	153665	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001973:2;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	153666	155589	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001973:2;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	155590	155742	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001973:3;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	155743	157777	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001973:3;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	157778	157892	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001973:4;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	157893	159357	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001973:4;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	159358	159459	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001973:5;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	159460	159824	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001973:5;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	159825	159935	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001973:6;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	159936	160015	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001973:6;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	160016	160104	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001973:7;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	160105	160518	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=intron:HG003_chrY_T0001973:7;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	160519	160820	.	+	.	source_transcript=ENST00000420346.1;source_transcript_name=RBMY2FP-201;source_gene=ENSG00000243040.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000243040.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000420346.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420346.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2FP;transcript_id=HG003_chrY_T0001973;gene_id=HG003_chrY_G0000733;Parent=HG003_chrY_T0001973;transcript_name=HG003_chrY_T0001973;gene_name=RBMY2FP;ID=exon:HG003_chrY_T0001973:8;Name=RBMY2FP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	169448	171496	.	+	.	source_gene_common_name=TTTY25P;source_gene=ENSG00000259247.1;alternative_source_transcripts=ENST00000558356.1;gene_id=HG003_chrY_G0000734;gene_biotype=unprocessed_pseudogene;gene_name=TTTY25P;gene_sources=liftoff;ID=HG003_chrY_G0000734;Name=TTTY25P
HG003_chrY_random0000132	CAT	transcript	169448	171496	1000	+	.	source_transcript=ENST00000558356.1;source_transcript_name=TTTY25P-201;source_gene=ENSG00000259247.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000259247.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000558356.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000558356.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY25P;alternative_source_transcripts=ENST00000558356.1;transcript_id=HG003_chrY_T0001974;gene_id=HG003_chrY_G0000734;Parent=HG003_chrY_G0000734;transcript_name=HG003_chrY_T0001974;gene_name=TTTY25P;ID=HG003_chrY_T0001974;Name=TTTY25P
HG003_chrY_random0000132	CAT	exon	169448	170020	.	+	.	source_transcript=ENST00000558356.1;source_transcript_name=TTTY25P-201;source_gene=ENSG00000259247.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000259247.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000558356.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000558356.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY25P;alternative_source_transcripts=ENST00000558356.1;transcript_id=HG003_chrY_T0001974;gene_id=HG003_chrY_G0000734;Parent=HG003_chrY_T0001974;transcript_name=HG003_chrY_T0001974;gene_name=TTTY25P;ID=exon:HG003_chrY_T0001974:0;Name=TTTY25P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	170021	170564	.	+	.	source_transcript=ENST00000558356.1;source_transcript_name=TTTY25P-201;source_gene=ENSG00000259247.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000259247.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000558356.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000558356.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY25P;alternative_source_transcripts=ENST00000558356.1;transcript_id=HG003_chrY_T0001974;gene_id=HG003_chrY_G0000734;Parent=HG003_chrY_T0001974;transcript_name=HG003_chrY_T0001974;gene_name=TTTY25P;ID=intron:HG003_chrY_T0001974:0;Name=TTTY25P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	170565	171496	.	+	.	source_transcript=ENST00000558356.1;source_transcript_name=TTTY25P-201;source_gene=ENSG00000259247.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000259247.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000558356.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000558356.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY25P;alternative_source_transcripts=ENST00000558356.1;transcript_id=HG003_chrY_T0001974;gene_id=HG003_chrY_G0000734;Parent=HG003_chrY_T0001974;transcript_name=HG003_chrY_T0001974;gene_name=TTTY25P;ID=exon:HG003_chrY_T0001974:1;Name=TTTY25P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	221695	226978	.	-	.	source_gene_common_name=RBMY2UP;source_gene=ENSG00000225615.1;gene_id=HG003_chrY_G0000735;gene_biotype=unprocessed_pseudogene;gene_name=RBMY2UP;gene_sources=liftoff;ID=HG003_chrY_G0000735;Name=RBMY2UP
HG003_chrY_random0000132	CAT	transcript	221695	226978	1000	-	.	source_transcript=ENST00000453474.1;source_transcript_name=RBMY2UP-201;source_gene=ENSG00000225615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453474.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453474.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2UP;transcript_id=HG003_chrY_T0001975;gene_id=HG003_chrY_G0000735;Parent=HG003_chrY_G0000735;transcript_name=HG003_chrY_T0001975;gene_name=RBMY2UP;ID=HG003_chrY_T0001975;Name=RBMY2UP
HG003_chrY_random0000132	CAT	exon	221695	221807	.	-	.	source_transcript=ENST00000453474.1;source_transcript_name=RBMY2UP-201;source_gene=ENSG00000225615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453474.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453474.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2UP;transcript_id=HG003_chrY_T0001975;gene_id=HG003_chrY_G0000735;Parent=HG003_chrY_T0001975;transcript_name=HG003_chrY_T0001975;gene_name=RBMY2UP;ID=exon:HG003_chrY_T0001975:0;Name=RBMY2UP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	221808	226364	.	-	.	source_transcript=ENST00000453474.1;source_transcript_name=RBMY2UP-201;source_gene=ENSG00000225615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453474.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453474.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2UP;transcript_id=HG003_chrY_T0001975;gene_id=HG003_chrY_G0000735;Parent=HG003_chrY_T0001975;transcript_name=HG003_chrY_T0001975;gene_name=RBMY2UP;ID=intron:HG003_chrY_T0001975:0;Name=RBMY2UP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	226365	226467	.	-	.	source_transcript=ENST00000453474.1;source_transcript_name=RBMY2UP-201;source_gene=ENSG00000225615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453474.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453474.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2UP;transcript_id=HG003_chrY_T0001975;gene_id=HG003_chrY_G0000735;Parent=HG003_chrY_T0001975;transcript_name=HG003_chrY_T0001975;gene_name=RBMY2UP;ID=exon:HG003_chrY_T0001975:1;Name=RBMY2UP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	226468	226870	.	-	.	source_transcript=ENST00000453474.1;source_transcript_name=RBMY2UP-201;source_gene=ENSG00000225615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453474.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453474.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2UP;transcript_id=HG003_chrY_T0001975;gene_id=HG003_chrY_G0000735;Parent=HG003_chrY_T0001975;transcript_name=HG003_chrY_T0001975;gene_name=RBMY2UP;ID=intron:HG003_chrY_T0001975:1;Name=RBMY2UP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	226871	226978	.	-	.	source_transcript=ENST00000453474.1;source_transcript_name=RBMY2UP-201;source_gene=ENSG00000225615.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225615.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000453474.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000453474.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2UP;transcript_id=HG003_chrY_T0001975;gene_id=HG003_chrY_G0000735;Parent=HG003_chrY_T0001975;transcript_name=HG003_chrY_T0001975;gene_name=RBMY2UP;ID=exon:HG003_chrY_T0001975:2;Name=RBMY2UP;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	239392	241557	.	-	.	source_gene_common_name=TSPY21P;source_gene=ENSG00000237902.1;alternative_source_transcripts=ENST00000433481.1;gene_id=HG003_chrY_G0000736;gene_biotype=unprocessed_pseudogene;gene_name=TSPY21P;gene_sources=liftoff;ID=HG003_chrY_G0000736;Name=TSPY21P
HG003_chrY_random0000132	CAT	transcript	239392	241557	1000	-	.	source_transcript=ENST00000433481.1;source_transcript_name=TSPY21P-201;source_gene=ENSG00000237902.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237902.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433481.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY21P;alternative_source_transcripts=ENST00000433481.1;transcript_id=HG003_chrY_T0001976;gene_id=HG003_chrY_G0000736;Parent=HG003_chrY_G0000736;transcript_name=HG003_chrY_T0001976;gene_name=TSPY21P;ID=HG003_chrY_T0001976;Name=TSPY21P
HG003_chrY_random0000132	CAT	exon	239392	239433	.	-	.	source_transcript=ENST00000433481.1;source_transcript_name=TSPY21P-201;source_gene=ENSG00000237902.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237902.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY21P;alternative_source_transcripts=ENST00000433481.1;transcript_id=HG003_chrY_T0001976;gene_id=HG003_chrY_G0000736;Parent=HG003_chrY_T0001976;transcript_name=HG003_chrY_T0001976;gene_name=TSPY21P;ID=exon:HG003_chrY_T0001976:0;Name=TSPY21P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	239434	239550	.	-	.	source_transcript=ENST00000433481.1;source_transcript_name=TSPY21P-201;source_gene=ENSG00000237902.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237902.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY21P;alternative_source_transcripts=ENST00000433481.1;transcript_id=HG003_chrY_T0001976;gene_id=HG003_chrY_G0000736;Parent=HG003_chrY_T0001976;transcript_name=HG003_chrY_T0001976;gene_name=TSPY21P;ID=intron:HG003_chrY_T0001976:0;Name=TSPY21P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	239551	239694	.	-	.	source_transcript=ENST00000433481.1;source_transcript_name=TSPY21P-201;source_gene=ENSG00000237902.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237902.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY21P;alternative_source_transcripts=ENST00000433481.1;transcript_id=HG003_chrY_T0001976;gene_id=HG003_chrY_G0000736;Parent=HG003_chrY_T0001976;transcript_name=HG003_chrY_T0001976;gene_name=TSPY21P;ID=exon:HG003_chrY_T0001976:1;Name=TSPY21P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	239695	239780	.	-	.	source_transcript=ENST00000433481.1;source_transcript_name=TSPY21P-201;source_gene=ENSG00000237902.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237902.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY21P;alternative_source_transcripts=ENST00000433481.1;transcript_id=HG003_chrY_T0001976;gene_id=HG003_chrY_G0000736;Parent=HG003_chrY_T0001976;transcript_name=HG003_chrY_T0001976;gene_name=TSPY21P;ID=intron:HG003_chrY_T0001976:1;Name=TSPY21P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	239781	239846	.	-	.	source_transcript=ENST00000433481.1;source_transcript_name=TSPY21P-201;source_gene=ENSG00000237902.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237902.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY21P;alternative_source_transcripts=ENST00000433481.1;transcript_id=HG003_chrY_T0001976;gene_id=HG003_chrY_G0000736;Parent=HG003_chrY_T0001976;transcript_name=HG003_chrY_T0001976;gene_name=TSPY21P;ID=exon:HG003_chrY_T0001976:2;Name=TSPY21P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	239847	240090	.	-	.	source_transcript=ENST00000433481.1;source_transcript_name=TSPY21P-201;source_gene=ENSG00000237902.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237902.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY21P;alternative_source_transcripts=ENST00000433481.1;transcript_id=HG003_chrY_T0001976;gene_id=HG003_chrY_G0000736;Parent=HG003_chrY_T0001976;transcript_name=HG003_chrY_T0001976;gene_name=TSPY21P;ID=intron:HG003_chrY_T0001976:2;Name=TSPY21P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	240091	240175	.	-	.	source_transcript=ENST00000433481.1;source_transcript_name=TSPY21P-201;source_gene=ENSG00000237902.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237902.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY21P;alternative_source_transcripts=ENST00000433481.1;transcript_id=HG003_chrY_T0001976;gene_id=HG003_chrY_G0000736;Parent=HG003_chrY_T0001976;transcript_name=HG003_chrY_T0001976;gene_name=TSPY21P;ID=exon:HG003_chrY_T0001976:3;Name=TSPY21P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	240176	241163	.	-	.	source_transcript=ENST00000433481.1;source_transcript_name=TSPY21P-201;source_gene=ENSG00000237902.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237902.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY21P;alternative_source_transcripts=ENST00000433481.1;transcript_id=HG003_chrY_T0001976;gene_id=HG003_chrY_G0000736;Parent=HG003_chrY_T0001976;transcript_name=HG003_chrY_T0001976;gene_name=TSPY21P;ID=intron:HG003_chrY_T0001976:3;Name=TSPY21P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	241164	241557	.	-	.	source_transcript=ENST00000433481.1;source_transcript_name=TSPY21P-201;source_gene=ENSG00000237902.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237902.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TSPY21P;alternative_source_transcripts=ENST00000433481.1;transcript_id=HG003_chrY_T0001976;gene_id=HG003_chrY_G0000736;Parent=HG003_chrY_T0001976;transcript_name=HG003_chrY_T0001976;gene_name=TSPY21P;ID=exon:HG003_chrY_T0001976:4;Name=TSPY21P;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	gene	242399	256871	.	+	.	source_gene_common_name=RBMY1J;source_gene=ENSG00000226941.9;alternative_source_transcripts=ENST00000250831.6;gene_id=HG003_chrY_G0000737;gene_biotype=protein_coding;gene_name=RBMY1J;gene_sources=liftoff;ID=HG003_chrY_G0000737;Name=RBMY1J
HG003_chrY_random0000132	CAT	transcript	242399	256871	100	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_G0000737;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=HG003_chrY_T0001977;Name=RBMY1J
HG003_chrY_random0000132	CAT	exon	242399	242572	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001977:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	242573	244433	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001977:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	244434	244546	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001977:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	244438	244546	.	+	0	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001977:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	start_codon	244438	244440	.	+	0	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=start_codon:HG003_chrY_T0001977;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	244547	245014	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001977:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	245015	245118	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001977:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	245015	245118	.	+	2	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001977:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	245119	248141	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001977:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	248142	248319	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001977:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	248142	248319	.	+	0	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001977:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	248320	250234	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001977:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	250235	250387	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001977:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	250235	250387	.	+	2	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001977:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	250388	252397	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001977:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	252398	252512	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001977:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	252398	252512	.	+	2	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001977:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	252513	253467	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001977:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	253468	253578	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001977:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	253468	253578	.	+	1	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001977:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	253579	254018	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001977:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	254019	254129	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001977:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	254019	254129	.	+	1	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001977:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	254130	254563	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001977:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	254564	254674	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001977:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	254564	254674	.	+	1	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001977:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	254675	255597	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001977:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	255598	255708	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001977:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	255598	255708	.	+	1	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001977:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	255709	255794	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001977:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	255795	255883	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001977:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	255795	255883	.	+	1	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001977:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	255884	256294	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001977:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	256295	256871	.	+	.	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001977:11;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	CDS	256295	256593	.	+	2	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=CDS:HG003_chrY_T0001977:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	stop_codon	256591	256593	.	+	0	source_transcript=ENST00000250831.6;source_transcript_name=RBMY1J-201;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000250831.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000250831.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000250831.6;transcript_id=HG003_chrY_T0001977;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001977;transcript_name=HG003_chrY_T0001977;gene_name=RBMY1J;ID=stop_codon:HG003_chrY_T0001977;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	transcript	242450	256871	1000	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_G0000737;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=HG003_chrY_T0001978;Name=RBMY1J
HG003_chrY_random0000132	CAT	exon	242450	242572	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001978:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	242573	244433	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001978:0;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	244434	244546	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001978:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	244547	245014	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001978:1;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	245015	245118	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001978:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	245119	250234	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001978:2;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	250235	250387	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001978:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	250388	252397	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001978:3;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	252398	252512	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001978:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	252513	253467	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001978:4;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	253468	253578	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001978:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	253579	254018	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001978:5;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	254019	254129	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001978:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	254130	254563	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001978:6;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	254564	254674	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001978:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	254675	255597	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001978:7;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	255598	255708	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001978:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	255709	255794	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001978:8;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	255795	255883	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001978:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	intron	255884	256294	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=intron:HG003_chrY_T0001978:9;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000132	CAT	exon	256295	256871	.	+	.	source_transcript=ENST00000470460.1;source_transcript_name=RBMY1J-202;source_gene=ENSG00000226941.9;source_gene_biotype=protein_coding;original_gene_id=ENSG00000226941.9;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000470460.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000470460.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY1J;alternative_source_transcripts=ENST00000470460.1;transcript_id=HG003_chrY_T0001978;gene_id=HG003_chrY_G0000737;Parent=HG003_chrY_T0001978;transcript_name=HG003_chrY_T0001978;gene_name=RBMY1J;ID=exon:HG003_chrY_T0001978:10;Name=RBMY1J;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	9606	19423	.	-	.	source_gene_common_name=REREP2Y;source_gene=ENSG00000235014.1;gene_id=HG003_chrY_G0000738;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=REREP2Y;gene_sources=liftoff;ID=HG003_chrY_G0000738;Name=REREP2Y
HG003_chrY_random0000146	CAT	transcript	9606	19423	1000	-	.	source_transcript=ENST00000439103.1;source_transcript_name=REREP2Y-201;source_gene=ENSG00000235014.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235014.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000439103.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439103.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;transcript_id=HG003_chrY_T0001979;gene_id=HG003_chrY_G0000738;Parent=HG003_chrY_G0000738;transcript_name=HG003_chrY_T0001979;gene_name=REREP2Y;ID=HG003_chrY_T0001979;Name=REREP2Y
HG003_chrY_random0000146	CAT	exon	9606	9732	.	-	.	source_transcript=ENST00000439103.1;source_transcript_name=REREP2Y-201;source_gene=ENSG00000235014.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235014.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000439103.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;transcript_id=HG003_chrY_T0001979;gene_id=HG003_chrY_G0000738;Parent=HG003_chrY_T0001979;transcript_name=HG003_chrY_T0001979;gene_name=REREP2Y;ID=exon:HG003_chrY_T0001979:0;Name=REREP2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	9733	19350	.	-	.	source_transcript=ENST00000439103.1;source_transcript_name=REREP2Y-201;source_gene=ENSG00000235014.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235014.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000439103.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;transcript_id=HG003_chrY_T0001979;gene_id=HG003_chrY_G0000738;Parent=HG003_chrY_T0001979;transcript_name=HG003_chrY_T0001979;gene_name=REREP2Y;ID=intron:HG003_chrY_T0001979:0;Name=REREP2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	19351	19423	.	-	.	source_transcript=ENST00000439103.1;source_transcript_name=REREP2Y-201;source_gene=ENSG00000235014.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235014.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000439103.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000439103.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=REREP2Y;transcript_id=HG003_chrY_T0001979;gene_id=HG003_chrY_G0000738;Parent=HG003_chrY_T0001979;transcript_name=HG003_chrY_T0001979;gene_name=REREP2Y;ID=exon:HG003_chrY_T0001979:1;Name=REREP2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	45881	45982	.	-	.	source_gene_common_name=ENSG00000286744;source_gene=ENSG00000286744.1;gene_id=HG003_chrY_G0000739;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000286744;gene_sources=liftoff;ID=HG003_chrY_G0000739;Name=ENSG00000286744
HG003_chrY_random0000146	CAT	transcript	45881	45982	1000	-	.	source_transcript=ENST00000662956.1;source_transcript_name=ENST00000662956;source_gene=ENSG00000286744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000286744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000662956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662956.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286744;transcript_id=HG003_chrY_T0001980;gene_id=HG003_chrY_G0000739;Parent=HG003_chrY_G0000739;transcript_name=HG003_chrY_T0001980;gene_name=ENSG00000286744;ID=HG003_chrY_T0001980;Name=ENSG00000286744
HG003_chrY_random0000146	CAT	exon	45881	45982	.	-	.	source_transcript=ENST00000662956.1;source_transcript_name=ENST00000662956;source_gene=ENSG00000286744.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000286744.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000662956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000662956.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000286744;transcript_id=HG003_chrY_T0001980;gene_id=HG003_chrY_G0000739;Parent=HG003_chrY_T0001980;transcript_name=HG003_chrY_T0001980;gene_name=ENSG00000286744;ID=exon:HG003_chrY_T0001980:0;Name=ENSG00000286744;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	55616	55838	.	-	.	source_gene_common_name=ENSG00000225876;source_gene=ENSG00000225876.1;gene_id=HG003_chrY_G0000740;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000225876;gene_sources=liftoff;ID=HG003_chrY_G0000740;Name=ENSG00000225876
HG003_chrY_random0000146	CAT	transcript	55616	55838	1000	-	.	source_transcript=ENST00000426199.1;source_transcript_name=ENST00000426199;source_gene=ENSG00000225876.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225876.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426199.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000225876;transcript_id=HG003_chrY_T0001981;gene_id=HG003_chrY_G0000740;Parent=HG003_chrY_G0000740;transcript_name=HG003_chrY_T0001981;gene_name=ENSG00000225876;ID=HG003_chrY_T0001981;Name=ENSG00000225876
HG003_chrY_random0000146	CAT	exon	55616	55838	.	-	.	source_transcript=ENST00000426199.1;source_transcript_name=ENST00000426199;source_gene=ENSG00000225876.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225876.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000426199.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000426199.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000225876;transcript_id=HG003_chrY_T0001981;gene_id=HG003_chrY_G0000740;Parent=HG003_chrY_T0001981;transcript_name=HG003_chrY_T0001981;gene_name=ENSG00000225876;ID=exon:HG003_chrY_T0001981:0;Name=ENSG00000225876;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	58649	58786	.	+	.	source_gene_common_name=SNORA70;source_gene=ENSG00000251925.1;gene_id=HG003_chrY_G0000741;gene_biotype=snoRNA;gene_name=SNORA70;gene_sources=liftoff;ID=HG003_chrY_G0000741;Name=SNORA70
HG003_chrY_random0000146	CAT	transcript	58649	58786	1000	+	.	source_transcript=ENST00000516116.1;source_transcript_name=SNORA70.13-201;source_gene=ENSG00000251925.1;source_gene_biotype=snoRNA;original_gene_id=ENSG00000251925.1;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=ENST00000516116.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516116.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SNORA70;transcript_id=HG003_chrY_T0001982;gene_id=HG003_chrY_G0000741;Parent=HG003_chrY_G0000741;transcript_name=HG003_chrY_T0001982;gene_name=SNORA70;ID=HG003_chrY_T0001982;Name=SNORA70
HG003_chrY_random0000146	CAT	exon	58649	58786	.	+	.	source_transcript=ENST00000516116.1;source_transcript_name=SNORA70.13-201;source_gene=ENSG00000251925.1;source_gene_biotype=snoRNA;original_gene_id=ENSG00000251925.1;gene_biotype=snoRNA;transcript_biotype=snoRNA;alignment_id=ENST00000516116.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516116.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SNORA70;transcript_id=HG003_chrY_T0001982;gene_id=HG003_chrY_G0000741;Parent=HG003_chrY_T0001982;transcript_name=HG003_chrY_T0001982;gene_name=SNORA70;ID=exon:HG003_chrY_T0001982:0;Name=SNORA70;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	89187	102400	.	-	.	source_gene_common_name=PPP1R12BP2;source_gene=ENSG00000205936.3;gene_id=HG003_chrY_G0000742;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=PPP1R12BP2;gene_sources=liftoff;ID=HG003_chrY_G0000742;Name=PPP1R12BP2
HG003_chrY_random0000146	CAT	transcript	89187	102400	1000	-	.	source_transcript=ENST00000416956.1;source_transcript_name=PPP1R12BP2-201;source_gene=ENSG00000205936.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000205936.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000416956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416956.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP2;transcript_id=HG003_chrY_T0001983;gene_id=HG003_chrY_G0000742;Parent=HG003_chrY_G0000742;transcript_name=HG003_chrY_T0001983;gene_name=PPP1R12BP2;ID=HG003_chrY_T0001983;Name=PPP1R12BP2
HG003_chrY_random0000146	CAT	exon	89187	89228	.	-	.	source_transcript=ENST00000416956.1;source_transcript_name=PPP1R12BP2-201;source_gene=ENSG00000205936.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000205936.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000416956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416956.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP2;transcript_id=HG003_chrY_T0001983;gene_id=HG003_chrY_G0000742;Parent=HG003_chrY_T0001983;transcript_name=HG003_chrY_T0001983;gene_name=PPP1R12BP2;ID=exon:HG003_chrY_T0001983:0;Name=PPP1R12BP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	89229	90328	.	-	.	source_transcript=ENST00000416956.1;source_transcript_name=PPP1R12BP2-201;source_gene=ENSG00000205936.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000205936.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000416956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416956.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP2;transcript_id=HG003_chrY_T0001983;gene_id=HG003_chrY_G0000742;Parent=HG003_chrY_T0001983;transcript_name=HG003_chrY_T0001983;gene_name=PPP1R12BP2;ID=intron:HG003_chrY_T0001983:0;Name=PPP1R12BP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	90329	90441	.	-	.	source_transcript=ENST00000416956.1;source_transcript_name=PPP1R12BP2-201;source_gene=ENSG00000205936.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000205936.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000416956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416956.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP2;transcript_id=HG003_chrY_T0001983;gene_id=HG003_chrY_G0000742;Parent=HG003_chrY_T0001983;transcript_name=HG003_chrY_T0001983;gene_name=PPP1R12BP2;ID=exon:HG003_chrY_T0001983:1;Name=PPP1R12BP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	90442	90529	.	-	.	source_transcript=ENST00000416956.1;source_transcript_name=PPP1R12BP2-201;source_gene=ENSG00000205936.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000205936.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000416956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416956.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP2;transcript_id=HG003_chrY_T0001983;gene_id=HG003_chrY_G0000742;Parent=HG003_chrY_T0001983;transcript_name=HG003_chrY_T0001983;gene_name=PPP1R12BP2;ID=intron:HG003_chrY_T0001983:1;Name=PPP1R12BP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	90530	90719	.	-	.	source_transcript=ENST00000416956.1;source_transcript_name=PPP1R12BP2-201;source_gene=ENSG00000205936.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000205936.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000416956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416956.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP2;transcript_id=HG003_chrY_T0001983;gene_id=HG003_chrY_G0000742;Parent=HG003_chrY_T0001983;transcript_name=HG003_chrY_T0001983;gene_name=PPP1R12BP2;ID=exon:HG003_chrY_T0001983:2;Name=PPP1R12BP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	90720	92689	.	-	.	source_transcript=ENST00000416956.1;source_transcript_name=PPP1R12BP2-201;source_gene=ENSG00000205936.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000205936.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000416956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416956.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP2;transcript_id=HG003_chrY_T0001983;gene_id=HG003_chrY_G0000742;Parent=HG003_chrY_T0001983;transcript_name=HG003_chrY_T0001983;gene_name=PPP1R12BP2;ID=intron:HG003_chrY_T0001983:2;Name=PPP1R12BP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	92690	92893	.	-	.	source_transcript=ENST00000416956.1;source_transcript_name=PPP1R12BP2-201;source_gene=ENSG00000205936.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000205936.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000416956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416956.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP2;transcript_id=HG003_chrY_T0001983;gene_id=HG003_chrY_G0000742;Parent=HG003_chrY_T0001983;transcript_name=HG003_chrY_T0001983;gene_name=PPP1R12BP2;ID=exon:HG003_chrY_T0001983:3;Name=PPP1R12BP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	92894	102310	.	-	.	source_transcript=ENST00000416956.1;source_transcript_name=PPP1R12BP2-201;source_gene=ENSG00000205936.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000205936.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000416956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416956.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP2;transcript_id=HG003_chrY_T0001983;gene_id=HG003_chrY_G0000742;Parent=HG003_chrY_T0001983;transcript_name=HG003_chrY_T0001983;gene_name=PPP1R12BP2;ID=intron:HG003_chrY_T0001983:3;Name=PPP1R12BP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	102311	102400	.	-	.	source_transcript=ENST00000416956.1;source_transcript_name=PPP1R12BP2-201;source_gene=ENSG00000205936.3;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000205936.3;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000416956.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000416956.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=PPP1R12BP2;transcript_id=HG003_chrY_T0001983;gene_id=HG003_chrY_G0000742;Parent=HG003_chrY_T0001983;transcript_name=HG003_chrY_T0001983;gene_name=PPP1R12BP2;ID=exon:HG003_chrY_T0001983:4;Name=PPP1R12BP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	190500	260159	.	-	.	source_gene_common_name=DAZ1;source_gene=ENSG00000188120.16;gene_id=HG003_chrY_G0000743;gene_biotype=protein_coding;gene_name=DAZ1;gene_sources=liftoff;ID=HG003_chrY_G0000743;Name=DAZ1
HG003_chrY_random0000146	CAT	transcript	190500	260157	100	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_G0000743;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=HG003_chrY_T0001984;Name=DAZ1
HG003_chrY_random0000146	CAT	exon	190500	192356	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	192357	196319	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	196320	196418	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	196355	196418	.	-	1	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	196355	196357	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=stop_codon:HG003_chrY_T0001984;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	196419	200991	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	200992	201026	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	200992	201026	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	201027	201770	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	201771	201842	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	201771	201842	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	201843	204155	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	204156	204227	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	204156	204227	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	204228	213941	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	213942	214013	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	213942	214013	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	214014	216318	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	216319	216390	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	216319	216390	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	216391	218714	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	218715	218786	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	218715	218786	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	218787	221100	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	221101	221172	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	221101	221172	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	221173	223496	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	223497	223568	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	223497	223568	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	223569	225887	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	225888	225959	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	225888	225959	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	225960	228332	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	228333	228404	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	228333	228404	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	228405	229804	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	229805	229944	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	229805	229944	.	-	2	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	229945	230033	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	230034	230097	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	230034	230097	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	230098	230533	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	230534	230585	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	230534	230585	.	-	1	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	230586	231145	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	231146	231237	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	231146	231237	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	231238	231511	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	231512	231658	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:16;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	231512	231658	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	231659	240644	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:16;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	240645	240784	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:17;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	240645	240784	.	-	2	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:16;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	240785	240873	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:17;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	240874	240937	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:18;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	240874	240937	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:17;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	240938	241373	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:18;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	241374	241425	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:19;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	241374	241425	.	-	1	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:18;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	241426	241985	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:19;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	241986	242077	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:20;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	241986	242077	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:19;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	242078	242351	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:20;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	242352	242498	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:21;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	242352	242498	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:20;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	242499	251492	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:21;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	251493	251632	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:22;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	251493	251632	.	-	2	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:21;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	251633	251721	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:22;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	251722	251785	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:23;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	251722	251785	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:22;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	251786	252221	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:23;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	252222	252273	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:24;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	252222	252273	.	-	1	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:23;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	252274	252833	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:24;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	252834	252925	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:25;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	252834	252925	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:24;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	252926	253199	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:25;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	253200	253346	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:26;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	253200	253346	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:25;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	253347	259946	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=intron:HG003_chrY_T0001984:26;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	259947	260157	.	-	.	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=exon:HG003_chrY_T0001984:27;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	259947	259949	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001984:26;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	259947	259949	.	-	0	source_transcript=ENST00000405239.6;source_transcript_name=DAZ1-201;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000405239.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000405239.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001984;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001984;transcript_name=HG003_chrY_T0001984;gene_name=DAZ1;ID=start_codon:HG003_chrY_T0001984;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	190507	260159	100	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_G0000743;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=HG003_chrY_T0001985;Name=DAZ1
HG003_chrY_random0000146	CAT	exon	190507	192356	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	192357	196319	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	196320	196418	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	196355	196418	.	-	1	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	196355	196357	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=stop_codon:HG003_chrY_T0001985;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	196419	200991	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	200992	201026	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	200992	201026	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	201027	201770	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	201771	201842	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	201771	201842	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	201843	213941	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	213942	214013	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	213942	214013	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	214014	216318	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	216319	216390	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	216319	216390	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	216391	218714	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	218715	218786	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	218715	218786	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	218787	221100	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	221101	221172	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	221101	221172	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	221173	223496	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	223497	223568	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	223497	223568	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	223569	225887	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	225888	225959	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	225888	225959	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	225960	228332	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	228333	228404	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	228333	228404	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	228405	251492	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	251493	251632	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	251493	251632	.	-	2	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	251633	251721	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	251722	251785	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	251722	251785	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	251786	252221	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	252222	252273	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	252222	252273	.	-	1	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	252274	252833	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	252834	252925	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	252834	252925	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	252926	253199	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	253200	253346	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	253200	253346	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	253347	259946	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=intron:HG003_chrY_T0001985:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	259947	260159	.	-	.	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=exon:HG003_chrY_T0001985:16;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	259947	259949	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001985:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	259947	259949	.	-	0	source_transcript=ENST00000540248.5;source_transcript_name=DAZ1-204;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000540248.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000540248.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001985;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001985;transcript_name=HG003_chrY_T0001985;gene_name=DAZ1;ID=start_codon:HG003_chrY_T0001985;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	190508	201957	1000	-	.	source_transcript=ENST00000466332.1;source_transcript_name=DAZ1-203;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466332.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001986;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_G0000743;transcript_name=HG003_chrY_T0001986;gene_name=DAZ1;ID=HG003_chrY_T0001986;Name=DAZ1
HG003_chrY_random0000146	CAT	exon	190508	192356	.	-	.	source_transcript=ENST00000466332.1;source_transcript_name=DAZ1-203;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001986;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001986;transcript_name=HG003_chrY_T0001986;gene_name=DAZ1;ID=exon:HG003_chrY_T0001986:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	192357	196319	.	-	.	source_transcript=ENST00000466332.1;source_transcript_name=DAZ1-203;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001986;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001986;transcript_name=HG003_chrY_T0001986;gene_name=DAZ1;ID=intron:HG003_chrY_T0001986:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	196320	196418	.	-	.	source_transcript=ENST00000466332.1;source_transcript_name=DAZ1-203;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001986;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001986;transcript_name=HG003_chrY_T0001986;gene_name=DAZ1;ID=exon:HG003_chrY_T0001986:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	196419	199354	.	-	.	source_transcript=ENST00000466332.1;source_transcript_name=DAZ1-203;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001986;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001986;transcript_name=HG003_chrY_T0001986;gene_name=DAZ1;ID=intron:HG003_chrY_T0001986:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	199355	199426	.	-	.	source_transcript=ENST00000466332.1;source_transcript_name=DAZ1-203;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001986;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001986;transcript_name=HG003_chrY_T0001986;gene_name=DAZ1;ID=exon:HG003_chrY_T0001986:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	199427	200991	.	-	.	source_transcript=ENST00000466332.1;source_transcript_name=DAZ1-203;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001986;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001986;transcript_name=HG003_chrY_T0001986;gene_name=DAZ1;ID=intron:HG003_chrY_T0001986:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	200992	201026	.	-	.	source_transcript=ENST00000466332.1;source_transcript_name=DAZ1-203;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001986;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001986;transcript_name=HG003_chrY_T0001986;gene_name=DAZ1;ID=exon:HG003_chrY_T0001986:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	201027	201770	.	-	.	source_transcript=ENST00000466332.1;source_transcript_name=DAZ1-203;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001986;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001986;transcript_name=HG003_chrY_T0001986;gene_name=DAZ1;ID=intron:HG003_chrY_T0001986:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	201771	201957	.	-	.	source_transcript=ENST00000466332.1;source_transcript_name=DAZ1-203;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000466332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000466332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001986;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001986;transcript_name=HG003_chrY_T0001986;gene_name=DAZ1;ID=exon:HG003_chrY_T0001986:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	191855	260157	100	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_G0000743;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=HG003_chrY_T0001987;Name=DAZ1
HG003_chrY_random0000146	CAT	exon	191855	192356	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	192357	196319	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	196320	196418	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	196355	196418	.	-	1	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:0;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	196355	196357	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=stop_codon:HG003_chrY_T0001987;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	196419	200991	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	200992	201026	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	200992	201026	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:1;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	201027	201770	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	201771	201842	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	201771	201842	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:2;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	201843	204155	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	204156	204227	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	204156	204227	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:3;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	204228	213941	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	213942	214013	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	213942	214013	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:4;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	214014	218714	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	218715	218786	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	218715	218786	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:5;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	218787	223496	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	223497	223568	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	223497	223568	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:6;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	223569	225887	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	225888	225959	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	225888	225959	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:7;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	225960	228332	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	228333	228404	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	228333	228404	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:8;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	228405	251492	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	251493	251632	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	251493	251632	.	-	2	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:9;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	251633	251721	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	251722	251785	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	251722	251785	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:10;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	251786	252221	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	252222	252273	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	252222	252273	.	-	1	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:11;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	252274	252833	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	252834	252925	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	252834	252925	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:12;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	252926	253199	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	253200	253346	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	253200	253346	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:13;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	253347	259946	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=intron:HG003_chrY_T0001987:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	259947	260157	.	-	.	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=exon:HG003_chrY_T0001987:15;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	259947	259949	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=CDS:HG003_chrY_T0001987:14;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	259947	259949	.	-	0	source_transcript=ENST00000426000.6;source_transcript_name=DAZ1-202;source_gene=ENSG00000188120.16;source_gene_biotype=protein_coding;original_gene_id=ENSG00000188120.16;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000426000.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000426000.6;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ1;transcript_id=HG003_chrY_T0001987;gene_id=HG003_chrY_G0000743;Parent=HG003_chrY_T0001987;transcript_name=HG003_chrY_T0001987;gene_name=DAZ1;ID=start_codon:HG003_chrY_T0001987;Name=DAZ1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	280596	338186	.	+	.	source_gene_common_name=DAZ2;source_gene=ENSG00000205944.12;gene_id=HG003_chrY_G0000744;gene_biotype=protein_coding;gene_name=DAZ2;gene_sources=liftoff;ID=HG003_chrY_G0000744;Name=DAZ2
HG003_chrY_random0000146	CAT	transcript	280596	338186	9950	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_G0000744;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=HG003_chrY_T0001988;Name=DAZ2
HG003_chrY_random0000146	CAT	exon	280596	280892	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	280890	280892	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	280890	280892	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=start_codon:HG003_chrY_T0001988;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	280893	287492	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287493	287639	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287493	287639	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	287640	287913	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287914	288005	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287914	288005	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288006	288565	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	288566	288617	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	288566	288617	.	+	1	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288618	289053	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289054	289117	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289054	289117	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289118	289206	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289207	289346	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289207	289346	.	+	2	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289347	290746	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	290747	290818	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	290747	290818	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	290819	293189	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	293190	293261	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	293190	293261	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	293262	295580	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	295581	295652	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	295581	295652	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	295653	302755	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	302756	302827	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	302756	302827	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	302828	305132	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	305133	305204	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	305133	305204	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	305205	314921	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	314922	314993	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	314922	314993	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	314994	317305	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	317306	317377	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	317306	317377	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	317378	319689	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	319690	319761	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	319690	319761	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	319762	322074	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	322075	322146	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	322075	322146	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	322147	324458	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	324459	324530	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	324459	324530	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	324531	326843	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	326844	326915	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	326844	326915	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	326916	327659	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	327660	327694	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	327660	327694	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	327695	332267	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	332268	332366	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	332268	332331	.	+	1	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001988:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	332329	332331	.	+	0	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=stop_codon:HG003_chrY_T0001988;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	332367	336329	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=intron:HG003_chrY_T0001988:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	336330	338186	.	+	.	source_transcript=ENST00000382449.5;source_transcript_name=DAZ2-203;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382449.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000382449.5;transcript_score=272.90563636363635;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001988;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001988;transcript_name=HG003_chrY_T0001988;gene_name=DAZ2;ID=exon:HG003_chrY_T0001988:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	280682	338186	9940	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_G0000744;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=HG003_chrY_T0001989;Name=DAZ2
HG003_chrY_random0000146	CAT	exon	280682	280892	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	280890	280892	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	280890	280892	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=start_codon:HG003_chrY_T0001989;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	280893	287492	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287493	287639	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287493	287639	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	287640	287913	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287914	288005	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287914	288005	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288006	288565	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	288566	288617	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	288566	288617	.	+	1	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288618	289053	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289054	289117	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289054	289117	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289118	289206	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289207	289346	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289207	289346	.	+	2	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289347	290746	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	290747	290818	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	290747	290818	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	290819	293189	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	293190	293261	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	293190	293261	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	293262	295580	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	295581	295652	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	295581	295652	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	295653	297976	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	297977	298048	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	297977	298048	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	298049	300359	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	300360	300431	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	300360	300431	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	300432	302755	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	302756	302827	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	302756	302827	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	302828	305132	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	305133	305204	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	305133	305204	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	305205	314921	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	314922	314993	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	314922	314993	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	314994	317305	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	317306	317377	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	317306	317377	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	317378	319689	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	319690	319761	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	319690	319761	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	319762	322074	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	322075	322146	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	322075	322146	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	322147	324458	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	324459	324530	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	324459	324530	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	324531	326843	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	326844	326915	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	326844	326915	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	326916	327659	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	327660	327694	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	327660	327694	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	327695	332267	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:19;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	332268	332366	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:20;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	332268	332331	.	+	1	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001989:20;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	332329	332331	.	+	0	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=stop_codon:HG003_chrY_T0001989;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	332367	336329	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=intron:HG003_chrY_T0001989:20;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	336330	338186	.	+	.	source_transcript=ENST00000382440.6;source_transcript_name=DAZ2-202;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382440.6;alignment_mode=liftoff;normalized_transcript_id=ENST00000382440.6;transcript_score=255.79277777777776;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001989;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001989;transcript_name=HG003_chrY_T0001989;gene_name=DAZ2;ID=exon:HG003_chrY_T0001989:21;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	280697	336829	9910	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_G0000744;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=HG003_chrY_T0001990;Name=DAZ2
HG003_chrY_random0000146	CAT	exon	280697	280892	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	280890	280892	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	280890	280892	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=start_codon:HG003_chrY_T0001990;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	280893	287492	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:0;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287493	287639	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287493	287639	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	287640	287913	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:1;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	287914	288005	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	287914	288005	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288006	288565	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:2;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	288566	288617	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	288566	288617	.	+	1	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	288618	289053	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:3;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289054	289117	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289054	289117	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289118	289206	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:4;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	289207	289346	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	289207	289346	.	+	2	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	289347	290746	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:5;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	290747	290818	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	290747	290818	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	290819	293189	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:6;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	293190	293261	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	293190	293261	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	293262	295580	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:7;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	295581	295652	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	295581	295652	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	295653	305132	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:8;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	305133	305204	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	305133	305204	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	305205	314921	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:9;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	314922	314993	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	314922	314993	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	314994	317305	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:10;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	317306	317377	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	317306	317377	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	317378	319689	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:11;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	319690	319761	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	319690	319761	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	319762	322074	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:12;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	322075	322146	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	322075	322146	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	322147	324458	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:13;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	324459	324530	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	324459	324530	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	324531	326843	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:14;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	326844	326915	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	326844	326915	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	326916	327659	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:15;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	327660	327694	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	327660	327694	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	327695	332267	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:16;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	332268	332366	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	332268	332331	.	+	1	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=CDS:HG003_chrY_T0001990:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	332329	332331	.	+	0	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=stop_codon:HG003_chrY_T0001990;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	332367	336329	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=intron:HG003_chrY_T0001990:17;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	336330	336829	.	+	.	source_transcript=ENST00000382433.4;source_transcript_name=DAZ2-201;source_gene=ENSG00000205944.12;source_gene_biotype=protein_coding;original_gene_id=ENSG00000205944.12;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382433.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000382433.4;transcript_score=256.7938695652174;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DAZ2;transcript_id=HG003_chrY_T0001990;gene_id=HG003_chrY_G0000744;Parent=HG003_chrY_T0001990;transcript_name=HG003_chrY_T0001990;gene_name=DAZ2;ID=exon:HG003_chrY_T0001990:18;Name=DAZ2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	408337	409497	.	-	.	source_gene_common_name=TRIM60P9Y;source_gene=ENSG00000227251.1;gene_id=HG003_chrY_G0000745;gene_biotype=processed_pseudogene;gene_name=TRIM60P9Y;gene_sources=liftoff;ID=HG003_chrY_G0000745;Name=TRIM60P9Y
HG003_chrY_random0000146	CAT	transcript	408337	409497	1000	-	.	source_transcript=ENST00000438459.1;source_transcript_name=TRIM60P9Y-201;source_gene=ENSG00000227251.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227251.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000438459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438459.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P9Y;transcript_id=HG003_chrY_T0001991;gene_id=HG003_chrY_G0000745;Parent=HG003_chrY_G0000745;transcript_name=HG003_chrY_T0001991;gene_name=TRIM60P9Y;ID=HG003_chrY_T0001991;Name=TRIM60P9Y
HG003_chrY_random0000146	CAT	exon	408337	408852	.	-	.	source_transcript=ENST00000438459.1;source_transcript_name=TRIM60P9Y-201;source_gene=ENSG00000227251.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227251.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000438459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438459.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P9Y;transcript_id=HG003_chrY_T0001991;gene_id=HG003_chrY_G0000745;Parent=HG003_chrY_T0001991;transcript_name=HG003_chrY_T0001991;gene_name=TRIM60P9Y;ID=exon:HG003_chrY_T0001991:0;Name=TRIM60P9Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	408853	409197	.	-	.	source_transcript=ENST00000438459.1;source_transcript_name=TRIM60P9Y-201;source_gene=ENSG00000227251.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227251.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000438459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438459.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P9Y;transcript_id=HG003_chrY_T0001991;gene_id=HG003_chrY_G0000745;Parent=HG003_chrY_T0001991;transcript_name=HG003_chrY_T0001991;gene_name=TRIM60P9Y;ID=intron:HG003_chrY_T0001991:0;Name=TRIM60P9Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	409198	409497	.	-	.	source_transcript=ENST00000438459.1;source_transcript_name=TRIM60P9Y-201;source_gene=ENSG00000227251.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000227251.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000438459.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438459.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P9Y;transcript_id=HG003_chrY_T0001991;gene_id=HG003_chrY_G0000745;Parent=HG003_chrY_T0001991;transcript_name=HG003_chrY_T0001991;gene_name=TRIM60P9Y;ID=exon:HG003_chrY_T0001991:1;Name=TRIM60P9Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	416348	418296	.	-	.	source_gene_common_name=ZNF736P3Y;source_gene=ENSG00000233126.3;gene_id=HG003_chrY_G0000746;gene_biotype=processed_pseudogene;gene_name=ZNF736P3Y;gene_sources=liftoff;ID=HG003_chrY_G0000746;Name=ZNF736P3Y
HG003_chrY_random0000146	CAT	transcript	416348	418296	1000	-	.	source_transcript=ENST00000428264.1;source_transcript_name=ZNF736P3Y-201;source_gene=ENSG00000233126.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233126.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000428264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428264.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P3Y;transcript_id=HG003_chrY_T0001992;gene_id=HG003_chrY_G0000746;Parent=HG003_chrY_G0000746;transcript_name=HG003_chrY_T0001992;gene_name=ZNF736P3Y;ID=HG003_chrY_T0001992;Name=ZNF736P3Y
HG003_chrY_random0000146	CAT	exon	416348	417641	.	-	.	source_transcript=ENST00000428264.1;source_transcript_name=ZNF736P3Y-201;source_gene=ENSG00000233126.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233126.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000428264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428264.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P3Y;transcript_id=HG003_chrY_T0001992;gene_id=HG003_chrY_G0000746;Parent=HG003_chrY_T0001992;transcript_name=HG003_chrY_T0001992;gene_name=ZNF736P3Y;ID=exon:HG003_chrY_T0001992:0;Name=ZNF736P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	417642	417806	.	-	.	source_transcript=ENST00000428264.1;source_transcript_name=ZNF736P3Y-201;source_gene=ENSG00000233126.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233126.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000428264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428264.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P3Y;transcript_id=HG003_chrY_T0001992;gene_id=HG003_chrY_G0000746;Parent=HG003_chrY_T0001992;transcript_name=HG003_chrY_T0001992;gene_name=ZNF736P3Y;ID=intron:HG003_chrY_T0001992:0;Name=ZNF736P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	417807	417863	.	-	.	source_transcript=ENST00000428264.1;source_transcript_name=ZNF736P3Y-201;source_gene=ENSG00000233126.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233126.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000428264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428264.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P3Y;transcript_id=HG003_chrY_T0001992;gene_id=HG003_chrY_G0000746;Parent=HG003_chrY_T0001992;transcript_name=HG003_chrY_T0001992;gene_name=ZNF736P3Y;ID=exon:HG003_chrY_T0001992:1;Name=ZNF736P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	417864	418182	.	-	.	source_transcript=ENST00000428264.1;source_transcript_name=ZNF736P3Y-201;source_gene=ENSG00000233126.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233126.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000428264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428264.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P3Y;transcript_id=HG003_chrY_T0001992;gene_id=HG003_chrY_G0000746;Parent=HG003_chrY_T0001992;transcript_name=HG003_chrY_T0001992;gene_name=ZNF736P3Y;ID=intron:HG003_chrY_T0001992:1;Name=ZNF736P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	418183	418296	.	-	.	source_transcript=ENST00000428264.1;source_transcript_name=ZNF736P3Y-201;source_gene=ENSG00000233126.3;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233126.3;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000428264.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000428264.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P3Y;transcript_id=HG003_chrY_T0001992;gene_id=HG003_chrY_G0000746;Parent=HG003_chrY_T0001992;transcript_name=HG003_chrY_T0001992;gene_name=ZNF736P3Y;ID=exon:HG003_chrY_T0001992:2;Name=ZNF736P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	440878	441947	.	-	.	source_gene_common_name=TRIM60P8Y;source_gene=ENSG00000232764.1;gene_id=HG003_chrY_G0000747;gene_biotype=processed_pseudogene;gene_name=TRIM60P8Y;gene_sources=liftoff;ID=HG003_chrY_G0000747;Name=TRIM60P8Y
HG003_chrY_random0000146	CAT	transcript	440878	441947	1000	-	.	source_transcript=ENST00000436338.1;source_transcript_name=TRIM60P8Y-201;source_gene=ENSG00000232764.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232764.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000436338.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436338.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P8Y;transcript_id=HG003_chrY_T0001993;gene_id=HG003_chrY_G0000747;Parent=HG003_chrY_G0000747;transcript_name=HG003_chrY_T0001993;gene_name=TRIM60P8Y;ID=HG003_chrY_T0001993;Name=TRIM60P8Y
HG003_chrY_random0000146	CAT	exon	440878	441388	.	-	.	source_transcript=ENST00000436338.1;source_transcript_name=TRIM60P8Y-201;source_gene=ENSG00000232764.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232764.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000436338.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436338.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P8Y;transcript_id=HG003_chrY_T0001993;gene_id=HG003_chrY_G0000747;Parent=HG003_chrY_T0001993;transcript_name=HG003_chrY_T0001993;gene_name=TRIM60P8Y;ID=exon:HG003_chrY_T0001993:0;Name=TRIM60P8Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	441389	441696	.	-	.	source_transcript=ENST00000436338.1;source_transcript_name=TRIM60P8Y-201;source_gene=ENSG00000232764.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232764.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000436338.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436338.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P8Y;transcript_id=HG003_chrY_T0001993;gene_id=HG003_chrY_G0000747;Parent=HG003_chrY_T0001993;transcript_name=HG003_chrY_T0001993;gene_name=TRIM60P8Y;ID=intron:HG003_chrY_T0001993:0;Name=TRIM60P8Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	441697	441947	.	-	.	source_transcript=ENST00000436338.1;source_transcript_name=TRIM60P8Y-201;source_gene=ENSG00000232764.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000232764.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000436338.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000436338.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRIM60P8Y;transcript_id=HG003_chrY_T0001993;gene_id=HG003_chrY_G0000747;Parent=HG003_chrY_T0001993;transcript_name=HG003_chrY_T0001993;gene_name=TRIM60P8Y;ID=exon:HG003_chrY_T0001993:1;Name=TRIM60P8Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	449675	450478	.	-	.	source_gene_common_name=ZNF736P5Y;source_gene=ENSG00000230819.1;gene_id=HG003_chrY_G0000748;gene_biotype=processed_pseudogene;gene_name=ZNF736P5Y;gene_sources=liftoff;ID=HG003_chrY_G0000748;Name=ZNF736P5Y
HG003_chrY_random0000146	CAT	transcript	449675	450478	1000	-	.	source_transcript=ENST00000451173.1;source_transcript_name=ZNF736P5Y-201;source_gene=ENSG00000230819.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000230819.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000451173.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451173.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P5Y;transcript_id=HG003_chrY_T0001994;gene_id=HG003_chrY_G0000748;Parent=HG003_chrY_G0000748;transcript_name=HG003_chrY_T0001994;gene_name=ZNF736P5Y;ID=HG003_chrY_T0001994;Name=ZNF736P5Y
HG003_chrY_random0000146	CAT	exon	449675	450478	.	-	.	source_transcript=ENST00000451173.1;source_transcript_name=ZNF736P5Y-201;source_gene=ENSG00000230819.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000230819.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000451173.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000451173.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P5Y;transcript_id=HG003_chrY_T0001994;gene_id=HG003_chrY_G0000748;Parent=HG003_chrY_T0001994;transcript_name=HG003_chrY_T0001994;gene_name=ZNF736P5Y;ID=exon:HG003_chrY_T0001994:0;Name=ZNF736P5Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	462076	493723	.	-	.	source_gene_common_name=BPY2;source_gene=ENSG00000183753.10;alternative_source_transcripts=ENST00000382392.5;gene_id=HG003_chrY_G0000749;gene_biotype=protein_coding;gene_name=BPY2;gene_sources=liftoff;ID=HG003_chrY_G0000749;Name=BPY2
HG003_chrY_random0000146	CAT	transcript	462076	483279	100	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_G0000749;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=HG003_chrY_T0001995;Name=BPY2
HG003_chrY_random0000146	CAT	exon	462076	462397	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=exon:HG003_chrY_T0001995:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	462398	462491	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=intron:HG003_chrY_T0001995:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	462492	462616	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=exon:HG003_chrY_T0001995:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	462617	469166	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=intron:HG003_chrY_T0001995:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	469167	469291	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=exon:HG003_chrY_T0001995:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	469273	469291	.	-	1	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=CDS:HG003_chrY_T0001995:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	469273	469275	.	-	0	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=stop_codon:HG003_chrY_T0001995;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	469292	469983	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=intron:HG003_chrY_T0001995:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	469984	470089	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=exon:HG003_chrY_T0001995:3;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	469984	470089	.	-	2	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=CDS:HG003_chrY_T0001995:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	470090	472943	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=intron:HG003_chrY_T0001995:3;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	472944	473061	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=exon:HG003_chrY_T0001995:4;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	472944	473061	.	-	0	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=CDS:HG003_chrY_T0001995:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	473062	475120	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=intron:HG003_chrY_T0001995:4;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	475121	475239	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=exon:HG003_chrY_T0001995:5;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	475121	475198	.	-	0	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=CDS:HG003_chrY_T0001995:3;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	475196	475198	.	-	0	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=start_codon:HG003_chrY_T0001995;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	475240	479648	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=intron:HG003_chrY_T0001995:5;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	479649	479785	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=exon:HG003_chrY_T0001995:6;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	479786	482850	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=intron:HG003_chrY_T0001995:6;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	482851	482973	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=exon:HG003_chrY_T0001995:7;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	482974	483248	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=intron:HG003_chrY_T0001995:7;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	483249	483279	.	-	.	source_transcript=ENST00000331070.8;source_transcript_name=BPY2-201;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000331070.8;alignment_mode=liftoff;normalized_transcript_id=ENST00000331070.8;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000382392.5;transcript_id=HG003_chrY_T0001995;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001995;transcript_name=HG003_chrY_T0001995;gene_name=BPY2;ID=exon:HG003_chrY_T0001995:8;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	462135	483255	1000	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_G0000749;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=HG003_chrY_T0001996;Name=BPY2
HG003_chrY_random0000146	CAT	exon	462135	462397	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=exon:HG003_chrY_T0001996:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	462398	462486	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=intron:HG003_chrY_T0001996:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	462487	462616	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=exon:HG003_chrY_T0001996:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	462617	469166	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=intron:HG003_chrY_T0001996:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	469167	469291	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=exon:HG003_chrY_T0001996:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	469292	469983	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=intron:HG003_chrY_T0001996:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	469984	470089	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=exon:HG003_chrY_T0001996:3;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	470090	475120	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=intron:HG003_chrY_T0001996:3;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	475121	475239	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=exon:HG003_chrY_T0001996:4;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	475240	479648	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=intron:HG003_chrY_T0001996:4;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	479649	479785	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=exon:HG003_chrY_T0001996:5;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	479786	482850	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=intron:HG003_chrY_T0001996:5;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	482851	482973	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=exon:HG003_chrY_T0001996:6;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	482974	483248	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=intron:HG003_chrY_T0001996:6;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	483249	483255	.	-	.	source_transcript=ENST00000602818.2;source_transcript_name=BPY2-204;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding_CDS_not_defined;alignment_id=ENST00000602818.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000602818.2;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602549.1;transcript_id=HG003_chrY_T0001996;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001996;transcript_name=HG003_chrY_T0001996;gene_name=BPY2;ID=exon:HG003_chrY_T0001996:7;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	469273	475198	100	-	.	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_G0000749;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=HG003_chrY_T0001997;Name=BPY2
HG003_chrY_random0000146	CAT	exon	469273	469291	.	-	.	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=exon:HG003_chrY_T0001997:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	469273	469291	.	-	1	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=CDS:HG003_chrY_T0001997:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	469273	469275	.	-	0	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=stop_codon:HG003_chrY_T0001997;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	469292	469983	.	-	.	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=intron:HG003_chrY_T0001997:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	469984	470089	.	-	.	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=exon:HG003_chrY_T0001997:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	469984	470089	.	-	2	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=CDS:HG003_chrY_T0001997:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	470090	472943	.	-	.	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=intron:HG003_chrY_T0001997:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	472944	473061	.	-	.	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=exon:HG003_chrY_T0001997:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	472944	473061	.	-	0	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=CDS:HG003_chrY_T0001997:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	473062	475120	.	-	.	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=intron:HG003_chrY_T0001997:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	475121	475198	.	-	.	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=exon:HG003_chrY_T0001997:3;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	475121	475198	.	-	0	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=CDS:HG003_chrY_T0001997:3;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	475196	475198	.	-	0	source_transcript=ENST00000382585.2;source_transcript_name=BPY2-202;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382585.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000382585.2;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000615850.1;transcript_id=HG003_chrY_T0001997;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001997;transcript_name=HG003_chrY_T0001997;gene_name=BPY2;ID=start_codon:HG003_chrY_T0001997;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	475166	493723	100	-	.	source_transcript=ENST00000602732.5;source_transcript_name=BPY2-203;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602732.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602732.5;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602770.5;transcript_id=HG003_chrY_T0001998;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_G0000749;transcript_name=HG003_chrY_T0001998;gene_name=BPY2;ID=HG003_chrY_T0001998;Name=BPY2
HG003_chrY_random0000146	CAT	exon	475166	475239	.	-	.	source_transcript=ENST00000602732.5;source_transcript_name=BPY2-203;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602732.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602732.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602770.5;transcript_id=HG003_chrY_T0001998;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001998;transcript_name=HG003_chrY_T0001998;gene_name=BPY2;ID=exon:HG003_chrY_T0001998:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	475166	475198	.	-	0	source_transcript=ENST00000602732.5;source_transcript_name=BPY2-203;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602732.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602732.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602770.5;transcript_id=HG003_chrY_T0001998;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001998;transcript_name=HG003_chrY_T0001998;gene_name=BPY2;ID=CDS:HG003_chrY_T0001998:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	475196	475198	.	-	0	source_transcript=ENST00000602732.5;source_transcript_name=BPY2-203;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602732.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602732.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602770.5;transcript_id=HG003_chrY_T0001998;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001998;transcript_name=HG003_chrY_T0001998;gene_name=BPY2;ID=start_codon:HG003_chrY_T0001998;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	475240	479648	.	-	.	source_transcript=ENST00000602732.5;source_transcript_name=BPY2-203;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602732.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602732.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602770.5;transcript_id=HG003_chrY_T0001998;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001998;transcript_name=HG003_chrY_T0001998;gene_name=BPY2;ID=intron:HG003_chrY_T0001998:0;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	479649	479785	.	-	.	source_transcript=ENST00000602732.5;source_transcript_name=BPY2-203;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602732.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602732.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602770.5;transcript_id=HG003_chrY_T0001998;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001998;transcript_name=HG003_chrY_T0001998;gene_name=BPY2;ID=exon:HG003_chrY_T0001998:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	479786	482850	.	-	.	source_transcript=ENST00000602732.5;source_transcript_name=BPY2-203;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602732.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602732.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602770.5;transcript_id=HG003_chrY_T0001998;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001998;transcript_name=HG003_chrY_T0001998;gene_name=BPY2;ID=intron:HG003_chrY_T0001998:1;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	482851	482973	.	-	.	source_transcript=ENST00000602732.5;source_transcript_name=BPY2-203;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602732.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602732.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602770.5;transcript_id=HG003_chrY_T0001998;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001998;transcript_name=HG003_chrY_T0001998;gene_name=BPY2;ID=exon:HG003_chrY_T0001998:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	482974	483325	.	-	.	source_transcript=ENST00000602732.5;source_transcript_name=BPY2-203;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602732.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602732.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602770.5;transcript_id=HG003_chrY_T0001998;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001998;transcript_name=HG003_chrY_T0001998;gene_name=BPY2;ID=intron:HG003_chrY_T0001998:2;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	483326	483394	.	-	.	source_transcript=ENST00000602732.5;source_transcript_name=BPY2-203;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602732.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602732.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602770.5;transcript_id=HG003_chrY_T0001998;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001998;transcript_name=HG003_chrY_T0001998;gene_name=BPY2;ID=exon:HG003_chrY_T0001998:3;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	483395	493567	.	-	.	source_transcript=ENST00000602732.5;source_transcript_name=BPY2-203;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602732.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602732.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602770.5;transcript_id=HG003_chrY_T0001998;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001998;transcript_name=HG003_chrY_T0001998;gene_name=BPY2;ID=intron:HG003_chrY_T0001998:3;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	493568	493723	.	-	.	source_transcript=ENST00000602732.5;source_transcript_name=BPY2-203;source_gene=ENSG00000183753.10;source_gene_biotype=protein_coding;original_gene_id=ENSG00000183753.10;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000602732.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000602732.5;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=False;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=BPY2;alternative_source_transcripts=ENST00000602770.5;transcript_id=HG003_chrY_T0001998;gene_id=HG003_chrY_G0000749;Parent=HG003_chrY_T0001998;transcript_name=HG003_chrY_T0001998;gene_name=BPY2;ID=exon:HG003_chrY_T0001998:4;Name=BPY2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	494258	531077	.	-	.	source_gene_common_name=TTTY4C;source_gene=ENSG00000228296.1;alternative_source_transcripts=ENST00000420149.1;gene_id=HG003_chrY_G0000750;gene_biotype=lncRNA;gene_name=TTTY4C;gene_sources=liftoff;ID=HG003_chrY_G0000750;Name=TTTY4C
HG003_chrY_random0000146	CAT	transcript	494258	531077	1000	-	.	source_transcript=ENST00000456123.1;source_transcript_name=TTTY4C-201;source_gene=ENSG00000228296.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228296.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000456123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456123.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=ENST00000420149.1;transcript_id=HG003_chrY_T0001999;gene_id=HG003_chrY_G0000750;Parent=HG003_chrY_G0000750;transcript_name=HG003_chrY_T0001999;gene_name=TTTY4C;ID=HG003_chrY_T0001999;Name=TTTY4C
HG003_chrY_random0000146	CAT	exon	494258	495258	.	-	.	source_transcript=ENST00000456123.1;source_transcript_name=TTTY4C-201;source_gene=ENSG00000228296.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228296.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000456123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456123.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=ENST00000420149.1;transcript_id=HG003_chrY_T0001999;gene_id=HG003_chrY_G0000750;Parent=HG003_chrY_T0001999;transcript_name=HG003_chrY_T0001999;gene_name=TTTY4C;ID=exon:HG003_chrY_T0001999:0;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	495259	501926	.	-	.	source_transcript=ENST00000456123.1;source_transcript_name=TTTY4C-201;source_gene=ENSG00000228296.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228296.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000456123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456123.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=ENST00000420149.1;transcript_id=HG003_chrY_T0001999;gene_id=HG003_chrY_G0000750;Parent=HG003_chrY_T0001999;transcript_name=HG003_chrY_T0001999;gene_name=TTTY4C;ID=intron:HG003_chrY_T0001999:0;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	501927	502034	.	-	.	source_transcript=ENST00000456123.1;source_transcript_name=TTTY4C-201;source_gene=ENSG00000228296.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228296.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000456123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456123.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=ENST00000420149.1;transcript_id=HG003_chrY_T0001999;gene_id=HG003_chrY_G0000750;Parent=HG003_chrY_T0001999;transcript_name=HG003_chrY_T0001999;gene_name=TTTY4C;ID=exon:HG003_chrY_T0001999:1;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	502035	503838	.	-	.	source_transcript=ENST00000456123.1;source_transcript_name=TTTY4C-201;source_gene=ENSG00000228296.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228296.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000456123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456123.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=ENST00000420149.1;transcript_id=HG003_chrY_T0001999;gene_id=HG003_chrY_G0000750;Parent=HG003_chrY_T0001999;transcript_name=HG003_chrY_T0001999;gene_name=TTTY4C;ID=intron:HG003_chrY_T0001999:1;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	503839	503914	.	-	.	source_transcript=ENST00000456123.1;source_transcript_name=TTTY4C-201;source_gene=ENSG00000228296.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228296.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000456123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456123.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=ENST00000420149.1;transcript_id=HG003_chrY_T0001999;gene_id=HG003_chrY_G0000750;Parent=HG003_chrY_T0001999;transcript_name=HG003_chrY_T0001999;gene_name=TTTY4C;ID=exon:HG003_chrY_T0001999:2;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	503915	530916	.	-	.	source_transcript=ENST00000456123.1;source_transcript_name=TTTY4C-201;source_gene=ENSG00000228296.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228296.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000456123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456123.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=ENST00000420149.1;transcript_id=HG003_chrY_T0001999;gene_id=HG003_chrY_G0000750;Parent=HG003_chrY_T0001999;transcript_name=HG003_chrY_T0001999;gene_name=TTTY4C;ID=intron:HG003_chrY_T0001999:2;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	530917	531077	.	-	.	source_transcript=ENST00000456123.1;source_transcript_name=TTTY4C-201;source_gene=ENSG00000228296.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000228296.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000456123.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000456123.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY4C;alternative_source_transcripts=ENST00000420149.1;transcript_id=HG003_chrY_T0001999;gene_id=HG003_chrY_G0000750;Parent=HG003_chrY_T0001999;transcript_name=HG003_chrY_T0001999;gene_name=TTTY4C;ID=exon:HG003_chrY_T0001999:3;Name=TTTY4C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	599785	601027	.	+	.	source_gene_common_name=ZNF736P4Y;source_gene=ENSG00000236379.2;alternative_source_transcripts=ENST00000443152.1;gene_id=HG003_chrY_G0000751;gene_biotype=processed_pseudogene;gene_name=ZNF736P4Y;gene_sources=liftoff;ID=HG003_chrY_G0000751;Name=ZNF736P4Y
HG003_chrY_random0000146	CAT	transcript	599785	601027	1000	+	.	source_transcript=ENST00000454995.1;source_transcript_name=ZNF736P4Y-201;source_gene=ENSG00000236379.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000236379.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000454995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454995.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P4Y;alternative_source_transcripts=ENST00000443152.1;transcript_id=HG003_chrY_T0002000;gene_id=HG003_chrY_G0000751;Parent=HG003_chrY_G0000751;transcript_name=HG003_chrY_T0002000;gene_name=ZNF736P4Y;ID=HG003_chrY_T0002000;Name=ZNF736P4Y
HG003_chrY_random0000146	CAT	exon	599785	601027	.	+	.	source_transcript=ENST00000454995.1;source_transcript_name=ZNF736P4Y-201;source_gene=ENSG00000236379.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000236379.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000454995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000454995.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ZNF736P4Y;alternative_source_transcripts=ENST00000443152.1;transcript_id=HG003_chrY_T0002000;gene_id=HG003_chrY_G0000751;Parent=HG003_chrY_T0002000;transcript_name=HG003_chrY_T0002000;gene_name=ZNF736P4Y;ID=exon:HG003_chrY_T0002000:0;Name=ZNF736P4Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	605706	606423	.	+	.	source_gene_common_name=ENSG00000274899;source_gene=ENSG00000274899.1;gene_id=HG003_chrY_G0000752;gene_biotype=processed_pseudogene;gene_name=ENSG00000274899;gene_sources=liftoff;ID=HG003_chrY_G0000752;Name=ENSG00000274899
HG003_chrY_random0000146	CAT	transcript	605706	606423	1000	+	.	source_transcript=ENST00000619436.1;source_transcript_name=ENST00000619436;source_gene=ENSG00000274899.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274899.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000619436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000619436.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274899;transcript_id=HG003_chrY_T0002001;gene_id=HG003_chrY_G0000752;Parent=HG003_chrY_G0000752;transcript_name=HG003_chrY_T0002001;gene_name=ENSG00000274899;ID=HG003_chrY_T0002001;Name=ENSG00000274899
HG003_chrY_random0000146	CAT	exon	605706	605978	.	+	.	source_transcript=ENST00000619436.1;source_transcript_name=ENST00000619436;source_gene=ENSG00000274899.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274899.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000619436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000619436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274899;transcript_id=HG003_chrY_T0002001;gene_id=HG003_chrY_G0000752;Parent=HG003_chrY_T0002001;transcript_name=HG003_chrY_T0002001;gene_name=ENSG00000274899;ID=exon:HG003_chrY_T0002001:0;Name=ENSG00000274899;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	605979	606281	.	+	.	source_transcript=ENST00000619436.1;source_transcript_name=ENST00000619436;source_gene=ENSG00000274899.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274899.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000619436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000619436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274899;transcript_id=HG003_chrY_T0002001;gene_id=HG003_chrY_G0000752;Parent=HG003_chrY_T0002001;transcript_name=HG003_chrY_T0002001;gene_name=ENSG00000274899;ID=intron:HG003_chrY_T0002001:0;Name=ENSG00000274899;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	606282	606423	.	+	.	source_transcript=ENST00000619436.1;source_transcript_name=ENST00000619436;source_gene=ENSG00000274899.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000274899.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000619436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000619436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000274899;transcript_id=HG003_chrY_T0002001;gene_id=HG003_chrY_G0000752;Parent=HG003_chrY_T0002001;transcript_name=HG003_chrY_T0002001;gene_name=ENSG00000274899;ID=exon:HG003_chrY_T0002001:1;Name=ENSG00000274899;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	613454	645041	.	-	.	source_gene_common_name=TTTY17C;source_gene=ENSG00000223641.3;gene_id=HG003_chrY_G0000753;gene_biotype=lncRNA;gene_name=TTTY17C;gene_sources=liftoff;ID=HG003_chrY_G0000753;Name=TTTY17C
HG003_chrY_random0000146	CAT	transcript	613454	644909	1000	-	.	source_transcript=ENST00000421387.3;source_transcript_name=TTTY17C-201;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421387.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421387.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002002;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_G0000753;transcript_name=HG003_chrY_T0002002;gene_name=TTTY17C;ID=HG003_chrY_T0002002;Name=TTTY17C
HG003_chrY_random0000146	CAT	exon	613454	613774	.	-	.	source_transcript=ENST00000421387.3;source_transcript_name=TTTY17C-201;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421387.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421387.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002002;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002002;transcript_name=HG003_chrY_T0002002;gene_name=TTTY17C;ID=exon:HG003_chrY_T0002002:0;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	613775	614774	.	-	.	source_transcript=ENST00000421387.3;source_transcript_name=TTTY17C-201;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421387.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421387.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002002;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002002;transcript_name=HG003_chrY_T0002002;gene_name=TTTY17C;ID=intron:HG003_chrY_T0002002:0;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	614775	614935	.	-	.	source_transcript=ENST00000421387.3;source_transcript_name=TTTY17C-201;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421387.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421387.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002002;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002002;transcript_name=HG003_chrY_T0002002;gene_name=TTTY17C;ID=exon:HG003_chrY_T0002002:1;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	614936	615901	.	-	.	source_transcript=ENST00000421387.3;source_transcript_name=TTTY17C-201;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421387.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421387.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002002;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002002;transcript_name=HG003_chrY_T0002002;gene_name=TTTY17C;ID=intron:HG003_chrY_T0002002:1;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	615902	616026	.	-	.	source_transcript=ENST00000421387.3;source_transcript_name=TTTY17C-201;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421387.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421387.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002002;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002002;transcript_name=HG003_chrY_T0002002;gene_name=TTTY17C;ID=exon:HG003_chrY_T0002002:2;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	616027	631791	.	-	.	source_transcript=ENST00000421387.3;source_transcript_name=TTTY17C-201;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421387.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421387.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002002;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002002;transcript_name=HG003_chrY_T0002002;gene_name=TTTY17C;ID=intron:HG003_chrY_T0002002:2;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	631792	631900	.	-	.	source_transcript=ENST00000421387.3;source_transcript_name=TTTY17C-201;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421387.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421387.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002002;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002002;transcript_name=HG003_chrY_T0002002;gene_name=TTTY17C;ID=exon:HG003_chrY_T0002002:3;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	631901	644507	.	-	.	source_transcript=ENST00000421387.3;source_transcript_name=TTTY17C-201;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421387.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421387.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002002;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002002;transcript_name=HG003_chrY_T0002002;gene_name=TTTY17C;ID=intron:HG003_chrY_T0002002:3;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	644508	644577	.	-	.	source_transcript=ENST00000421387.3;source_transcript_name=TTTY17C-201;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421387.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421387.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002002;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002002;transcript_name=HG003_chrY_T0002002;gene_name=TTTY17C;ID=exon:HG003_chrY_T0002002:4;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	644578	644863	.	-	.	source_transcript=ENST00000421387.3;source_transcript_name=TTTY17C-201;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421387.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421387.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002002;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002002;transcript_name=HG003_chrY_T0002002;gene_name=TTTY17C;ID=intron:HG003_chrY_T0002002:4;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	644864	644909	.	-	.	source_transcript=ENST00000421387.3;source_transcript_name=TTTY17C-201;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000421387.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000421387.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002002;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002002;transcript_name=HG003_chrY_T0002002;gene_name=TTTY17C;ID=exon:HG003_chrY_T0002002:5;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	613454	645041	1000	-	.	source_transcript=ENST00000772950.1;source_transcript_name=TTTY17C-202;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772950.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772950.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002003;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_G0000753;transcript_name=HG003_chrY_T0002003;gene_name=TTTY17C;ID=HG003_chrY_T0002003;Name=TTTY17C
HG003_chrY_random0000146	CAT	exon	613454	613774	.	-	.	source_transcript=ENST00000772950.1;source_transcript_name=TTTY17C-202;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772950.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772950.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002003;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002003;transcript_name=HG003_chrY_T0002003;gene_name=TTTY17C;ID=exon:HG003_chrY_T0002003:0;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	613775	614774	.	-	.	source_transcript=ENST00000772950.1;source_transcript_name=TTTY17C-202;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772950.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772950.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002003;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002003;transcript_name=HG003_chrY_T0002003;gene_name=TTTY17C;ID=intron:HG003_chrY_T0002003:0;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	614775	614935	.	-	.	source_transcript=ENST00000772950.1;source_transcript_name=TTTY17C-202;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772950.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772950.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002003;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002003;transcript_name=HG003_chrY_T0002003;gene_name=TTTY17C;ID=exon:HG003_chrY_T0002003:1;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	614936	615901	.	-	.	source_transcript=ENST00000772950.1;source_transcript_name=TTTY17C-202;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772950.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772950.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002003;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002003;transcript_name=HG003_chrY_T0002003;gene_name=TTTY17C;ID=intron:HG003_chrY_T0002003:1;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	615902	616026	.	-	.	source_transcript=ENST00000772950.1;source_transcript_name=TTTY17C-202;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772950.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772950.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002003;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002003;transcript_name=HG003_chrY_T0002003;gene_name=TTTY17C;ID=exon:HG003_chrY_T0002003:2;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	616027	626152	.	-	.	source_transcript=ENST00000772950.1;source_transcript_name=TTTY17C-202;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772950.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772950.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002003;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002003;transcript_name=HG003_chrY_T0002003;gene_name=TTTY17C;ID=intron:HG003_chrY_T0002003:2;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	626153	626269	.	-	.	source_transcript=ENST00000772950.1;source_transcript_name=TTTY17C-202;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772950.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772950.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002003;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002003;transcript_name=HG003_chrY_T0002003;gene_name=TTTY17C;ID=exon:HG003_chrY_T0002003:3;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	626270	644507	.	-	.	source_transcript=ENST00000772950.1;source_transcript_name=TTTY17C-202;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772950.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772950.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002003;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002003;transcript_name=HG003_chrY_T0002003;gene_name=TTTY17C;ID=intron:HG003_chrY_T0002003:3;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	644508	644577	.	-	.	source_transcript=ENST00000772950.1;source_transcript_name=TTTY17C-202;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772950.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772950.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002003;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002003;transcript_name=HG003_chrY_T0002003;gene_name=TTTY17C;ID=exon:HG003_chrY_T0002003:4;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	644578	644971	.	-	.	source_transcript=ENST00000772950.1;source_transcript_name=TTTY17C-202;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772950.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772950.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002003;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002003;transcript_name=HG003_chrY_T0002003;gene_name=TTTY17C;ID=intron:HG003_chrY_T0002003:4;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	644972	645041	.	-	.	source_transcript=ENST00000772950.1;source_transcript_name=TTTY17C-202;source_gene=ENSG00000223641.3;source_gene_biotype=lncRNA;original_gene_id=ENSG00000223641.3;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000772950.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000772950.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY17C;transcript_id=HG003_chrY_T0002003;gene_id=HG003_chrY_G0000753;Parent=HG003_chrY_T0002003;transcript_name=HG003_chrY_T0002003;gene_name=TTTY17C;ID=exon:HG003_chrY_T0002003:5;Name=TTTY17C;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	645355	650445	.	+	.	source_gene_common_name=ENSG00000294545;source_gene=ENSG00000294545.1;alternative_source_transcripts=ENST00000833217.1;gene_id=HG003_chrY_G0000754;gene_biotype=lncRNA;gene_name=ENSG00000294545;gene_sources=liftoff;ID=HG003_chrY_G0000754;Name=ENSG00000294545
HG003_chrY_random0000146	CAT	transcript	645355	650445	1000	+	.	source_transcript=ENST00000724319.1;source_transcript_name=ENST00000724319;source_gene=ENSG00000294545.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294545.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000724319.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000724319.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294545;alternative_source_transcripts=ENST00000833217.1;transcript_id=HG003_chrY_T0002004;gene_id=HG003_chrY_G0000754;Parent=HG003_chrY_G0000754;transcript_name=HG003_chrY_T0002004;gene_name=ENSG00000294545;ID=HG003_chrY_T0002004;Name=ENSG00000294545
HG003_chrY_random0000146	CAT	exon	645355	645451	.	+	.	source_transcript=ENST00000724319.1;source_transcript_name=ENST00000724319;source_gene=ENSG00000294545.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294545.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000724319.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000724319.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294545;alternative_source_transcripts=ENST00000833217.1;transcript_id=HG003_chrY_T0002004;gene_id=HG003_chrY_G0000754;Parent=HG003_chrY_T0002004;transcript_name=HG003_chrY_T0002004;gene_name=ENSG00000294545;ID=exon:HG003_chrY_T0002004:0;Name=ENSG00000294545;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	645452	650103	.	+	.	source_transcript=ENST00000724319.1;source_transcript_name=ENST00000724319;source_gene=ENSG00000294545.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294545.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000724319.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000724319.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294545;alternative_source_transcripts=ENST00000833217.1;transcript_id=HG003_chrY_T0002004;gene_id=HG003_chrY_G0000754;Parent=HG003_chrY_T0002004;transcript_name=HG003_chrY_T0002004;gene_name=ENSG00000294545;ID=intron:HG003_chrY_T0002004:0;Name=ENSG00000294545;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	650104	650445	.	+	.	source_transcript=ENST00000724319.1;source_transcript_name=ENST00000724319;source_gene=ENSG00000294545.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000294545.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000724319.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000724319.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000294545;alternative_source_transcripts=ENST00000833217.1;transcript_id=HG003_chrY_T0002004;gene_id=HG003_chrY_G0000754;Parent=HG003_chrY_T0002004;transcript_name=HG003_chrY_T0002004;gene_name=ENSG00000294545;ID=exon:HG003_chrY_T0002004:1;Name=ENSG00000294545;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	695428	780008	.	+	.	source_gene_common_name=ENSG00000306715;source_gene=ENSG00000306715.1;gene_id=HG003_chrY_G0000755;gene_biotype=lncRNA;gene_name=ENSG00000306715;gene_sources=liftoff;ID=HG003_chrY_G0000755;Name=ENSG00000306715
HG003_chrY_random0000146	CAT	transcript	695428	780008	1000	+	.	source_transcript=ENST00000820371.1;source_transcript_name=ENST00000820371;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820371.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002005;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_G0000755;transcript_name=HG003_chrY_T0002005;gene_name=ENSG00000306715;ID=HG003_chrY_T0002005;Name=ENSG00000306715
HG003_chrY_random0000146	CAT	exon	695428	695526	.	+	.	source_transcript=ENST00000820371.1;source_transcript_name=ENST00000820371;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002005;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002005;transcript_name=HG003_chrY_T0002005;gene_name=ENSG00000306715;ID=exon:HG003_chrY_T0002005:0;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	695527	707135	.	+	.	source_transcript=ENST00000820371.1;source_transcript_name=ENST00000820371;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002005;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002005;transcript_name=HG003_chrY_T0002005;gene_name=ENSG00000306715;ID=intron:HG003_chrY_T0002005:0;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	707136	707243	.	+	.	source_transcript=ENST00000820371.1;source_transcript_name=ENST00000820371;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002005;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002005;transcript_name=HG003_chrY_T0002005;gene_name=ENSG00000306715;ID=exon:HG003_chrY_T0002005:1;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	707244	721681	.	+	.	source_transcript=ENST00000820371.1;source_transcript_name=ENST00000820371;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002005;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002005;transcript_name=HG003_chrY_T0002005;gene_name=ENSG00000306715;ID=intron:HG003_chrY_T0002005:1;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	721682	721786	.	+	.	source_transcript=ENST00000820371.1;source_transcript_name=ENST00000820371;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002005;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002005;transcript_name=HG003_chrY_T0002005;gene_name=ENSG00000306715;ID=exon:HG003_chrY_T0002005:2;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	721787	779596	.	+	.	source_transcript=ENST00000820371.1;source_transcript_name=ENST00000820371;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002005;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002005;transcript_name=HG003_chrY_T0002005;gene_name=ENSG00000306715;ID=intron:HG003_chrY_T0002005:2;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	779597	780008	.	+	.	source_transcript=ENST00000820371.1;source_transcript_name=ENST00000820371;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820371.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820371.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002005;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002005;transcript_name=HG003_chrY_T0002005;gene_name=ENSG00000306715;ID=exon:HG003_chrY_T0002005:3;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	695459	727070	1000	+	.	source_transcript=ENST00000820372.1;source_transcript_name=ENST00000820372;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820372.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002006;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_G0000755;transcript_name=HG003_chrY_T0002006;gene_name=ENSG00000306715;ID=HG003_chrY_T0002006;Name=ENSG00000306715
HG003_chrY_random0000146	CAT	exon	695459	695526	.	+	.	source_transcript=ENST00000820372.1;source_transcript_name=ENST00000820372;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820372.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002006;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002006;transcript_name=HG003_chrY_T0002006;gene_name=ENSG00000306715;ID=exon:HG003_chrY_T0002006:0;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	695527	707135	.	+	.	source_transcript=ENST00000820372.1;source_transcript_name=ENST00000820372;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820372.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002006;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002006;transcript_name=HG003_chrY_T0002006;gene_name=ENSG00000306715;ID=intron:HG003_chrY_T0002006:0;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	707136	707243	.	+	.	source_transcript=ENST00000820372.1;source_transcript_name=ENST00000820372;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820372.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002006;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002006;transcript_name=HG003_chrY_T0002006;gene_name=ENSG00000306715;ID=exon:HG003_chrY_T0002006:1;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	707244	721681	.	+	.	source_transcript=ENST00000820372.1;source_transcript_name=ENST00000820372;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820372.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002006;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002006;transcript_name=HG003_chrY_T0002006;gene_name=ENSG00000306715;ID=intron:HG003_chrY_T0002006:1;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	721682	721786	.	+	.	source_transcript=ENST00000820372.1;source_transcript_name=ENST00000820372;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820372.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002006;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002006;transcript_name=HG003_chrY_T0002006;gene_name=ENSG00000306715;ID=exon:HG003_chrY_T0002006:2;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	721787	726415	.	+	.	source_transcript=ENST00000820372.1;source_transcript_name=ENST00000820372;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820372.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002006;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002006;transcript_name=HG003_chrY_T0002006;gene_name=ENSG00000306715;ID=intron:HG003_chrY_T0002006:2;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	726416	727070	.	+	.	source_transcript=ENST00000820372.1;source_transcript_name=ENST00000820372;source_gene=ENSG00000306715.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000306715.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000820372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000820372.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000306715;transcript_id=HG003_chrY_T0002006;gene_id=HG003_chrY_G0000755;Parent=HG003_chrY_T0002006;transcript_name=HG003_chrY_T0002006;gene_name=ENSG00000306715;ID=exon:HG003_chrY_T0002006:3;Name=ENSG00000306715;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	697768	704717	.	+	.	source_gene_common_name=RBMY2YP;source_gene=ENSG00000227633.1;gene_id=HG003_chrY_G0000756;gene_biotype=unprocessed_pseudogene;gene_name=RBMY2YP;gene_sources=liftoff;ID=HG003_chrY_G0000756;Name=RBMY2YP
HG003_chrY_random0000146	CAT	transcript	697768	704717	1000	+	.	source_transcript=ENST00000423333.1;source_transcript_name=RBMY2YP-201;source_gene=ENSG00000227633.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227633.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423333.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2YP;transcript_id=HG003_chrY_T0002007;gene_id=HG003_chrY_G0000756;Parent=HG003_chrY_G0000756;transcript_name=HG003_chrY_T0002007;gene_name=RBMY2YP;ID=HG003_chrY_T0002007;Name=RBMY2YP
HG003_chrY_random0000146	CAT	exon	697768	697880	.	+	.	source_transcript=ENST00000423333.1;source_transcript_name=RBMY2YP-201;source_gene=ENSG00000227633.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227633.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2YP;transcript_id=HG003_chrY_T0002007;gene_id=HG003_chrY_G0000756;Parent=HG003_chrY_T0002007;transcript_name=HG003_chrY_T0002007;gene_name=RBMY2YP;ID=exon:HG003_chrY_T0002007:0;Name=RBMY2YP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	697881	698292	.	+	.	source_transcript=ENST00000423333.1;source_transcript_name=RBMY2YP-201;source_gene=ENSG00000227633.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227633.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2YP;transcript_id=HG003_chrY_T0002007;gene_id=HG003_chrY_G0000756;Parent=HG003_chrY_T0002007;transcript_name=HG003_chrY_T0002007;gene_name=RBMY2YP;ID=intron:HG003_chrY_T0002007:0;Name=RBMY2YP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	698293	698394	.	+	.	source_transcript=ENST00000423333.1;source_transcript_name=RBMY2YP-201;source_gene=ENSG00000227633.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227633.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2YP;transcript_id=HG003_chrY_T0002007;gene_id=HG003_chrY_G0000756;Parent=HG003_chrY_T0002007;transcript_name=HG003_chrY_T0002007;gene_name=RBMY2YP;ID=exon:HG003_chrY_T0002007:1;Name=RBMY2YP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	698395	700782	.	+	.	source_transcript=ENST00000423333.1;source_transcript_name=RBMY2YP-201;source_gene=ENSG00000227633.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227633.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2YP;transcript_id=HG003_chrY_T0002007;gene_id=HG003_chrY_G0000756;Parent=HG003_chrY_T0002007;transcript_name=HG003_chrY_T0002007;gene_name=RBMY2YP;ID=intron:HG003_chrY_T0002007:1;Name=RBMY2YP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	700783	700964	.	+	.	source_transcript=ENST00000423333.1;source_transcript_name=RBMY2YP-201;source_gene=ENSG00000227633.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227633.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2YP;transcript_id=HG003_chrY_T0002007;gene_id=HG003_chrY_G0000756;Parent=HG003_chrY_T0002007;transcript_name=HG003_chrY_T0002007;gene_name=RBMY2YP;ID=exon:HG003_chrY_T0002007:2;Name=RBMY2YP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	700965	703708	.	+	.	source_transcript=ENST00000423333.1;source_transcript_name=RBMY2YP-201;source_gene=ENSG00000227633.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227633.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2YP;transcript_id=HG003_chrY_T0002007;gene_id=HG003_chrY_G0000756;Parent=HG003_chrY_T0002007;transcript_name=HG003_chrY_T0002007;gene_name=RBMY2YP;ID=intron:HG003_chrY_T0002007:2;Name=RBMY2YP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	703709	703819	.	+	.	source_transcript=ENST00000423333.1;source_transcript_name=RBMY2YP-201;source_gene=ENSG00000227633.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227633.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2YP;transcript_id=HG003_chrY_T0002007;gene_id=HG003_chrY_G0000756;Parent=HG003_chrY_T0002007;transcript_name=HG003_chrY_T0002007;gene_name=RBMY2YP;ID=exon:HG003_chrY_T0002007:3;Name=RBMY2YP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	703820	703900	.	+	.	source_transcript=ENST00000423333.1;source_transcript_name=RBMY2YP-201;source_gene=ENSG00000227633.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227633.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2YP;transcript_id=HG003_chrY_T0002007;gene_id=HG003_chrY_G0000756;Parent=HG003_chrY_T0002007;transcript_name=HG003_chrY_T0002007;gene_name=RBMY2YP;ID=intron:HG003_chrY_T0002007:3;Name=RBMY2YP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	703901	703989	.	+	.	source_transcript=ENST00000423333.1;source_transcript_name=RBMY2YP-201;source_gene=ENSG00000227633.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227633.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2YP;transcript_id=HG003_chrY_T0002007;gene_id=HG003_chrY_G0000756;Parent=HG003_chrY_T0002007;transcript_name=HG003_chrY_T0002007;gene_name=RBMY2YP;ID=exon:HG003_chrY_T0002007:4;Name=RBMY2YP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	703990	704402	.	+	.	source_transcript=ENST00000423333.1;source_transcript_name=RBMY2YP-201;source_gene=ENSG00000227633.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227633.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2YP;transcript_id=HG003_chrY_T0002007;gene_id=HG003_chrY_G0000756;Parent=HG003_chrY_T0002007;transcript_name=HG003_chrY_T0002007;gene_name=RBMY2YP;ID=intron:HG003_chrY_T0002007:4;Name=RBMY2YP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	704403	704717	.	+	.	source_transcript=ENST00000423333.1;source_transcript_name=RBMY2YP-201;source_gene=ENSG00000227633.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227633.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000423333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000423333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2YP;transcript_id=HG003_chrY_T0002007;gene_id=HG003_chrY_G0000756;Parent=HG003_chrY_T0002007;transcript_name=HG003_chrY_T0002007;gene_name=RBMY2YP;ID=exon:HG003_chrY_T0002007:5;Name=RBMY2YP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	738919	738993	.	+	.	source_gene_common_name=ENSG00000279115;source_gene=ENSG00000279115.2;alternative_source_transcripts=ENST00000624575.2;gene_id=HG003_chrY_G0000757;gene_biotype=processed_pseudogene;gene_name=ENSG00000279115;gene_sources=liftoff;ID=HG003_chrY_G0000757;Name=ENSG00000279115
HG003_chrY_random0000146	CAT	transcript	738919	738993	1000	+	.	source_transcript=ENST00000624491.2;source_transcript_name=ENST00000624491;source_gene=ENSG00000279115.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000279115.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000624491.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000624491.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000279115;alternative_source_transcripts=ENST00000624575.2;transcript_id=HG003_chrY_T0002008;gene_id=HG003_chrY_G0000757;Parent=HG003_chrY_G0000757;transcript_name=HG003_chrY_T0002008;gene_name=ENSG00000279115;ID=HG003_chrY_T0002008;Name=ENSG00000279115
HG003_chrY_random0000146	CAT	exon	738919	738993	.	+	.	source_transcript=ENST00000624491.2;source_transcript_name=ENST00000624491;source_gene=ENSG00000279115.2;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000279115.2;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000624491.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000624491.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000279115;alternative_source_transcripts=ENST00000624575.2;transcript_id=HG003_chrY_T0002008;gene_id=HG003_chrY_G0000757;Parent=HG003_chrY_T0002008;transcript_name=HG003_chrY_T0002008;gene_name=ENSG00000279115;ID=exon:HG003_chrY_T0002008:0;Name=ENSG00000279115;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	808715	825881	.	-	.	source_gene_common_name=ENSG00000293927;source_gene=ENSG00000293927.1;gene_id=HG003_chrY_G0000758;gene_biotype=lncRNA;gene_name=ENSG00000293927;gene_sources=liftoff;ID=HG003_chrY_G0000758;Name=ENSG00000293927
HG003_chrY_random0000146	CAT	transcript	808715	825881	1000	-	.	source_transcript=ENST00000719987.1;source_transcript_name=ENST00000719987;source_gene=ENSG00000293927.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293927.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000719987.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000719987.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293927;transcript_id=HG003_chrY_T0002009;gene_id=HG003_chrY_G0000758;Parent=HG003_chrY_G0000758;transcript_name=HG003_chrY_T0002009;gene_name=ENSG00000293927;ID=HG003_chrY_T0002009;Name=ENSG00000293927
HG003_chrY_random0000146	CAT	exon	808715	810037	.	-	.	source_transcript=ENST00000719987.1;source_transcript_name=ENST00000719987;source_gene=ENSG00000293927.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293927.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000719987.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000719987.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293927;transcript_id=HG003_chrY_T0002009;gene_id=HG003_chrY_G0000758;Parent=HG003_chrY_T0002009;transcript_name=HG003_chrY_T0002009;gene_name=ENSG00000293927;ID=exon:HG003_chrY_T0002009:0;Name=ENSG00000293927;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	810038	818073	.	-	.	source_transcript=ENST00000719987.1;source_transcript_name=ENST00000719987;source_gene=ENSG00000293927.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293927.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000719987.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000719987.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293927;transcript_id=HG003_chrY_T0002009;gene_id=HG003_chrY_G0000758;Parent=HG003_chrY_T0002009;transcript_name=HG003_chrY_T0002009;gene_name=ENSG00000293927;ID=intron:HG003_chrY_T0002009:0;Name=ENSG00000293927;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	818074	818242	.	-	.	source_transcript=ENST00000719987.1;source_transcript_name=ENST00000719987;source_gene=ENSG00000293927.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293927.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000719987.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000719987.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293927;transcript_id=HG003_chrY_T0002009;gene_id=HG003_chrY_G0000758;Parent=HG003_chrY_T0002009;transcript_name=HG003_chrY_T0002009;gene_name=ENSG00000293927;ID=exon:HG003_chrY_T0002009:1;Name=ENSG00000293927;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	818243	825782	.	-	.	source_transcript=ENST00000719987.1;source_transcript_name=ENST00000719987;source_gene=ENSG00000293927.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293927.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000719987.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000719987.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293927;transcript_id=HG003_chrY_T0002009;gene_id=HG003_chrY_G0000758;Parent=HG003_chrY_T0002009;transcript_name=HG003_chrY_T0002009;gene_name=ENSG00000293927;ID=intron:HG003_chrY_T0002009:1;Name=ENSG00000293927;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	825783	825881	.	-	.	source_transcript=ENST00000719987.1;source_transcript_name=ENST00000719987;source_gene=ENSG00000293927.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293927.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000719987.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000719987.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293927;transcript_id=HG003_chrY_T0002009;gene_id=HG003_chrY_G0000758;Parent=HG003_chrY_T0002009;transcript_name=HG003_chrY_T0002009;gene_name=ENSG00000293927;ID=exon:HG003_chrY_T0002009:2;Name=ENSG00000293927;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	818074	818242	.	-	.	source_gene_common_name=SEPTIN14P22;source_gene=ENSG00000248792.2;gene_id=HG003_chrY_G0000759;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=SEPTIN14P22;gene_sources=liftoff;ID=HG003_chrY_G0000759;Name=SEPTIN14P22
HG003_chrY_random0000146	CAT	transcript	818074	818242	1000	-	.	source_transcript=ENST00000509776.2;source_transcript_name=SEPTIN14P22-201;source_gene=ENSG00000248792.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000248792.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000509776.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000509776.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P22;transcript_id=HG003_chrY_T0002010;gene_id=HG003_chrY_G0000759;Parent=HG003_chrY_G0000759;transcript_name=HG003_chrY_T0002010;gene_name=SEPTIN14P22;ID=HG003_chrY_T0002010;Name=SEPTIN14P22
HG003_chrY_random0000146	CAT	exon	818074	818242	.	-	.	source_transcript=ENST00000509776.2;source_transcript_name=SEPTIN14P22-201;source_gene=ENSG00000248792.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000248792.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000509776.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000509776.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=SEPTIN14P22;transcript_id=HG003_chrY_T0002010;gene_id=HG003_chrY_G0000759;Parent=HG003_chrY_T0002010;transcript_name=HG003_chrY_T0002010;gene_name=SEPTIN14P22;ID=exon:HG003_chrY_T0002010:0;Name=SEPTIN14P22;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	820163	822967	.	+	.	source_gene_common_name=CICP2;source_gene=ENSG00000233740.1;gene_id=HG003_chrY_G0000760;gene_biotype=processed_pseudogene;gene_name=CICP2;gene_sources=liftoff,transMap;ID=HG003_chrY_G0000760;Name=CICP2
HG003_chrY_random0000146	CAT	transcript	820163	822967	1000	+	.	source_transcript=ENST00000420675.1;source_transcript_name=CICP2-201;source_gene=ENSG00000233740.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233740.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420675.1;alignment_mode=transMap;normalized_transcript_id=ENST00000420675.1;transcript_score=299.914;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP2;transcript_id=HG003_chrY_T0002011;gene_id=HG003_chrY_G0000760;Parent=HG003_chrY_G0000760;transcript_name=HG003_chrY_T0002011;gene_name=CICP2;ID=HG003_chrY_T0002011;Name=CICP2
HG003_chrY_random0000146	CAT	exon	820163	822430	.	+	.	source_transcript=ENST00000420675.1;source_transcript_name=CICP2-201;source_gene=ENSG00000233740.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233740.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420675.1;alignment_mode=transMap;normalized_transcript_id=ENST00000420675.1;transcript_score=299.914;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP2;transcript_id=HG003_chrY_T0002011;gene_id=HG003_chrY_G0000760;Parent=HG003_chrY_T0002011;transcript_name=HG003_chrY_T0002011;gene_name=CICP2;ID=exon:HG003_chrY_T0002011:0;Name=CICP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	822431	822840	.	+	.	source_transcript=ENST00000420675.1;source_transcript_name=CICP2-201;source_gene=ENSG00000233740.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233740.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420675.1;alignment_mode=transMap;normalized_transcript_id=ENST00000420675.1;transcript_score=299.914;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP2;transcript_id=HG003_chrY_T0002011;gene_id=HG003_chrY_G0000760;Parent=HG003_chrY_T0002011;transcript_name=HG003_chrY_T0002011;gene_name=CICP2;ID=intron:HG003_chrY_T0002011:0;Name=CICP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	822841	822967	.	+	.	source_transcript=ENST00000420675.1;source_transcript_name=CICP2-201;source_gene=ENSG00000233740.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233740.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420675.1;alignment_mode=transMap;normalized_transcript_id=ENST00000420675.1;transcript_score=299.914;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP2;transcript_id=HG003_chrY_T0002011;gene_id=HG003_chrY_G0000760;Parent=HG003_chrY_T0002011;transcript_name=HG003_chrY_T0002011;gene_name=CICP2;ID=exon:HG003_chrY_T0002011:1;Name=CICP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	820163	822967	1000	+	.	source_transcript=ENST00000420675.1;source_transcript_name=CICP2-201;source_gene=ENSG00000233740.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233740.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420675.1;transcript_score=299.914;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP2;transcript_id=HG003_chrY_T0002012;gene_id=HG003_chrY_G0000760;Parent=HG003_chrY_G0000760;transcript_name=HG003_chrY_T0002012;gene_name=CICP2;ID=HG003_chrY_T0002012;Name=CICP2
HG003_chrY_random0000146	CAT	exon	820163	821942	.	+	.	source_transcript=ENST00000420675.1;source_transcript_name=CICP2-201;source_gene=ENSG00000233740.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233740.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420675.1;transcript_score=299.914;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP2;transcript_id=HG003_chrY_T0002012;gene_id=HG003_chrY_G0000760;Parent=HG003_chrY_T0002012;transcript_name=HG003_chrY_T0002012;gene_name=CICP2;ID=exon:HG003_chrY_T0002012:0;Name=CICP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	821943	822008	.	+	.	source_transcript=ENST00000420675.1;source_transcript_name=CICP2-201;source_gene=ENSG00000233740.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233740.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420675.1;transcript_score=299.914;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP2;transcript_id=HG003_chrY_T0002012;gene_id=HG003_chrY_G0000760;Parent=HG003_chrY_T0002012;transcript_name=HG003_chrY_T0002012;gene_name=CICP2;ID=intron:HG003_chrY_T0002012:0;Name=CICP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	822009	822430	.	+	.	source_transcript=ENST00000420675.1;source_transcript_name=CICP2-201;source_gene=ENSG00000233740.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233740.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420675.1;transcript_score=299.914;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP2;transcript_id=HG003_chrY_T0002012;gene_id=HG003_chrY_G0000760;Parent=HG003_chrY_T0002012;transcript_name=HG003_chrY_T0002012;gene_name=CICP2;ID=exon:HG003_chrY_T0002012:1;Name=CICP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	822431	822840	.	+	.	source_transcript=ENST00000420675.1;source_transcript_name=CICP2-201;source_gene=ENSG00000233740.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233740.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420675.1;transcript_score=299.914;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP2;transcript_id=HG003_chrY_T0002012;gene_id=HG003_chrY_G0000760;Parent=HG003_chrY_T0002012;transcript_name=HG003_chrY_T0002012;gene_name=CICP2;ID=intron:HG003_chrY_T0002012:1;Name=CICP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	822841	822967	.	+	.	source_transcript=ENST00000420675.1;source_transcript_name=CICP2-201;source_gene=ENSG00000233740.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000233740.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000420675.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000420675.1;transcript_score=299.914;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CICP2;transcript_id=HG003_chrY_T0002012;gene_id=HG003_chrY_G0000760;Parent=HG003_chrY_T0002012;transcript_name=HG003_chrY_T0002012;gene_name=CICP2;ID=exon:HG003_chrY_T0002012:2;Name=CICP2;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	824278	825059	.	-	.	source_gene_common_name=LINC00265-2P;source_gene=ENSG00000224827.1;alternative_source_transcripts=ENST00000413372.1;gene_id=HG003_chrY_G0000761;gene_biotype=processed_pseudogene;gene_name=LINC00265-2P;gene_sources=liftoff;ID=HG003_chrY_G0000761;Name=LINC00265-2P
HG003_chrY_random0000146	CAT	transcript	824278	825059	1000	-	.	source_transcript=ENST00000413372.1;source_transcript_name=LINC00265-2P-201;source_gene=ENSG00000224827.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224827.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000413372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413372.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00265-2P;alternative_source_transcripts=ENST00000413372.1;transcript_id=HG003_chrY_T0002013;gene_id=HG003_chrY_G0000761;Parent=HG003_chrY_G0000761;transcript_name=HG003_chrY_T0002013;gene_name=LINC00265-2P;ID=HG003_chrY_T0002013;Name=LINC00265-2P
HG003_chrY_random0000146	CAT	exon	824278	825059	.	-	.	source_transcript=ENST00000413372.1;source_transcript_name=LINC00265-2P-201;source_gene=ENSG00000224827.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000224827.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000413372.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000413372.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=LINC00265-2P;alternative_source_transcripts=ENST00000413372.1;transcript_id=HG003_chrY_T0002013;gene_id=HG003_chrY_G0000761;Parent=HG003_chrY_T0002013;transcript_name=HG003_chrY_T0002013;gene_name=LINC00265-2P;ID=exon:HG003_chrY_T0002013:0;Name=LINC00265-2P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	862312	868470	.	+	.	source_gene_common_name=UBE2Q2P4Y;source_gene=ENSG00000225491.1;alternative_source_transcripts=ENST00000433767.1;gene_id=HG003_chrY_G0000762;gene_biotype=unprocessed_pseudogene;gene_name=UBE2Q2P4Y;gene_sources=liftoff;ID=HG003_chrY_G0000762;Name=UBE2Q2P4Y
HG003_chrY_random0000146	CAT	transcript	862312	868470	1000	+	.	source_transcript=ENST00000433767.1;source_transcript_name=UBE2Q2P4Y-201;source_gene=ENSG00000225491.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225491.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433767.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UBE2Q2P4Y;alternative_source_transcripts=ENST00000433767.1;transcript_id=HG003_chrY_T0002014;gene_id=HG003_chrY_G0000762;Parent=HG003_chrY_G0000762;transcript_name=HG003_chrY_T0002014;gene_name=UBE2Q2P4Y;ID=HG003_chrY_T0002014;Name=UBE2Q2P4Y
HG003_chrY_random0000146	CAT	exon	862312	862413	.	+	.	source_transcript=ENST00000433767.1;source_transcript_name=UBE2Q2P4Y-201;source_gene=ENSG00000225491.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225491.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433767.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UBE2Q2P4Y;alternative_source_transcripts=ENST00000433767.1;transcript_id=HG003_chrY_T0002014;gene_id=HG003_chrY_G0000762;Parent=HG003_chrY_T0002014;transcript_name=HG003_chrY_T0002014;gene_name=UBE2Q2P4Y;ID=exon:HG003_chrY_T0002014:0;Name=UBE2Q2P4Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	862414	868365	.	+	.	source_transcript=ENST00000433767.1;source_transcript_name=UBE2Q2P4Y-201;source_gene=ENSG00000225491.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225491.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433767.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UBE2Q2P4Y;alternative_source_transcripts=ENST00000433767.1;transcript_id=HG003_chrY_T0002014;gene_id=HG003_chrY_G0000762;Parent=HG003_chrY_T0002014;transcript_name=HG003_chrY_T0002014;gene_name=UBE2Q2P4Y;ID=intron:HG003_chrY_T0002014:0;Name=UBE2Q2P4Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	868366	868470	.	+	.	source_transcript=ENST00000433767.1;source_transcript_name=UBE2Q2P4Y-201;source_gene=ENSG00000225491.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000225491.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000433767.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000433767.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=UBE2Q2P4Y;alternative_source_transcripts=ENST00000433767.1;transcript_id=HG003_chrY_T0002014;gene_id=HG003_chrY_G0000762;Parent=HG003_chrY_T0002014;transcript_name=HG003_chrY_T0002014;gene_name=UBE2Q2P4Y;ID=exon:HG003_chrY_T0002014:1;Name=UBE2Q2P4Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	885716	891730	.	+	.	source_gene_common_name=GOLGA2P2Y;source_gene=ENSG00000239533.7;gene_id=HG003_chrY_G0000763;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=GOLGA2P2Y;gene_sources=liftoff;ID=HG003_chrY_G0000763;Name=GOLGA2P2Y
HG003_chrY_random0000146	CAT	transcript	885716	891730	1000	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_G0000763;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=HG003_chrY_T0002015;Name=GOLGA2P2Y
HG003_chrY_random0000146	CAT	exon	885716	885835	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:0;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	885836	886448	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002015:0;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	886449	886508	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:1;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	886509	886692	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002015:1;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	886693	886773	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:2;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	886774	887414	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002015:2;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	887415	887504	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:3;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	887505	887891	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002015:3;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	887892	888242	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:4;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	888243	888540	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002015:4;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	888541	888598	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:5;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	888599	889954	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002015:5;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	889955	890029	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:6;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	890030	890449	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002015:6;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	890450	890538	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:7;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	890539	890793	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002015:7;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	890794	890982	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:8;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	890983	891071	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002015:8;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	891072	891164	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:9;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	891165	891246	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002015:9;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	891247	891342	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:10;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	891343	891425	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002015:10;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	891426	891572	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:11;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	891573	891673	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002015:11;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	891674	891730	.	+	.	source_transcript=ENST00000423852.4;source_transcript_name=GOLGA2P2Y-201;source_gene=ENSG00000239533.7;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000239533.7;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000423852.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000423852.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002015;gene_id=HG003_chrY_G0000763;Parent=HG003_chrY_T0002015;transcript_name=HG003_chrY_T0002015;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002015:12;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	886466	891330	.	+	.	source_gene_common_name=GOLGA2P2Y;source_gene=ENSG00000291016.1;gene_id=HG003_chrY_G0000764;gene_biotype=lncRNA;gene_name=GOLGA2P2Y;gene_sources=liftoff;ID=HG003_chrY_G0000764;Name=GOLGA2P2Y
HG003_chrY_random0000146	CAT	transcript	886466	891330	1000	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_G0000764;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=HG003_chrY_T0002016;Name=GOLGA2P2Y
HG003_chrY_random0000146	CAT	exon	886466	886508	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002016:0;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	886509	886694	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002016:0;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	886695	886773	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002016:1;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	886774	887892	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002016:1;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	887893	888242	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002016:2;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	888243	888540	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002016:2;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	888541	888598	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002016:3;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	888599	889954	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002016:3;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	889955	890029	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002016:4;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	890030	890449	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002016:4;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	890450	890538	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002016:5;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	890539	890793	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002016:5;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	890794	890982	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002016:6;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	890983	891071	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002016:6;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	891072	891164	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002016:7;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	891165	891246	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=intron:HG003_chrY_T0002016:7;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	891247	891330	.	+	.	source_transcript=ENST00000398377.4;source_transcript_name=GOLGA2P2Y-202;source_gene=ENSG00000291016.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000291016.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000398377.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000398377.4;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA2P2Y;transcript_id=HG003_chrY_T0002016;gene_id=HG003_chrY_G0000764;Parent=HG003_chrY_T0002016;transcript_name=HG003_chrY_T0002016;gene_name=GOLGA2P2Y;ID=exon:HG003_chrY_T0002016:8;Name=GOLGA2P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	890081	890339	.	+	.	source_gene_common_name=RN7SL818P;source_gene=ENSG00000274234.1;alternative_source_transcripts=ENST00000485099.3;gene_id=HG003_chrY_G0000765;gene_biotype=misc_RNA;gene_name=RN7SL818P;gene_sources=liftoff;ID=HG003_chrY_G0000765;Name=RN7SL818P
HG003_chrY_random0000146	CAT	transcript	890081	890339	1000	+	.	source_transcript=ENST00000485099.3;source_transcript_name=RN7SL818P-201;source_gene=ENSG00000274234.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000274234.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000485099.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000485099.3;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RN7SL818P;alternative_source_transcripts=ENST00000485099.3;transcript_id=HG003_chrY_T0002017;gene_id=HG003_chrY_G0000765;Parent=HG003_chrY_G0000765;transcript_name=HG003_chrY_T0002017;gene_name=RN7SL818P;ID=HG003_chrY_T0002017;Name=RN7SL818P
HG003_chrY_random0000146	CAT	exon	890081	890339	.	+	.	source_transcript=ENST00000485099.3;source_transcript_name=RN7SL818P-201;source_gene=ENSG00000274234.1;source_gene_biotype=misc_RNA;original_gene_id=ENSG00000274234.1;gene_biotype=misc_RNA;transcript_biotype=misc_RNA;alignment_id=ENST00000485099.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000485099.3;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RN7SL818P;alternative_source_transcripts=ENST00000485099.3;transcript_id=HG003_chrY_T0002017;gene_id=HG003_chrY_G0000765;Parent=HG003_chrY_T0002017;transcript_name=HG003_chrY_T0002017;gene_name=RN7SL818P;ID=exon:HG003_chrY_T0002017:0;Name=RN7SL818P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	895167	904786	.	+	.	source_gene_common_name=ENSG00000284380;source_gene=ENSG00000284380.1;gene_id=HG003_chrY_G0000766;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000284380;gene_sources=liftoff;ID=HG003_chrY_G0000766;Name=ENSG00000284380
HG003_chrY_random0000146	CAT	transcript	895167	904786	1000	+	.	source_transcript=ENST00000623198.2;source_transcript_name=ENST00000623198;source_gene=ENSG00000284380.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000284380.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000623198.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000623198.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000284380;transcript_id=HG003_chrY_T0002018;gene_id=HG003_chrY_G0000766;Parent=HG003_chrY_G0000766;transcript_name=HG003_chrY_T0002018;gene_name=ENSG00000284380;ID=HG003_chrY_T0002018;Name=ENSG00000284380
HG003_chrY_random0000146	CAT	exon	895167	895251	.	+	.	source_transcript=ENST00000623198.2;source_transcript_name=ENST00000623198;source_gene=ENSG00000284380.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000284380.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000623198.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000623198.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000284380;transcript_id=HG003_chrY_T0002018;gene_id=HG003_chrY_G0000766;Parent=HG003_chrY_T0002018;transcript_name=HG003_chrY_T0002018;gene_name=ENSG00000284380;ID=exon:HG003_chrY_T0002018:0;Name=ENSG00000284380;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	895252	896672	.	+	.	source_transcript=ENST00000623198.2;source_transcript_name=ENST00000623198;source_gene=ENSG00000284380.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000284380.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000623198.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000623198.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000284380;transcript_id=HG003_chrY_T0002018;gene_id=HG003_chrY_G0000766;Parent=HG003_chrY_T0002018;transcript_name=HG003_chrY_T0002018;gene_name=ENSG00000284380;ID=intron:HG003_chrY_T0002018:0;Name=ENSG00000284380;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	896673	896822	.	+	.	source_transcript=ENST00000623198.2;source_transcript_name=ENST00000623198;source_gene=ENSG00000284380.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000284380.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000623198.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000623198.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000284380;transcript_id=HG003_chrY_T0002018;gene_id=HG003_chrY_G0000766;Parent=HG003_chrY_T0002018;transcript_name=HG003_chrY_T0002018;gene_name=ENSG00000284380;ID=exon:HG003_chrY_T0002018:1;Name=ENSG00000284380;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	896823	904624	.	+	.	source_transcript=ENST00000623198.2;source_transcript_name=ENST00000623198;source_gene=ENSG00000284380.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000284380.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000623198.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000623198.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000284380;transcript_id=HG003_chrY_T0002018;gene_id=HG003_chrY_G0000766;Parent=HG003_chrY_T0002018;transcript_name=HG003_chrY_T0002018;gene_name=ENSG00000284380;ID=intron:HG003_chrY_T0002018:1;Name=ENSG00000284380;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	904625	904786	.	+	.	source_transcript=ENST00000623198.2;source_transcript_name=ENST00000623198;source_gene=ENSG00000284380.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000284380.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000623198.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000623198.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000284380;transcript_id=HG003_chrY_T0002018;gene_id=HG003_chrY_G0000766;Parent=HG003_chrY_T0002018;transcript_name=HG003_chrY_T0002018;gene_name=ENSG00000284380;ID=exon:HG003_chrY_T0002018:2;Name=ENSG00000284380;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	895259	904845	.	+	.	source_gene_common_name=ENSG00000310249;source_gene=ENSG00000310249.1;gene_id=HG003_chrY_G0000767;gene_biotype=lncRNA;gene_name=ENSG00000310249;gene_sources=liftoff;ID=HG003_chrY_G0000767;Name=ENSG00000310249
HG003_chrY_random0000146	CAT	transcript	895259	904845	1000	+	.	source_transcript=ENST00000848543.1;source_transcript_name=ENST00000848543;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848543.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848543.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002019;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_G0000767;transcript_name=HG003_chrY_T0002019;gene_name=ENSG00000310249;ID=HG003_chrY_T0002019;Name=ENSG00000310249
HG003_chrY_random0000146	CAT	exon	895259	895626	.	+	.	source_transcript=ENST00000848543.1;source_transcript_name=ENST00000848543;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848543.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848543.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002019;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002019;transcript_name=HG003_chrY_T0002019;gene_name=ENSG00000310249;ID=exon:HG003_chrY_T0002019:0;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	895627	896672	.	+	.	source_transcript=ENST00000848543.1;source_transcript_name=ENST00000848543;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848543.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848543.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002019;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002019;transcript_name=HG003_chrY_T0002019;gene_name=ENSG00000310249;ID=intron:HG003_chrY_T0002019:0;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	896673	896822	.	+	.	source_transcript=ENST00000848543.1;source_transcript_name=ENST00000848543;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848543.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848543.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002019;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002019;transcript_name=HG003_chrY_T0002019;gene_name=ENSG00000310249;ID=exon:HG003_chrY_T0002019:1;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	896823	904624	.	+	.	source_transcript=ENST00000848543.1;source_transcript_name=ENST00000848543;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848543.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848543.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002019;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002019;transcript_name=HG003_chrY_T0002019;gene_name=ENSG00000310249;ID=intron:HG003_chrY_T0002019:1;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	904625	904845	.	+	.	source_transcript=ENST00000848543.1;source_transcript_name=ENST00000848543;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848543.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848543.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002019;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002019;transcript_name=HG003_chrY_T0002019;gene_name=ENSG00000310249;ID=exon:HG003_chrY_T0002019:2;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	895515	904845	1000	+	.	source_transcript=ENST00000848544.1;source_transcript_name=ENST00000848544;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848544.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002020;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_G0000767;transcript_name=HG003_chrY_T0002020;gene_name=ENSG00000310249;ID=HG003_chrY_T0002020;Name=ENSG00000310249
HG003_chrY_random0000146	CAT	exon	895515	895626	.	+	.	source_transcript=ENST00000848544.1;source_transcript_name=ENST00000848544;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002020;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002020;transcript_name=HG003_chrY_T0002020;gene_name=ENSG00000310249;ID=exon:HG003_chrY_T0002020:0;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	895627	896643	.	+	.	source_transcript=ENST00000848544.1;source_transcript_name=ENST00000848544;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002020;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002020;transcript_name=HG003_chrY_T0002020;gene_name=ENSG00000310249;ID=intron:HG003_chrY_T0002020:0;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	896644	896822	.	+	.	source_transcript=ENST00000848544.1;source_transcript_name=ENST00000848544;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002020;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002020;transcript_name=HG003_chrY_T0002020;gene_name=ENSG00000310249;ID=exon:HG003_chrY_T0002020:1;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	896823	904624	.	+	.	source_transcript=ENST00000848544.1;source_transcript_name=ENST00000848544;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002020;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002020;transcript_name=HG003_chrY_T0002020;gene_name=ENSG00000310249;ID=intron:HG003_chrY_T0002020:1;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	904625	904845	.	+	.	source_transcript=ENST00000848544.1;source_transcript_name=ENST00000848544;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848544.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848544.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002020;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002020;transcript_name=HG003_chrY_T0002020;gene_name=ENSG00000310249;ID=exon:HG003_chrY_T0002020:2;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	896643	904724	1000	+	.	source_transcript=ENST00000848545.1;source_transcript_name=ENST00000848545;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848545.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848545.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002021;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_G0000767;transcript_name=HG003_chrY_T0002021;gene_name=ENSG00000310249;ID=HG003_chrY_T0002021;Name=ENSG00000310249
HG003_chrY_random0000146	CAT	exon	896643	896822	.	+	.	source_transcript=ENST00000848545.1;source_transcript_name=ENST00000848545;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848545.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848545.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002021;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002021;transcript_name=HG003_chrY_T0002021;gene_name=ENSG00000310249;ID=exon:HG003_chrY_T0002021:0;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	896823	904624	.	+	.	source_transcript=ENST00000848545.1;source_transcript_name=ENST00000848545;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848545.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848545.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002021;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002021;transcript_name=HG003_chrY_T0002021;gene_name=ENSG00000310249;ID=intron:HG003_chrY_T0002021:0;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	904625	904724	.	+	.	source_transcript=ENST00000848545.1;source_transcript_name=ENST00000848545;source_gene=ENSG00000310249.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000310249.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000848545.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000848545.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000310249;transcript_id=HG003_chrY_T0002021;gene_id=HG003_chrY_G0000767;Parent=HG003_chrY_T0002021;transcript_name=HG003_chrY_T0002021;gene_name=ENSG00000310249;ID=exon:HG003_chrY_T0002021:1;Name=ENSG00000310249;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	909434	914793	.	+	.	source_gene_common_name=CSPG4P3Y;source_gene=ENSG00000172342.5;gene_id=HG003_chrY_G0000768;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=CSPG4P3Y;gene_sources=liftoff;ID=HG003_chrY_G0000768;Name=CSPG4P3Y
HG003_chrY_random0000146	CAT	transcript	909434	914793	1000	+	.	source_transcript=ENST00000418188.1;source_transcript_name=CSPG4P3Y-201;source_gene=ENSG00000172342.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000172342.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418188.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P3Y;transcript_id=HG003_chrY_T0002022;gene_id=HG003_chrY_G0000768;Parent=HG003_chrY_G0000768;transcript_name=HG003_chrY_T0002022;gene_name=CSPG4P3Y;ID=HG003_chrY_T0002022;Name=CSPG4P3Y
HG003_chrY_random0000146	CAT	exon	909434	909597	.	+	.	source_transcript=ENST00000418188.1;source_transcript_name=CSPG4P3Y-201;source_gene=ENSG00000172342.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000172342.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P3Y;transcript_id=HG003_chrY_T0002022;gene_id=HG003_chrY_G0000768;Parent=HG003_chrY_T0002022;transcript_name=HG003_chrY_T0002022;gene_name=CSPG4P3Y;ID=exon:HG003_chrY_T0002022:0;Name=CSPG4P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	909598	911233	.	+	.	source_transcript=ENST00000418188.1;source_transcript_name=CSPG4P3Y-201;source_gene=ENSG00000172342.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000172342.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P3Y;transcript_id=HG003_chrY_T0002022;gene_id=HG003_chrY_G0000768;Parent=HG003_chrY_T0002022;transcript_name=HG003_chrY_T0002022;gene_name=CSPG4P3Y;ID=intron:HG003_chrY_T0002022:0;Name=CSPG4P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	911234	914793	.	+	.	source_transcript=ENST00000418188.1;source_transcript_name=CSPG4P3Y-201;source_gene=ENSG00000172342.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000172342.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000418188.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418188.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P3Y;transcript_id=HG003_chrY_T0002022;gene_id=HG003_chrY_G0000768;Parent=HG003_chrY_T0002022;transcript_name=HG003_chrY_T0002022;gene_name=CSPG4P3Y;ID=exon:HG003_chrY_T0002022:1;Name=CSPG4P3Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	914071	917868	.	+	.	source_gene_common_name=CSPG4P2Y;source_gene=ENSG00000244231.1;gene_id=HG003_chrY_G0000769;gene_biotype=lncRNA;gene_name=CSPG4P2Y;gene_sources=liftoff;ID=HG003_chrY_G0000769;Name=CSPG4P2Y
HG003_chrY_random0000146	CAT	transcript	914071	917868	1000	+	.	source_transcript=ENST00000306853.1;source_transcript_name=CSPG4P2Y-201;source_gene=ENSG00000244231.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000244231.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000306853.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000306853.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P2Y;transcript_id=HG003_chrY_T0002023;gene_id=HG003_chrY_G0000769;Parent=HG003_chrY_G0000769;transcript_name=HG003_chrY_T0002023;gene_name=CSPG4P2Y;ID=HG003_chrY_T0002023;Name=CSPG4P2Y
HG003_chrY_random0000146	CAT	exon	914071	914793	.	+	.	source_transcript=ENST00000306853.1;source_transcript_name=CSPG4P2Y-201;source_gene=ENSG00000244231.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000244231.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000306853.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000306853.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P2Y;transcript_id=HG003_chrY_T0002023;gene_id=HG003_chrY_G0000769;Parent=HG003_chrY_T0002023;transcript_name=HG003_chrY_T0002023;gene_name=CSPG4P2Y;ID=exon:HG003_chrY_T0002023:0;Name=CSPG4P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	914794	917796	.	+	.	source_transcript=ENST00000306853.1;source_transcript_name=CSPG4P2Y-201;source_gene=ENSG00000244231.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000244231.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000306853.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000306853.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P2Y;transcript_id=HG003_chrY_T0002023;gene_id=HG003_chrY_G0000769;Parent=HG003_chrY_T0002023;transcript_name=HG003_chrY_T0002023;gene_name=CSPG4P2Y;ID=intron:HG003_chrY_T0002023:0;Name=CSPG4P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	917797	917868	.	+	.	source_transcript=ENST00000306853.1;source_transcript_name=CSPG4P2Y-201;source_gene=ENSG00000244231.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000244231.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000306853.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000306853.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CSPG4P2Y;transcript_id=HG003_chrY_T0002023;gene_id=HG003_chrY_G0000769;Parent=HG003_chrY_T0002023;transcript_name=HG003_chrY_T0002023;gene_name=CSPG4P2Y;ID=exon:HG003_chrY_T0002023:1;Name=CSPG4P2Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	917797	921986	.	+	.	source_gene_common_name=DNM1P24;source_gene=ENSG00000242854.1;gene_id=HG003_chrY_G0000770;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=DNM1P24;gene_sources=liftoff;ID=HG003_chrY_G0000770;Name=DNM1P24
HG003_chrY_random0000146	CAT	transcript	917797	921986	1000	+	.	source_transcript=ENST00000441091.1;source_transcript_name=DNM1P24-201;source_gene=ENSG00000242854.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242854.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441091.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441091.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DNM1P24;transcript_id=HG003_chrY_T0002024;gene_id=HG003_chrY_G0000770;Parent=HG003_chrY_G0000770;transcript_name=HG003_chrY_T0002024;gene_name=DNM1P24;ID=HG003_chrY_T0002024;Name=DNM1P24
HG003_chrY_random0000146	CAT	exon	917797	918028	.	+	.	source_transcript=ENST00000441091.1;source_transcript_name=DNM1P24-201;source_gene=ENSG00000242854.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242854.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441091.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441091.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DNM1P24;transcript_id=HG003_chrY_T0002024;gene_id=HG003_chrY_G0000770;Parent=HG003_chrY_T0002024;transcript_name=HG003_chrY_T0002024;gene_name=DNM1P24;ID=exon:HG003_chrY_T0002024:0;Name=DNM1P24;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	918029	918279	.	+	.	source_transcript=ENST00000441091.1;source_transcript_name=DNM1P24-201;source_gene=ENSG00000242854.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242854.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441091.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441091.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DNM1P24;transcript_id=HG003_chrY_T0002024;gene_id=HG003_chrY_G0000770;Parent=HG003_chrY_T0002024;transcript_name=HG003_chrY_T0002024;gene_name=DNM1P24;ID=intron:HG003_chrY_T0002024:0;Name=DNM1P24;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	918280	918484	.	+	.	source_transcript=ENST00000441091.1;source_transcript_name=DNM1P24-201;source_gene=ENSG00000242854.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242854.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441091.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441091.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DNM1P24;transcript_id=HG003_chrY_T0002024;gene_id=HG003_chrY_G0000770;Parent=HG003_chrY_T0002024;transcript_name=HG003_chrY_T0002024;gene_name=DNM1P24;ID=exon:HG003_chrY_T0002024:1;Name=DNM1P24;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	918485	921933	.	+	.	source_transcript=ENST00000441091.1;source_transcript_name=DNM1P24-201;source_gene=ENSG00000242854.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242854.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441091.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441091.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DNM1P24;transcript_id=HG003_chrY_T0002024;gene_id=HG003_chrY_G0000770;Parent=HG003_chrY_T0002024;transcript_name=HG003_chrY_T0002024;gene_name=DNM1P24;ID=intron:HG003_chrY_T0002024:1;Name=DNM1P24;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	921934	921986	.	+	.	source_transcript=ENST00000441091.1;source_transcript_name=DNM1P24-201;source_gene=ENSG00000242854.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000242854.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441091.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441091.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=DNM1P24;transcript_id=HG003_chrY_T0002024;gene_id=HG003_chrY_G0000770;Parent=HG003_chrY_T0002024;transcript_name=HG003_chrY_T0002024;gene_name=DNM1P24;ID=exon:HG003_chrY_T0002024:2;Name=DNM1P24;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	918231	918825	.	-	.	source_gene_common_name=ENSG00000230977;source_gene=ENSG00000230977.1;alternative_source_transcripts=ENST00000418278.1;gene_id=HG003_chrY_G0000771;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000230977;gene_sources=liftoff;ID=HG003_chrY_G0000771;Name=ENSG00000230977
HG003_chrY_random0000146	CAT	transcript	918231	918825	1000	-	.	source_transcript=ENST00000418278.1;source_transcript_name=ENST00000418278;source_gene=ENSG00000230977.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230977.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418278.1;transcript_score=199.832;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230977;alternative_source_transcripts=ENST00000418278.1;transcript_id=HG003_chrY_T0002025;gene_id=HG003_chrY_G0000771;Parent=HG003_chrY_G0000771;transcript_name=HG003_chrY_T0002025;gene_name=ENSG00000230977;ID=HG003_chrY_T0002025;Name=ENSG00000230977
HG003_chrY_random0000146	CAT	exon	918231	918825	.	-	.	source_transcript=ENST00000418278.1;source_transcript_name=ENST00000418278;source_gene=ENSG00000230977.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000230977.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418278.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418278.1;transcript_score=199.832;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230977;alternative_source_transcripts=ENST00000418278.1;transcript_id=HG003_chrY_T0002025;gene_id=HG003_chrY_G0000771;Parent=HG003_chrY_T0002025;transcript_name=HG003_chrY_T0002025;gene_name=ENSG00000230977;ID=exon:HG003_chrY_T0002025:0;Name=ENSG00000230977;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	924093	929677	.	-	.	source_gene_common_name=ENSG00000307363;source_gene=ENSG00000307363.1;gene_id=HG003_chrY_G0000772;gene_biotype=lncRNA;gene_name=ENSG00000307363;gene_sources=liftoff;ID=HG003_chrY_G0000772;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	transcript	924093	929504	1000	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002026;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002026;gene_name=ENSG00000307363;ID=HG003_chrY_T0002026;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	924093	926947	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002026;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002026;transcript_name=HG003_chrY_T0002026;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002026:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002026;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002026;transcript_name=HG003_chrY_T0002026;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002026:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002026;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002026;transcript_name=HG003_chrY_T0002026;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002026:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928311	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002026;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002026;transcript_name=HG003_chrY_T0002026;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002026:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928312	928372	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002026;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002026;transcript_name=HG003_chrY_T0002026;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002026:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928639	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002026;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002026;transcript_name=HG003_chrY_T0002026;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002026:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928640	929504	.	-	.	source_transcript=ENST00000825426.1;source_transcript_name=ENST00000825426;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825426.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825426.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002026;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002026;transcript_name=HG003_chrY_T0002026;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002026:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926380	929247	1000	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002027;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002027;gene_name=ENSG00000307363;ID=HG003_chrY_T0002027;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926380	926947	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002027;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002027;transcript_name=HG003_chrY_T0002027;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002027:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002027;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002027;transcript_name=HG003_chrY_T0002027;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002027:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002027;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002027;transcript_name=HG003_chrY_T0002027;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002027:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928294	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002027;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002027;transcript_name=HG003_chrY_T0002027;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002027:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928295	928372	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002027;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002027;transcript_name=HG003_chrY_T0002027;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002027:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928639	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002027;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002027;transcript_name=HG003_chrY_T0002027;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002027:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928640	929247	.	-	.	source_transcript=ENST00000825429.1;source_transcript_name=ENST00000825429;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825429.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825429.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002027;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002027;transcript_name=HG003_chrY_T0002027;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002027:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926781	927506	1000	-	.	source_transcript=ENST00000825441.1;source_transcript_name=ENST00000825441;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825441.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825441.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002028;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002028;gene_name=ENSG00000307363;ID=HG003_chrY_T0002028;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926781	926947	.	-	.	source_transcript=ENST00000825441.1;source_transcript_name=ENST00000825441;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825441.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002028;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002028;transcript_name=HG003_chrY_T0002028;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002028:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825441.1;source_transcript_name=ENST00000825441;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825441.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002028;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002028;transcript_name=HG003_chrY_T0002028;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002028:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927506	.	-	.	source_transcript=ENST00000825441.1;source_transcript_name=ENST00000825441;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825441.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825441.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002028;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002028;transcript_name=HG003_chrY_T0002028;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002028:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926782	928874	1000	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002029;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002029;gene_name=ENSG00000307363;ID=HG003_chrY_T0002029;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926782	926947	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002029;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002029;transcript_name=HG003_chrY_T0002029;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002029:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002029;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002029;transcript_name=HG003_chrY_T0002029;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002029:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002029;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002029;transcript_name=HG003_chrY_T0002029;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002029:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928133	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002029;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002029;transcript_name=HG003_chrY_T0002029;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002029:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928134	928372	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002029;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002029;transcript_name=HG003_chrY_T0002029;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002029:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928639	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002029;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002029;transcript_name=HG003_chrY_T0002029;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002029:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928640	928874	.	-	.	source_transcript=ENST00000825437.1;source_transcript_name=ENST00000825437;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825437.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825437.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002029;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002029;transcript_name=HG003_chrY_T0002029;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002029:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926782	928993	1000	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002030;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002030;gene_name=ENSG00000307363;ID=HG003_chrY_T0002030;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926782	926947	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002030;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002030;transcript_name=HG003_chrY_T0002030;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002030:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002030;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002030;transcript_name=HG003_chrY_T0002030;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002030:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002030;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002030;transcript_name=HG003_chrY_T0002030;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002030:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928294	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002030;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002030;transcript_name=HG003_chrY_T0002030;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002030:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928295	928372	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002030;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002030;transcript_name=HG003_chrY_T0002030;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002030:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928810	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002030;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002030;transcript_name=HG003_chrY_T0002030;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002030:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928811	928993	.	-	.	source_transcript=ENST00000825434.1;source_transcript_name=ENST00000825434;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825434.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825434.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002030;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002030;transcript_name=HG003_chrY_T0002030;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002030:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926782	929677	1000	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002031;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002031;gene_name=ENSG00000307363;ID=HG003_chrY_T0002031;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926782	926947	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002031;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002031;transcript_name=HG003_chrY_T0002031;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002031:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002031;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002031;transcript_name=HG003_chrY_T0002031;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002031:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002031;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002031;transcript_name=HG003_chrY_T0002031;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002031:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928133	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002031;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002031;transcript_name=HG003_chrY_T0002031;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002031:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928134	928372	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002031;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002031;transcript_name=HG003_chrY_T0002031;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002031:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	929596	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002031;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002031;transcript_name=HG003_chrY_T0002031;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002031:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	929597	929677	.	-	.	source_transcript=ENST00000825427.1;source_transcript_name=ENST00000825427;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825427.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825427.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002031;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002031;transcript_name=HG003_chrY_T0002031;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002031:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926782	928993	1000	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002032;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002032;gene_name=ENSG00000307363;ID=HG003_chrY_T0002032;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926782	926947	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002032;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002032;transcript_name=HG003_chrY_T0002032;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002032:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002032;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002032;transcript_name=HG003_chrY_T0002032;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002032:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002032;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002032;transcript_name=HG003_chrY_T0002032;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002032:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928311	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002032;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002032;transcript_name=HG003_chrY_T0002032;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002032:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928312	928372	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002032;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002032;transcript_name=HG003_chrY_T0002032;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002032:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928810	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002032;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002032;transcript_name=HG003_chrY_T0002032;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002032:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928811	928993	.	-	.	source_transcript=ENST00000825433.1;source_transcript_name=ENST00000825433;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825433.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825433.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002032;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002032;transcript_name=HG003_chrY_T0002032;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002032:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926782	928751	1000	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002033;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002033;gene_name=ENSG00000307363;ID=HG003_chrY_T0002033;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926782	926947	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002033;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002033;transcript_name=HG003_chrY_T0002033;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002033:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002033;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002033;transcript_name=HG003_chrY_T0002033;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002033:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002033;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002033;transcript_name=HG003_chrY_T0002033;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002033:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928311	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002033;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002033;transcript_name=HG003_chrY_T0002033;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002033:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928312	928372	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002033;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002033;transcript_name=HG003_chrY_T0002033;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002033:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928483	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002033;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002033;transcript_name=HG003_chrY_T0002033;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002033:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928484	928751	.	-	.	source_transcript=ENST00000825438.1;source_transcript_name=ENST00000825438;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825438.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825438.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002033;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002033;transcript_name=HG003_chrY_T0002033;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002033:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926782	929075	1000	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002034;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002034;gene_name=ENSG00000307363;ID=HG003_chrY_T0002034;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926782	926947	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002034;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002034;transcript_name=HG003_chrY_T0002034;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002034:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002034;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002034;transcript_name=HG003_chrY_T0002034;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002034:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002034;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002034;transcript_name=HG003_chrY_T0002034;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002034:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928133	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002034;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002034;transcript_name=HG003_chrY_T0002034;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002034:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928134	928372	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002034;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002034;transcript_name=HG003_chrY_T0002034;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002034:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928910	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002034;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002034;transcript_name=HG003_chrY_T0002034;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002034:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928911	929075	.	-	.	source_transcript=ENST00000825431.1;source_transcript_name=ENST00000825431;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825431.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825431.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002034;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002034;transcript_name=HG003_chrY_T0002034;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002034:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926782	929663	1000	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002035;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002035;gene_name=ENSG00000307363;ID=HG003_chrY_T0002035;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926782	926947	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002035;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002035;transcript_name=HG003_chrY_T0002035;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002035:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002035;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002035;transcript_name=HG003_chrY_T0002035;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002035:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002035;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002035;transcript_name=HG003_chrY_T0002035;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002035:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928311	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002035;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002035;transcript_name=HG003_chrY_T0002035;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002035:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928312	928372	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002035;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002035;transcript_name=HG003_chrY_T0002035;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002035:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	929596	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002035;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002035;transcript_name=HG003_chrY_T0002035;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002035:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	929597	929663	.	-	.	source_transcript=ENST00000825428.1;source_transcript_name=ENST00000825428;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825428.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825428.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002035;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002035;transcript_name=HG003_chrY_T0002035;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002035:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926782	928657	1000	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002036;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002036;gene_name=ENSG00000307363;ID=HG003_chrY_T0002036;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926782	926947	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002036;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002036;transcript_name=HG003_chrY_T0002036;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002036:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002036;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002036;transcript_name=HG003_chrY_T0002036;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002036:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002036;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002036;transcript_name=HG003_chrY_T0002036;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002036:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928294	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002036;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002036;transcript_name=HG003_chrY_T0002036;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002036:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928295	928372	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002036;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002036;transcript_name=HG003_chrY_T0002036;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002036:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928483	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002036;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002036;transcript_name=HG003_chrY_T0002036;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002036:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928484	928657	.	-	.	source_transcript=ENST00000825440.1;source_transcript_name=ENST00000825440;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825440.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825440.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002036;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002036;transcript_name=HG003_chrY_T0002036;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002036:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926782	928657	1000	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002037;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002037;gene_name=ENSG00000307363;ID=HG003_chrY_T0002037;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926782	926947	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002037;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002037;transcript_name=HG003_chrY_T0002037;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002037:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002037;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002037;transcript_name=HG003_chrY_T0002037;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002037:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002037;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002037;transcript_name=HG003_chrY_T0002037;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002037:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928133	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002037;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002037;transcript_name=HG003_chrY_T0002037;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002037:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928134	928372	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002037;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002037;transcript_name=HG003_chrY_T0002037;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002037:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928483	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002037;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002037;transcript_name=HG003_chrY_T0002037;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002037:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928484	928657	.	-	.	source_transcript=ENST00000825439.1;source_transcript_name=ENST00000825439;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825439.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825439.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002037;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002037;transcript_name=HG003_chrY_T0002037;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002037:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926782	928972	1000	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002038;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002038;gene_name=ENSG00000307363;ID=HG003_chrY_T0002038;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926782	926947	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002038;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002038;transcript_name=HG003_chrY_T0002038;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002038:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002038;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002038;transcript_name=HG003_chrY_T0002038;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002038:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002038;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002038;transcript_name=HG003_chrY_T0002038;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002038:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928133	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002038;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002038;transcript_name=HG003_chrY_T0002038;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002038:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928134	928372	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002038;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002038;transcript_name=HG003_chrY_T0002038;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002038:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928810	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002038;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002038;transcript_name=HG003_chrY_T0002038;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002038:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928811	928972	.	-	.	source_transcript=ENST00000825435.1;source_transcript_name=ENST00000825435;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825435.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825435.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002038;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002038;transcript_name=HG003_chrY_T0002038;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002038:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926782	929027	1000	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002039;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002039;gene_name=ENSG00000307363;ID=HG003_chrY_T0002039;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926782	926947	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002039;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002039;transcript_name=HG003_chrY_T0002039;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002039:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002039;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002039;transcript_name=HG003_chrY_T0002039;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002039:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002039;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002039;transcript_name=HG003_chrY_T0002039;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002039:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928294	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002039;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002039;transcript_name=HG003_chrY_T0002039;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002039:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928295	928372	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002039;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002039;transcript_name=HG003_chrY_T0002039;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002039:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928910	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002039;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002039;transcript_name=HG003_chrY_T0002039;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002039:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928911	929027	.	-	.	source_transcript=ENST00000825432.1;source_transcript_name=ENST00000825432;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825432.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825432.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002039;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002039;transcript_name=HG003_chrY_T0002039;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002039:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926782	929083	1000	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002040;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002040;gene_name=ENSG00000307363;ID=HG003_chrY_T0002040;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926782	926947	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002040;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002040;transcript_name=HG003_chrY_T0002040;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002040:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002040;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002040;transcript_name=HG003_chrY_T0002040;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002040:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002040;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002040;transcript_name=HG003_chrY_T0002040;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002040:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928311	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002040;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002040;transcript_name=HG003_chrY_T0002040;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002040:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928312	928372	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002040;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002040;transcript_name=HG003_chrY_T0002040;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002040:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928910	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002040;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002040;transcript_name=HG003_chrY_T0002040;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002040:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928911	929083	.	-	.	source_transcript=ENST00000825430.1;source_transcript_name=ENST00000825430;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825430.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825430.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002040;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002040;transcript_name=HG003_chrY_T0002040;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002040:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	926784	928913	1000	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002041;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_G0000772;transcript_name=HG003_chrY_T0002041;gene_name=ENSG00000307363;ID=HG003_chrY_T0002041;Name=ENSG00000307363
HG003_chrY_random0000146	CAT	exon	926784	926947	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002041;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002041;transcript_name=HG003_chrY_T0002041;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002041:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926948	927156	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002041;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002041;transcript_name=HG003_chrY_T0002041;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002041:0;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927157	927271	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002041;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002041;transcript_name=HG003_chrY_T0002041;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002041:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927272	928133	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002041;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002041;transcript_name=HG003_chrY_T0002041;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002041:1;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928134	928372	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002041;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002041;transcript_name=HG003_chrY_T0002041;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002041:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928724	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002041;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002041;transcript_name=HG003_chrY_T0002041;gene_name=ENSG00000307363;ID=intron:HG003_chrY_T0002041:2;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928725	928913	.	-	.	source_transcript=ENST00000825436.1;source_transcript_name=ENST00000825436;source_gene=ENSG00000307363.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000307363.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000825436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000825436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000307363;transcript_id=HG003_chrY_T0002041;gene_id=HG003_chrY_G0000772;Parent=HG003_chrY_T0002041;transcript_name=HG003_chrY_T0002041;gene_name=ENSG00000307363;ID=exon:HG003_chrY_T0002041:3;Name=ENSG00000307363;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	926815	933122	.	-	.	source_gene_common_name=GOLGA6L16P;source_gene=ENSG00000197092.5;gene_id=HG003_chrY_G0000773;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=GOLGA6L16P;gene_sources=liftoff;ID=HG003_chrY_G0000773;Name=GOLGA6L16P
HG003_chrY_random0000146	CAT	transcript	926815	933122	1000	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_G0000773;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=HG003_chrY_T0002042;Name=GOLGA6L16P
HG003_chrY_random0000146	CAT	exon	926815	926946	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0002042:0;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	926947	927155	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0002042:0;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	927156	927279	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0002042:1;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	927280	928301	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0002042:1;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928302	928372	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0002042:2;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	928373	928639	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0002042:2;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	928640	929209	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0002042:3;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	929210	929614	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0002042:3;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	929615	929671	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0002042:4;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	929672	930327	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0002042:4;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	930328	930408	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0002042:5;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	930409	930593	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0002042:5;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	930594	930653	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0002042:6;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	930654	931275	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0002042:6;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	931276	931395	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0002042:7;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	931396	933038	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=intron:HG003_chrY_T0002042:7;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	933039	933122	.	-	.	source_transcript=ENST00000441780.1;source_transcript_name=GOLGA6L16P-201;source_gene=ENSG00000197092.5;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000197092.5;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000441780.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000441780.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=GOLGA6L16P;transcript_id=HG003_chrY_T0002042;gene_id=HG003_chrY_G0000773;Parent=HG003_chrY_T0002042;transcript_name=HG003_chrY_T0002042;gene_name=GOLGA6L16P;ID=exon:HG003_chrY_T0002042:8;Name=GOLGA6L16P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	943465	958953	.	-	.	source_gene_common_name=ENSG00000235981;source_gene=ENSG00000235981.2;gene_id=HG003_chrY_G0000774;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000235981;gene_sources=liftoff;ID=HG003_chrY_G0000774;Name=ENSG00000235981
HG003_chrY_random0000146	CAT	transcript	943465	958953	1000	-	.	source_transcript=ENST00000445264.2;source_transcript_name=ENST00000445264;source_gene=ENSG00000235981.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235981.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445264.2;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235981;transcript_id=HG003_chrY_T0002043;gene_id=HG003_chrY_G0000774;Parent=HG003_chrY_G0000774;transcript_name=HG003_chrY_T0002043;gene_name=ENSG00000235981;ID=HG003_chrY_T0002043;Name=ENSG00000235981
HG003_chrY_random0000146	CAT	exon	943465	943560	.	-	.	source_transcript=ENST00000445264.2;source_transcript_name=ENST00000445264;source_gene=ENSG00000235981.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235981.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235981;transcript_id=HG003_chrY_T0002043;gene_id=HG003_chrY_G0000774;Parent=HG003_chrY_T0002043;transcript_name=HG003_chrY_T0002043;gene_name=ENSG00000235981;ID=exon:HG003_chrY_T0002043:0;Name=ENSG00000235981;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	943561	944289	.	-	.	source_transcript=ENST00000445264.2;source_transcript_name=ENST00000445264;source_gene=ENSG00000235981.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235981.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235981;transcript_id=HG003_chrY_T0002043;gene_id=HG003_chrY_G0000774;Parent=HG003_chrY_T0002043;transcript_name=HG003_chrY_T0002043;gene_name=ENSG00000235981;ID=intron:HG003_chrY_T0002043:0;Name=ENSG00000235981;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	944290	944338	.	-	.	source_transcript=ENST00000445264.2;source_transcript_name=ENST00000445264;source_gene=ENSG00000235981.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235981.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235981;transcript_id=HG003_chrY_T0002043;gene_id=HG003_chrY_G0000774;Parent=HG003_chrY_T0002043;transcript_name=HG003_chrY_T0002043;gene_name=ENSG00000235981;ID=exon:HG003_chrY_T0002043:1;Name=ENSG00000235981;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	944339	950845	.	-	.	source_transcript=ENST00000445264.2;source_transcript_name=ENST00000445264;source_gene=ENSG00000235981.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235981.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235981;transcript_id=HG003_chrY_T0002043;gene_id=HG003_chrY_G0000774;Parent=HG003_chrY_T0002043;transcript_name=HG003_chrY_T0002043;gene_name=ENSG00000235981;ID=intron:HG003_chrY_T0002043:1;Name=ENSG00000235981;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	950846	950904	.	-	.	source_transcript=ENST00000445264.2;source_transcript_name=ENST00000445264;source_gene=ENSG00000235981.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235981.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235981;transcript_id=HG003_chrY_T0002043;gene_id=HG003_chrY_G0000774;Parent=HG003_chrY_T0002043;transcript_name=HG003_chrY_T0002043;gene_name=ENSG00000235981;ID=exon:HG003_chrY_T0002043:2;Name=ENSG00000235981;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	950905	955192	.	-	.	source_transcript=ENST00000445264.2;source_transcript_name=ENST00000445264;source_gene=ENSG00000235981.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235981.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235981;transcript_id=HG003_chrY_T0002043;gene_id=HG003_chrY_G0000774;Parent=HG003_chrY_T0002043;transcript_name=HG003_chrY_T0002043;gene_name=ENSG00000235981;ID=intron:HG003_chrY_T0002043:2;Name=ENSG00000235981;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	955193	955277	.	-	.	source_transcript=ENST00000445264.2;source_transcript_name=ENST00000445264;source_gene=ENSG00000235981.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235981.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235981;transcript_id=HG003_chrY_T0002043;gene_id=HG003_chrY_G0000774;Parent=HG003_chrY_T0002043;transcript_name=HG003_chrY_T0002043;gene_name=ENSG00000235981;ID=exon:HG003_chrY_T0002043:3;Name=ENSG00000235981;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	955278	956370	.	-	.	source_transcript=ENST00000445264.2;source_transcript_name=ENST00000445264;source_gene=ENSG00000235981.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235981.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235981;transcript_id=HG003_chrY_T0002043;gene_id=HG003_chrY_G0000774;Parent=HG003_chrY_T0002043;transcript_name=HG003_chrY_T0002043;gene_name=ENSG00000235981;ID=intron:HG003_chrY_T0002043:3;Name=ENSG00000235981;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	956371	956455	.	-	.	source_transcript=ENST00000445264.2;source_transcript_name=ENST00000445264;source_gene=ENSG00000235981.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235981.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235981;transcript_id=HG003_chrY_T0002043;gene_id=HG003_chrY_G0000774;Parent=HG003_chrY_T0002043;transcript_name=HG003_chrY_T0002043;gene_name=ENSG00000235981;ID=exon:HG003_chrY_T0002043:4;Name=ENSG00000235981;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	956456	958815	.	-	.	source_transcript=ENST00000445264.2;source_transcript_name=ENST00000445264;source_gene=ENSG00000235981.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235981.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235981;transcript_id=HG003_chrY_T0002043;gene_id=HG003_chrY_G0000774;Parent=HG003_chrY_T0002043;transcript_name=HG003_chrY_T0002043;gene_name=ENSG00000235981;ID=intron:HG003_chrY_T0002043:4;Name=ENSG00000235981;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	958816	958953	.	-	.	source_transcript=ENST00000445264.2;source_transcript_name=ENST00000445264;source_gene=ENSG00000235981.2;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000235981.2;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000445264.2;alignment_mode=liftoff;normalized_transcript_id=ENST00000445264.2;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000235981;transcript_id=HG003_chrY_T0002043;gene_id=HG003_chrY_G0000774;Parent=HG003_chrY_T0002043;transcript_name=HG003_chrY_T0002043;gene_name=ENSG00000235981;ID=exon:HG003_chrY_T0002043:5;Name=ENSG00000235981;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	947945	963925	.	-	.	source_gene_common_name=ENSG00000299288;source_gene=ENSG00000299288.1;gene_id=HG003_chrY_G0000775;gene_biotype=lncRNA;gene_name=ENSG00000299288;gene_sources=liftoff;ID=HG003_chrY_G0000775;Name=ENSG00000299288
HG003_chrY_random0000146	CAT	transcript	947945	963370	1000	-	.	source_transcript=ENST00000762327.1;source_transcript_name=ENST00000762327;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762327.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002044;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_G0000775;transcript_name=HG003_chrY_T0002044;gene_name=ENSG00000299288;ID=HG003_chrY_T0002044;Name=ENSG00000299288
HG003_chrY_random0000146	CAT	exon	947945	948963	.	-	.	source_transcript=ENST00000762327.1;source_transcript_name=ENST00000762327;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002044;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002044;transcript_name=HG003_chrY_T0002044;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002044:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	948964	955192	.	-	.	source_transcript=ENST00000762327.1;source_transcript_name=ENST00000762327;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002044;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002044;transcript_name=HG003_chrY_T0002044;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002044:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	955193	955277	.	-	.	source_transcript=ENST00000762327.1;source_transcript_name=ENST00000762327;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002044;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002044;transcript_name=HG003_chrY_T0002044;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002044:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	955278	956370	.	-	.	source_transcript=ENST00000762327.1;source_transcript_name=ENST00000762327;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002044;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002044;transcript_name=HG003_chrY_T0002044;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002044:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	956371	956455	.	-	.	source_transcript=ENST00000762327.1;source_transcript_name=ENST00000762327;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002044;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002044;transcript_name=HG003_chrY_T0002044;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002044:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	956456	958831	.	-	.	source_transcript=ENST00000762327.1;source_transcript_name=ENST00000762327;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002044;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002044;transcript_name=HG003_chrY_T0002044;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002044:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	958832	958953	.	-	.	source_transcript=ENST00000762327.1;source_transcript_name=ENST00000762327;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002044;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002044;transcript_name=HG003_chrY_T0002044;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002044:3;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	958954	962909	.	-	.	source_transcript=ENST00000762327.1;source_transcript_name=ENST00000762327;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002044;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002044;transcript_name=HG003_chrY_T0002044;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002044:3;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	962910	963370	.	-	.	source_transcript=ENST00000762327.1;source_transcript_name=ENST00000762327;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762327.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762327.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002044;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002044;transcript_name=HG003_chrY_T0002044;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002044:4;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	947945	963145	1000	-	.	source_transcript=ENST00000762332.1;source_transcript_name=ENST00000762332;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762332.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002045;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_G0000775;transcript_name=HG003_chrY_T0002045;gene_name=ENSG00000299288;ID=HG003_chrY_T0002045;Name=ENSG00000299288
HG003_chrY_random0000146	CAT	exon	947945	948963	.	-	.	source_transcript=ENST00000762332.1;source_transcript_name=ENST00000762332;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002045;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002045;transcript_name=HG003_chrY_T0002045;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002045:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	948964	955192	.	-	.	source_transcript=ENST00000762332.1;source_transcript_name=ENST00000762332;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002045;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002045;transcript_name=HG003_chrY_T0002045;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002045:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	955193	955277	.	-	.	source_transcript=ENST00000762332.1;source_transcript_name=ENST00000762332;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002045;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002045;transcript_name=HG003_chrY_T0002045;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002045:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	955278	958815	.	-	.	source_transcript=ENST00000762332.1;source_transcript_name=ENST00000762332;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002045;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002045;transcript_name=HG003_chrY_T0002045;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002045:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	958816	958953	.	-	.	source_transcript=ENST00000762332.1;source_transcript_name=ENST00000762332;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002045;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002045;transcript_name=HG003_chrY_T0002045;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002045:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	958954	962909	.	-	.	source_transcript=ENST00000762332.1;source_transcript_name=ENST00000762332;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002045;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002045;transcript_name=HG003_chrY_T0002045;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002045:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	962910	963145	.	-	.	source_transcript=ENST00000762332.1;source_transcript_name=ENST00000762332;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762332.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762332.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002045;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002045;transcript_name=HG003_chrY_T0002045;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002045:3;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	948528	963925	1000	-	.	source_transcript=ENST00000762329.1;source_transcript_name=ENST00000762329;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762329.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002046;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_G0000775;transcript_name=HG003_chrY_T0002046;gene_name=ENSG00000299288;ID=HG003_chrY_T0002046;Name=ENSG00000299288
HG003_chrY_random0000146	CAT	exon	948528	948963	.	-	.	source_transcript=ENST00000762329.1;source_transcript_name=ENST00000762329;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002046;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002046;transcript_name=HG003_chrY_T0002046;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002046:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	948964	955192	.	-	.	source_transcript=ENST00000762329.1;source_transcript_name=ENST00000762329;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002046;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002046;transcript_name=HG003_chrY_T0002046;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002046:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	955193	955277	.	-	.	source_transcript=ENST00000762329.1;source_transcript_name=ENST00000762329;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002046;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002046;transcript_name=HG003_chrY_T0002046;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002046:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	955278	958815	.	-	.	source_transcript=ENST00000762329.1;source_transcript_name=ENST00000762329;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002046;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002046;transcript_name=HG003_chrY_T0002046;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002046:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	958816	958953	.	-	.	source_transcript=ENST00000762329.1;source_transcript_name=ENST00000762329;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002046;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002046;transcript_name=HG003_chrY_T0002046;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002046:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	958954	963820	.	-	.	source_transcript=ENST00000762329.1;source_transcript_name=ENST00000762329;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002046;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002046;transcript_name=HG003_chrY_T0002046;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002046:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	963821	963925	.	-	.	source_transcript=ENST00000762329.1;source_transcript_name=ENST00000762329;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762329.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762329.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002046;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002046;transcript_name=HG003_chrY_T0002046;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002046:3;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	948528	963925	1000	-	.	source_transcript=ENST00000762328.1;source_transcript_name=ENST00000762328;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762328.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002047;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_G0000775;transcript_name=HG003_chrY_T0002047;gene_name=ENSG00000299288;ID=HG003_chrY_T0002047;Name=ENSG00000299288
HG003_chrY_random0000146	CAT	exon	948528	948963	.	-	.	source_transcript=ENST00000762328.1;source_transcript_name=ENST00000762328;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002047;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002047;transcript_name=HG003_chrY_T0002047;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002047:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	948964	955192	.	-	.	source_transcript=ENST00000762328.1;source_transcript_name=ENST00000762328;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002047;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002047;transcript_name=HG003_chrY_T0002047;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002047:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	955193	955277	.	-	.	source_transcript=ENST00000762328.1;source_transcript_name=ENST00000762328;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002047;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002047;transcript_name=HG003_chrY_T0002047;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002047:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	955278	956370	.	-	.	source_transcript=ENST00000762328.1;source_transcript_name=ENST00000762328;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002047;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002047;transcript_name=HG003_chrY_T0002047;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002047:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	956371	956455	.	-	.	source_transcript=ENST00000762328.1;source_transcript_name=ENST00000762328;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002047;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002047;transcript_name=HG003_chrY_T0002047;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002047:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	956456	958831	.	-	.	source_transcript=ENST00000762328.1;source_transcript_name=ENST00000762328;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002047;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002047;transcript_name=HG003_chrY_T0002047;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002047:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	958832	958953	.	-	.	source_transcript=ENST00000762328.1;source_transcript_name=ENST00000762328;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002047;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002047;transcript_name=HG003_chrY_T0002047;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002047:3;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	958954	962909	.	-	.	source_transcript=ENST00000762328.1;source_transcript_name=ENST00000762328;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002047;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002047;transcript_name=HG003_chrY_T0002047;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002047:3;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	962910	963072	.	-	.	source_transcript=ENST00000762328.1;source_transcript_name=ENST00000762328;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002047;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002047;transcript_name=HG003_chrY_T0002047;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002047:4;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	963073	963820	.	-	.	source_transcript=ENST00000762328.1;source_transcript_name=ENST00000762328;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002047;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002047;transcript_name=HG003_chrY_T0002047;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002047:4;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	963821	963925	.	-	.	source_transcript=ENST00000762328.1;source_transcript_name=ENST00000762328;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762328.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762328.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002047;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002047;transcript_name=HG003_chrY_T0002047;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002047:5;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	948528	963925	1000	-	.	source_transcript=ENST00000762330.1;source_transcript_name=ENST00000762330;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762330.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002048;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_G0000775;transcript_name=HG003_chrY_T0002048;gene_name=ENSG00000299288;ID=HG003_chrY_T0002048;Name=ENSG00000299288
HG003_chrY_random0000146	CAT	exon	948528	948963	.	-	.	source_transcript=ENST00000762330.1;source_transcript_name=ENST00000762330;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002048;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002048;transcript_name=HG003_chrY_T0002048;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002048:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	948964	955192	.	-	.	source_transcript=ENST00000762330.1;source_transcript_name=ENST00000762330;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002048;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002048;transcript_name=HG003_chrY_T0002048;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002048:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	955193	955277	.	-	.	source_transcript=ENST00000762330.1;source_transcript_name=ENST00000762330;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002048;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002048;transcript_name=HG003_chrY_T0002048;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002048:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	955278	956370	.	-	.	source_transcript=ENST00000762330.1;source_transcript_name=ENST00000762330;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002048;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002048;transcript_name=HG003_chrY_T0002048;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002048:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	956371	956455	.	-	.	source_transcript=ENST00000762330.1;source_transcript_name=ENST00000762330;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002048;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002048;transcript_name=HG003_chrY_T0002048;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002048:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	956456	958815	.	-	.	source_transcript=ENST00000762330.1;source_transcript_name=ENST00000762330;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002048;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002048;transcript_name=HG003_chrY_T0002048;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002048:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	958816	958953	.	-	.	source_transcript=ENST00000762330.1;source_transcript_name=ENST00000762330;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002048;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002048;transcript_name=HG003_chrY_T0002048;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002048:3;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	958954	962909	.	-	.	source_transcript=ENST00000762330.1;source_transcript_name=ENST00000762330;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002048;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002048;transcript_name=HG003_chrY_T0002048;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002048:3;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	962910	963072	.	-	.	source_transcript=ENST00000762330.1;source_transcript_name=ENST00000762330;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002048;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002048;transcript_name=HG003_chrY_T0002048;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002048:4;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	963073	963820	.	-	.	source_transcript=ENST00000762330.1;source_transcript_name=ENST00000762330;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002048;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002048;transcript_name=HG003_chrY_T0002048;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002048:4;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	963821	963925	.	-	.	source_transcript=ENST00000762330.1;source_transcript_name=ENST00000762330;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762330.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762330.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002048;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002048;transcript_name=HG003_chrY_T0002048;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002048:5;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	948541	963918	1000	-	.	source_transcript=ENST00000762331.1;source_transcript_name=ENST00000762331;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762331.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002049;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_G0000775;transcript_name=HG003_chrY_T0002049;gene_name=ENSG00000299288;ID=HG003_chrY_T0002049;Name=ENSG00000299288
HG003_chrY_random0000146	CAT	exon	948541	948963	.	-	.	source_transcript=ENST00000762331.1;source_transcript_name=ENST00000762331;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002049;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002049;transcript_name=HG003_chrY_T0002049;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002049:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	948964	955192	.	-	.	source_transcript=ENST00000762331.1;source_transcript_name=ENST00000762331;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002049;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002049;transcript_name=HG003_chrY_T0002049;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002049:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	955193	955277	.	-	.	source_transcript=ENST00000762331.1;source_transcript_name=ENST00000762331;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002049;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002049;transcript_name=HG003_chrY_T0002049;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002049:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	955278	958815	.	-	.	source_transcript=ENST00000762331.1;source_transcript_name=ENST00000762331;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002049;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002049;transcript_name=HG003_chrY_T0002049;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002049:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	958816	958953	.	-	.	source_transcript=ENST00000762331.1;source_transcript_name=ENST00000762331;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002049;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002049;transcript_name=HG003_chrY_T0002049;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002049:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	958954	962909	.	-	.	source_transcript=ENST00000762331.1;source_transcript_name=ENST00000762331;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002049;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002049;transcript_name=HG003_chrY_T0002049;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002049:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	962910	963072	.	-	.	source_transcript=ENST00000762331.1;source_transcript_name=ENST00000762331;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002049;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002049;transcript_name=HG003_chrY_T0002049;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002049:3;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	963073	963820	.	-	.	source_transcript=ENST00000762331.1;source_transcript_name=ENST00000762331;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002049;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002049;transcript_name=HG003_chrY_T0002049;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002049:3;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	963821	963918	.	-	.	source_transcript=ENST00000762331.1;source_transcript_name=ENST00000762331;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762331.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002049;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002049;transcript_name=HG003_chrY_T0002049;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002049:4;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	948541	963321	1000	-	.	source_transcript=ENST00000762333.1;source_transcript_name=ENST00000762333;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762333.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002050;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_G0000775;transcript_name=HG003_chrY_T0002050;gene_name=ENSG00000299288;ID=HG003_chrY_T0002050;Name=ENSG00000299288
HG003_chrY_random0000146	CAT	exon	948541	948963	.	-	.	source_transcript=ENST00000762333.1;source_transcript_name=ENST00000762333;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002050;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002050;transcript_name=HG003_chrY_T0002050;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002050:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	948964	955192	.	-	.	source_transcript=ENST00000762333.1;source_transcript_name=ENST00000762333;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002050;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002050;transcript_name=HG003_chrY_T0002050;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002050:0;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	955193	955277	.	-	.	source_transcript=ENST00000762333.1;source_transcript_name=ENST00000762333;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002050;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002050;transcript_name=HG003_chrY_T0002050;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002050:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	955278	958831	.	-	.	source_transcript=ENST00000762333.1;source_transcript_name=ENST00000762333;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002050;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002050;transcript_name=HG003_chrY_T0002050;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002050:1;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	958832	958953	.	-	.	source_transcript=ENST00000762333.1;source_transcript_name=ENST00000762333;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002050;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002050;transcript_name=HG003_chrY_T0002050;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002050:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	958954	962909	.	-	.	source_transcript=ENST00000762333.1;source_transcript_name=ENST00000762333;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002050;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002050;transcript_name=HG003_chrY_T0002050;gene_name=ENSG00000299288;ID=intron:HG003_chrY_T0002050:2;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	962910	963321	.	-	.	source_transcript=ENST00000762333.1;source_transcript_name=ENST00000762333;source_gene=ENSG00000299288.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299288.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000762333.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000762333.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299288;transcript_id=HG003_chrY_T0002050;gene_id=HG003_chrY_G0000775;Parent=HG003_chrY_T0002050;transcript_name=HG003_chrY_T0002050;gene_name=ENSG00000299288;ID=exon:HG003_chrY_T0002050:3;Name=ENSG00000299288;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	995285	997196	.	-	.	source_gene_common_name=CDY18P;source_gene=ENSG00000232205.1;alternative_source_transcripts=ENST00000438294.1;gene_id=HG003_chrY_G0000776;gene_biotype=unprocessed_pseudogene;gene_name=CDY18P;gene_sources=liftoff;ID=HG003_chrY_G0000776;Name=CDY18P
HG003_chrY_random0000146	CAT	transcript	995285	997196	1000	-	.	source_transcript=ENST00000438294.1;source_transcript_name=CDY18P-201;source_gene=ENSG00000232205.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232205.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000438294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438294.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY18P;alternative_source_transcripts=ENST00000438294.1;transcript_id=HG003_chrY_T0002051;gene_id=HG003_chrY_G0000776;Parent=HG003_chrY_G0000776;transcript_name=HG003_chrY_T0002051;gene_name=CDY18P;ID=HG003_chrY_T0002051;Name=CDY18P
HG003_chrY_random0000146	CAT	exon	995285	996699	.	-	.	source_transcript=ENST00000438294.1;source_transcript_name=CDY18P-201;source_gene=ENSG00000232205.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232205.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000438294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY18P;alternative_source_transcripts=ENST00000438294.1;transcript_id=HG003_chrY_T0002051;gene_id=HG003_chrY_G0000776;Parent=HG003_chrY_T0002051;transcript_name=HG003_chrY_T0002051;gene_name=CDY18P;ID=exon:HG003_chrY_T0002051:0;Name=CDY18P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	996700	997002	.	-	.	source_transcript=ENST00000438294.1;source_transcript_name=CDY18P-201;source_gene=ENSG00000232205.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232205.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000438294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY18P;alternative_source_transcripts=ENST00000438294.1;transcript_id=HG003_chrY_T0002051;gene_id=HG003_chrY_G0000776;Parent=HG003_chrY_T0002051;transcript_name=HG003_chrY_T0002051;gene_name=CDY18P;ID=intron:HG003_chrY_T0002051:0;Name=CDY18P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	997003	997196	.	-	.	source_transcript=ENST00000438294.1;source_transcript_name=CDY18P-201;source_gene=ENSG00000232205.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232205.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000438294.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000438294.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY18P;alternative_source_transcripts=ENST00000438294.1;transcript_id=HG003_chrY_T0002051;gene_id=HG003_chrY_G0000776;Parent=HG003_chrY_T0002051;transcript_name=HG003_chrY_T0002051;gene_name=CDY18P;ID=exon:HG003_chrY_T0002051:1;Name=CDY18P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1010956	1019597	.	+	.	source_gene_common_name=USP9YP31;source_gene=ENSG00000229250.1;alternative_source_transcripts=ENST00000431405.1;gene_id=HG003_chrY_G0000777;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP31;gene_sources=liftoff;ID=HG003_chrY_G0000777;Name=USP9YP31
HG003_chrY_random0000146	CAT	transcript	1010956	1019597	1000	+	.	source_transcript=ENST00000431405.1;source_transcript_name=USP9YP31-201;source_gene=ENSG00000229250.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229250.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431405.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP31;alternative_source_transcripts=ENST00000431405.1;transcript_id=HG003_chrY_T0002052;gene_id=HG003_chrY_G0000777;Parent=HG003_chrY_G0000777;transcript_name=HG003_chrY_T0002052;gene_name=USP9YP31;ID=HG003_chrY_T0002052;Name=USP9YP31
HG003_chrY_random0000146	CAT	exon	1010956	1011177	.	+	.	source_transcript=ENST00000431405.1;source_transcript_name=USP9YP31-201;source_gene=ENSG00000229250.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229250.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431405.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP31;alternative_source_transcripts=ENST00000431405.1;transcript_id=HG003_chrY_T0002052;gene_id=HG003_chrY_G0000777;Parent=HG003_chrY_T0002052;transcript_name=HG003_chrY_T0002052;gene_name=USP9YP31;ID=exon:HG003_chrY_T0002052:0;Name=USP9YP31;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1011178	1013322	.	+	.	source_transcript=ENST00000431405.1;source_transcript_name=USP9YP31-201;source_gene=ENSG00000229250.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229250.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431405.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP31;alternative_source_transcripts=ENST00000431405.1;transcript_id=HG003_chrY_T0002052;gene_id=HG003_chrY_G0000777;Parent=HG003_chrY_T0002052;transcript_name=HG003_chrY_T0002052;gene_name=USP9YP31;ID=intron:HG003_chrY_T0002052:0;Name=USP9YP31;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1013323	1013542	.	+	.	source_transcript=ENST00000431405.1;source_transcript_name=USP9YP31-201;source_gene=ENSG00000229250.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229250.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431405.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP31;alternative_source_transcripts=ENST00000431405.1;transcript_id=HG003_chrY_T0002052;gene_id=HG003_chrY_G0000777;Parent=HG003_chrY_T0002052;transcript_name=HG003_chrY_T0002052;gene_name=USP9YP31;ID=exon:HG003_chrY_T0002052:1;Name=USP9YP31;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1013543	1015340	.	+	.	source_transcript=ENST00000431405.1;source_transcript_name=USP9YP31-201;source_gene=ENSG00000229250.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229250.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431405.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP31;alternative_source_transcripts=ENST00000431405.1;transcript_id=HG003_chrY_T0002052;gene_id=HG003_chrY_G0000777;Parent=HG003_chrY_T0002052;transcript_name=HG003_chrY_T0002052;gene_name=USP9YP31;ID=intron:HG003_chrY_T0002052:1;Name=USP9YP31;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1015341	1015530	.	+	.	source_transcript=ENST00000431405.1;source_transcript_name=USP9YP31-201;source_gene=ENSG00000229250.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229250.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431405.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP31;alternative_source_transcripts=ENST00000431405.1;transcript_id=HG003_chrY_T0002052;gene_id=HG003_chrY_G0000777;Parent=HG003_chrY_T0002052;transcript_name=HG003_chrY_T0002052;gene_name=USP9YP31;ID=exon:HG003_chrY_T0002052:2;Name=USP9YP31;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1015531	1017345	.	+	.	source_transcript=ENST00000431405.1;source_transcript_name=USP9YP31-201;source_gene=ENSG00000229250.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229250.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431405.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP31;alternative_source_transcripts=ENST00000431405.1;transcript_id=HG003_chrY_T0002052;gene_id=HG003_chrY_G0000777;Parent=HG003_chrY_T0002052;transcript_name=HG003_chrY_T0002052;gene_name=USP9YP31;ID=intron:HG003_chrY_T0002052:2;Name=USP9YP31;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1017346	1017474	.	+	.	source_transcript=ENST00000431405.1;source_transcript_name=USP9YP31-201;source_gene=ENSG00000229250.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229250.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431405.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP31;alternative_source_transcripts=ENST00000431405.1;transcript_id=HG003_chrY_T0002052;gene_id=HG003_chrY_G0000777;Parent=HG003_chrY_T0002052;transcript_name=HG003_chrY_T0002052;gene_name=USP9YP31;ID=exon:HG003_chrY_T0002052:3;Name=USP9YP31;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1017475	1019477	.	+	.	source_transcript=ENST00000431405.1;source_transcript_name=USP9YP31-201;source_gene=ENSG00000229250.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229250.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431405.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP31;alternative_source_transcripts=ENST00000431405.1;transcript_id=HG003_chrY_T0002052;gene_id=HG003_chrY_G0000777;Parent=HG003_chrY_T0002052;transcript_name=HG003_chrY_T0002052;gene_name=USP9YP31;ID=intron:HG003_chrY_T0002052:3;Name=USP9YP31;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1019478	1019597	.	+	.	source_transcript=ENST00000431405.1;source_transcript_name=USP9YP31-201;source_gene=ENSG00000229250.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000229250.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431405.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431405.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP31;alternative_source_transcripts=ENST00000431405.1;transcript_id=HG003_chrY_T0002052;gene_id=HG003_chrY_G0000777;Parent=HG003_chrY_T0002052;transcript_name=HG003_chrY_T0002052;gene_name=USP9YP31;ID=exon:HG003_chrY_T0002052:4;Name=USP9YP31;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1021489	1023502	.	-	.	source_gene_common_name=USP9YP35;source_gene=ENSG00000237467.1;alternative_source_transcripts=ENST00000435696.1;gene_id=HG003_chrY_G0000778;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP35;gene_sources=liftoff;ID=HG003_chrY_G0000778;Name=USP9YP35
HG003_chrY_random0000146	CAT	transcript	1021489	1023502	1000	-	.	source_transcript=ENST00000435696.1;source_transcript_name=USP9YP35-201;source_gene=ENSG00000237467.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237467.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435696.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP35;alternative_source_transcripts=ENST00000435696.1;transcript_id=HG003_chrY_T0002053;gene_id=HG003_chrY_G0000778;Parent=HG003_chrY_G0000778;transcript_name=HG003_chrY_T0002053;gene_name=USP9YP35;ID=HG003_chrY_T0002053;Name=USP9YP35
HG003_chrY_random0000146	CAT	exon	1021489	1021678	.	-	.	source_transcript=ENST00000435696.1;source_transcript_name=USP9YP35-201;source_gene=ENSG00000237467.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237467.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP35;alternative_source_transcripts=ENST00000435696.1;transcript_id=HG003_chrY_T0002053;gene_id=HG003_chrY_G0000778;Parent=HG003_chrY_T0002053;transcript_name=HG003_chrY_T0002053;gene_name=USP9YP35;ID=exon:HG003_chrY_T0002053:0;Name=USP9YP35;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1021679	1023280	.	-	.	source_transcript=ENST00000435696.1;source_transcript_name=USP9YP35-201;source_gene=ENSG00000237467.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237467.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP35;alternative_source_transcripts=ENST00000435696.1;transcript_id=HG003_chrY_T0002053;gene_id=HG003_chrY_G0000778;Parent=HG003_chrY_T0002053;transcript_name=HG003_chrY_T0002053;gene_name=USP9YP35;ID=intron:HG003_chrY_T0002053:0;Name=USP9YP35;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1023281	1023502	.	-	.	source_transcript=ENST00000435696.1;source_transcript_name=USP9YP35-201;source_gene=ENSG00000237467.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237467.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000435696.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000435696.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP35;alternative_source_transcripts=ENST00000435696.1;transcript_id=HG003_chrY_T0002053;gene_id=HG003_chrY_G0000778;Parent=HG003_chrY_T0002053;transcript_name=HG003_chrY_T0002053;gene_name=USP9YP35;ID=exon:HG003_chrY_T0002053:1;Name=USP9YP35;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1049813	1051422	.	+	.	source_gene_common_name=CDY17P;source_gene=ENSG00000231375.1;alternative_source_transcripts=ENST00000414121.1;gene_id=HG003_chrY_G0000779;gene_biotype=unprocessed_pseudogene;gene_name=CDY17P;gene_sources=liftoff;ID=HG003_chrY_G0000779;Name=CDY17P
HG003_chrY_random0000146	CAT	transcript	1049813	1051422	1000	+	.	source_transcript=ENST00000414121.1;source_transcript_name=CDY17P-201;source_gene=ENSG00000231375.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231375.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414121.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414121.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY17P;alternative_source_transcripts=ENST00000414121.1;transcript_id=HG003_chrY_T0002054;gene_id=HG003_chrY_G0000779;Parent=HG003_chrY_G0000779;transcript_name=HG003_chrY_T0002054;gene_name=CDY17P;ID=HG003_chrY_T0002054;Name=CDY17P
HG003_chrY_random0000146	CAT	exon	1049813	1049878	.	+	.	source_transcript=ENST00000414121.1;source_transcript_name=CDY17P-201;source_gene=ENSG00000231375.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231375.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414121.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414121.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY17P;alternative_source_transcripts=ENST00000414121.1;transcript_id=HG003_chrY_T0002054;gene_id=HG003_chrY_G0000779;Parent=HG003_chrY_T0002054;transcript_name=HG003_chrY_T0002054;gene_name=CDY17P;ID=exon:HG003_chrY_T0002054:0;Name=CDY17P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1049879	1050206	.	+	.	source_transcript=ENST00000414121.1;source_transcript_name=CDY17P-201;source_gene=ENSG00000231375.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231375.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414121.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414121.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY17P;alternative_source_transcripts=ENST00000414121.1;transcript_id=HG003_chrY_T0002054;gene_id=HG003_chrY_G0000779;Parent=HG003_chrY_T0002054;transcript_name=HG003_chrY_T0002054;gene_name=CDY17P;ID=intron:HG003_chrY_T0002054:0;Name=CDY17P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1050207	1051422	.	+	.	source_transcript=ENST00000414121.1;source_transcript_name=CDY17P-201;source_gene=ENSG00000231375.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231375.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000414121.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000414121.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY17P;alternative_source_transcripts=ENST00000414121.1;transcript_id=HG003_chrY_T0002054;gene_id=HG003_chrY_G0000779;Parent=HG003_chrY_T0002054;transcript_name=HG003_chrY_T0002054;gene_name=CDY17P;ID=exon:HG003_chrY_T0002054:1;Name=CDY17P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1053281	1056071	.	+	.	source_gene_common_name=CDY1B;source_gene=ENSG00000172352.5;alternative_source_transcripts=ENST00000382407.1;gene_id=HG003_chrY_G0000780;gene_biotype=protein_coding;gene_name=CDY1B;gene_sources=liftoff;ID=HG003_chrY_G0000780;Name=CDY1B
HG003_chrY_random0000146	CAT	transcript	1053281	1055507	100	+	.	source_transcript=ENST00000382407.1;source_transcript_name=CDY1B-202;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382407.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382407.1;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000382407.1;transcript_id=HG003_chrY_T0002055;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_G0000780;transcript_name=HG003_chrY_T0002055;gene_name=CDY1B;ID=HG003_chrY_T0002055;Name=CDY1B
HG003_chrY_random0000146	CAT	exon	1053281	1055507	.	+	.	source_transcript=ENST00000382407.1;source_transcript_name=CDY1B-202;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382407.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382407.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000382407.1;transcript_id=HG003_chrY_T0002055;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_T0002055;transcript_name=HG003_chrY_T0002055;gene_name=CDY1B;ID=exon:HG003_chrY_T0002055:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	1053612	1055234	.	+	0	source_transcript=ENST00000382407.1;source_transcript_name=CDY1B-202;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382407.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382407.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000382407.1;transcript_id=HG003_chrY_T0002055;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_T0002055;transcript_name=HG003_chrY_T0002055;gene_name=CDY1B;ID=CDS:HG003_chrY_T0002055:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	1053612	1053614	.	+	0	source_transcript=ENST00000382407.1;source_transcript_name=CDY1B-202;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382407.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382407.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000382407.1;transcript_id=HG003_chrY_T0002055;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_T0002055;transcript_name=HG003_chrY_T0002055;gene_name=CDY1B;ID=start_codon:HG003_chrY_T0002055;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	1055232	1055234	.	+	0	source_transcript=ENST00000382407.1;source_transcript_name=CDY1B-202;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000382407.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000382407.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000382407.1;transcript_id=HG003_chrY_T0002055;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_T0002055;transcript_name=HG003_chrY_T0002055;gene_name=CDY1B;ID=stop_codon:HG003_chrY_T0002055;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	1053331	1056071	100	+	.	source_transcript=ENST00000306882.4;source_transcript_name=CDY1B-201;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306882.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000306882.4;transcript_score=200.0;frameshift=False;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000306882.4;transcript_id=HG003_chrY_T0002056;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_G0000780;transcript_name=HG003_chrY_T0002056;gene_name=CDY1B;ID=HG003_chrY_T0002056;Name=CDY1B
HG003_chrY_random0000146	CAT	exon	1053331	1055203	.	+	.	source_transcript=ENST00000306882.4;source_transcript_name=CDY1B-201;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306882.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000306882.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000306882.4;transcript_id=HG003_chrY_T0002056;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_T0002056;transcript_name=HG003_chrY_T0002056;gene_name=CDY1B;ID=exon:HG003_chrY_T0002056:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	1053612	1055203	.	+	0	source_transcript=ENST00000306882.4;source_transcript_name=CDY1B-201;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306882.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000306882.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000306882.4;transcript_id=HG003_chrY_T0002056;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_T0002056;transcript_name=HG003_chrY_T0002056;gene_name=CDY1B;ID=CDS:HG003_chrY_T0002056:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	start_codon	1053612	1053614	.	+	0	source_transcript=ENST00000306882.4;source_transcript_name=CDY1B-201;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306882.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000306882.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000306882.4;transcript_id=HG003_chrY_T0002056;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_T0002056;transcript_name=HG003_chrY_T0002056;gene_name=CDY1B;ID=start_codon:HG003_chrY_T0002056;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1055204	1055623	.	+	.	source_transcript=ENST00000306882.4;source_transcript_name=CDY1B-201;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306882.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000306882.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000306882.4;transcript_id=HG003_chrY_T0002056;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_T0002056;transcript_name=HG003_chrY_T0002056;gene_name=CDY1B;ID=intron:HG003_chrY_T0002056:0;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1055624	1056071	.	+	.	source_transcript=ENST00000306882.4;source_transcript_name=CDY1B-201;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306882.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000306882.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000306882.4;transcript_id=HG003_chrY_T0002056;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_T0002056;transcript_name=HG003_chrY_T0002056;gene_name=CDY1B;ID=exon:HG003_chrY_T0002056:1;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	CDS	1055624	1055696	.	+	1	source_transcript=ENST00000306882.4;source_transcript_name=CDY1B-201;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306882.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000306882.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000306882.4;transcript_id=HG003_chrY_T0002056;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_T0002056;transcript_name=HG003_chrY_T0002056;gene_name=CDY1B;ID=CDS:HG003_chrY_T0002056:1;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	stop_codon	1055694	1055696	.	+	0	source_transcript=ENST00000306882.4;source_transcript_name=CDY1B-201;source_gene=ENSG00000172352.5;source_gene_biotype=protein_coding;original_gene_id=ENSG00000172352.5;gene_biotype=protein_coding;transcript_biotype=protein_coding;alignment_id=ENST00000306882.4;alignment_mode=liftoff;normalized_transcript_id=ENST00000306882.4;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY1B;alternative_source_transcripts=ENST00000306882.4;transcript_id=HG003_chrY_T0002056;gene_id=HG003_chrY_G0000780;Parent=HG003_chrY_T0002056;transcript_name=HG003_chrY_T0002056;gene_name=CDY1B;ID=stop_codon:HG003_chrY_T0002056;Name=CDY1B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1094071	1094397	.	+	.	source_gene_common_name=ELOCP34;source_gene=ENSG00000270535.1;alternative_source_transcripts=ENST00000440624.1;gene_id=HG003_chrY_G0000781;gene_biotype=processed_pseudogene;gene_name=ELOCP34;gene_sources=liftoff;ID=HG003_chrY_G0000781;Name=ELOCP34
HG003_chrY_random0000146	CAT	transcript	1094071	1094397	1000	+	.	source_transcript=ENST00000604436.1;source_transcript_name=ELOCP34-201;source_gene=ENSG00000270535.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000270535.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000604436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000604436.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP34;alternative_source_transcripts=ENST00000440624.1;transcript_id=HG003_chrY_T0002057;gene_id=HG003_chrY_G0000781;Parent=HG003_chrY_G0000781;transcript_name=HG003_chrY_T0002057;gene_name=ELOCP34;ID=HG003_chrY_T0002057;Name=ELOCP34
HG003_chrY_random0000146	CAT	exon	1094071	1094397	.	+	.	source_transcript=ENST00000604436.1;source_transcript_name=ELOCP34-201;source_gene=ENSG00000270535.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000270535.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000604436.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000604436.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP34;alternative_source_transcripts=ENST00000440624.1;transcript_id=HG003_chrY_T0002057;gene_id=HG003_chrY_G0000781;Parent=HG003_chrY_T0002057;transcript_name=HG003_chrY_T0002057;gene_name=ELOCP34;ID=exon:HG003_chrY_T0002057:0;Name=ELOCP34;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1106211	1128511	.	-	.	source_gene_common_name=OFD1P12Y;source_gene=ENSG00000232585.1;alternative_source_transcripts=ENST00000427963.1;gene_id=HG003_chrY_G0000782;gene_biotype=unprocessed_pseudogene;gene_name=OFD1P12Y;gene_sources=liftoff;ID=HG003_chrY_G0000782;Name=OFD1P12Y
HG003_chrY_random0000146	CAT	transcript	1106211	1128511	1000	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_G0000782;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=HG003_chrY_T0002058;Name=OFD1P12Y
HG003_chrY_random0000146	CAT	exon	1106211	1106359	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=exon:HG003_chrY_T0002058:0;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1106360	1107974	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=intron:HG003_chrY_T0002058:0;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1107975	1108066	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=exon:HG003_chrY_T0002058:1;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1108067	1109171	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=intron:HG003_chrY_T0002058:1;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1109172	1109245	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=exon:HG003_chrY_T0002058:2;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1109246	1111021	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=intron:HG003_chrY_T0002058:2;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1111022	1111134	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=exon:HG003_chrY_T0002058:3;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1111135	1113240	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=intron:HG003_chrY_T0002058:3;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1113241	1113349	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=exon:HG003_chrY_T0002058:4;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1113350	1116393	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=intron:HG003_chrY_T0002058:4;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1116394	1116529	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=exon:HG003_chrY_T0002058:5;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1116530	1116867	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=intron:HG003_chrY_T0002058:5;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1116868	1117001	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=exon:HG003_chrY_T0002058:6;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1117002	1124504	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=intron:HG003_chrY_T0002058:6;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1124505	1124537	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=exon:HG003_chrY_T0002058:7;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1124538	1124622	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=intron:HG003_chrY_T0002058:7;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1124623	1124690	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=exon:HG003_chrY_T0002058:8;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1124691	1126897	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=intron:HG003_chrY_T0002058:8;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1126898	1127097	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=exon:HG003_chrY_T0002058:9;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1127098	1128412	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=intron:HG003_chrY_T0002058:9;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1128413	1128511	.	-	.	source_transcript=ENST00000427963.1;source_transcript_name=OFD1P12Y-201;source_gene=ENSG00000232585.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232585.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427963.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427963.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P12Y;alternative_source_transcripts=ENST00000427963.1;transcript_id=HG003_chrY_T0002058;gene_id=HG003_chrY_G0000782;Parent=HG003_chrY_T0002058;transcript_name=HG003_chrY_T0002058;gene_name=OFD1P12Y;ID=exon:HG003_chrY_T0002058:10;Name=OFD1P12Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1130597	1133727	.	+	.	source_gene_common_name=TRAPPC2P10;source_gene=ENSG00000228465.1;alternative_source_transcripts=ENST00000415662.1;gene_id=HG003_chrY_G0000783;gene_biotype=unprocessed_pseudogene;gene_name=TRAPPC2P10;gene_sources=liftoff;ID=HG003_chrY_G0000783;Name=TRAPPC2P10
HG003_chrY_random0000146	CAT	transcript	1130597	1133727	1000	+	.	source_transcript=ENST00000415662.1;source_transcript_name=TRAPPC2P10-201;source_gene=ENSG00000228465.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228465.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000415662.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415662.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P10;alternative_source_transcripts=ENST00000415662.1;transcript_id=HG003_chrY_T0002059;gene_id=HG003_chrY_G0000783;Parent=HG003_chrY_G0000783;transcript_name=HG003_chrY_T0002059;gene_name=TRAPPC2P10;ID=HG003_chrY_T0002059;Name=TRAPPC2P10
HG003_chrY_random0000146	CAT	exon	1130597	1130708	.	+	.	source_transcript=ENST00000415662.1;source_transcript_name=TRAPPC2P10-201;source_gene=ENSG00000228465.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228465.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000415662.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415662.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P10;alternative_source_transcripts=ENST00000415662.1;transcript_id=HG003_chrY_T0002059;gene_id=HG003_chrY_G0000783;Parent=HG003_chrY_T0002059;transcript_name=HG003_chrY_T0002059;gene_name=TRAPPC2P10;ID=exon:HG003_chrY_T0002059:0;Name=TRAPPC2P10;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1130709	1133072	.	+	.	source_transcript=ENST00000415662.1;source_transcript_name=TRAPPC2P10-201;source_gene=ENSG00000228465.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228465.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000415662.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415662.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P10;alternative_source_transcripts=ENST00000415662.1;transcript_id=HG003_chrY_T0002059;gene_id=HG003_chrY_G0000783;Parent=HG003_chrY_T0002059;transcript_name=HG003_chrY_T0002059;gene_name=TRAPPC2P10;ID=intron:HG003_chrY_T0002059:0;Name=TRAPPC2P10;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1133073	1133204	.	+	.	source_transcript=ENST00000415662.1;source_transcript_name=TRAPPC2P10-201;source_gene=ENSG00000228465.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228465.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000415662.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415662.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P10;alternative_source_transcripts=ENST00000415662.1;transcript_id=HG003_chrY_T0002059;gene_id=HG003_chrY_G0000783;Parent=HG003_chrY_T0002059;transcript_name=HG003_chrY_T0002059;gene_name=TRAPPC2P10;ID=exon:HG003_chrY_T0002059:1;Name=TRAPPC2P10;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1133205	1133648	.	+	.	source_transcript=ENST00000415662.1;source_transcript_name=TRAPPC2P10-201;source_gene=ENSG00000228465.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228465.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000415662.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415662.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P10;alternative_source_transcripts=ENST00000415662.1;transcript_id=HG003_chrY_T0002059;gene_id=HG003_chrY_G0000783;Parent=HG003_chrY_T0002059;transcript_name=HG003_chrY_T0002059;gene_name=TRAPPC2P10;ID=intron:HG003_chrY_T0002059:1;Name=TRAPPC2P10;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1133649	1133727	.	+	.	source_transcript=ENST00000415662.1;source_transcript_name=TRAPPC2P10-201;source_gene=ENSG00000228465.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000228465.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000415662.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000415662.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P10;alternative_source_transcripts=ENST00000415662.1;transcript_id=HG003_chrY_T0002059;gene_id=HG003_chrY_G0000783;Parent=HG003_chrY_T0002059;transcript_name=HG003_chrY_T0002059;gene_name=TRAPPC2P10;ID=exon:HG003_chrY_T0002059:2;Name=TRAPPC2P10;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1141073	1144722	.	-	.	source_gene_common_name=RAB9AP5;source_gene=ENSG00000231423.1;alternative_source_transcripts=ENST00000437794.1;gene_id=HG003_chrY_G0000784;gene_biotype=unprocessed_pseudogene;gene_name=RAB9AP5;gene_sources=liftoff;ID=HG003_chrY_G0000784;Name=RAB9AP5
HG003_chrY_random0000146	CAT	transcript	1141073	1144722	1000	-	.	source_transcript=ENST00000437794.1;source_transcript_name=RAB9AP5-201;source_gene=ENSG00000231423.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231423.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437794.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP5;alternative_source_transcripts=ENST00000437794.1;transcript_id=HG003_chrY_T0002060;gene_id=HG003_chrY_G0000784;Parent=HG003_chrY_G0000784;transcript_name=HG003_chrY_T0002060;gene_name=RAB9AP5;ID=HG003_chrY_T0002060;Name=RAB9AP5
HG003_chrY_random0000146	CAT	exon	1141073	1141441	.	-	.	source_transcript=ENST00000437794.1;source_transcript_name=RAB9AP5-201;source_gene=ENSG00000231423.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231423.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437794.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP5;alternative_source_transcripts=ENST00000437794.1;transcript_id=HG003_chrY_T0002060;gene_id=HG003_chrY_G0000784;Parent=HG003_chrY_T0002060;transcript_name=HG003_chrY_T0002060;gene_name=RAB9AP5;ID=exon:HG003_chrY_T0002060:0;Name=RAB9AP5;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1141442	1144494	.	-	.	source_transcript=ENST00000437794.1;source_transcript_name=RAB9AP5-201;source_gene=ENSG00000231423.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231423.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437794.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP5;alternative_source_transcripts=ENST00000437794.1;transcript_id=HG003_chrY_T0002060;gene_id=HG003_chrY_G0000784;Parent=HG003_chrY_T0002060;transcript_name=HG003_chrY_T0002060;gene_name=RAB9AP5;ID=intron:HG003_chrY_T0002060:0;Name=RAB9AP5;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1144495	1144722	.	-	.	source_transcript=ENST00000437794.1;source_transcript_name=RAB9AP5-201;source_gene=ENSG00000231423.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000231423.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000437794.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000437794.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP5;alternative_source_transcripts=ENST00000437794.1;transcript_id=HG003_chrY_T0002060;gene_id=HG003_chrY_G0000784;Parent=HG003_chrY_T0002060;transcript_name=HG003_chrY_T0002060;gene_name=RAB9AP5;ID=exon:HG003_chrY_T0002060:1;Name=RAB9AP5;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1148994	1155360	.	+	.	source_gene_common_name=USP9YP12;source_gene=ENSG00000227871.1;alternative_source_transcripts=ENST00000450481.1;gene_id=HG003_chrY_G0000785;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP12;gene_sources=liftoff;ID=HG003_chrY_G0000785;Name=USP9YP12
HG003_chrY_random0000146	CAT	transcript	1148994	1155360	1000	+	.	source_transcript=ENST00000450481.1;source_transcript_name=USP9YP12-201;source_gene=ENSG00000227871.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227871.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450481.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP12;alternative_source_transcripts=ENST00000450481.1;transcript_id=HG003_chrY_T0002061;gene_id=HG003_chrY_G0000785;Parent=HG003_chrY_G0000785;transcript_name=HG003_chrY_T0002061;gene_name=USP9YP12;ID=HG003_chrY_T0002061;Name=USP9YP12
HG003_chrY_random0000146	CAT	exon	1148994	1149125	.	+	.	source_transcript=ENST00000450481.1;source_transcript_name=USP9YP12-201;source_gene=ENSG00000227871.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227871.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP12;alternative_source_transcripts=ENST00000450481.1;transcript_id=HG003_chrY_T0002061;gene_id=HG003_chrY_G0000785;Parent=HG003_chrY_T0002061;transcript_name=HG003_chrY_T0002061;gene_name=USP9YP12;ID=exon:HG003_chrY_T0002061:0;Name=USP9YP12;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1149126	1154186	.	+	.	source_transcript=ENST00000450481.1;source_transcript_name=USP9YP12-201;source_gene=ENSG00000227871.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227871.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP12;alternative_source_transcripts=ENST00000450481.1;transcript_id=HG003_chrY_T0002061;gene_id=HG003_chrY_G0000785;Parent=HG003_chrY_T0002061;transcript_name=HG003_chrY_T0002061;gene_name=USP9YP12;ID=intron:HG003_chrY_T0002061:0;Name=USP9YP12;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1154187	1154340	.	+	.	source_transcript=ENST00000450481.1;source_transcript_name=USP9YP12-201;source_gene=ENSG00000227871.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227871.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP12;alternative_source_transcripts=ENST00000450481.1;transcript_id=HG003_chrY_T0002061;gene_id=HG003_chrY_G0000785;Parent=HG003_chrY_T0002061;transcript_name=HG003_chrY_T0002061;gene_name=USP9YP12;ID=exon:HG003_chrY_T0002061:1;Name=USP9YP12;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1154341	1154695	.	+	.	source_transcript=ENST00000450481.1;source_transcript_name=USP9YP12-201;source_gene=ENSG00000227871.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227871.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP12;alternative_source_transcripts=ENST00000450481.1;transcript_id=HG003_chrY_T0002061;gene_id=HG003_chrY_G0000785;Parent=HG003_chrY_T0002061;transcript_name=HG003_chrY_T0002061;gene_name=USP9YP12;ID=intron:HG003_chrY_T0002061:1;Name=USP9YP12;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1154696	1154883	.	+	.	source_transcript=ENST00000450481.1;source_transcript_name=USP9YP12-201;source_gene=ENSG00000227871.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227871.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP12;alternative_source_transcripts=ENST00000450481.1;transcript_id=HG003_chrY_T0002061;gene_id=HG003_chrY_G0000785;Parent=HG003_chrY_T0002061;transcript_name=HG003_chrY_T0002061;gene_name=USP9YP12;ID=exon:HG003_chrY_T0002061:2;Name=USP9YP12;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1154884	1155264	.	+	.	source_transcript=ENST00000450481.1;source_transcript_name=USP9YP12-201;source_gene=ENSG00000227871.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227871.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP12;alternative_source_transcripts=ENST00000450481.1;transcript_id=HG003_chrY_T0002061;gene_id=HG003_chrY_G0000785;Parent=HG003_chrY_T0002061;transcript_name=HG003_chrY_T0002061;gene_name=USP9YP12;ID=intron:HG003_chrY_T0002061:2;Name=USP9YP12;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1155265	1155360	.	+	.	source_transcript=ENST00000450481.1;source_transcript_name=USP9YP12-201;source_gene=ENSG00000227871.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227871.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000450481.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000450481.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP12;alternative_source_transcripts=ENST00000450481.1;transcript_id=HG003_chrY_T0002061;gene_id=HG003_chrY_G0000785;Parent=HG003_chrY_T0002061;transcript_name=HG003_chrY_T0002061;gene_name=USP9YP12;ID=exon:HG003_chrY_T0002061:3;Name=USP9YP12;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1154516	1154669	.	+	.	source_gene_common_name=RNU1-86P;source_gene=ENSG00000251917.1;alternative_source_transcripts=ENST00000516108.1;gene_id=HG003_chrY_G0000786;gene_biotype=snRNA;gene_name=RNU1-86P;gene_sources=liftoff;ID=HG003_chrY_G0000786;Name=RNU1-86P
HG003_chrY_random0000146	CAT	transcript	1154516	1154669	1000	+	.	source_transcript=ENST00000516108.1;source_transcript_name=RNU1-86P-201;source_gene=ENSG00000251917.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000251917.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516108.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516108.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-86P;alternative_source_transcripts=ENST00000516108.1;transcript_id=HG003_chrY_T0002062;gene_id=HG003_chrY_G0000786;Parent=HG003_chrY_G0000786;transcript_name=HG003_chrY_T0002062;gene_name=RNU1-86P;ID=HG003_chrY_T0002062;Name=RNU1-86P
HG003_chrY_random0000146	CAT	exon	1154516	1154669	.	+	.	source_transcript=ENST00000516108.1;source_transcript_name=RNU1-86P-201;source_gene=ENSG00000251917.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000251917.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516108.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516108.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-86P;alternative_source_transcripts=ENST00000516108.1;transcript_id=HG003_chrY_T0002062;gene_id=HG003_chrY_G0000786;Parent=HG003_chrY_T0002062;transcript_name=HG003_chrY_T0002062;gene_name=RNU1-86P;ID=exon:HG003_chrY_T0002062:0;Name=RNU1-86P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1159664	1164559	.	+	.	source_gene_common_name=TTTY3B;source_gene=ENSG00000280961.1;alternative_source_transcripts=ENST00000631331.1;gene_id=HG003_chrY_G0000787;gene_biotype=lncRNA;gene_name=TTTY3B;gene_sources=liftoff;ID=HG003_chrY_G0000787;Name=TTTY3B
HG003_chrY_random0000146	CAT	transcript	1159664	1164559	1000	+	.	source_transcript=ENST00000631331.1;source_transcript_name=TTTY3B-201;source_gene=ENSG00000280961.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000280961.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000631331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000631331.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=ENST00000631331.1;transcript_id=HG003_chrY_T0002063;gene_id=HG003_chrY_G0000787;Parent=HG003_chrY_G0000787;transcript_name=HG003_chrY_T0002063;gene_name=TTTY3B;ID=HG003_chrY_T0002063;Name=TTTY3B
HG003_chrY_random0000146	CAT	exon	1159664	1159767	.	+	.	source_transcript=ENST00000631331.1;source_transcript_name=TTTY3B-201;source_gene=ENSG00000280961.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000280961.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000631331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000631331.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=ENST00000631331.1;transcript_id=HG003_chrY_T0002063;gene_id=HG003_chrY_G0000787;Parent=HG003_chrY_T0002063;transcript_name=HG003_chrY_T0002063;gene_name=TTTY3B;ID=exon:HG003_chrY_T0002063:0;Name=TTTY3B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1159768	1161965	.	+	.	source_transcript=ENST00000631331.1;source_transcript_name=TTTY3B-201;source_gene=ENSG00000280961.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000280961.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000631331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000631331.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=ENST00000631331.1;transcript_id=HG003_chrY_T0002063;gene_id=HG003_chrY_G0000787;Parent=HG003_chrY_T0002063;transcript_name=HG003_chrY_T0002063;gene_name=TTTY3B;ID=intron:HG003_chrY_T0002063:0;Name=TTTY3B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1161966	1162100	.	+	.	source_transcript=ENST00000631331.1;source_transcript_name=TTTY3B-201;source_gene=ENSG00000280961.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000280961.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000631331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000631331.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=ENST00000631331.1;transcript_id=HG003_chrY_T0002063;gene_id=HG003_chrY_G0000787;Parent=HG003_chrY_T0002063;transcript_name=HG003_chrY_T0002063;gene_name=TTTY3B;ID=exon:HG003_chrY_T0002063:1;Name=TTTY3B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1162101	1164454	.	+	.	source_transcript=ENST00000631331.1;source_transcript_name=TTTY3B-201;source_gene=ENSG00000280961.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000280961.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000631331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000631331.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=ENST00000631331.1;transcript_id=HG003_chrY_T0002063;gene_id=HG003_chrY_G0000787;Parent=HG003_chrY_T0002063;transcript_name=HG003_chrY_T0002063;gene_name=TTTY3B;ID=intron:HG003_chrY_T0002063:1;Name=TTTY3B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1164455	1164559	.	+	.	source_transcript=ENST00000631331.1;source_transcript_name=TTTY3B-201;source_gene=ENSG00000280961.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000280961.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000631331.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000631331.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TTTY3B;alternative_source_transcripts=ENST00000631331.1;transcript_id=HG003_chrY_T0002063;gene_id=HG003_chrY_G0000787;Parent=HG003_chrY_T0002063;transcript_name=HG003_chrY_T0002063;gene_name=TTTY3B;ID=exon:HG003_chrY_T0002063:2;Name=TTTY3B;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1161185	1166333	.	-	.	source_gene_common_name=USP9YP11;source_gene=ENSG00000226369.1;alternative_source_transcripts=ENST00000427537.1;gene_id=HG003_chrY_G0000788;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP11;gene_sources=liftoff;ID=HG003_chrY_G0000788;Name=USP9YP11
HG003_chrY_random0000146	CAT	transcript	1161185	1166333	1000	-	.	source_transcript=ENST00000427537.1;source_transcript_name=USP9YP11-201;source_gene=ENSG00000226369.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226369.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427537.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427537.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP11;alternative_source_transcripts=ENST00000427537.1;transcript_id=HG003_chrY_T0002064;gene_id=HG003_chrY_G0000788;Parent=HG003_chrY_G0000788;transcript_name=HG003_chrY_T0002064;gene_name=USP9YP11;ID=HG003_chrY_T0002064;Name=USP9YP11
HG003_chrY_random0000146	CAT	exon	1161185	1161375	.	-	.	source_transcript=ENST00000427537.1;source_transcript_name=USP9YP11-201;source_gene=ENSG00000226369.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226369.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427537.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427537.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP11;alternative_source_transcripts=ENST00000427537.1;transcript_id=HG003_chrY_T0002064;gene_id=HG003_chrY_G0000788;Parent=HG003_chrY_T0002064;transcript_name=HG003_chrY_T0002064;gene_name=USP9YP11;ID=exon:HG003_chrY_T0002064:0;Name=USP9YP11;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1161376	1163010	.	-	.	source_transcript=ENST00000427537.1;source_transcript_name=USP9YP11-201;source_gene=ENSG00000226369.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226369.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427537.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427537.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP11;alternative_source_transcripts=ENST00000427537.1;transcript_id=HG003_chrY_T0002064;gene_id=HG003_chrY_G0000788;Parent=HG003_chrY_T0002064;transcript_name=HG003_chrY_T0002064;gene_name=USP9YP11;ID=intron:HG003_chrY_T0002064:0;Name=USP9YP11;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1163011	1163273	.	-	.	source_transcript=ENST00000427537.1;source_transcript_name=USP9YP11-201;source_gene=ENSG00000226369.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226369.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427537.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427537.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP11;alternative_source_transcripts=ENST00000427537.1;transcript_id=HG003_chrY_T0002064;gene_id=HG003_chrY_G0000788;Parent=HG003_chrY_T0002064;transcript_name=HG003_chrY_T0002064;gene_name=USP9YP11;ID=exon:HG003_chrY_T0002064:1;Name=USP9YP11;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1163274	1164396	.	-	.	source_transcript=ENST00000427537.1;source_transcript_name=USP9YP11-201;source_gene=ENSG00000226369.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226369.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427537.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427537.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP11;alternative_source_transcripts=ENST00000427537.1;transcript_id=HG003_chrY_T0002064;gene_id=HG003_chrY_G0000788;Parent=HG003_chrY_T0002064;transcript_name=HG003_chrY_T0002064;gene_name=USP9YP11;ID=intron:HG003_chrY_T0002064:1;Name=USP9YP11;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1164397	1164620	.	-	.	source_transcript=ENST00000427537.1;source_transcript_name=USP9YP11-201;source_gene=ENSG00000226369.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226369.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427537.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427537.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP11;alternative_source_transcripts=ENST00000427537.1;transcript_id=HG003_chrY_T0002064;gene_id=HG003_chrY_G0000788;Parent=HG003_chrY_T0002064;transcript_name=HG003_chrY_T0002064;gene_name=USP9YP11;ID=exon:HG003_chrY_T0002064:2;Name=USP9YP11;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1164621	1166294	.	-	.	source_transcript=ENST00000427537.1;source_transcript_name=USP9YP11-201;source_gene=ENSG00000226369.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226369.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427537.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427537.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP11;alternative_source_transcripts=ENST00000427537.1;transcript_id=HG003_chrY_T0002064;gene_id=HG003_chrY_G0000788;Parent=HG003_chrY_T0002064;transcript_name=HG003_chrY_T0002064;gene_name=USP9YP11;ID=intron:HG003_chrY_T0002064:2;Name=USP9YP11;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1166295	1166333	.	-	.	source_transcript=ENST00000427537.1;source_transcript_name=USP9YP11-201;source_gene=ENSG00000226369.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226369.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000427537.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000427537.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP11;alternative_source_transcripts=ENST00000427537.1;transcript_id=HG003_chrY_T0002064;gene_id=HG003_chrY_G0000788;Parent=HG003_chrY_T0002064;transcript_name=HG003_chrY_T0002064;gene_name=USP9YP11;ID=exon:HG003_chrY_T0002064:3;Name=USP9YP11;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1179768	1181373	.	-	.	source_gene_common_name=USP9YP13;source_gene=ENSG00000224571.1;alternative_source_transcripts=ENST00000417797.1;gene_id=HG003_chrY_G0000789;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP13;gene_sources=liftoff;ID=HG003_chrY_G0000789;Name=USP9YP13
HG003_chrY_random0000146	CAT	transcript	1179768	1181373	1000	-	.	source_transcript=ENST00000417797.1;source_transcript_name=USP9YP13-201;source_gene=ENSG00000224571.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224571.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417797.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP13;alternative_source_transcripts=ENST00000417797.1;transcript_id=HG003_chrY_T0002065;gene_id=HG003_chrY_G0000789;Parent=HG003_chrY_G0000789;transcript_name=HG003_chrY_T0002065;gene_name=USP9YP13;ID=HG003_chrY_T0002065;Name=USP9YP13
HG003_chrY_random0000146	CAT	exon	1179768	1180027	.	-	.	source_transcript=ENST00000417797.1;source_transcript_name=USP9YP13-201;source_gene=ENSG00000224571.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224571.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417797.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP13;alternative_source_transcripts=ENST00000417797.1;transcript_id=HG003_chrY_T0002065;gene_id=HG003_chrY_G0000789;Parent=HG003_chrY_T0002065;transcript_name=HG003_chrY_T0002065;gene_name=USP9YP13;ID=exon:HG003_chrY_T0002065:0;Name=USP9YP13;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1180028	1181153	.	-	.	source_transcript=ENST00000417797.1;source_transcript_name=USP9YP13-201;source_gene=ENSG00000224571.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224571.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417797.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP13;alternative_source_transcripts=ENST00000417797.1;transcript_id=HG003_chrY_T0002065;gene_id=HG003_chrY_G0000789;Parent=HG003_chrY_T0002065;transcript_name=HG003_chrY_T0002065;gene_name=USP9YP13;ID=intron:HG003_chrY_T0002065:0;Name=USP9YP13;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1181154	1181373	.	-	.	source_transcript=ENST00000417797.1;source_transcript_name=USP9YP13-201;source_gene=ENSG00000224571.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224571.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000417797.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000417797.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP13;alternative_source_transcripts=ENST00000417797.1;transcript_id=HG003_chrY_T0002065;gene_id=HG003_chrY_G0000789;Parent=HG003_chrY_T0002065;transcript_name=HG003_chrY_T0002065;gene_name=USP9YP13;ID=exon:HG003_chrY_T0002065:1;Name=USP9YP13;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1183555	1184037	.	+	.	source_gene_common_name=XKRYP5;source_gene=ENSG00000223406.1;alternative_source_transcripts=ENST00000414395.1;gene_id=HG003_chrY_G0000790;gene_biotype=unprocessed_pseudogene;gene_name=XKRYP5;gene_sources=liftoff;ID=HG003_chrY_G0000790;Name=XKRYP5
HG003_chrY_random0000146	CAT	transcript	1183555	1184037	1000	+	.	source_transcript=ENST00000449659.1;source_transcript_name=XKRYP5-201;source_gene=ENSG00000223406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449659.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP5;alternative_source_transcripts=ENST00000414395.1;transcript_id=HG003_chrY_T0002066;gene_id=HG003_chrY_G0000790;Parent=HG003_chrY_G0000790;transcript_name=HG003_chrY_T0002066;gene_name=XKRYP5;ID=HG003_chrY_T0002066;Name=XKRYP5
HG003_chrY_random0000146	CAT	exon	1183555	1184037	.	+	.	source_transcript=ENST00000449659.1;source_transcript_name=XKRYP5-201;source_gene=ENSG00000223406.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223406.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449659.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449659.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP5;alternative_source_transcripts=ENST00000414395.1;transcript_id=HG003_chrY_T0002066;gene_id=HG003_chrY_G0000790;Parent=HG003_chrY_T0002066;transcript_name=HG003_chrY_T0002066;gene_name=XKRYP5;ID=exon:HG003_chrY_T0002066:0;Name=XKRYP5;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1244185	1245754	.	+	.	source_gene_common_name=CDY15P;source_gene=ENSG00000223362.1;alternative_source_transcripts=ENST00000421995.1;gene_id=HG003_chrY_G0000791;gene_biotype=unprocessed_pseudogene;gene_name=CDY15P;gene_sources=liftoff;ID=HG003_chrY_G0000791;Name=CDY15P
HG003_chrY_random0000146	CAT	transcript	1244185	1245754	1000	+	.	source_transcript=ENST00000421995.1;source_transcript_name=CDY15P-201;source_gene=ENSG00000223362.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223362.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421995.1;transcript_score=199.936;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY15P;alternative_source_transcripts=ENST00000421995.1;transcript_id=HG003_chrY_T0002067;gene_id=HG003_chrY_G0000791;Parent=HG003_chrY_G0000791;transcript_name=HG003_chrY_T0002067;gene_name=CDY15P;ID=HG003_chrY_T0002067;Name=CDY15P
HG003_chrY_random0000146	CAT	exon	1244185	1245754	.	+	.	source_transcript=ENST00000421995.1;source_transcript_name=CDY15P-201;source_gene=ENSG00000223362.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223362.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000421995.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000421995.1;transcript_score=199.936;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY15P;alternative_source_transcripts=ENST00000421995.1;transcript_id=HG003_chrY_T0002067;gene_id=HG003_chrY_G0000791;Parent=HG003_chrY_T0002067;transcript_name=HG003_chrY_T0002067;gene_name=CDY15P;ID=exon:HG003_chrY_T0002067:0;Name=CDY15P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1292212	1292450	.	+	.	source_gene_common_name=ELOCP9;source_gene=ENSG00000231540.1;alternative_source_transcripts=ENST00000418624.1;gene_id=HG003_chrY_G0000792;gene_biotype=processed_pseudogene;gene_name=ELOCP9;gene_sources=liftoff;ID=HG003_chrY_G0000792;Name=ELOCP9
HG003_chrY_random0000146	CAT	transcript	1292212	1292450	1000	+	.	source_transcript=ENST00000418624.1;source_transcript_name=ELOCP9-201;source_gene=ENSG00000231540.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000231540.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000418624.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418624.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP9;alternative_source_transcripts=ENST00000418624.1;transcript_id=HG003_chrY_T0002068;gene_id=HG003_chrY_G0000792;Parent=HG003_chrY_G0000792;transcript_name=HG003_chrY_T0002068;gene_name=ELOCP9;ID=HG003_chrY_T0002068;Name=ELOCP9
HG003_chrY_random0000146	CAT	exon	1292212	1292450	.	+	.	source_transcript=ENST00000418624.1;source_transcript_name=ELOCP9-201;source_gene=ENSG00000231540.1;source_gene_biotype=processed_pseudogene;original_gene_id=ENSG00000231540.1;gene_biotype=processed_pseudogene;transcript_biotype=processed_pseudogene;alignment_id=ENST00000418624.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418624.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP9;alternative_source_transcripts=ENST00000418624.1;transcript_id=HG003_chrY_T0002068;gene_id=HG003_chrY_G0000792;Parent=HG003_chrY_T0002068;transcript_name=HG003_chrY_T0002068;gene_name=ELOCP9;ID=exon:HG003_chrY_T0002068:0;Name=ELOCP9;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1303121	1330051	.	-	.	source_gene_common_name=OFD1P11Y;source_gene=ENSG00000237302.1;alternative_source_transcripts=ENST00000418213.1;gene_id=HG003_chrY_G0000793;gene_biotype=unprocessed_pseudogene;gene_name=OFD1P11Y;gene_sources=liftoff;ID=HG003_chrY_G0000793;Name=OFD1P11Y
HG003_chrY_random0000146	CAT	transcript	1303121	1330051	1000	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_G0000793;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=HG003_chrY_T0002069;Name=OFD1P11Y
HG003_chrY_random0000146	CAT	exon	1303121	1303192	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=exon:HG003_chrY_T0002069:0;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1303193	1304294	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=intron:HG003_chrY_T0002069:0;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1304295	1304368	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=exon:HG003_chrY_T0002069:1;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1304369	1306154	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=intron:HG003_chrY_T0002069:1;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1306155	1306273	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=exon:HG003_chrY_T0002069:2;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1306274	1308921	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=intron:HG003_chrY_T0002069:2;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1308922	1309028	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=exon:HG003_chrY_T0002069:3;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1309029	1312074	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=intron:HG003_chrY_T0002069:3;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1312075	1312220	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=exon:HG003_chrY_T0002069:4;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1312221	1312564	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=intron:HG003_chrY_T0002069:4;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1312565	1312699	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=exon:HG003_chrY_T0002069:5;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1312700	1316545	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=intron:HG003_chrY_T0002069:5;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1316546	1316669	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=exon:HG003_chrY_T0002069:6;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1316670	1317459	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=intron:HG003_chrY_T0002069:6;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1317460	1317490	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=exon:HG003_chrY_T0002069:7;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1317491	1317574	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=intron:HG003_chrY_T0002069:7;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1317575	1317643	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=exon:HG003_chrY_T0002069:8;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1317644	1328333	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=intron:HG003_chrY_T0002069:8;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1328334	1328535	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=exon:HG003_chrY_T0002069:9;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1328536	1329953	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=intron:HG003_chrY_T0002069:9;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1329954	1330051	.	-	.	source_transcript=ENST00000418213.1;source_transcript_name=OFD1P11Y-201;source_gene=ENSG00000237302.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000237302.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000418213.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000418213.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P11Y;alternative_source_transcripts=ENST00000418213.1;transcript_id=HG003_chrY_T0002069;gene_id=HG003_chrY_G0000793;Parent=HG003_chrY_T0002069;transcript_name=HG003_chrY_T0002069;gene_name=OFD1P11Y;ID=exon:HG003_chrY_T0002069:10;Name=OFD1P11Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1335700	1338445	.	+	.	source_gene_common_name=TRAPPC2P9;source_gene=ENSG00000232845.1;alternative_source_transcripts=ENST00000434556.1;gene_id=HG003_chrY_G0000794;gene_biotype=unprocessed_pseudogene;gene_name=TRAPPC2P9;gene_sources=liftoff;ID=HG003_chrY_G0000794;Name=TRAPPC2P9
HG003_chrY_random0000146	CAT	transcript	1335700	1338445	1000	+	.	source_transcript=ENST00000434556.1;source_transcript_name=TRAPPC2P9-201;source_gene=ENSG00000232845.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232845.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434556.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434556.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P9;alternative_source_transcripts=ENST00000434556.1;transcript_id=HG003_chrY_T0002070;gene_id=HG003_chrY_G0000794;Parent=HG003_chrY_G0000794;transcript_name=HG003_chrY_T0002070;gene_name=TRAPPC2P9;ID=HG003_chrY_T0002070;Name=TRAPPC2P9
HG003_chrY_random0000146	CAT	exon	1335700	1335811	.	+	.	source_transcript=ENST00000434556.1;source_transcript_name=TRAPPC2P9-201;source_gene=ENSG00000232845.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232845.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434556.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434556.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P9;alternative_source_transcripts=ENST00000434556.1;transcript_id=HG003_chrY_T0002070;gene_id=HG003_chrY_G0000794;Parent=HG003_chrY_T0002070;transcript_name=HG003_chrY_T0002070;gene_name=TRAPPC2P9;ID=exon:HG003_chrY_T0002070:0;Name=TRAPPC2P9;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1335812	1337765	.	+	.	source_transcript=ENST00000434556.1;source_transcript_name=TRAPPC2P9-201;source_gene=ENSG00000232845.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232845.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434556.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434556.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P9;alternative_source_transcripts=ENST00000434556.1;transcript_id=HG003_chrY_T0002070;gene_id=HG003_chrY_G0000794;Parent=HG003_chrY_T0002070;transcript_name=HG003_chrY_T0002070;gene_name=TRAPPC2P9;ID=intron:HG003_chrY_T0002070:0;Name=TRAPPC2P9;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1337766	1337910	.	+	.	source_transcript=ENST00000434556.1;source_transcript_name=TRAPPC2P9-201;source_gene=ENSG00000232845.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232845.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434556.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434556.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P9;alternative_source_transcripts=ENST00000434556.1;transcript_id=HG003_chrY_T0002070;gene_id=HG003_chrY_G0000794;Parent=HG003_chrY_T0002070;transcript_name=HG003_chrY_T0002070;gene_name=TRAPPC2P9;ID=exon:HG003_chrY_T0002070:1;Name=TRAPPC2P9;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1337911	1338359	.	+	.	source_transcript=ENST00000434556.1;source_transcript_name=TRAPPC2P9-201;source_gene=ENSG00000232845.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232845.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434556.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434556.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P9;alternative_source_transcripts=ENST00000434556.1;transcript_id=HG003_chrY_T0002070;gene_id=HG003_chrY_G0000794;Parent=HG003_chrY_T0002070;transcript_name=HG003_chrY_T0002070;gene_name=TRAPPC2P9;ID=intron:HG003_chrY_T0002070:1;Name=TRAPPC2P9;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1338360	1338445	.	+	.	source_transcript=ENST00000434556.1;source_transcript_name=TRAPPC2P9-201;source_gene=ENSG00000232845.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232845.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000434556.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434556.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=TRAPPC2P9;alternative_source_transcripts=ENST00000434556.1;transcript_id=HG003_chrY_T0002070;gene_id=HG003_chrY_G0000794;Parent=HG003_chrY_T0002070;transcript_name=HG003_chrY_T0002070;gene_name=TRAPPC2P9;ID=exon:HG003_chrY_T0002070:2;Name=TRAPPC2P9;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1349523	1350095	.	-	.	source_gene_common_name=RAB9AP1;source_gene=ENSG00000232910.1;alternative_source_transcripts=ENST00000449393.1;gene_id=HG003_chrY_G0000795;gene_biotype=unprocessed_pseudogene;gene_name=RAB9AP1;gene_sources=liftoff;ID=HG003_chrY_G0000795;Name=RAB9AP1
HG003_chrY_random0000146	CAT	transcript	1349523	1350095	1000	-	.	source_transcript=ENST00000449393.1;source_transcript_name=RAB9AP1-201;source_gene=ENSG00000232910.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232910.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449393.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449393.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP1;alternative_source_transcripts=ENST00000449393.1;transcript_id=HG003_chrY_T0002071;gene_id=HG003_chrY_G0000795;Parent=HG003_chrY_G0000795;transcript_name=HG003_chrY_T0002071;gene_name=RAB9AP1;ID=HG003_chrY_T0002071;Name=RAB9AP1
HG003_chrY_random0000146	CAT	exon	1349523	1350095	.	-	.	source_transcript=ENST00000449393.1;source_transcript_name=RAB9AP1-201;source_gene=ENSG00000232910.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232910.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000449393.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000449393.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RAB9AP1;alternative_source_transcripts=ENST00000449393.1;transcript_id=HG003_chrY_T0002071;gene_id=HG003_chrY_G0000795;Parent=HG003_chrY_T0002071;transcript_name=HG003_chrY_T0002071;gene_name=RAB9AP1;ID=exon:HG003_chrY_T0002071:0;Name=RAB9AP1;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1354590	1361029	.	+	.	source_gene_common_name=USP9YP29;source_gene=ENSG00000232424.1;gene_id=HG003_chrY_G0000796;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP29;gene_sources=liftoff;ID=HG003_chrY_G0000796;Name=USP9YP29
HG003_chrY_random0000146	CAT	transcript	1354590	1361029	1000	+	.	source_transcript=ENST00000445112.1;source_transcript_name=USP9YP29-201;source_gene=ENSG00000232424.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232424.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445112.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP29;transcript_id=HG003_chrY_T0002072;gene_id=HG003_chrY_G0000796;Parent=HG003_chrY_G0000796;transcript_name=HG003_chrY_T0002072;gene_name=USP9YP29;ID=HG003_chrY_T0002072;Name=USP9YP29
HG003_chrY_random0000146	CAT	exon	1354590	1354717	.	+	.	source_transcript=ENST00000445112.1;source_transcript_name=USP9YP29-201;source_gene=ENSG00000232424.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232424.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445112.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP29;transcript_id=HG003_chrY_T0002072;gene_id=HG003_chrY_G0000796;Parent=HG003_chrY_T0002072;transcript_name=HG003_chrY_T0002072;gene_name=USP9YP29;ID=exon:HG003_chrY_T0002072:0;Name=USP9YP29;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1354718	1359853	.	+	.	source_transcript=ENST00000445112.1;source_transcript_name=USP9YP29-201;source_gene=ENSG00000232424.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232424.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445112.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP29;transcript_id=HG003_chrY_T0002072;gene_id=HG003_chrY_G0000796;Parent=HG003_chrY_T0002072;transcript_name=HG003_chrY_T0002072;gene_name=USP9YP29;ID=intron:HG003_chrY_T0002072:0;Name=USP9YP29;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1359854	1360003	.	+	.	source_transcript=ENST00000445112.1;source_transcript_name=USP9YP29-201;source_gene=ENSG00000232424.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232424.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445112.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP29;transcript_id=HG003_chrY_T0002072;gene_id=HG003_chrY_G0000796;Parent=HG003_chrY_T0002072;transcript_name=HG003_chrY_T0002072;gene_name=USP9YP29;ID=exon:HG003_chrY_T0002072:1;Name=USP9YP29;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1360004	1360152	.	+	.	source_transcript=ENST00000445112.1;source_transcript_name=USP9YP29-201;source_gene=ENSG00000232424.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232424.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445112.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP29;transcript_id=HG003_chrY_T0002072;gene_id=HG003_chrY_G0000796;Parent=HG003_chrY_T0002072;transcript_name=HG003_chrY_T0002072;gene_name=USP9YP29;ID=intron:HG003_chrY_T0002072:1;Name=USP9YP29;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1360153	1360182	.	+	.	source_transcript=ENST00000445112.1;source_transcript_name=USP9YP29-201;source_gene=ENSG00000232424.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232424.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445112.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP29;transcript_id=HG003_chrY_T0002072;gene_id=HG003_chrY_G0000796;Parent=HG003_chrY_T0002072;transcript_name=HG003_chrY_T0002072;gene_name=USP9YP29;ID=exon:HG003_chrY_T0002072:2;Name=USP9YP29;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1360183	1360392	.	+	.	source_transcript=ENST00000445112.1;source_transcript_name=USP9YP29-201;source_gene=ENSG00000232424.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232424.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445112.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP29;transcript_id=HG003_chrY_T0002072;gene_id=HG003_chrY_G0000796;Parent=HG003_chrY_T0002072;transcript_name=HG003_chrY_T0002072;gene_name=USP9YP29;ID=intron:HG003_chrY_T0002072:2;Name=USP9YP29;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1360393	1360551	.	+	.	source_transcript=ENST00000445112.1;source_transcript_name=USP9YP29-201;source_gene=ENSG00000232424.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232424.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445112.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP29;transcript_id=HG003_chrY_T0002072;gene_id=HG003_chrY_G0000796;Parent=HG003_chrY_T0002072;transcript_name=HG003_chrY_T0002072;gene_name=USP9YP29;ID=exon:HG003_chrY_T0002072:3;Name=USP9YP29;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1360552	1360933	.	+	.	source_transcript=ENST00000445112.1;source_transcript_name=USP9YP29-201;source_gene=ENSG00000232424.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232424.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445112.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP29;transcript_id=HG003_chrY_T0002072;gene_id=HG003_chrY_G0000796;Parent=HG003_chrY_T0002072;transcript_name=HG003_chrY_T0002072;gene_name=USP9YP29;ID=intron:HG003_chrY_T0002072:3;Name=USP9YP29;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1360934	1361029	.	+	.	source_transcript=ENST00000445112.1;source_transcript_name=USP9YP29-201;source_gene=ENSG00000232424.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000232424.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445112.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445112.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP29;transcript_id=HG003_chrY_T0002072;gene_id=HG003_chrY_G0000796;Parent=HG003_chrY_T0002072;transcript_name=HG003_chrY_T0002072;gene_name=USP9YP29;ID=exon:HG003_chrY_T0002072:4;Name=USP9YP29;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1360182	1360345	.	+	.	source_gene_common_name=RNU1-97P;source_gene=ENSG00000252681.1;gene_id=HG003_chrY_G0000797;gene_biotype=snRNA;gene_name=RNU1-97P;gene_sources=liftoff;ID=HG003_chrY_G0000797;Name=RNU1-97P
HG003_chrY_random0000146	CAT	transcript	1360182	1360345	1000	+	.	source_transcript=ENST00000516872.1;source_transcript_name=RNU1-97P-201;source_gene=ENSG00000252681.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252681.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516872.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516872.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-97P;transcript_id=HG003_chrY_T0002073;gene_id=HG003_chrY_G0000797;Parent=HG003_chrY_G0000797;transcript_name=HG003_chrY_T0002073;gene_name=RNU1-97P;ID=HG003_chrY_T0002073;Name=RNU1-97P
HG003_chrY_random0000146	CAT	exon	1360182	1360345	.	+	.	source_transcript=ENST00000516872.1;source_transcript_name=RNU1-97P-201;source_gene=ENSG00000252681.1;source_gene_biotype=snRNA;original_gene_id=ENSG00000252681.1;gene_biotype=snRNA;transcript_biotype=snRNA;alignment_id=ENST00000516872.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000516872.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RNU1-97P;transcript_id=HG003_chrY_T0002073;gene_id=HG003_chrY_G0000797;Parent=HG003_chrY_T0002073;transcript_name=HG003_chrY_T0002073;gene_name=RNU1-97P;ID=exon:HG003_chrY_T0002073:0;Name=RNU1-97P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1365034	1367090	.	-	.	source_gene_common_name=USP9YP25;source_gene=ENSG00000224866.1;alternative_source_transcripts=ENST00000457708.1;gene_id=HG003_chrY_G0000798;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP25;gene_sources=liftoff;ID=HG003_chrY_G0000798;Name=USP9YP25
HG003_chrY_random0000146	CAT	transcript	1365034	1367090	1000	-	.	source_transcript=ENST00000457708.1;source_transcript_name=USP9YP25-201;source_gene=ENSG00000224866.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224866.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457708.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP25;alternative_source_transcripts=ENST00000457708.1;transcript_id=HG003_chrY_T0002074;gene_id=HG003_chrY_G0000798;Parent=HG003_chrY_G0000798;transcript_name=HG003_chrY_T0002074;gene_name=USP9YP25;ID=HG003_chrY_T0002074;Name=USP9YP25
HG003_chrY_random0000146	CAT	exon	1365034	1365225	.	-	.	source_transcript=ENST00000457708.1;source_transcript_name=USP9YP25-201;source_gene=ENSG00000224866.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224866.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457708.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP25;alternative_source_transcripts=ENST00000457708.1;transcript_id=HG003_chrY_T0002074;gene_id=HG003_chrY_G0000798;Parent=HG003_chrY_T0002074;transcript_name=HG003_chrY_T0002074;gene_name=USP9YP25;ID=exon:HG003_chrY_T0002074:0;Name=USP9YP25;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1365226	1366839	.	-	.	source_transcript=ENST00000457708.1;source_transcript_name=USP9YP25-201;source_gene=ENSG00000224866.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224866.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457708.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP25;alternative_source_transcripts=ENST00000457708.1;transcript_id=HG003_chrY_T0002074;gene_id=HG003_chrY_G0000798;Parent=HG003_chrY_T0002074;transcript_name=HG003_chrY_T0002074;gene_name=USP9YP25;ID=intron:HG003_chrY_T0002074:0;Name=USP9YP25;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1366840	1367090	.	-	.	source_transcript=ENST00000457708.1;source_transcript_name=USP9YP25-201;source_gene=ENSG00000224866.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224866.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000457708.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000457708.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP25;alternative_source_transcripts=ENST00000457708.1;transcript_id=HG003_chrY_T0002074;gene_id=HG003_chrY_G0000798;Parent=HG003_chrY_T0002074;transcript_name=HG003_chrY_T0002074;gene_name=USP9YP25;ID=exon:HG003_chrY_T0002074:1;Name=USP9YP25;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1374475	1385361	.	+	.	source_gene_common_name=XKRYP3;source_gene=ENSG00000236620.1;alternative_source_transcripts=ENST00000442113.1;gene_id=HG003_chrY_G0000799;gene_biotype=unprocessed_pseudogene;gene_name=XKRYP3;gene_sources=liftoff;ID=HG003_chrY_G0000799;Name=XKRYP3
HG003_chrY_random0000146	CAT	transcript	1374475	1385361	1000	+	.	source_transcript=ENST00000442113.1;source_transcript_name=XKRYP3-201;source_gene=ENSG00000236620.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236620.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000442113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442113.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP3;alternative_source_transcripts=ENST00000442113.1;transcript_id=HG003_chrY_T0002075;gene_id=HG003_chrY_G0000799;Parent=HG003_chrY_G0000799;transcript_name=HG003_chrY_T0002075;gene_name=XKRYP3;ID=HG003_chrY_T0002075;Name=XKRYP3
HG003_chrY_random0000146	CAT	exon	1374475	1374810	.	+	.	source_transcript=ENST00000442113.1;source_transcript_name=XKRYP3-201;source_gene=ENSG00000236620.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236620.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000442113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442113.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP3;alternative_source_transcripts=ENST00000442113.1;transcript_id=HG003_chrY_T0002075;gene_id=HG003_chrY_G0000799;Parent=HG003_chrY_T0002075;transcript_name=HG003_chrY_T0002075;gene_name=XKRYP3;ID=exon:HG003_chrY_T0002075:0;Name=XKRYP3;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1374811	1384581	.	+	.	source_transcript=ENST00000442113.1;source_transcript_name=XKRYP3-201;source_gene=ENSG00000236620.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236620.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000442113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442113.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP3;alternative_source_transcripts=ENST00000442113.1;transcript_id=HG003_chrY_T0002075;gene_id=HG003_chrY_G0000799;Parent=HG003_chrY_T0002075;transcript_name=HG003_chrY_T0002075;gene_name=XKRYP3;ID=intron:HG003_chrY_T0002075:0;Name=XKRYP3;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1384582	1385361	.	+	.	source_transcript=ENST00000442113.1;source_transcript_name=XKRYP3-201;source_gene=ENSG00000236620.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236620.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000442113.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000442113.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=XKRYP3;alternative_source_transcripts=ENST00000442113.1;transcript_id=HG003_chrY_T0002075;gene_id=HG003_chrY_G0000799;Parent=HG003_chrY_T0002075;transcript_name=HG003_chrY_T0002075;gene_name=XKRYP3;ID=exon:HG003_chrY_T0002075:1;Name=XKRYP3;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1422448	1422779	.	-	.	source_gene_common_name=ELOCP16;source_gene=ENSG00000227915.1;alternative_source_transcripts=ENST00000444494.1;gene_id=HG003_chrY_G0000800;gene_biotype=unprocessed_pseudogene;gene_name=ELOCP16;gene_sources=liftoff;ID=HG003_chrY_G0000800;Name=ELOCP16
HG003_chrY_random0000146	CAT	transcript	1422448	1422779	1000	-	.	source_transcript=ENST00000444494.1;source_transcript_name=ELOCP16-201;source_gene=ENSG00000227915.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227915.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444494.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444494.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP16;alternative_source_transcripts=ENST00000444494.1;transcript_id=HG003_chrY_T0002076;gene_id=HG003_chrY_G0000800;Parent=HG003_chrY_G0000800;transcript_name=HG003_chrY_T0002076;gene_name=ELOCP16;ID=HG003_chrY_T0002076;Name=ELOCP16
HG003_chrY_random0000146	CAT	exon	1422448	1422779	.	-	.	source_transcript=ENST00000444494.1;source_transcript_name=ELOCP16-201;source_gene=ENSG00000227915.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000227915.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444494.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444494.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ELOCP16;alternative_source_transcripts=ENST00000444494.1;transcript_id=HG003_chrY_T0002076;gene_id=HG003_chrY_G0000800;Parent=HG003_chrY_T0002076;transcript_name=HG003_chrY_T0002076;gene_name=ELOCP16;ID=exon:HG003_chrY_T0002076:0;Name=ELOCP16;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1425891	1426904	.	-	.	source_gene_common_name=CDY14P;source_gene=ENSG00000226873.1;alternative_source_transcripts=ENST00000431260.1;gene_id=HG003_chrY_G0000801;gene_biotype=unprocessed_pseudogene;gene_name=CDY14P;gene_sources=liftoff;ID=HG003_chrY_G0000801;Name=CDY14P
HG003_chrY_random0000146	CAT	transcript	1425891	1426904	1000	-	.	source_transcript=ENST00000431260.1;source_transcript_name=CDY14P-201;source_gene=ENSG00000226873.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226873.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431260.1;transcript_score=200.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY14P;alternative_source_transcripts=ENST00000431260.1;transcript_id=HG003_chrY_T0002077;gene_id=HG003_chrY_G0000801;Parent=HG003_chrY_G0000801;transcript_name=HG003_chrY_T0002077;gene_name=CDY14P;ID=HG003_chrY_T0002077;Name=CDY14P
HG003_chrY_random0000146	CAT	exon	1425891	1426904	.	-	.	source_transcript=ENST00000431260.1;source_transcript_name=CDY14P-201;source_gene=ENSG00000226873.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000226873.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000431260.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000431260.1;transcript_score=200.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=CDY14P;alternative_source_transcripts=ENST00000431260.1;transcript_id=HG003_chrY_T0002077;gene_id=HG003_chrY_G0000801;Parent=HG003_chrY_T0002077;transcript_name=HG003_chrY_T0002077;gene_name=CDY14P;ID=exon:HG003_chrY_T0002077:0;Name=CDY14P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1433461	1441817	.	+	.	source_gene_common_name=USP9YP18;source_gene=ENSG00000223407.1;alternative_source_transcripts=ENST00000425912.1;gene_id=HG003_chrY_G0000802;gene_biotype=unprocessed_pseudogene;gene_name=USP9YP18;gene_sources=liftoff;ID=HG003_chrY_G0000802;Name=USP9YP18
HG003_chrY_random0000146	CAT	transcript	1433461	1441817	1000	+	.	source_transcript=ENST00000425912.1;source_transcript_name=USP9YP18-201;source_gene=ENSG00000223407.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223407.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425912.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425912.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP18;alternative_source_transcripts=ENST00000425912.1;transcript_id=HG003_chrY_T0002078;gene_id=HG003_chrY_G0000802;Parent=HG003_chrY_G0000802;transcript_name=HG003_chrY_T0002078;gene_name=USP9YP18;ID=HG003_chrY_T0002078;Name=USP9YP18
HG003_chrY_random0000146	CAT	exon	1433461	1433681	.	+	.	source_transcript=ENST00000425912.1;source_transcript_name=USP9YP18-201;source_gene=ENSG00000223407.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223407.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425912.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425912.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP18;alternative_source_transcripts=ENST00000425912.1;transcript_id=HG003_chrY_T0002078;gene_id=HG003_chrY_G0000802;Parent=HG003_chrY_T0002078;transcript_name=HG003_chrY_T0002078;gene_name=USP9YP18;ID=exon:HG003_chrY_T0002078:0;Name=USP9YP18;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1433682	1435484	.	+	.	source_transcript=ENST00000425912.1;source_transcript_name=USP9YP18-201;source_gene=ENSG00000223407.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223407.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425912.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425912.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP18;alternative_source_transcripts=ENST00000425912.1;transcript_id=HG003_chrY_T0002078;gene_id=HG003_chrY_G0000802;Parent=HG003_chrY_T0002078;transcript_name=HG003_chrY_T0002078;gene_name=USP9YP18;ID=intron:HG003_chrY_T0002078:0;Name=USP9YP18;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1435485	1435600	.	+	.	source_transcript=ENST00000425912.1;source_transcript_name=USP9YP18-201;source_gene=ENSG00000223407.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223407.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425912.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425912.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP18;alternative_source_transcripts=ENST00000425912.1;transcript_id=HG003_chrY_T0002078;gene_id=HG003_chrY_G0000802;Parent=HG003_chrY_T0002078;transcript_name=HG003_chrY_T0002078;gene_name=USP9YP18;ID=exon:HG003_chrY_T0002078:1;Name=USP9YP18;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1435601	1437386	.	+	.	source_transcript=ENST00000425912.1;source_transcript_name=USP9YP18-201;source_gene=ENSG00000223407.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223407.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425912.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425912.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP18;alternative_source_transcripts=ENST00000425912.1;transcript_id=HG003_chrY_T0002078;gene_id=HG003_chrY_G0000802;Parent=HG003_chrY_T0002078;transcript_name=HG003_chrY_T0002078;gene_name=USP9YP18;ID=intron:HG003_chrY_T0002078:1;Name=USP9YP18;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1437387	1437575	.	+	.	source_transcript=ENST00000425912.1;source_transcript_name=USP9YP18-201;source_gene=ENSG00000223407.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223407.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425912.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425912.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP18;alternative_source_transcripts=ENST00000425912.1;transcript_id=HG003_chrY_T0002078;gene_id=HG003_chrY_G0000802;Parent=HG003_chrY_T0002078;transcript_name=HG003_chrY_T0002078;gene_name=USP9YP18;ID=exon:HG003_chrY_T0002078:2;Name=USP9YP18;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1437576	1439933	.	+	.	source_transcript=ENST00000425912.1;source_transcript_name=USP9YP18-201;source_gene=ENSG00000223407.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223407.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425912.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425912.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP18;alternative_source_transcripts=ENST00000425912.1;transcript_id=HG003_chrY_T0002078;gene_id=HG003_chrY_G0000802;Parent=HG003_chrY_T0002078;transcript_name=HG003_chrY_T0002078;gene_name=USP9YP18;ID=intron:HG003_chrY_T0002078:2;Name=USP9YP18;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1439934	1440063	.	+	.	source_transcript=ENST00000425912.1;source_transcript_name=USP9YP18-201;source_gene=ENSG00000223407.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223407.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425912.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425912.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP18;alternative_source_transcripts=ENST00000425912.1;transcript_id=HG003_chrY_T0002078;gene_id=HG003_chrY_G0000802;Parent=HG003_chrY_T0002078;transcript_name=HG003_chrY_T0002078;gene_name=USP9YP18;ID=exon:HG003_chrY_T0002078:3;Name=USP9YP18;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1440064	1441778	.	+	.	source_transcript=ENST00000425912.1;source_transcript_name=USP9YP18-201;source_gene=ENSG00000223407.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223407.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425912.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425912.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP18;alternative_source_transcripts=ENST00000425912.1;transcript_id=HG003_chrY_T0002078;gene_id=HG003_chrY_G0000802;Parent=HG003_chrY_T0002078;transcript_name=HG003_chrY_T0002078;gene_name=USP9YP18;ID=intron:HG003_chrY_T0002078:3;Name=USP9YP18;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1441779	1441817	.	+	.	source_transcript=ENST00000425912.1;source_transcript_name=USP9YP18-201;source_gene=ENSG00000223407.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000223407.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000425912.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000425912.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=USP9YP18;alternative_source_transcripts=ENST00000425912.1;transcript_id=HG003_chrY_T0002078;gene_id=HG003_chrY_G0000802;Parent=HG003_chrY_T0002078;transcript_name=HG003_chrY_T0002078;gene_name=USP9YP18;ID=exon:HG003_chrY_T0002078:4;Name=USP9YP18;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1442225	1443444	.	+	.	source_gene_common_name=HSFY6P;source_gene=ENSG00000224169.1;alternative_source_transcripts=ENST00000445573.1;gene_id=HG003_chrY_G0000803;gene_biotype=unprocessed_pseudogene;gene_name=HSFY6P;gene_sources=liftoff;ID=HG003_chrY_G0000803;Name=HSFY6P
HG003_chrY_random0000146	CAT	transcript	1442225	1443444	1000	+	.	source_transcript=ENST00000445573.1;source_transcript_name=HSFY6P-201;source_gene=ENSG00000224169.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224169.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445573.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445573.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY6P;alternative_source_transcripts=ENST00000445573.1;transcript_id=HG003_chrY_T0002079;gene_id=HG003_chrY_G0000803;Parent=HG003_chrY_G0000803;transcript_name=HG003_chrY_T0002079;gene_name=HSFY6P;ID=HG003_chrY_T0002079;Name=HSFY6P
HG003_chrY_random0000146	CAT	exon	1442225	1442308	.	+	.	source_transcript=ENST00000445573.1;source_transcript_name=HSFY6P-201;source_gene=ENSG00000224169.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224169.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445573.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445573.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY6P;alternative_source_transcripts=ENST00000445573.1;transcript_id=HG003_chrY_T0002079;gene_id=HG003_chrY_G0000803;Parent=HG003_chrY_T0002079;transcript_name=HG003_chrY_T0002079;gene_name=HSFY6P;ID=exon:HG003_chrY_T0002079:0;Name=HSFY6P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1442309	1442640	.	+	.	source_transcript=ENST00000445573.1;source_transcript_name=HSFY6P-201;source_gene=ENSG00000224169.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224169.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445573.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445573.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY6P;alternative_source_transcripts=ENST00000445573.1;transcript_id=HG003_chrY_T0002079;gene_id=HG003_chrY_G0000803;Parent=HG003_chrY_T0002079;transcript_name=HG003_chrY_T0002079;gene_name=HSFY6P;ID=intron:HG003_chrY_T0002079:0;Name=HSFY6P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1442641	1442800	.	+	.	source_transcript=ENST00000445573.1;source_transcript_name=HSFY6P-201;source_gene=ENSG00000224169.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224169.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445573.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445573.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY6P;alternative_source_transcripts=ENST00000445573.1;transcript_id=HG003_chrY_T0002079;gene_id=HG003_chrY_G0000803;Parent=HG003_chrY_T0002079;transcript_name=HG003_chrY_T0002079;gene_name=HSFY6P;ID=exon:HG003_chrY_T0002079:1;Name=HSFY6P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1442801	1443285	.	+	.	source_transcript=ENST00000445573.1;source_transcript_name=HSFY6P-201;source_gene=ENSG00000224169.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224169.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445573.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445573.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY6P;alternative_source_transcripts=ENST00000445573.1;transcript_id=HG003_chrY_T0002079;gene_id=HG003_chrY_G0000803;Parent=HG003_chrY_T0002079;transcript_name=HG003_chrY_T0002079;gene_name=HSFY6P;ID=intron:HG003_chrY_T0002079:1;Name=HSFY6P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1443286	1443444	.	+	.	source_transcript=ENST00000445573.1;source_transcript_name=HSFY6P-201;source_gene=ENSG00000224169.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000224169.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000445573.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000445573.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=HSFY6P;alternative_source_transcripts=ENST00000445573.1;transcript_id=HG003_chrY_T0002079;gene_id=HG003_chrY_G0000803;Parent=HG003_chrY_T0002079;transcript_name=HG003_chrY_T0002079;gene_name=HSFY6P;ID=exon:HG003_chrY_T0002079:2;Name=HSFY6P;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1460494	1463660	.	-	.	source_gene_common_name=ENSG00000295422;source_gene=ENSG00000295422.1;alternative_source_transcripts=ENST00000729927.1;gene_id=HG003_chrY_G0000804;gene_biotype=lncRNA;gene_name=ENSG00000295422;gene_sources=liftoff;ID=HG003_chrY_G0000804;Name=ENSG00000295422
HG003_chrY_random0000146	CAT	transcript	1460494	1463660	1000	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;alternative_source_transcripts=ENST00000729927.1;transcript_id=HG003_chrY_T0002080;gene_id=HG003_chrY_G0000804;Parent=HG003_chrY_G0000804;transcript_name=HG003_chrY_T0002080;gene_name=ENSG00000295422;ID=HG003_chrY_T0002080;Name=ENSG00000295422
HG003_chrY_random0000146	CAT	exon	1460494	1461836	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;alternative_source_transcripts=ENST00000729927.1;transcript_id=HG003_chrY_T0002080;gene_id=HG003_chrY_G0000804;Parent=HG003_chrY_T0002080;transcript_name=HG003_chrY_T0002080;gene_name=ENSG00000295422;ID=exon:HG003_chrY_T0002080:0;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1461837	1463371	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;alternative_source_transcripts=ENST00000729927.1;transcript_id=HG003_chrY_T0002080;gene_id=HG003_chrY_G0000804;Parent=HG003_chrY_T0002080;transcript_name=HG003_chrY_T0002080;gene_name=ENSG00000295422;ID=intron:HG003_chrY_T0002080:0;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1463372	1463432	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;alternative_source_transcripts=ENST00000729927.1;transcript_id=HG003_chrY_T0002080;gene_id=HG003_chrY_G0000804;Parent=HG003_chrY_T0002080;transcript_name=HG003_chrY_T0002080;gene_name=ENSG00000295422;ID=exon:HG003_chrY_T0002080:1;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1463433	1463549	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;alternative_source_transcripts=ENST00000729927.1;transcript_id=HG003_chrY_T0002080;gene_id=HG003_chrY_G0000804;Parent=HG003_chrY_T0002080;transcript_name=HG003_chrY_T0002080;gene_name=ENSG00000295422;ID=intron:HG003_chrY_T0002080:1;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1463550	1463660	.	-	.	source_transcript=ENST00000729927.1;source_transcript_name=ENST00000729927;source_gene=ENSG00000295422.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000295422.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000729927.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000729927.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000295422;alternative_source_transcripts=ENST00000729927.1;transcript_id=HG003_chrY_T0002080;gene_id=HG003_chrY_G0000804;Parent=HG003_chrY_T0002080;transcript_name=HG003_chrY_T0002080;gene_name=ENSG00000295422;ID=exon:HG003_chrY_T0002080:2;Name=ENSG00000295422;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1486418	1514587	.	-	.	source_gene_common_name=ENSG00000305624;source_gene=ENSG00000305624.1;gene_id=HG003_chrY_G0000805;gene_biotype=lncRNA;gene_name=ENSG00000305624;gene_sources=liftoff;ID=HG003_chrY_G0000805;Name=ENSG00000305624
HG003_chrY_random0000146	CAT	transcript	1486418	1514587	1000	-	.	source_transcript=ENST00000812036.1;source_transcript_name=ENST00000812036;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812036.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002081;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_G0000805;transcript_name=HG003_chrY_T0002081;gene_name=ENSG00000305624;ID=HG003_chrY_T0002081;Name=ENSG00000305624
HG003_chrY_random0000146	CAT	exon	1486418	1486678	.	-	.	source_transcript=ENST00000812036.1;source_transcript_name=ENST00000812036;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002081;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002081;transcript_name=HG003_chrY_T0002081;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002081:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1486679	1495036	.	-	.	source_transcript=ENST00000812036.1;source_transcript_name=ENST00000812036;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002081;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002081;transcript_name=HG003_chrY_T0002081;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002081:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1495037	1495137	.	-	.	source_transcript=ENST00000812036.1;source_transcript_name=ENST00000812036;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002081;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002081;transcript_name=HG003_chrY_T0002081;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002081:1;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1495138	1514476	.	-	.	source_transcript=ENST00000812036.1;source_transcript_name=ENST00000812036;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002081;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002081;transcript_name=HG003_chrY_T0002081;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002081:1;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1514477	1514587	.	-	.	source_transcript=ENST00000812036.1;source_transcript_name=ENST00000812036;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812036.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812036.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002081;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002081;transcript_name=HG003_chrY_T0002081;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002081:2;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	1486722	1514587	1000	-	.	source_transcript=ENST00000812035.1;source_transcript_name=ENST00000812035;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812035.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;alternative_source_transcripts=ENST00000812038.1,ENST00000812037.1;transcript_id=HG003_chrY_T0002083;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_G0000805;transcript_name=HG003_chrY_T0002083;gene_name=ENSG00000305624;ID=HG003_chrY_T0002083;Name=ENSG00000305624
HG003_chrY_random0000146	CAT	exon	1486722	1487059	.	-	.	source_transcript=ENST00000812035.1;source_transcript_name=ENST00000812035;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;alternative_source_transcripts=ENST00000812038.1,ENST00000812037.1;transcript_id=HG003_chrY_T0002083;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002083;transcript_name=HG003_chrY_T0002083;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002083:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1487060	1495036	.	-	.	source_transcript=ENST00000812035.1;source_transcript_name=ENST00000812035;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;alternative_source_transcripts=ENST00000812038.1,ENST00000812037.1;transcript_id=HG003_chrY_T0002083;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002083;transcript_name=HG003_chrY_T0002083;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002083:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1495037	1495137	.	-	.	source_transcript=ENST00000812035.1;source_transcript_name=ENST00000812035;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;alternative_source_transcripts=ENST00000812038.1,ENST00000812037.1;transcript_id=HG003_chrY_T0002083;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002083;transcript_name=HG003_chrY_T0002083;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002083:1;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1495138	1514476	.	-	.	source_transcript=ENST00000812035.1;source_transcript_name=ENST00000812035;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;alternative_source_transcripts=ENST00000812038.1,ENST00000812037.1;transcript_id=HG003_chrY_T0002083;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002083;transcript_name=HG003_chrY_T0002083;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002083:1;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1514477	1514587	.	-	.	source_transcript=ENST00000812035.1;source_transcript_name=ENST00000812035;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812035.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812035.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;alternative_source_transcripts=ENST00000812038.1,ENST00000812037.1;transcript_id=HG003_chrY_T0002083;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002083;transcript_name=HG003_chrY_T0002083;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002083:2;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	1490944	1514587	1000	-	.	source_transcript=ENST00000812039.1;source_transcript_name=ENST00000812039;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812039.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;alternative_source_transcripts=ENST00000812040.1;transcript_id=HG003_chrY_T0002084;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_G0000805;transcript_name=HG003_chrY_T0002084;gene_name=ENSG00000305624;ID=HG003_chrY_T0002084;Name=ENSG00000305624
HG003_chrY_random0000146	CAT	exon	1490944	1491161	.	-	.	source_transcript=ENST00000812039.1;source_transcript_name=ENST00000812039;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;alternative_source_transcripts=ENST00000812040.1;transcript_id=HG003_chrY_T0002084;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002084;transcript_name=HG003_chrY_T0002084;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002084:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1491162	1495036	.	-	.	source_transcript=ENST00000812039.1;source_transcript_name=ENST00000812039;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;alternative_source_transcripts=ENST00000812040.1;transcript_id=HG003_chrY_T0002084;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002084;transcript_name=HG003_chrY_T0002084;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002084:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1495037	1495137	.	-	.	source_transcript=ENST00000812039.1;source_transcript_name=ENST00000812039;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;alternative_source_transcripts=ENST00000812040.1;transcript_id=HG003_chrY_T0002084;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002084;transcript_name=HG003_chrY_T0002084;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002084:1;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1495138	1514476	.	-	.	source_transcript=ENST00000812039.1;source_transcript_name=ENST00000812039;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;alternative_source_transcripts=ENST00000812040.1;transcript_id=HG003_chrY_T0002084;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002084;transcript_name=HG003_chrY_T0002084;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002084:1;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1514477	1514587	.	-	.	source_transcript=ENST00000812039.1;source_transcript_name=ENST00000812039;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812039.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812039.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;alternative_source_transcripts=ENST00000812040.1;transcript_id=HG003_chrY_T0002084;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002084;transcript_name=HG003_chrY_T0002084;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002084:2;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	1495079	1514587	1000	-	.	source_transcript=ENST00000812034.1;source_transcript_name=ENST00000812034;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812034.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002085;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_G0000805;transcript_name=HG003_chrY_T0002085;gene_name=ENSG00000305624;ID=HG003_chrY_T0002085;Name=ENSG00000305624
HG003_chrY_random0000146	CAT	exon	1495079	1495137	.	-	.	source_transcript=ENST00000812034.1;source_transcript_name=ENST00000812034;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002085;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002085;transcript_name=HG003_chrY_T0002085;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002085:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1495138	1514476	.	-	.	source_transcript=ENST00000812034.1;source_transcript_name=ENST00000812034;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002085;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002085;transcript_name=HG003_chrY_T0002085;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002085:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1514477	1514587	.	-	.	source_transcript=ENST00000812034.1;source_transcript_name=ENST00000812034;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812034.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812034.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002085;gene_id=HG003_chrY_G0000805;Parent=HG003_chrY_T0002085;transcript_name=HG003_chrY_T0002085;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002085:1;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1486647	1519692	.	-	.	source_gene_common_name=OFD1P10Y;source_gene=ENSG00000225466.1;alternative_source_transcripts=ENST00000434110.1;gene_id=HG003_chrY_G0000806;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=OFD1P10Y;gene_sources=liftoff;ID=HG003_chrY_G0000806;Name=OFD1P10Y
HG003_chrY_random0000146	CAT	transcript	1486647	1519692	1000	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_G0000806;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=HG003_chrY_T0002082;Name=OFD1P10Y
HG003_chrY_random0000146	CAT	exon	1486647	1486678	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=exon:HG003_chrY_T0002082:0;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1486679	1486977	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=intron:HG003_chrY_T0002082:0;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1486978	1487059	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=exon:HG003_chrY_T0002082:1;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1487060	1488247	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=intron:HG003_chrY_T0002082:1;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1488248	1488402	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=exon:HG003_chrY_T0002082:2;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1488403	1495036	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=intron:HG003_chrY_T0002082:2;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1495037	1495137	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=exon:HG003_chrY_T0002082:3;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1495138	1514482	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=intron:HG003_chrY_T0002082:3;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1514483	1514587	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=exon:HG003_chrY_T0002082:4;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1514588	1514960	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=intron:HG003_chrY_T0002082:4;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1514961	1515576	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=exon:HG003_chrY_T0002082:5;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1515577	1517293	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=intron:HG003_chrY_T0002082:5;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1517294	1517403	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=exon:HG003_chrY_T0002082:6;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1517404	1517939	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=intron:HG003_chrY_T0002082:6;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1517940	1518064	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=exon:HG003_chrY_T0002082:7;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1518065	1519585	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=intron:HG003_chrY_T0002082:7;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1519586	1519692	.	-	.	source_transcript=ENST00000434110.1;source_transcript_name=OFD1P10Y-201;source_gene=ENSG00000225466.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000225466.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000434110.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000434110.1;transcript_score=300.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=OFD1P10Y;alternative_source_transcripts=ENST00000434110.1;transcript_id=HG003_chrY_T0002082;gene_id=HG003_chrY_G0000806;Parent=HG003_chrY_T0002082;transcript_name=HG003_chrY_T0002082;gene_name=OFD1P10Y;ID=exon:HG003_chrY_T0002082:8;Name=OFD1P10Y;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1540676	1546132	.	+	.	source_gene_common_name=ENSG00000299625;source_gene=ENSG00000299625.1;gene_id=HG003_chrY_G0000807;gene_biotype=lncRNA;gene_name=ENSG00000299625;gene_sources=liftoff;ID=HG003_chrY_G0000807;Name=ENSG00000299625
HG003_chrY_random0000146	CAT	transcript	1540676	1546126	1000	+	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0002086;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_G0000807;transcript_name=HG003_chrY_T0002086;gene_name=ENSG00000299625;ID=HG003_chrY_T0002086;Name=ENSG00000299625
HG003_chrY_random0000146	CAT	exon	1540676	1541015	.	+	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0002086;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_T0002086;transcript_name=HG003_chrY_T0002086;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0002086:0;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1541016	1544935	.	+	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0002086;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_T0002086;transcript_name=HG003_chrY_T0002086;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0002086:0;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1544936	1545062	.	+	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0002086;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_T0002086;transcript_name=HG003_chrY_T0002086;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0002086:1;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1545063	1545426	.	+	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0002086;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_T0002086;transcript_name=HG003_chrY_T0002086;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0002086:1;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1545427	1546126	.	+	.	source_transcript=ENST00000765190.1;source_transcript_name=ENST00000765190;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765190.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765190.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;transcript_id=HG003_chrY_T0002086;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_T0002086;transcript_name=HG003_chrY_T0002086;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0002086:2;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	1540677	1546132	1000	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;alternative_source_transcripts=ENST00000812264.1;transcript_id=HG003_chrY_T0002087;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_G0000807;transcript_name=HG003_chrY_T0002087;gene_name=ENSG00000299625;ID=HG003_chrY_T0002087;Name=ENSG00000299625
HG003_chrY_random0000146	CAT	exon	1540677	1541015	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;alternative_source_transcripts=ENST00000812264.1;transcript_id=HG003_chrY_T0002087;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_T0002087;transcript_name=HG003_chrY_T0002087;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0002087:0;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1541016	1542933	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;alternative_source_transcripts=ENST00000812264.1;transcript_id=HG003_chrY_T0002087;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_T0002087;transcript_name=HG003_chrY_T0002087;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0002087:0;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1542934	1543067	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;alternative_source_transcripts=ENST00000812264.1;transcript_id=HG003_chrY_T0002087;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_T0002087;transcript_name=HG003_chrY_T0002087;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0002087:1;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1543068	1544935	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;alternative_source_transcripts=ENST00000812264.1;transcript_id=HG003_chrY_T0002087;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_T0002087;transcript_name=HG003_chrY_T0002087;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0002087:1;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1544936	1545062	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;alternative_source_transcripts=ENST00000812264.1;transcript_id=HG003_chrY_T0002087;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_T0002087;transcript_name=HG003_chrY_T0002087;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0002087:2;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1545063	1545426	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;alternative_source_transcripts=ENST00000812264.1;transcript_id=HG003_chrY_T0002087;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_T0002087;transcript_name=HG003_chrY_T0002087;gene_name=ENSG00000299625;ID=intron:HG003_chrY_T0002087:2;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1545427	1546132	.	+	.	source_transcript=ENST00000765189.1;source_transcript_name=ENST00000765189;source_gene=ENSG00000299625.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000299625.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765189.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765189.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000299625;alternative_source_transcripts=ENST00000812264.1;transcript_id=HG003_chrY_T0002087;gene_id=HG003_chrY_G0000807;Parent=HG003_chrY_T0002087;transcript_name=HG003_chrY_T0002087;gene_name=ENSG00000299625;ID=exon:HG003_chrY_T0002087:3;Name=ENSG00000299625;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1549906	1551482	.	-	.	source_gene_common_name=ENSG00000236647;source_gene=ENSG00000236647.1;alternative_source_transcripts=ENST00000444014.1;gene_id=HG003_chrY_G0000808;gene_biotype=unprocessed_pseudogene;gene_name=ENSG00000236647;gene_sources=liftoff;ID=HG003_chrY_G0000808;Name=ENSG00000236647
HG003_chrY_random0000146	CAT	transcript	1549906	1551482	1000	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;alternative_source_transcripts=ENST00000444014.1;transcript_id=HG003_chrY_T0002088;gene_id=HG003_chrY_G0000808;Parent=HG003_chrY_G0000808;transcript_name=HG003_chrY_T0002088;gene_name=ENSG00000236647;ID=HG003_chrY_T0002088;Name=ENSG00000236647
HG003_chrY_random0000146	CAT	exon	1549906	1549981	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;alternative_source_transcripts=ENST00000444014.1;transcript_id=HG003_chrY_T0002088;gene_id=HG003_chrY_G0000808;Parent=HG003_chrY_T0002088;transcript_name=HG003_chrY_T0002088;gene_name=ENSG00000236647;ID=exon:HG003_chrY_T0002088:0;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1549982	1550098	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;alternative_source_transcripts=ENST00000444014.1;transcript_id=HG003_chrY_T0002088;gene_id=HG003_chrY_G0000808;Parent=HG003_chrY_T0002088;transcript_name=HG003_chrY_T0002088;gene_name=ENSG00000236647;ID=intron:HG003_chrY_T0002088:0;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1550099	1550238	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;alternative_source_transcripts=ENST00000444014.1;transcript_id=HG003_chrY_T0002088;gene_id=HG003_chrY_G0000808;Parent=HG003_chrY_T0002088;transcript_name=HG003_chrY_T0002088;gene_name=ENSG00000236647;ID=exon:HG003_chrY_T0002088:1;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1550239	1550333	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;alternative_source_transcripts=ENST00000444014.1;transcript_id=HG003_chrY_T0002088;gene_id=HG003_chrY_G0000808;Parent=HG003_chrY_T0002088;transcript_name=HG003_chrY_T0002088;gene_name=ENSG00000236647;ID=intron:HG003_chrY_T0002088:1;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1550334	1550408	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;alternative_source_transcripts=ENST00000444014.1;transcript_id=HG003_chrY_T0002088;gene_id=HG003_chrY_G0000808;Parent=HG003_chrY_T0002088;transcript_name=HG003_chrY_T0002088;gene_name=ENSG00000236647;ID=exon:HG003_chrY_T0002088:2;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1550409	1550637	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;alternative_source_transcripts=ENST00000444014.1;transcript_id=HG003_chrY_T0002088;gene_id=HG003_chrY_G0000808;Parent=HG003_chrY_T0002088;transcript_name=HG003_chrY_T0002088;gene_name=ENSG00000236647;ID=intron:HG003_chrY_T0002088:2;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1550638	1550676	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;alternative_source_transcripts=ENST00000444014.1;transcript_id=HG003_chrY_T0002088;gene_id=HG003_chrY_G0000808;Parent=HG003_chrY_T0002088;transcript_name=HG003_chrY_T0002088;gene_name=ENSG00000236647;ID=exon:HG003_chrY_T0002088:3;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1550677	1551140	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;alternative_source_transcripts=ENST00000444014.1;transcript_id=HG003_chrY_T0002088;gene_id=HG003_chrY_G0000808;Parent=HG003_chrY_T0002088;transcript_name=HG003_chrY_T0002088;gene_name=ENSG00000236647;ID=intron:HG003_chrY_T0002088:3;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1551141	1551482	.	-	.	source_transcript=ENST00000444014.1;source_transcript_name=ENST00000444014;source_gene=ENSG00000236647.1;source_gene_biotype=unprocessed_pseudogene;original_gene_id=ENSG00000236647.1;gene_biotype=unprocessed_pseudogene;transcript_biotype=unprocessed_pseudogene;alignment_id=ENST00000444014.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444014.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000236647;alternative_source_transcripts=ENST00000444014.1;transcript_id=HG003_chrY_T0002088;gene_id=HG003_chrY_G0000808;Parent=HG003_chrY_T0002088;transcript_name=HG003_chrY_T0002088;gene_name=ENSG00000236647;ID=exon:HG003_chrY_T0002088:4;Name=ENSG00000236647;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1552333	1566464	.	+	.	source_gene_common_name=ENSG00000293280;source_gene=ENSG00000293280.2;gene_id=HG003_chrY_G0000809;gene_biotype=lncRNA;gene_name=ENSG00000293280;gene_sources=liftoff;ID=HG003_chrY_G0000809;Name=ENSG00000293280
HG003_chrY_random0000146	CAT	transcript	1552333	1560826	1000	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_G0000809;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=HG003_chrY_T0002089;Name=ENSG00000293280
HG003_chrY_random0000146	CAT	exon	1552333	1552496	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002089:0;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1552497	1553250	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002089:0;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1553251	1553330	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002089:1;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1553331	1554344	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002089:1;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1554345	1554457	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002089:2;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1554458	1554910	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002089:2;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1554911	1555014	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002089:3;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1555015	1557722	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002089:3;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1557723	1557900	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002089:4;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1557901	1559835	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002089:4;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1559836	1559988	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002089:5;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1559989	1560566	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002089:5;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1560567	1560826	.	+	.	source_transcript=ENST00000765087.1;source_transcript_name=ENST00000765087;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000765087.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000765087.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002089;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002089;transcript_name=HG003_chrY_T0002089;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002089:6;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	1552343	1566464	1000	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_G0000809;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=HG003_chrY_T0002090;Name=ENSG00000293280
HG003_chrY_random0000146	CAT	exon	1552343	1552496	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002090:0;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1552497	1553250	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002090:0;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1553251	1553330	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002090:1;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1553331	1554344	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002090:1;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1554345	1554457	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002090:2;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1554458	1554910	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002090:2;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1554911	1555014	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002090:3;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1555015	1557722	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002090:3;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1557723	1557900	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002090:4;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1557901	1559835	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002090:4;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1559836	1559988	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002090:5;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1559989	1561995	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002090:5;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1561996	1562110	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002090:6;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1562111	1566042	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=intron:HG003_chrY_T0002090:6;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1566043	1566464	.	+	.	source_transcript=ENST00000400476.3;source_transcript_name=ENST00000400476;source_gene=ENSG00000293280.2;source_gene_biotype=lncRNA;original_gene_id=ENSG00000293280.2;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000400476.3;alignment_mode=liftoff;normalized_transcript_id=ENST00000400476.3;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000293280;transcript_id=HG003_chrY_T0002090;gene_id=HG003_chrY_G0000809;Parent=HG003_chrY_T0002090;transcript_name=HG003_chrY_T0002090;gene_name=ENSG00000293280;ID=exon:HG003_chrY_T0002090:7;Name=ENSG00000293280;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1554349	1563983	.	+	.	source_gene_common_name=RBMY2DP;source_gene=ENSG00000215507.11;gene_id=HG003_chrY_G0000810;gene_biotype=transcribed_processed_pseudogene;gene_name=RBMY2DP;gene_sources=liftoff;ID=HG003_chrY_G0000810;Name=RBMY2DP
HG003_chrY_random0000146	CAT	transcript	1554349	1563983	1000	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_G0000810;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=HG003_chrY_T0002091;Name=RBMY2DP
HG003_chrY_random0000146	CAT	exon	1554349	1554457	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=exon:HG003_chrY_T0002091:0;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1554458	1554910	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=intron:HG003_chrY_T0002091:0;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1554911	1555014	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=exon:HG003_chrY_T0002091:1;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1555015	1557722	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=intron:HG003_chrY_T0002091:1;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1557723	1557900	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=exon:HG003_chrY_T0002091:2;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1557901	1559835	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=intron:HG003_chrY_T0002091:2;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1559836	1559988	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=exon:HG003_chrY_T0002091:3;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1559989	1561995	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=intron:HG003_chrY_T0002091:3;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1561996	1562110	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=exon:HG003_chrY_T0002091:4;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1562111	1562979	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=intron:HG003_chrY_T0002091:4;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1562980	1563090	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=exon:HG003_chrY_T0002091:5;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1563091	1563172	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=intron:HG003_chrY_T0002091:5;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1563173	1563260	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=exon:HG003_chrY_T0002091:6;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1563261	1563684	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=intron:HG003_chrY_T0002091:6;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1563685	1563983	.	+	.	source_transcript=ENST00000448881.5;source_transcript_name=RBMY2DP-201;source_gene=ENSG00000215507.11;source_gene_biotype=transcribed_processed_pseudogene;original_gene_id=ENSG00000215507.11;gene_biotype=transcribed_processed_pseudogene;transcript_biotype=transcribed_processed_pseudogene;alignment_id=ENST00000448881.5;alignment_mode=liftoff;normalized_transcript_id=ENST00000448881.5;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=RBMY2DP;transcript_id=HG003_chrY_T0002091;gene_id=HG003_chrY_G0000810;Parent=HG003_chrY_T0002091;transcript_name=HG003_chrY_T0002091;gene_name=RBMY2DP;ID=exon:HG003_chrY_T0002091:7;Name=RBMY2DP;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1568960	1629133	.	-	.	source_gene_common_name=ENSG00000305624;source_gene=ENSG00000305624.1;gene_id=HG003_chrY_G0000811;gene_biotype=lncRNA;gene_name=ENSG00000305624;gene_sources=liftoff;ID=HG003_chrY_G0000811;Name=ENSG00000305624
HG003_chrY_random0000146	CAT	transcript	1568960	1600995	1000	-	.	source_transcript=ENST00000812042.1;source_transcript_name=ENST00000812042;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812042.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002092;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_G0000811;transcript_name=HG003_chrY_T0002092;gene_name=ENSG00000305624;ID=HG003_chrY_T0002092;Name=ENSG00000305624
HG003_chrY_random0000146	CAT	exon	1568960	1569138	.	-	.	source_transcript=ENST00000812042.1;source_transcript_name=ENST00000812042;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002092;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002092;transcript_name=HG003_chrY_T0002092;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002092:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1569139	1575716	.	-	.	source_transcript=ENST00000812042.1;source_transcript_name=ENST00000812042;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002092;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002092;transcript_name=HG003_chrY_T0002092;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002092:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1575717	1575811	.	-	.	source_transcript=ENST00000812042.1;source_transcript_name=ENST00000812042;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002092;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002092;transcript_name=HG003_chrY_T0002092;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002092:1;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1575812	1575921	.	-	.	source_transcript=ENST00000812042.1;source_transcript_name=ENST00000812042;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002092;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002092;transcript_name=HG003_chrY_T0002092;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002092:1;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1575922	1576067	.	-	.	source_transcript=ENST00000812042.1;source_transcript_name=ENST00000812042;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002092;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002092;transcript_name=HG003_chrY_T0002092;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002092:2;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1576068	1576153	.	-	.	source_transcript=ENST00000812042.1;source_transcript_name=ENST00000812042;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002092;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002092;transcript_name=HG003_chrY_T0002092;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002092:2;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1576154	1576269	.	-	.	source_transcript=ENST00000812042.1;source_transcript_name=ENST00000812042;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002092;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002092;transcript_name=HG003_chrY_T0002092;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002092:3;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1576270	1600951	.	-	.	source_transcript=ENST00000812042.1;source_transcript_name=ENST00000812042;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002092;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002092;transcript_name=HG003_chrY_T0002092;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002092:3;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1600952	1600995	.	-	.	source_transcript=ENST00000812042.1;source_transcript_name=ENST00000812042;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812042.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812042.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002092;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002092;transcript_name=HG003_chrY_T0002092;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002092:4;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	1568960	1569138	1000	-	.	source_transcript=ENST00000812041.1;source_transcript_name=ENST00000812041;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812041.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812041.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002093;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_G0000811;transcript_name=HG003_chrY_T0002093;gene_name=ENSG00000305624;ID=HG003_chrY_T0002093;Name=ENSG00000305624
HG003_chrY_random0000146	CAT	exon	1568960	1569138	.	-	.	source_transcript=ENST00000812041.1;source_transcript_name=ENST00000812041;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812041.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812041.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002093;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002093;transcript_name=HG003_chrY_T0002093;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002093:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	1598655	1629133	1000	-	.	source_transcript=ENST00000812043.1;source_transcript_name=ENST00000812043;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812043.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002095;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_G0000811;transcript_name=HG003_chrY_T0002095;gene_name=ENSG00000305624;ID=HG003_chrY_T0002095;Name=ENSG00000305624
HG003_chrY_random0000146	CAT	exon	1598655	1599333	.	-	.	source_transcript=ENST00000812043.1;source_transcript_name=ENST00000812043;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002095;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002095;transcript_name=HG003_chrY_T0002095;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002095:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1599334	1600951	.	-	.	source_transcript=ENST00000812043.1;source_transcript_name=ENST00000812043;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002095;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002095;transcript_name=HG003_chrY_T0002095;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002095:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1600952	1600995	.	-	.	source_transcript=ENST00000812043.1;source_transcript_name=ENST00000812043;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002095;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002095;transcript_name=HG003_chrY_T0002095;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002095:1;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1600996	1628686	.	-	.	source_transcript=ENST00000812043.1;source_transcript_name=ENST00000812043;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002095;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002095;transcript_name=HG003_chrY_T0002095;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002095:1;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1628687	1629133	.	-	.	source_transcript=ENST00000812043.1;source_transcript_name=ENST00000812043;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812043.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812043.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002095;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002095;transcript_name=HG003_chrY_T0002095;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002095:2;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	transcript	1600581	1629133	1000	-	.	source_transcript=ENST00000812044.1;source_transcript_name=ENST00000812044;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812044.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002096;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_G0000811;transcript_name=HG003_chrY_T0002096;gene_name=ENSG00000305624;ID=HG003_chrY_T0002096;Name=ENSG00000305624
HG003_chrY_random0000146	CAT	exon	1600581	1600995	.	-	.	source_transcript=ENST00000812044.1;source_transcript_name=ENST00000812044;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002096;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002096;transcript_name=HG003_chrY_T0002096;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002096:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1600996	1629006	.	-	.	source_transcript=ENST00000812044.1;source_transcript_name=ENST00000812044;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002096;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002096;transcript_name=HG003_chrY_T0002096;gene_name=ENSG00000305624;ID=intron:HG003_chrY_T0002096:0;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1629007	1629133	.	-	.	source_transcript=ENST00000812044.1;source_transcript_name=ENST00000812044;source_gene=ENSG00000305624.1;source_gene_biotype=lncRNA;original_gene_id=ENSG00000305624.1;gene_biotype=lncRNA;transcript_biotype=lncRNA;alignment_id=ENST00000812044.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000812044.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000305624;transcript_id=HG003_chrY_T0002096;gene_id=HG003_chrY_G0000811;Parent=HG003_chrY_T0002096;transcript_name=HG003_chrY_T0002096;gene_name=ENSG00000305624;ID=exon:HG003_chrY_T0002096:1;Name=ENSG00000305624;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	gene	1575922	1577970	.	-	.	source_gene_common_name=ENSG00000230073;source_gene=ENSG00000230073.1;gene_id=HG003_chrY_G0000812;gene_biotype=transcribed_unprocessed_pseudogene;gene_name=ENSG00000230073;gene_sources=liftoff;ID=HG003_chrY_G0000812;Name=ENSG00000230073
HG003_chrY_random0000146	CAT	transcript	1575922	1577970	1000	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;frameshift=N/A;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0002094;gene_id=HG003_chrY_G0000812;Parent=HG003_chrY_G0000812;transcript_name=HG003_chrY_T0002094;gene_name=ENSG00000230073;ID=HG003_chrY_T0002094;Name=ENSG00000230073
HG003_chrY_random0000146	CAT	exon	1575922	1576065	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0002094;gene_id=HG003_chrY_G0000812;Parent=HG003_chrY_T0002094;transcript_name=HG003_chrY_T0002094;gene_name=ENSG00000230073;ID=exon:HG003_chrY_T0002094:0;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1576066	1576157	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0002094;gene_id=HG003_chrY_G0000812;Parent=HG003_chrY_T0002094;transcript_name=HG003_chrY_T0002094;gene_name=ENSG00000230073;ID=intron:HG003_chrY_T0002094:0;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1576158	1576281	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0002094;gene_id=HG003_chrY_G0000812;Parent=HG003_chrY_T0002094;transcript_name=HG003_chrY_T0002094;gene_name=ENSG00000230073;ID=exon:HG003_chrY_T0002094:1;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1576282	1576481	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0002094;gene_id=HG003_chrY_G0000812;Parent=HG003_chrY_T0002094;transcript_name=HG003_chrY_T0002094;gene_name=ENSG00000230073;ID=intron:HG003_chrY_T0002094:1;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1576482	1576538	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0002094;gene_id=HG003_chrY_G0000812;Parent=HG003_chrY_T0002094;transcript_name=HG003_chrY_T0002094;gene_name=ENSG00000230073;ID=exon:HG003_chrY_T0002094:2;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	intron	1576539	1577568	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0002094;gene_id=HG003_chrY_G0000812;Parent=HG003_chrY_T0002094;transcript_name=HG003_chrY_T0002094;gene_name=ENSG00000230073;ID=intron:HG003_chrY_T0002094:2;Name=ENSG00000230073;rna_support=False;reference_support=False
HG003_chrY_random0000146	CAT	exon	1577569	1577970	.	-	.	source_transcript=ENST00000444350.1;source_transcript_name=ENST00000444350;source_gene=ENSG00000230073.1;source_gene_biotype=transcribed_unprocessed_pseudogene;original_gene_id=ENSG00000230073.1;gene_biotype=transcribed_unprocessed_pseudogene;transcript_biotype=transcribed_unprocessed_pseudogene;alignment_id=ENST00000444350.1;alignment_mode=liftoff;normalized_transcript_id=ENST00000444350.1;transcript_score=0.0;transcript_class=ortholog;valid_start=True;valid_stop=True;proper_orf=True;exon_annotation_support=;intron_annotation_support=;exon_rna_support=;intron_rna_support=;source_gene_common_name=ENSG00000230073;transcript_id=HG003_chrY_T0002094;gene_id=HG003_chrY_G0000812;Parent=HG003_chrY_T0002094;transcript_name=HG003_chrY_T0002094;gene_name=ENSG00000230073;ID=exon:HG003_chrY_T0002094:3;Name=ENSG00000230073;rna_support=False;reference_support=False